BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2681 Length=438 Score E Sequences producing significant alignments: (Bits) Value gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycoba... 856 0.0 gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [... 856 0.0 gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycoba... 855 0.0 gi|340627682|ref|YP_004746134.1| hypothetical protein MCAN_27071... 854 0.0 gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium... 811 0.0 gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [... 809 0.0 gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [... 786 0.0 gi|240169721|ref|ZP_04748380.1| hypothetical protein MkanA1_1043... 650 0.0 gi|118618645|ref|YP_906977.1| hypothetical protein MUL_3315 [Myc... 609 2e-172 gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycoba... 606 3e-171 gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium pa... 591 8e-167 gi|342858448|ref|ZP_08715103.1| 3'-5' exonuclease [Mycobacterium... 578 6e-163 gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium in... 569 4e-160 gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium aviu... 561 7e-158 gi|336458819|gb|EGO37776.1| ribonuclease D [Mycobacterium avium ... 560 2e-157 gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium av... 558 6e-157 gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacteriu... 557 1e-156 gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium s... 557 1e-156 gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycob... 557 2e-156 gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium... 544 1e-152 gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium v... 539 5e-151 gi|289758809|ref|ZP_06518187.1| LOW QUALITY PROTEIN: predicted p... 536 3e-150 gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smeg... 534 1e-149 gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium s... 522 5e-146 gi|333991066|ref|YP_004523680.1| hypothetical protein JDM601_242... 508 5e-142 gi|289762852|ref|ZP_06522230.1| conserved alanine rich protein [... 501 1e-139 gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [... 481 1e-133 gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus eq... 440 3e-121 gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]... 439 4e-121 gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jost... 423 4e-116 gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus eryt... 421 2e-115 gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus ery... 420 3e-115 gi|54025710|ref|YP_119952.1| putative RNase D [Nocardia farcinic... 419 6e-115 gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacu... 418 1e-114 gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neof... 386 3e-105 gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Strepto... 383 3e-104 gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospo... 381 1e-103 gi|343924647|ref|ZP_08764191.1| ribonuclease D [Gordonia alkaniv... 381 1e-103 gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospor... 377 3e-102 gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingche... 374 1e-101 gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomy... 374 2e-101 gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatoph... 372 5e-101 gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp.... 372 6e-101 gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnem... 371 2e-100 gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis m... 370 3e-100 gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp.... 370 3e-100 gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp.... 369 5e-100 gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces gha... 365 6e-99 gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospo... 365 8e-99 gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces gri... 364 1e-98 >gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycobacterium tuberculosis H37Rv] gi|15842219|ref|NP_337256.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551] gi|148662522|ref|YP_001284045.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra] 41 more sequence titles Length=438 Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/438 (100%), Positives = 438/438 (100%), Gaps = 0/438 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER Sbjct 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP Sbjct 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL Sbjct 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI Sbjct 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG Sbjct 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE Sbjct 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL Sbjct 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 Query 421 TAALTGAPDAGAQGDDGS 438 TAALTGAPDAGAQGDDGS Sbjct 421 TAALTGAPDAGAQGDDGS 438 >gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001] gi|308371097|ref|ZP_07667091.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003] gi|308374662|ref|ZP_07667838.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006] 11 more sequence titles Length=468 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/438 (100%), Positives = 438/438 (100%), Gaps = 0/438 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER Sbjct 31 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 90 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP Sbjct 91 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 150 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL Sbjct 151 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 210 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI Sbjct 211 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 270 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG Sbjct 271 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 330 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE Sbjct 331 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 390 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL Sbjct 391 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 450 Query 421 TAALTGAPDAGAQGDDGS 438 TAALTGAPDAGAQGDDGS Sbjct 451 TAALTGAPDAGAQGDDGS 468 >gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycobacterium bovis AF2122/97] gi|121638556|ref|YP_978780.1| hypothetical protein BCG_2694 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991048|ref|YP_002645737.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31619447|emb|CAD94885.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494204|emb|CAL72682.1| Conserved hypothetical alanine rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774163|dbj|BAH26969.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341602594|emb|CCC65270.1| conserved hypothetical alanine rich protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=438 Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/438 (99%), Positives = 437/438 (99%), Gaps = 0/438 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER Sbjct 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP Sbjct 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL Sbjct 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRA ISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI Sbjct 181 NYAALDVELLIELRAVISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG Sbjct 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE Sbjct 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL Sbjct 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 Query 421 TAALTGAPDAGAQGDDGS 438 TAALTGAPDAGAQGDDGS Sbjct 421 TAALTGAPDAGAQGDDGS 438 >gi|340627682|ref|YP_004746134.1| hypothetical protein MCAN_27071 [Mycobacterium canettii CIPT 140010059] gi|340005872|emb|CCC45038.1| conserved hypothetical alanine rich protein [Mycobacterium canettii CIPT 140010059] Length=438 Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/438 (99%), Positives = 437/438 (99%), Gaps = 0/438 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER Sbjct 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVL TNEWILHSADQDLP Sbjct 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLGTNEWILHSADQDLP 120 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL Sbjct 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI Sbjct 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG Sbjct 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE Sbjct 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL Sbjct 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 Query 421 TAALTGAPDAGAQGDDGS 438 TAALTGAPDAGAQGDDGS Sbjct 421 TAALTGAPDAGAQGDDGS 438 >gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN 4207] Length=416 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/416 (99%), Positives = 416/416 (100%), Gaps = 0/416 (0%) Query 23 LLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGT 82 +LRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGT Sbjct 1 MLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGT 60 Query 83 VLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRLA 142 VLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRLA Sbjct 61 VLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRLA 120 Query 143 GFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLA 202 GFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLA Sbjct 121 GFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLA 180 Query 203 EQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRI 262 EQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRI Sbjct 181 EQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRI 240 Query 263 AQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESP 322 AQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESP Sbjct 241 AQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESP 300 Query 323 DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLC 382 DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLC Sbjct 301 DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLC 360 Query 383 WEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS 438 WEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS Sbjct 361 WEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS 416 >gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [Mycobacterium tuberculosis T17] gi|289544611|gb|EFD48259.1| conserved alanine rich protein [Mycobacterium tuberculosis T17] Length=443 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/413 (100%), Positives = 413/413 (100%), Gaps = 0/413 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER Sbjct 31 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 90 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP Sbjct 91 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 150 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL Sbjct 151 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 210 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI Sbjct 211 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 270 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG Sbjct 271 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 330 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE Sbjct 331 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 390 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQL 413 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQL Sbjct 391 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQL 443 >gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [Mycobacterium tuberculosis H37Ra] gi|254551737|ref|ZP_05142184.1| hypothetical protein Mtube_14982 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294994226|ref|ZP_06799917.1| 3'-5' exonuclease [Mycobacterium tuberculosis 210] gi|297732285|ref|ZP_06961403.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN R506] gi|313659618|ref|ZP_07816498.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN V2475] gi|339295543|gb|AEJ47654.1| hypothetical protein CCDC5079_2464 [Mycobacterium tuberculosis CCDC5079] gi|339299161|gb|AEJ51271.1| hypothetical protein CCDC5180_2434 [Mycobacterium tuberculosis CCDC5180] Length=404 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/404 (99%), Positives = 404/404 (100%), Gaps = 0/404 (0%) Query 35 VTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 94 +TVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP Sbjct 1 MTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDP 60 Query 95 LTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVE 154 LTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVE Sbjct 61 LTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVE 120 Query 155 RLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEF 214 RLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEF Sbjct 121 RLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEF 180 Query 215 EHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRIL 274 EHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRIL Sbjct 181 EHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRIL 240 Query 275 PDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESPDPPEIAEPANGP 334 PDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESPDPPEIAEPANGP Sbjct 241 PDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESPDPPEIAEPANGP 300 Query 335 PPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPD 394 PPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPD Sbjct 301 PPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPD 360 Query 395 PIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS 438 PIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS Sbjct 361 PIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS 404 >gi|240169721|ref|ZP_04748380.1| hypothetical protein MkanA1_10437 [Mycobacterium kansasii ATCC 12478] Length=433 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/435 (79%), Positives = 367/435 (85%), Gaps = 4/435 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCP+PS A S T S PTPLLRPA G+PDL VTVG+I AAAELLDRGRGPFAVDAER Sbjct 1 MCPDPSPAETEPSGTTASGPTPLLRPASGMPDLSVTVGQIEAAAELLDRGRGPFAVDAER 60 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYS RAYLIQIRRA AGTVLIDPVSHGG+P T L PVAEVL +EWILHSADQDLP Sbjct 61 ASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGEPATALQPVAEVLRQDEWILHSADQDLP 120 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRP ALYDTELAGRLAGFDRVNLA MVERLLGLGL KGHGAADWSKRPLP AWL Sbjct 121 CLAEVGMRPSALYDTELAGRLAGFDRVNLATMVERLLGLGLAKGHGAADWSKRPLPPAWL 180 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRAAIS+VL EQGKT WAA+EFEHLR++ESR +AR DRWRRTSGI Sbjct 181 NYAALDVELLIELRAAISQVLTEQGKTGWAAEEFEHLRTYESRSSAVSARPDRWRRTSGI 240 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKV DRRGLAAVRELW ARDRIAQ RDIAPRRILPDSAIIDAAIADP+SV+DL+ALPVFG Sbjct 241 HKVRDRRGLAAVRELWLARDRIAQLRDIAPRRILPDSAIIDAAIADPRSVEDLIALPVFG 300 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GR QRR+AA W AAL AARE+ +PPE+ E ANGPP P RW RRKP AAARL+A RAAL E Sbjct 301 GRKQRRNAATWLAALEAARENQNPPEVTESANGPPLPARWSRRKPEAAARLEAVRAALAE 360 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPIL 420 +SQRV VPTENLVSP+LVRRLCWEW Q + D A++ +LR G ARAWQ LVVP + Sbjct 361 LSQRVGVPTENLVSPELVRRLCWEWAGPRQGAAD---AIDEFLRAGHARAWQRRLVVPAM 417 Query 421 TAALTGAPDAGAQGD 435 AA+T A +A GD Sbjct 418 AAAITRA-NAQPDGD 431 >gi|118618645|ref|YP_906977.1| hypothetical protein MUL_3315 [Mycobacterium ulcerans Agy99] gi|183982048|ref|YP_001850339.1| hypothetical protein MMAR_2035 [Mycobacterium marinum M] gi|118570755|gb|ABL05506.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183175374|gb|ACC40484.1| conserved hypothetical protein [Mycobacterium marinum M] Length=435 Score = 609 bits (1571), Expect = 2e-172, Method: Compositional matrix adjust. Identities = 321/418 (77%), Positives = 357/418 (86%), Gaps = 2/418 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MC S G EGT E TPLL PA G+P+L VT G+I AAA LLDRG GPFAVDAER Sbjct 1 MCSALSPEGNEPPEGTAPEATPLLSPASGVPELSVTAGQIEAAATLLDRGSGPFAVDAER 60 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYS RAYLIQIRRA AGTVLIDPVSHGGDPLTVL P+AEVL+ +EWILHSADQDLP Sbjct 61 ASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGGDPLTVLQPLAEVLAKDEWILHSADQDLP 120 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRP ALYDTELAGRLAG+DRVNLA MVERLLG+GL KGHGAADWSKRPLPS WL Sbjct 121 CLAEVGMRPSALYDTELAGRLAGYDRVNLATMVERLLGMGLVKGHGAADWSKRPLPSDWL 180 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELR+AIS VLAEQGK+DWAAQEFE+LR+FESR PA A+ DRWRRTSGI Sbjct 181 NYAALDVELLIELRSAISGVLAEQGKSDWAAQEFEYLRTFESRWVPATAKPDRWRRTSGI 240 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFG 300 HKV DRRGLAAVRELW RDRIA+RRDIAPRRILPDSAIIDAA++DPKSV+DLV+LPVFG Sbjct 241 HKVRDRRGLAAVRELWITRDRIAERRDIAPRRILPDSAIIDAALSDPKSVEDLVSLPVFG 300 Query 301 GRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTE 360 GRNQRR+A +W AL AR+S PPE+AEP+NGPP P RW RRKP AAARL+AARAAL+E Sbjct 301 GRNQRRNATMWLGALDVARKSQHPPEVAEPSNGPPVPARWSRRKPEAAARLEAARAALSE 360 Query 361 VSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVP 418 VS V VPTENLV+P+LVRRLCW+W ++ + + + ++ +L TGQAR WQ ELVVP Sbjct 361 VSDSVGVPTENLVTPELVRRLCWDWAPVAAA--EITSTIDEFLATGQARVWQRELVVP 416 >gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN] gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923] gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae] gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=429 Score = 606 bits (1562), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 322/420 (77%), Positives = 354/420 (85%), Gaps = 10/420 (2%) Query 15 GTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQ 74 GTE +PTPL PAGGIP+L VT EIAAAAE LD+G GPFAVD ERASGFRYS RAYLIQ Sbjct 11 GTEPDPTPLHYPAGGIPNLSVTPSEIAAAAERLDQGYGPFAVDTERASGFRYSNRAYLIQ 70 Query 75 IRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYD 134 IRRA AGTVLIDPVSHG DPLT L PVAEV+S +EWILHSADQDLPCLAEVGMRPPALYD Sbjct 71 IRRANAGTVLIDPVSHGNDPLTALRPVAEVISKDEWILHSADQDLPCLAEVGMRPPALYD 130 Query 135 TELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELR 194 TELAGRLAGFDRVNLA MV+RLLG L KGHGAADWSKRPLPS WLNYAALDVELLIELR Sbjct 131 TELAGRLAGFDRVNLATMVQRLLGFELAKGHGAADWSKRPLPSDWLNYAALDVELLIELR 190 Query 195 AAISRVLAEQGKTDWAAQEFEHLRSFESR-------PPPAAARQDRWRRTSGIHKVHDRR 247 AIS+VLAEQ KTDWA QEF +LR++ +R PP R+DRWRRTSGI +V DRR Sbjct 191 TAISKVLAEQDKTDWATQEFNYLRTYATRGATTETIPP---TRRDRWRRTSGIRRVRDRR 247 Query 248 GLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRS 307 LAAVRELW RD IAQRRDIAPRRILPD+AIIDAAIADPK++D+L+A+PVFGG NQRRS Sbjct 248 ALAAVRELWATRDHIAQRRDIAPRRILPDTAIIDAAIADPKTIDELIAMPVFGGANQRRS 307 Query 308 AAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRV 367 AA+W AAL AR+S D P+ AEP+N PPPPGRW RRKP AAARL+AARAAL VSQRV V Sbjct 308 AAMWLAALETARQSQDLPDEAEPSNVPPPPGRWARRKPDAAARLEAARAALATVSQRVGV 367 Query 368 PTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGA 427 PTENLVSP+LVRRLCW+WE + +SS DP+ AVE YLR GQARAWQ ELVV IL +A+ + Sbjct 368 PTENLVSPELVRRLCWDWEVLPESSVDPVNAVEEYLRVGQARAWQRELVVTILASAVKSS 427 >gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614] Length=430 Score = 591 bits (1524), Expect = 8e-167, Method: Compositional matrix adjust. Identities = 330/432 (77%), Positives = 358/432 (83%), Gaps = 5/432 (1%) Query 3 PEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERAS 62 PE G + E +PTPLLRPA GIPDL VTVGEI AAAELL RGRGPFAVDAERAS Sbjct 4 PEAHGPGGTAPDSAEPQPTPLLRPAEGIPDLSVTVGEIEAAAELLGRGRGPFAVDAERAS 63 Query 63 GFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCL 122 GFRYS RAYLIQIRRA AGTVLIDPVSHG DPL L PVAEVL +EWILHSADQDLPCL Sbjct 64 GFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPLEALRPVAEVLDEDEWILHSADQDLPCL 123 Query 123 AEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNY 182 AEVG++PPALYDTELAGRLAGF+RVNLA MVERLLG GL KGHGAADWSKRPLP WLNY Sbjct 124 AEVGLQPPALYDTELAGRLAGFERVNLATMVERLLGSGLAKGHGAADWSKRPLPEEWLNY 183 Query 183 AALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHK 242 AALDVELLIELR AI+ VLA+QGKT WAA+EF++LR SR P AAAR DRWRRTSGIH+ Sbjct 184 AALDVELLIELRGAIADVLAQQGKTGWAAEEFDYLRQVGSRDPSAAARPDRWRRTSGIHR 243 Query 243 VHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGR 302 V D+RGLAAVRELW RDRIAQRRDIAPRRILPDSAII+AA+ DPK+++DL ALPVFGGR Sbjct 244 VRDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAIIEAALTDPKTIEDLTALPVFGGR 303 Query 303 NQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVS 362 NQRRSAA W AL AAR++ +PP AEP NGPPPP RW RRKP AAARL+AARAAL+EVS Sbjct 304 NQRRSAATWLGALEAARQTKNPPADAEPPNGPPPPARWSRRKPEAAARLEAARAALSEVS 363 Query 363 QRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTA 422 +RV VPTENLVSPDLVRRLCW+WE +PDP AVE +LR GQAR WQ ELV P+L Sbjct 364 ERVNVPTENLVSPDLVRRLCWDWE----GAPDPFEAVETFLRAGQARPWQRELVDPVLAR 419 Query 423 ALTGAPDAGAQG 434 AL PD A G Sbjct 420 ALQ-PPDDDAGG 430 >gi|342858448|ref|ZP_08715103.1| 3'-5' exonuclease [Mycobacterium colombiense CECT 3035] gi|342134152|gb|EGT87332.1| 3'-5' exonuclease [Mycobacterium colombiense CECT 3035] Length=431 Score = 578 bits (1490), Expect = 6e-163, Method: Compositional matrix adjust. Identities = 316/415 (77%), Positives = 353/415 (86%), Gaps = 4/415 (0%) Query 15 GTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQ 74 GT+ PTPL RP+ G+P + V+V EI AAA+ LDRG GPFAVDAERASGFRYS RAYLIQ Sbjct 18 GTDPAPTPLPRPSEGVPAISVSVHEIEAAAQRLDRGHGPFAVDAERASGFRYSNRAYLIQ 77 Query 75 IRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYD 134 IRRA +GTVLIDPVSHGG+PL L PVAEVL ++EWILHSADQDLPCLAEVGMRPPALYD Sbjct 78 IRRAGSGTVLIDPVSHGGEPLEALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYD 137 Query 135 TELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELR 194 TELAGRLAGFDRVNLA MVERLLG GL KGHGAADWSKRPLP+ WLNYAALDVELLIELR Sbjct 138 TELAGRLAGFDRVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELR 197 Query 195 AAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRE 254 AAI+ VLAEQGKTDWAAQEF++L S+ P AA R+DRWRRTSGIH+V D+RGLAAVRE Sbjct 198 AAIADVLAEQGKTDWAAQEFDYLCDTGSKDPGAAVRRDRWRRTSGIHRVRDQRGLAAVRE 257 Query 255 LWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAA 314 LW RDRIAQRRDIAPRRILPDSAIIDAA+A+P ++++LVALPVFGGRNQRRSAA W A Sbjct 258 LWLTRDRIAQRRDIAPRRILPDSAIIDAALANPTTIEELVALPVFGGRNQRRSAATWLGA 317 Query 315 LAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVS 374 L AR + +PP +EP NGPPPP RW RRKP AAARL+AAR+AL+EVS+RV VPTENLVS Sbjct 318 LDEARRNKNPPGDSEPPNGPPPPARWSRRKPEAAARLEAARSALSEVSERVHVPTENLVS 377 Query 375 PDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPD 429 PDLVRRLCW+W +PDP+ AVEA+LR GQAR WQ ELV P+L AL P+ Sbjct 378 PDLVRRLCWDW----TPAPDPLDAVEAFLRAGQARPWQRELVDPVLARALQAPPE 428 >gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium intracellulare ATCC 13950] Length=430 Score = 569 bits (1466), Expect = 4e-160, Method: Compositional matrix adjust. Identities = 327/422 (78%), Positives = 360/422 (86%), Gaps = 4/422 (0%) Query 3 PEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERAS 62 P P G++ TE PTPL RPA G+P + V+V EI AAAE LDRGRGPFAVDAERAS Sbjct 4 PSPDGPGSSAPGSTEPAPTPLPRPAEGVPPISVSVYEIEAAAERLDRGRGPFAVDAERAS 63 Query 63 GFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCL 122 GFRYS RAYLIQIRRA +GTVLIDPVSHG DPL L PVAEVL T+EWILHSADQDLPCL Sbjct 64 GFRYSNRAYLIQIRRAGSGTVLIDPVSHGRDPLEALRPVAEVLGTDEWILHSADQDLPCL 123 Query 123 AEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNY 182 AEVGMRPPALYDTELAGRLAGF+RVNLA MVERLLG GL KGHGAADWSKRPLP+ WLNY Sbjct 124 AEVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNY 183 Query 183 AALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHK 242 AALDVELLIELRAAI+ VLA QGKTDWAAQEF++LR S+ P AAAR+DRWRRTSGIH+ Sbjct 184 AALDVELLIELRAAIAEVLAGQGKTDWAAQEFDYLRDTGSKDPGAAARRDRWRRTSGIHR 243 Query 243 VHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGR 302 V D+RGLAAVRELW RD+IAQRRDIAPRRILPDSAIIDAA+A+P +V++LVALPVFGGR Sbjct 244 VRDKRGLAAVRELWLTRDQIAQRRDIAPRRILPDSAIIDAALANPTTVEELVALPVFGGR 303 Query 303 NQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVS 362 NQRRSAA W AAL AAR++ +PP AEP NGPPPP RW RRKP AAARL+AARAAL+EVS Sbjct 304 NQRRSAATWLAALEAARQNKNPPVDAEPPNGPPPPARWSRRKPEAAARLEAARAALSEVS 363 Query 363 QRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTA 422 +RV VPTENLVSPDLVRRLCW+WE ++PDP AVEA+LR GQAR WQ ELV P+L Sbjct 364 ERVHVPTENLVSPDLVRRLCWDWE----AAPDPFEAVEAFLRAGQARPWQRELVDPVLAR 419 Query 423 AL 424 AL Sbjct 420 AL 421 >gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104] gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104] Length=428 Score = 561 bits (1446), Expect = 7e-158, Method: Compositional matrix adjust. Identities = 317/418 (76%), Positives = 351/418 (84%), Gaps = 5/418 (1%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PL P+ G+P + +V +I AA LDRGRGPFAVDAERASGFRYS RAYLIQIRRA Sbjct 16 PIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAG 75 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGTVLIDPVSHG DP+ L PVAEVL ++EWILHSADQDLPCLAEVGMRPPALYDTELAG Sbjct 76 AGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYDTELAG 135 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF+RVNLA MVERLLG GL KGHGAADWSKRPLP+ WLNYAALDVELLIELRAAI+ Sbjct 136 RLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAD 195 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 VLAEQGKTDWAAQEF++LR S+ P AAR+DRWRRTSGIH+V D+RGLAAVRELW R Sbjct 196 VLAEQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVRDQRGLAAVRELWLTR 255 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIAQRRDIAPRRILPDSAII+AA+A+P ++++LVALPVFGGRNQRRSAA W AAL AAR Sbjct 256 DRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQRRSAATWLAALDAAR 315 Query 320 ESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVR 379 +S +PP +EP NGPPPP RW RRKP AAARL+AARAAL EVS+RV VPTENLV+PDLVR Sbjct 316 QSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSERVHVPTENLVAPDLVR 375 Query 380 RLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDG 437 RLCW+WE +PDP AAVEA+L G AR WQ ELV P+L AL P A A DDG Sbjct 376 RLCWDWE----PTPDPFAAVEAFLCAGHARPWQRELVDPVLARALQQPPPAVAD-DDG 428 >gi|336458819|gb|EGO37776.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397] Length=428 Score = 560 bits (1442), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 316/418 (76%), Positives = 351/418 (84%), Gaps = 5/418 (1%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PL P+ G+P + +V +I AA LDRGRGPFAVDAERASGFRYS RAYLIQIRRA Sbjct 16 PIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAG 75 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGTVLIDPVSHG DP+ L PVAEVL ++EWILHSADQDLPCLAEVGMRPPALYDTELAG Sbjct 76 AGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYDTELAG 135 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF+RVNLA MVERLLG GL KGHGAADWSKRPLP+ WLNYAALDVELLIELRAAI+ Sbjct 136 RLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAD 195 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 VLAEQGKTDWAAQEF++LR S+ P AAR+DRWRRTSGIH+V D+RGLAAVRELW R Sbjct 196 VLAEQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVRDQRGLAAVRELWLTR 255 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIAQRRDIAPRRILPDSAII+AA+A+P ++++LVALPVFGGRNQRRSAA W AAL AAR Sbjct 256 DRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQRRSAATWLAALDAAR 315 Query 320 ESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVR 379 +S +PP +EP NGPPPP RW RRKP AAARL+AARAAL EVS+RV VPTENLV+PDLVR Sbjct 316 QSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSERVHVPTENLVAPDLVR 375 Query 380 RLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDG 437 RLCW+WE +PDP AAV+A+L G AR WQ ELV P+L AL P A A DDG Sbjct 376 RLCWDWE----PTPDPFAAVDAFLCAGHARPWQRELVDPVLARALQQPPPAVAD-DDG 428 >gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291] Length=416 Score = 558 bits (1438), Expect = 6e-157, Method: Compositional matrix adjust. Identities = 316/418 (76%), Positives = 350/418 (84%), Gaps = 5/418 (1%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PL P+ G+P + +V +I AA LDRGRGPFAVDAERASGFRYS RAYLIQIRRA Sbjct 4 PIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAG 63 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGTVLIDPVSHG DP+ L PVAEVL ++EWILHSADQDLPCLAEVGMRPPALYDTELAG Sbjct 64 AGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYDTELAG 123 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF+RVNLA MVERLLG GL KGHGAADWSKRPLP+ WLNYAALDVELLIELRAAI+ Sbjct 124 RLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAD 183 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 VLA QGKTDWAAQEF++LR S+ P AAR+DRWRRTSGIH+V D+RGLAAVRELW R Sbjct 184 VLAGQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVRDQRGLAAVRELWLTR 243 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIAQRRDIAPRRILPDSAII+AA+A+P ++++LVALPVFGGRNQRRSAA W AAL AAR Sbjct 244 DRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQRRSAATWLAALDAAR 303 Query 320 ESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVR 379 +S +PP +EP NGPPPP RW RRKP AAARL+AARAAL EVS+RV VPTENLV+PDLVR Sbjct 304 QSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSERVHVPTENLVAPDLVR 363 Query 380 RLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDG 437 RLCW+WE +PDP AAVEA+L G AR WQ ELV P+L AL P A A DDG Sbjct 364 RLCWDWE----PTPDPFAAVEAFLCAGHARPWQRELVDPVLARALQQPPPAVAD-DDG 416 >gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK] gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK] Length=424 Score = 557 bits (1436), Expect = 1e-156, Method: Compositional matrix adjust. Identities = 295/429 (69%), Positives = 335/429 (79%), Gaps = 9/429 (2%) Query 2 CPEPSHAGAAES--EGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAE 59 PEP AG+A E T+ E PLL P G+PD+ + EIA AA+LL G GPFAVDAE Sbjct 1 MPEPETAGSAPETPEPTDIEAEPLLTPRDGVPDVSSSRMEIARAADLLASGTGPFAVDAE 60 Query 60 RASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDL 119 RASGFRYS RAYL+QIRR AGTVLIDPVSHGGDP+ VLAPVA VLST+EW+LH+ADQDL Sbjct 61 RASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAVLSTDEWVLHAADQDL 120 Query 120 PCLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAW 179 PCLAE+GMRP ALYDTELAGRLA FDRVNLAAMV+RLLGL LTKGHGAADWSKRPLP W Sbjct 121 PCLAEIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGHGAADWSKRPLPDEW 180 Query 180 LNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSG 239 LNYAALDVE+L +LR AI+ VL EQGK +WA QEFE+LR+FE P R+DRWRRTSG Sbjct 181 LNYAALDVEVLTDLREAIAAVLDEQGKAEWARQEFEYLRTFEGSP----TRRDRWRRTSG 236 Query 240 IHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVF 299 IHKV D R LAAVRELWT RD+IA+RRDIAP RILPDSAII AA A+P +++ L ALPVF Sbjct 237 IHKVRDPRALAAVRELWTTRDQIARRRDIAPGRILPDSAIISAATANPDTIEKLTALPVF 296 Query 300 GGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALT 359 GG QRRSA VW ALA AR + DPP+ EP+NGPPP RW RRKP AA RL+AARA LT Sbjct 297 GGSKQRRSAQVWLDALARARTN-DPPDAQEPSNGPPPASRWSRRKPEAAVRLEAARAELT 355 Query 360 EVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI 419 ++Q+V VP ENL+SP+ VRRLCW+W+ + D AAVEA+LR AR WQ EL VP Sbjct 356 ALAQQVSVPVENLLSPETVRRLCWDWQPPADG--DATAAVEAFLRDSTARQWQRELTVPA 413 Query 420 LTAALTGAP 428 L AL+ P Sbjct 414 LGRALSEPP 422 >gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium sp. Spyr1] gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium sp. Spyr1] Length=424 Score = 557 bits (1436), Expect = 1e-156, Method: Compositional matrix adjust. Identities = 293/429 (69%), Positives = 336/429 (79%), Gaps = 9/429 (2%) Query 2 CPEPSHAGAAES--EGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAE 59 PEP AG+A E T+ E PLL P G+PD+ + EIA AA+LL G GPFAVDAE Sbjct 1 MPEPETAGSAPETPEPTDIEAEPLLTPRDGVPDVSSSRMEIARAADLLASGTGPFAVDAE 60 Query 60 RASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDL 119 RASGFRYS RAYL+QIRR AGTVLIDPVSHGGDP+ VLAPVA VLST+EW+LH+ADQDL Sbjct 61 RASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAVLSTDEWVLHAADQDL 120 Query 120 PCLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAW 179 PCLAE+GMRP ALYDTELAGRLA FDRVNLAAMV+RLLGL LTKGHGAADWSKRPLP W Sbjct 121 PCLAEIGMRPTALYDTELAGRLANFDRVNLAAMVQRLLGLQLTKGHGAADWSKRPLPDEW 180 Query 180 LNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSG 239 LNYAALDVE+L +LR AI+ +L EQGK +WA QEFE+LR+FE P R+DRWRRTSG Sbjct 181 LNYAALDVEVLTDLREAIAAILDEQGKAEWARQEFEYLRTFEGSP----TRRDRWRRTSG 236 Query 240 IHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVF 299 IHKV D R LAAVRELWT RD+IA+RRDIAP RILPDSAII AA A+P +++ L ALPVF Sbjct 237 IHKVRDPRALAAVRELWTTRDQIARRRDIAPGRILPDSAIISAATANPDTIEKLTALPVF 296 Query 300 GGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALT 359 GG QRRSA VW ALA AR + DPP+ EP+NGPPP RW RRKP AA RL+AARA LT Sbjct 297 GGSKQRRSAQVWLDALARARTN-DPPDAQEPSNGPPPASRWSRRKPEAAVRLEAARAELT 355 Query 360 EVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI 419 ++Q+V VP ENL+SP+ VRRLCW+W+ + D AAV+A+LR AR WQ EL VP Sbjct 356 ALAQQVSVPVENLLSPETVRRLCWDWQPPADG--DATAAVDAFLRESTARQWQRELTVPA 413 Query 420 LTAALTGAP 428 L+ AL+ P Sbjct 414 LSRALSEPP 422 >gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp. paratuberculosis K-10] Length=428 Score = 557 bits (1435), Expect = 2e-156, Method: Compositional matrix adjust. Identities = 314/418 (76%), Positives = 349/418 (84%), Gaps = 5/418 (1%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PL P+ G+P + +V +I AA LDRGRGPFAVDAERASGFRYS RAYLIQIRRA Sbjct 16 PIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAG 75 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGTVLIDPVSHG DP+ L PVAEVL ++EWILHSADQDLPCLAEVGMRPPALYDTELAG Sbjct 76 AGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYDTELAG 135 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF+RVNLA MVERLLG GL KGHGAADWSKRPLP+ WLNYAALDVELLIELRAAI+ Sbjct 136 RLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIAD 195 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 VLAEQGKTDWAAQEF++LR S+ P AAR+DRWRRTSGIH+V D+RGLAAVRELW R Sbjct 196 VLAEQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVRDQRGLAAVRELWLTR 255 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIAQRRDIAPRRILPDSAII+AA+A+P ++++LVALPVFGGRNQRRSAA W AAL AAR Sbjct 256 DRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQRRSAATWLAALDAAR 315 Query 320 ESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVR 379 +S +PP +EP NGPPPP RW RRKP AAARL+AARAAL EVS+RV VPTENLV+PDLVR Sbjct 316 QSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSERVHVPTENLVAPDLVR 375 Query 380 RLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQGDDG 437 RLCW+WE +PDP AAV+A+L G AR WQ ELV P+L AL P DDG Sbjct 376 RLCWDWE----PTPDPFAAVDAFLCAGHARPWQRELVDPVLARALQ-QPLPAVADDDG 428 >gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A] gi|298495945|gb|EFI31239.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A] Length=375 Score = 544 bits (1401), Expect = 1e-152, Method: Compositional matrix adjust. Identities = 273/274 (99%), Positives = 273/274 (99%), Gaps = 0/274 (0%) Query 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER Sbjct 1 MCPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAER 60 Query 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP Sbjct 61 ASGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLP 120 Query 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL Sbjct 121 CLAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWL 180 Query 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI Sbjct 181 NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGI 240 Query 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRIL 274 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRR L Sbjct 241 HKVHDRRGLAAVRELWTARDRIAQRRDIAPRRDL 274 >gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1] gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1] Length=426 Score = 539 bits (1388), Expect = 5e-151, Method: Compositional matrix adjust. Identities = 279/397 (71%), Positives = 325/397 (82%), Gaps = 6/397 (1%) Query 22 PLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEAG 81 PLLRP G+PD+ V+ EIA AA+LL G GPFAVDAERASGFRYS RAYL+QIRRA AG Sbjct 25 PLLRPRDGVPDVSVSRYEIAKAADLLASGHGPFAVDAERASGFRYSNRAYLVQIRRAGAG 84 Query 82 TVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGRL 141 +VLIDPVSHGGDPL VLAPVAEVLS EW+LH+ADQDLPCLAE+GMRPP+LYDTELAGRL Sbjct 85 SVLIDPVSHGGDPLEVLAPVAEVLSDAEWVLHAADQDLPCLAEIGMRPPSLYDTELAGRL 144 Query 142 AGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVL 201 A ++RVNLAAMV+RLLGL LTKGHGAADWSKRPLP WLNYAALDVE+L++LR AIS VL Sbjct 145 ANYERVNLAAMVQRLLGLQLTKGHGAADWSKRPLPQDWLNYAALDVEVLVDLRHAISEVL 204 Query 202 AEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDR 261 EQGK WAA+EFE+LR+ E+ P R+DRWRRTSGIHKV D R LAAVRELWT RD+ Sbjct 205 QEQGKEGWAAEEFEYLRTVEATP----TRRDRWRRTSGIHKVRDPRALAAVRELWTTRDQ 260 Query 262 IAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARES 321 IA+RRDIAP RILPDSAI++AA A+P +++ L ALP+FGG QRRSAAVW ALA AR S Sbjct 261 IARRRDIAPGRILPDSAIVNAATANPDTIEKLTALPIFGGSKQRRSAAVWLDALARARTS 320 Query 322 PDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRL 381 +PP++ EP+NGPPP RW RRKP AA RL+AAR L ++ RV VP ENL+SP++VRRL Sbjct 321 -EPPDVQEPSNGPPPASRWARRKPEAAVRLEAARTELAALADRVSVPVENLLSPEIVRRL 379 Query 382 CWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVP 418 CW+W+ + + AAV+A+LR AR WQ ELVVP Sbjct 380 CWDWKPV-EGVDATAAAVDAFLRDSAARRWQRELVVP 415 >gi|289758809|ref|ZP_06518187.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis T85] gi|289714373|gb|EFD78385.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis T85] Length=277 Score = 536 bits (1381), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 276/276 (100%), Positives = 276/276 (100%), Gaps = 0/276 (0%) Query 163 KGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFES 222 KGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFES Sbjct 2 KGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFES 61 Query 223 RPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDA 282 RPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDA Sbjct 62 RPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDA 121 Query 283 AIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVR 342 AIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVR Sbjct 122 AIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVR 181 Query 343 RKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAY 402 RKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAY Sbjct 182 RKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAY 241 Query 403 LRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS 438 LRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS Sbjct 242 LRTGQARAWQLELVVPILTAALTGAPDAGAQGDDGS 277 >gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155] gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155] Length=415 Score = 534 bits (1376), Expect = 1e-149, Method: Compositional matrix adjust. Identities = 276/408 (68%), Positives = 326/408 (80%), Gaps = 8/408 (1%) Query 17 ESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIR 76 E+E TPLL PA G+P+LCV+ EIA AA L G GPFA+DAERASGFRYS RAYL+QIR Sbjct 13 EAEATPLLTPAEGVPELCVSADEIAGAARQLAGGSGPFAIDAERASGFRYSNRAYLVQIR 72 Query 77 RAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTE 136 RA AGT LIDPV+HGG P+ L PVA+ L+ +EW+LH+ADQDLPCLAE+G+RP LYDTE Sbjct 73 RAGAGTALIDPVNHGGSPIDTLEPVAQTLADDEWVLHAADQDLPCLAEIGLRPGKLYDTE 132 Query 137 LAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAA 196 LAGRLAGF+RVNLAAMV+RLLGL L KGHGAADWSKRPLP WLNYAALDVE+L+ELR A Sbjct 133 LAGRLAGFERVNLAAMVQRLLGLQLMKGHGAADWSKRPLPDEWLNYAALDVEVLLELRHA 192 Query 197 ISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELW 256 I+ VL EQGKT+WAAQEFEHLR++ ++P R+DRWRRTSGIHKV + R LAAVRELW Sbjct 193 IAAVLEEQGKTEWAAQEFEHLRTYVAQP----TRRDRWRRTSGIHKVRNPRALAAVRELW 248 Query 257 TARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALA 316 T RD IA+ RDIAP RILPD+AII+AA DPK+ +L ALPVFGG QRRSA VW AL Sbjct 249 TTRDNIARSRDIAPGRILPDAAIINAATVDPKTTAELTALPVFGGAKQRRSAQVWLDALN 308 Query 317 AARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPD 376 AR++PDPP +E +NGPPP RW RRKP AAARL+AARA L E+S+RV VP ENL++P+ Sbjct 309 RARQNPDPPSASEASNGPPPAARWARRKPEAAARLEAARAGLAELSERVSVPAENLITPE 368 Query 377 LVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 +VRRLCW+W+ ++ D + VE +L Q R WQ EL VP+LT AL Sbjct 369 VVRRLCWDWQPVA----DVASTVEEFLVDNQVRPWQRELTVPVLTVAL 412 >gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS] gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS] gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS] gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS] gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS] gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS] Length=428 Score = 522 bits (1344), Expect = 5e-146, Method: Compositional matrix adjust. Identities = 286/410 (70%), Positives = 329/410 (81%), Gaps = 8/410 (1%) Query 15 GTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQ 74 GT++ PLL PA G+PDL VT EI AAAELL G GPFA+DAERASGFRYS RAYL+Q Sbjct 21 GTDTGAVPLLTPADGVPDLAVTTDEILAAAELLAGGHGPFAIDAERASGFRYSNRAYLVQ 80 Query 75 IRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYD 134 IRR AGTVLIDPV+HG DP V+APVA+VL T+EW+LH+ADQDLPCLAE+GMRPP LYD Sbjct 81 IRREGAGTVLIDPVNHGEDPTMVMAPVADVLDTDEWVLHAADQDLPCLAELGMRPPKLYD 140 Query 135 TELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELR 194 TELAGRLAG RVNLA MV LLGL L KGHGAADWSKRPLP WLNYAALDVE+L+ELR Sbjct 141 TELAGRLAGLARVNLATMVSELLGLQLMKGHGAADWSKRPLPDDWLNYAALDVEVLLELR 200 Query 195 AAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRE 254 A++ VL +QGKTDWA QEFEHLR++E+ P R+DRWRRTSGIHKV + R LAAVRE Sbjct 201 DAVAAVLDDQGKTDWAIQEFEHLRTYEAAP----TRRDRWRRTSGIHKVRNPRALAAVRE 256 Query 255 LWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAA 314 LWT RD IA+RRDIAP RILPD+AII+AA ADP SV+ L ALPVFGG QRRSA VW A Sbjct 257 LWTTRDHIARRRDIAPGRILPDAAIINAATADPDSVEKLTALPVFGGTRQRRSAQVWLDA 316 Query 315 LAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVS 374 L AR + DPP+ AEP NGPPPP RW RRKP AAARL+AARA L+ +S+RV VP+ENLV+ Sbjct 317 LDRARHNTDPPDSAEPPNGPPPPSRWARRKPEAAARLEAARAGLSALSERVAVPSENLVT 376 Query 375 PDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 P++VRRLCW+W+ ++ D AAVE +L R WQ +LVVP+LTAAL Sbjct 377 PEVVRRLCWDWQPVT----DIAAAVEEFLVAAGVRPWQRDLVVPVLTAAL 422 >gi|333991066|ref|YP_004523680.1| hypothetical protein JDM601_2426 [Mycobacterium sp. JDM601] gi|333487034|gb|AEF36426.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=420 Score = 508 bits (1309), Expect = 5e-142, Method: Compositional matrix adjust. Identities = 301/416 (73%), Positives = 342/416 (83%), Gaps = 7/416 (1%) Query 17 ESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIR 76 E EPTPL PA G+P++ VT +I AAAE L G GPFAVDAERASGFRYS RAYLIQIR Sbjct 12 EPEPTPLPHPADGVPEVSVTTRQIGAAAEKLAGGHGPFAVDAERASGFRYSNRAYLIQIR 71 Query 77 RAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTE 136 RA AGTVLIDPV G DP +L PVAEVL +EWILH+ADQDL CLAEVGM P ALYDTE Sbjct 72 RAGAGTVLIDPVGAGSDPAALLRPVAEVLDDDEWILHAADQDLACLAEVGMWPKALYDTE 131 Query 137 LAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAA 196 LAGRLAGFDRVNLAAMV+RLLGLGL KGHGAADWSKRPLP+ WLNYAALDVE+LIELR A Sbjct 132 LAGRLAGFDRVNLAAMVQRLLGLGLAKGHGAADWSKRPLPAEWLNYAALDVEVLIELREA 191 Query 197 ISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELW 256 I+ VL+ QGK+DWAAQEF HLRS + + R+DRWRRTSGIHKV DRRGLAAVRELW Sbjct 192 IAEVLSGQGKSDWAAQEFSHLRSTDF---ITSTRRDRWRRTSGIHKVRDRRGLAAVRELW 248 Query 257 TARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALA 316 T RDRIA+RRDIAP RILPD+AII AA+ADP +VD+L+ALPVFGG QRRSAA W AALA Sbjct 249 TVRDRIAERRDIAPGRILPDAAIIAAAVADPTTVDELLALPVFGGPKQRRSAATWLAALA 308 Query 317 AARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPD 376 AAR++P+PP+ AEP +GPPPP RW RRKP AAARL+AAR AL ++S++V VPTENL+SPD Sbjct 309 AARDNPEPPDSAEPPSGPPPPSRWSRRKPEAAARLEAARGALGQLSEQVSVPTENLLSPD 368 Query 377 LVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGA 432 L+RRLCW+W S ++PDP A+E +L TG AR WQ +L VP+L AL GA AG Sbjct 369 LLRRLCWDW---SAATPDPAVAIEEFLNTGGARPWQRQLTVPLLAQAL-GATVAGG 420 >gi|289762852|ref|ZP_06522230.1| conserved alanine rich protein [Mycobacterium tuberculosis GM 1503] gi|289710358|gb|EFD74374.1| conserved alanine rich protein [Mycobacterium tuberculosis GM 1503] Length=259 Score = 501 bits (1289), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 258/259 (99%), Positives = 259/259 (100%), Gaps = 0/259 (0%) Query 180 LNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSG 239 +NYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSG Sbjct 1 MNYAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSG 60 Query 240 IHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVF 299 IHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVF Sbjct 61 IHKVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVF 120 Query 300 GGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALT 359 GGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALT Sbjct 121 GGRNQRRSAAVWWAALAAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALT 180 Query 360 EVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI 419 EVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI Sbjct 181 EVSQRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI 240 Query 420 LTAALTGAPDAGAQGDDGS 438 LTAALTGAPDAGAQGDDGS Sbjct 241 LTAALTGAPDAGAQGDDGS 259 >gi|169630071|ref|YP_001703720.1| hypothetical protein MAB_2988 [Mycobacterium abscessus ATCC 19977] gi|169242038|emb|CAM63066.1| Conserved hypothetical protein (putative exonuclease) [Mycobacterium abscessus] Length=400 Score = 481 bits (1237), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 252/406 (63%), Positives = 301/406 (75%), Gaps = 16/406 (3%) Query 19 EPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRA 78 EPTPLLRPA G+P + + EI AAA+ L G GPFAVDAERASGFRYS RAYLIQIRR Sbjct 9 EPTPLLRPAEGVPPITASTDEIRAAAQRLISGTGPFAVDAERASGFRYSNRAYLIQIRRR 68 Query 79 EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELA 138 AGTVL+DP + G L P+ + L +EWILH+ADQDLPCLAE+ M+PP+LYDTELA Sbjct 69 GAGTVLLDPTNVPGS----LGPIVDALGADEWILHAADQDLPCLAELAMKPPSLYDTELA 124 Query 139 GRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAIS 198 GRLAGF++VNLA+MV RLLGLGL KGHGAADWSKRPLP WLNYAALDVE+L+ELR I+ Sbjct 125 GRLAGFEKVNLASMVHRLLGLGLAKGHGAADWSKRPLPDDWLNYAALDVEVLVELRDKIA 184 Query 199 RVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTA 258 VLAEQGKT+WA QEFEHL + P A R+D WRRTSGIHKV LAAVRELW + Sbjct 185 EVLAEQGKTEWARQEFEHL----AHTPVPATRRDNWRRTSGIHKVRKPGQLAAVRELWLS 240 Query 259 RDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAA 318 RD +A+ RD+AP R LPDSAI++AA+ADPK+ +L+ALPVFGG Q++ A W AALA A Sbjct 241 RDELARARDVAPGRTLPDSAIVEAALADPKTRAELIALPVFGGPRQKQQADRWLAALAKA 300 Query 319 RESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDLV 378 R PP + EP GPPP RW RRKP A ARL+AAR AL +S+++ VP EN+V+P++V Sbjct 301 RSGTAPPPVNEPTTGPPPVSRWSRRKPEAYARLEAARTALAALSEQISVPVENIVTPEIV 360 Query 379 RRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 RR+CW+W D V+ L AR WQ +L VP+LT AL Sbjct 361 RRICWDW--------DGHGDVDEQLAGHGARPWQRQLTVPLLTEAL 398 >gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707] gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707] Length=413 Score = 440 bits (1131), Expect = 3e-121, Method: Compositional matrix adjust. Identities = 247/411 (61%), Positives = 298/411 (73%), Gaps = 13/411 (3%) Query 18 SEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRR 77 + P PLL PA G+P + T + AAE L G GP AVDAERASGFRYS RAYL+Q+RR Sbjct 8 TTPVPLLVPADGVPPVIETAAGVRDAAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRR 67 Query 78 AEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTEL 137 A AG+ L+DP+ D L P+ + ++ EW+LHSADQDLPCLAE+G+ P AL+DTEL Sbjct 68 AGAGSFLLDPIPTAED----LEPLRDAINGLEWVLHSADQDLPCLAELGLEPAALFDTEL 123 Query 138 AGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAI 197 AGRLAGF+RV LAA+VER LGL L KGHGAADWS RPLP AWLNYAALDVE+L+ELR A+ Sbjct 124 AGRLAGFERVGLAAIVERTLGLELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAM 183 Query 198 SRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWT 257 + LA QGKT+WAAQEFEH+R P + DRWRRTS IH + R LAAVRELWT Sbjct 184 ATELAAQGKTEWAAQEFEHVRLAG----PPQPKPDRWRRTSQIHSLKSPRQLAAVRELWT 239 Query 258 ARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAA 317 RD IA++RDI+P RILPDSAI+ AA ADPKS+D L ALPVFGG QRRS+ +W AL Sbjct 240 TRDEIARKRDISPSRILPDSAIVTAASADPKSIDTLRALPVFGGPRQRRSSRIWLGALER 299 Query 318 ARESP--DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSP 375 AR P + P + +P GPPPP RW +R P AAARL A+ + E+S+RV VP ENL+SP Sbjct 300 ARALPQNELPPVNQPFTGPPPPSRWTKRDPDAAARLATAKTGIAELSERVGVPVENLLSP 359 Query 376 DLVRRLCWEWEDISQSSP--DPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 DLVRR+CWE + ++P + AAV+A L G AR WQ +L+VPIL AL Sbjct 360 DLVRRVCWE-PPATPTTPDAEAAAAVDAALAAGGARPWQRDLMVPILVEAL 409 >gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S] gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S] Length=445 Score = 439 bits (1129), Expect = 4e-121, Method: Compositional matrix adjust. Identities = 247/411 (61%), Positives = 298/411 (73%), Gaps = 13/411 (3%) Query 18 SEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRR 77 + P PLL PA G+P + T + AAE L G GP AVDAERASGFRYS RAYL+Q+RR Sbjct 40 TTPVPLLVPADGVPPVIETAAGVRDAAERLAAGTGPLAVDAERASGFRYSSRAYLVQLRR 99 Query 78 AEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTEL 137 A AG+ L+DP+ D L P+ + ++ EW+LHSADQDLPCLAE+G+ P AL+DTEL Sbjct 100 AGAGSFLLDPIPTAED----LEPLRDAINGLEWVLHSADQDLPCLAELGLEPAALFDTEL 155 Query 138 AGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAI 197 AGRLAGF+RV LAA+VER LGL L KGHGAADWS RPLP AWLNYAALDVE+L+ELR A+ Sbjct 156 AGRLAGFERVGLAAIVERTLGLELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAM 215 Query 198 SRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWT 257 + LA QGKT+WAAQEFEH+R P + DRWRRTS IH + R LAAVRELWT Sbjct 216 ATELAAQGKTEWAAQEFEHVRLAG----PPQPKPDRWRRTSQIHSLKSPRQLAAVRELWT 271 Query 258 ARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAA 317 RD IA++RDI+P RILPDSAI+ AA ADPKS+D L ALPVFGG QRRS+ +W AL Sbjct 272 TRDEIARKRDISPSRILPDSAIVTAASADPKSIDTLRALPVFGGPRQRRSSRIWLGALER 331 Query 318 ARESP--DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSP 375 AR P + P + +P GPPPP RW +R P AAARL A+ + E+S+RV VP ENL+SP Sbjct 332 ARALPQNELPPVNQPFTGPPPPSRWAKRDPDAAARLATAKTGIAELSERVGVPVENLLSP 391 Query 376 DLVRRLCWEWEDISQSSP--DPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 DLVRR+CWE + ++P + AAV+A L G AR WQ +L+VPIL AL Sbjct 392 DLVRRVCWE-PPATPTTPDAEAAAAVDAALAAGGARPWQRDLMVPILVEAL 441 >gi|111023812|ref|YP_706784.1| ribonuclease III [Rhodococcus jostii RHA1] gi|110823342|gb|ABG98626.1| probable ribonuclease III [Rhodococcus jostii RHA1] Length=429 Score = 423 bits (1087), Expect = 4e-116, Method: Compositional matrix adjust. Identities = 246/432 (57%), Positives = 295/432 (69%), Gaps = 16/432 (3%) Query 11 AESEGTESEP----TPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRY 66 A S G EP PLL P G+PD+ T +A AA L G GP AVDAERASGFRY Sbjct 8 ASSPGPAEEPGRQIVPLLAPRDGVPDVVTTAEGVAKAAAALSEGTGPLAVDAERASGFRY 67 Query 67 SGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVG 126 S RAYL+Q+RR AGTVL+DP+ D LAP+AEV++ EWILHSADQDLP LAE+G Sbjct 68 SARAYLVQLRREGAGTVLLDPIPTAAD----LAPLAEVINPLEWILHSADQDLPGLAEIG 123 Query 127 MRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALD 186 + P L+DTELAGRLAGF+RV LAA+VER LGL L KGHGAADWSKRPLP +WLNYAALD Sbjct 124 LAPATLFDTELAGRLAGFERVGLAAIVERTLGLELRKGHGAADWSKRPLPDSWLNYAALD 183 Query 187 VELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDR 246 VE+L+ELR ++ L EQGK++WAAQEFEH+R P P A DRWRRTS I + + Sbjct 184 VEVLVELRNVMAAELDEQGKSEWAAQEFEHIR-LAGPPKPKA---DRWRRTSHITSLKTQ 239 Query 247 RGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRR 306 R LAA R LW AR+ +A++RD++P R+LPD+AIIDAA DP+S++ L ALPVFGG QRR Sbjct 240 RQLAAARSLWQAREDLARKRDVSPSRVLPDAAIIDAATKDPRSIEALRALPVFGGPRQRR 299 Query 307 SAAVWWAALAAARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQR 364 + +W AL AR PD P P GPPP RW R P AA RL AARAAL + Sbjct 300 HSRIWLQALEDARALPDTELPPKTPPFTGPPPASRWARHDPDAAERLTAARAALAALGTE 359 Query 365 VRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 V VP ENLV+P+LVRRLCW+W + D +A++ L G AR WQ L VP+L +AL Sbjct 360 VSVPVENLVTPELVRRLCWDWS--APEGGDVESAIDRVLDAGGARPWQRMLTVPVLASAL 417 Query 425 TGAPDAGAQGDD 436 A + GDD Sbjct 418 LSAAEQKGSGDD 429 >gi|229491276|ref|ZP_04385102.1| ribonuclease D [Rhodococcus erythropolis SK121] gi|229321815|gb|EEN87610.1| ribonuclease D [Rhodococcus erythropolis SK121] Length=431 Score = 421 bits (1081), Expect = 2e-115, Method: Compositional matrix adjust. Identities = 235/416 (57%), Positives = 290/416 (70%), Gaps = 19/416 (4%) Query 18 SEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRR 77 S+ PLL P G+PD+ T +A AA L G GP AVDAERASGFRYS RAYLIQ+RR Sbjct 15 SDVVPLLVPRDGVPDVITTAAGVADAAAALASGHGPLAVDAERASGFRYSARAYLIQLRR 74 Query 78 AEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTEL 137 AG+ L+DP+ D L P+AEV++ +W+LHSADQDLP LAE+G+ P L+DTEL Sbjct 75 EGAGSFLLDPIPTAQD----LQPLAEVINPLQWVLHSADQDLPGLAELGLTPAELFDTEL 130 Query 138 AGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAI 197 AGRLAGF+RV LAA+VER L + L KGHGAADWS RPLP AWLNYAALDVE+L+ELR A+ Sbjct 131 AGRLAGFERVGLAAIVERTLRVELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELRDAM 190 Query 198 SRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWT 257 L QGK +WA +EFE++R P P + DRWRRTS I + R LAAVR LW Sbjct 191 EAELESQGKLEWAKEEFEYIR-LAGPPKP---KPDRWRRTSHITSLKTTRQLAAVRALWQ 246 Query 258 ARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAA 317 AR+ +A++RD++P R+LPDSAIIDAA+ DP+S+D L +LPVFGG QRR + +W AL A Sbjct 247 AREDLARKRDVSPSRVLPDSAIIDAALKDPRSLDALRSLPVFGGPRQRRYSRIWMDALEA 306 Query 318 ARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSP 375 AR PD P P GPP GRW R+ PAAA RL AARAAL+++S+ V VP ENL+ P Sbjct 307 ARRLPDSELPPKTPPIVGPPAAGRWARQDPAAADRLTAARAALSDLSKEVSVPVENLLQP 366 Query 376 DLVRRLCWEWE-----DISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTG 426 DLVRRLCW+W+ DI++ +A+E L +G AR WQ L VP+L AL Sbjct 367 DLVRRLCWDWKLEPDSDIAEVE----SAIETKLTSGGARGWQRTLTVPVLAEALNS 418 >gi|226306331|ref|YP_002766291.1| ribonuclease D [Rhodococcus erythropolis PR4] gi|226185448|dbj|BAH33552.1| putative ribonuclease D [Rhodococcus erythropolis PR4] Length=429 Score = 420 bits (1079), Expect = 3e-115, Method: Compositional matrix adjust. Identities = 236/417 (57%), Positives = 291/417 (70%), Gaps = 21/417 (5%) Query 18 SEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRR 77 S+ PLL P G+PD+ T +A AA L G GP AVDAERASGFRYS RAYLIQ+RR Sbjct 13 SDVVPLLVPRDGVPDVITTAAGVADAAAALASGHGPLAVDAERASGFRYSARAYLIQLRR 72 Query 78 AEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTEL 137 AG+ L+DP+ D L P+AE ++ +W+LHSADQDLP LAE+G+ P L+DTEL Sbjct 73 EGAGSFLLDPIPTAQD----LQPLAEAINPLQWVLHSADQDLPGLAELGLTPAELFDTEL 128 Query 138 AGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAI 197 AGRLAGF+RV LAA+VER L + L KGHGAADWS RPLP AWLNYAALDVE+L+ELR A+ Sbjct 129 AGRLAGFERVGLAAIVERTLRVELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELRDAM 188 Query 198 SRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWT 257 L QGK +WA +EFE++R P P + DRWRRTS I + R LAAVR LW Sbjct 189 EAELESQGKLEWAKEEFEYIR-LAGPPKP---KPDRWRRTSHITSLKTTRQLAAVRALWQ 244 Query 258 ARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAA 317 AR+ +A++RD++P R+LPDSAIIDAA+ DP+S+D L +LPVFGG QRR + VW AL A Sbjct 245 AREDLARKRDVSPSRVLPDSAIIDAALKDPQSLDALRSLPVFGGPRQRRYSRVWMDALEA 304 Query 318 ARESPD---PPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVS 374 AR PD PP+ P GPP GRW R+ PAAA RL AARAAL+++S+ V VP ENL+ Sbjct 305 ARRLPDSELPPKTP-PIVGPPAAGRWARQDPAAADRLTAARAALSDLSKEVSVPVENLLQ 363 Query 375 PDLVRRLCWEWE-----DISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTG 426 PDLVRRLCW+W+ DI++ +A+E L +G AR WQ L VP+L AL Sbjct 364 PDLVRRLCWDWKLEPDSDITEVE----SAIETKLTSGGARGWQRTLTVPVLAEALNS 416 >gi|54025710|ref|YP_119952.1| putative RNase D [Nocardia farcinica IFM 10152] gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152] Length=424 Score = 419 bits (1076), Expect = 6e-115, Method: Compositional matrix adjust. Identities = 252/418 (61%), Positives = 296/418 (71%), Gaps = 15/418 (3%) Query 15 GTESEPT--PLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYL 72 G E P+ PLL P G+P + T E+AAAA + G GP AVDAERASGFRYS RAYL Sbjct 10 GIEDTPSAEPLLAPVDGVPPVLATAAEVAAAAARIAAGTGPLAVDAERASGFRYSARAYL 69 Query 73 IQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPAL 132 IQ+RRA AGT L+DP+ L P+AE ++ EW+LHSADQDLP LAE+G+RP L Sbjct 70 IQLRRAGAGTFLVDPIPVA----DALGPLAEAINDLEWVLHSADQDLPGLAELGLRPARL 125 Query 133 YDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIE 192 +DTEL GRLAGF+RV LAAMVERLLG L KGHGAADWS RPLP+ WLNYAALDVELL+E Sbjct 126 FDTELGGRLAGFERVGLAAMVERLLGRTLRKGHGAADWSTRPLPAEWLNYAALDVELLLE 185 Query 193 LRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAV 252 LR A++ L QGK+DWAAQEFEH+R+ E P A + DRWRRTSGIH + R LA V Sbjct 186 LRDAVAAELQRQGKSDWAAQEFEHVRTTE----PPAPKADRWRRTSGIHTLRKPRQLAIV 241 Query 253 RELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWW 312 RELWT RD +A+ RDIAP RILPD AI+ AA ADP+S+ L ALPVFGG QRR + W Sbjct 242 RELWTTRDTLARSRDIAPARILPDGAIVAAAAADPRSIAQLRALPVFGGPRQRRYSREWL 301 Query 313 AALAAARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTE 370 AA+ AR PD P + +P +GPPPP RW RR P AAARL ARAA+ E+S VP E Sbjct 302 AAVDRARALPDDALPPLTQPFDGPPPPNRWERRDPVAAARLTRARAAMAELSTEHAVPVE 361 Query 371 NLVSPDLVRRLCWEWEDISQSSPDP---IAAVEAYLRTGQARAWQLELVVPILTAALT 425 NL+SPDLVRRLCW+ DP AA++ +L++G AR WQ EL VP LT ALT Sbjct 362 NLLSPDLVRRLCWDGLPDYDRVGDPGDLAAAIDGFLKSGGARPWQRELTVPRLTLALT 419 >gi|226366248|ref|YP_002784031.1| ribonuclease [Rhodococcus opacus B4] gi|226244738|dbj|BAH55086.1| putative ribonuclease [Rhodococcus opacus B4] Length=428 Score = 418 bits (1074), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 246/422 (59%), Positives = 291/422 (69%), Gaps = 21/422 (4%) Query 21 TPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAEA 80 PLL P G+PD+ T +A AA L G GP AVDAERASGFRYS RAYL+Q+RR A Sbjct 22 VPLLAPRDGVPDVVTTAEGVAKAAAALSEGTGPLAVDAERASGFRYSARAYLVQLRREGA 81 Query 81 GTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAGR 140 GTVL+DP+ D LAP+AEV++ EWILHSADQDLP LAE+G+ P L+DTELAGR Sbjct 82 GTVLLDPIPTAAD----LAPLAEVINPLEWILHSADQDLPGLAEIGLAPATLFDTELAGR 137 Query 141 LAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISRV 200 LAGF+RV LAA+VER LG L KGHGAADWSKRPLP WLNYAALDVE+L+ELR A++ Sbjct 138 LAGFERVGLAAIVERTLGFELRKGHGAADWSKRPLPDTWLNYAALDVEVLVELRNAMAAE 197 Query 201 LAEQGKTDWAAQEFEHLR-SFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 L EQGK+DWAAQEFEH+R + RP P DRWRRTS I + +R LAAVR LW AR Sbjct 198 LGEQGKSDWAAQEFEHIRLAGPPRPKP-----DRWRRTSHITSLKTQRQLAAVRSLWQAR 252 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 + +A++RD++P R+LPDSAIIDAA DP+S++ L ALPVFGG QRR + +W AL AR Sbjct 253 EDLARKRDVSPSRVLPDSAIIDAATKDPRSIEALRALPVFGGPRQRRHSRIWLQALEDAR 312 Query 320 ESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDL 377 PD P P GPPP RW R P AA RL AARAAL + V VP ENLV+P+L Sbjct 313 ALPDSELPPKTPPFTGPPPASRWARHDPDAAERLTAARAALAALGAEVSVPVENLVTPEL 372 Query 378 VRRLCWEW---EDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDAGAQG 434 VRRLCW+W ED ++ AA++ L G AR WQ L VP L AL A + G Sbjct 373 VRRLCWDWSVPEDGAE------AAIDRVLDAGGARPWQRMLTVPRLATALRAAAEQKGAG 426 Query 435 DD 436 DD Sbjct 427 DD 428 >gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395] Length=407 Score = 386 bits (992), Expect = 3e-105, Method: Compositional matrix adjust. Identities = 216/419 (52%), Positives = 272/419 (65%), Gaps = 22/419 (5%) Query 10 AAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGR 69 A S+ E TPL RP G+P + E A AAEL+ RG GP AVD ERASG+RYS R Sbjct 6 AGPSDQGAPEITPLTRPHDGVPTVLSRPDEFAEAAELIGRGTGPIAVDTERASGYRYSQR 65 Query 70 AYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRP 129 AYL+Q++RA +G+ LIDP+SH L+P+ + L EWILH+ADQDLPCL E+G P Sbjct 66 AYLVQLKRAGSGSFLIDPISHP----DALSPLIDALDGPEWILHAADQDLPCLRELGFTP 121 Query 130 PALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVEL 189 L+DTELAGRL +VNLAAMV L LGL KGHGAADWS+RPLP WLNYAALDVE+ Sbjct 122 TTLFDTELAGRLLNIPKVNLAAMVAEFLHLGLAKGHGAADWSRRPLPDDWLNYAALDVEV 181 Query 190 LIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGL 249 L+ELR A++ L+E G+ +WAAQEF ++ + PP+A + DRWRRTS IH + R L Sbjct 182 LVELRDAVADALSEAGRDEWAAQEFAYVLAR----PPSAPKPDRWRRTSNIHDLRSARQL 237 Query 250 AAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAA 309 A VRELWTAR+ +A RD+AP R+LPDSAII AA A+P L LPVFGG QRR A Sbjct 238 AVVRELWTAREELAALRDVAPGRVLPDSAIITAATANPVDGKALTRLPVFGGPRQRRQAD 297 Query 310 VWWAALAAARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRV 367 W A++ A+ P+ P P GPPP RW +R P AAAR +A R + +++ + + Sbjct 298 RWMRAISTAQRLPESELPSKKSPQVGPPPYNRWEQRNPEAAARANAVRPVVRTIAEEIGI 357 Query 368 PTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEA--YLRTGQARAWQLELVVPILTAAL 424 P ENL++PDL+R LCW D +A +A +L AR WQ ELV + AL Sbjct 358 PQENLLAPDLLRNLCW----------DGLAGDDAGSWLAAHGARPWQRELVAEPIDDAL 406 >gi|294815677|ref|ZP_06774320.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064] gi|326444024|ref|ZP_08218758.1| ribonuclease D [Streptomyces clavuligerus ATCC 27064] gi|294328276|gb|EFG09919.1| putative ribonuclease D [Streptomyces clavuligerus ATCC 27064] Length=428 Score = 383 bits (984), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 225/414 (55%), Positives = 275/414 (67%), Gaps = 17/414 (4%) Query 17 ESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIR 76 E+ PTPLL P GIP + +AA G GP AVDAERASG+RY RAYL+Q+R Sbjct 29 EAPPTPLLEPREGIPAVVADADALAAVTAAFGAGSGPVAVDAERASGYRYGQRAYLVQLR 88 Query 77 RAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTE 136 RA AG+ LIDPV+ L+P+ E L EWILH+A QDLPCL ++GM P L+DTE Sbjct 89 RAGAGSALIDPVA-----CPDLSPLGEALDGAEWILHAATQDLPCLRDIGMAPALLFDTE 143 Query 137 LAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAA 196 LAGRLAGF RV L AMVE +LG L KGH A DWS RPLP WL YAALDVELLI+LR A Sbjct 144 LAGRLAGFPRVGLGAMVESVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLIDLRDA 203 Query 197 ISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELW 256 + LAEQGK +WA QEF + + A R+D WRRTSG+HKV RR +A VRELW Sbjct 204 LEEELAEQGKLEWARQEFAAIAAAPP----PAPRKDPWRRTSGMHKVRRRRQMAVVRELW 259 Query 257 TARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAAL- 315 TARD +AQRRD++P ++L DSAII+AA+A P +V L ALP FG R RR W +A+ Sbjct 260 TARDAVAQRRDVSPGKVLSDSAIIEAALAVPPTVQALTALPGFGHRMGRRQLEQWQSAVD 319 Query 316 -AAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVS 374 A A + P+ +P NGPPPP W + P AAARL AAR A++E+++R+ +P ENL++ Sbjct 320 RAKALSESELPQPGQPLNGPPPPRAWADKDPVAAARLSAARTAVSELAERLNLPQENLIT 379 Query 375 PDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL-TGA 427 PD VRR+CWE + AAV A L AR WQ+ELV P+L AL TGA Sbjct 380 PDTVRRVCWE-----PPAERSEAAVAAALAGFGARPWQIELVAPLLAQALATGA 428 >gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017] gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017] Length=413 Score = 381 bits (979), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 233/422 (56%), Positives = 281/422 (67%), Gaps = 21/422 (4%) Query 9 GAAESEGT--ESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRY 66 A S GT +S P PL PA G PD+ + AA E L G G AVD ERASG+RY Sbjct 3 NADHSSGTPGDSAPLPLTEPAEGTPDVIADPDTLRAACERLAEGSGALAVDTERASGYRY 62 Query 67 SGRAYLIQIRRAEAGTVLIDPVSHGGDPL-TVLAPVAEVLSTNEWILHSADQDLPCLAEV 125 +AYLIQIRR AGT LIDP+ PL P+AEV++ EW+LH+A QDLPCLAE+ Sbjct 63 WPKAYLIQIRREGAGTFLIDPI-----PLRDHFTPLAEVMNQVEWVLHAASQDLPCLAEL 117 Query 126 GMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAAL 185 G+ PP+L+DTELAGRLAG+ RV L +VE LLG L KGH AADWS+RPLP WLNYAAL Sbjct 118 GLHPPSLFDTELAGRLAGYQRVALGTLVESLLGYQLEKGHSAADWSRRPLPLDWLNYAAL 177 Query 186 DVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHD 245 DVELL+ LR + LA GK +WA QEFE +R+ ++PP A R + WRRTSGIHKV Sbjct 178 DVELLLPLREKLEEELAASGKLEWARQEFEAVRT--AKPP--APRAEPWRRTSGIHKVRT 233 Query 246 RRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQR 305 RGLAAVR LW ARD +A+RRD AP RILPDSAII+A +AD ++ DL LPVF GR QR Sbjct 234 ARGLAAVRALWEARDELARRRDRAPGRILPDSAIINAVLADARTSADLEKLPVFRGRVQR 293 Query 306 RSAAVWWAALAAARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQ 363 + A W L AR P+ P A +GPPPP RW + P AAARL AA+AAL ++++ Sbjct 294 KQATHWLRQLQRARTLPESELPSTAVTYDGPPPPNRWAEKNPDAAARLAAAKAALADIAE 353 Query 364 RVRVPTENLVSPDLVRRLCWE-WEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTA 422 R R+P ENL+ P+LVRRLCW+ ED S+ S V L G AR WQ+EL L+ Sbjct 354 RNRLPVENLLLPELVRRLCWQPPEDTSRES------VATALAEGGARPWQIELTAAELSK 407 Query 423 AL 424 AL Sbjct 408 AL 409 >gi|343924647|ref|ZP_08764191.1| ribonuclease D [Gordonia alkanivorans NBRC 16433] gi|343765447|dbj|GAA11117.1| ribonuclease D [Gordonia alkanivorans NBRC 16433] Length=428 Score = 381 bits (979), Expect = 1e-103, Method: Compositional matrix adjust. Identities = 227/408 (56%), Positives = 277/408 (68%), Gaps = 14/408 (3%) Query 19 EPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRA 78 E PLL PAGG+P + T E A AA L G GP AVD ERASG+RYS RAYLIQI+R Sbjct 21 EVEPLLAPAGGVPPVLSTAAEFADAARALAAGEGPIAVDTERASGYRYSQRAYLIQIKRR 80 Query 79 EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELA 138 +G+ L+DP++ DP LAPV + L EW+LH+ADQDLPCL E+G LYDTELA Sbjct 81 GSGSFLLDPIA---DP-EALAPVIDALRGPEWVLHAADQDLPCLRELGFECVELYDTELA 136 Query 139 GRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAIS 198 GRL G +VNLAAMV + LGLGL KGHGAADWS+RPLP WLNYAALDVE+L+ELR A+ Sbjct 137 GRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWLNYAALDVEVLVELRDAMD 196 Query 199 RVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTA 258 LAE GK WA +EF ++ S PPA R DRWR+TS IH V R LAAVRELWTA Sbjct 197 AALAESGKDGWAREEFAYVLSR----PPAPPRTDRWRKTSNIHTVKSARALAAVRELWTA 252 Query 259 RDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAA 318 R+ +A+RRD+AP R+LPD+AI++AA DPKS +L LPVFGG QRR A +W +AL A Sbjct 253 REELAERRDVAPGRVLPDTAIVNAATVDPKSNSELTRLPVFGGPRQRRQAGIWLSALQRA 312 Query 319 RESPDPPEIAEPANGP--PPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPD 376 RE PD A GP PP RW +R P AAAR+ R AL EV++ +P EN+++PD Sbjct 313 RELPDSELPARKTTGPGLPPVSRWEQRNPEAAARMQKVRPALKEVAEHHTLPVENILAPD 372 Query 377 LVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 +VR+LCW+ + P A++A+L AR WQ +L V LT AL Sbjct 373 VVRQLCWD----GLAEPVTTEAMDAHLTAAGARPWQRQLSVDALTEAL 416 >gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149] gi|237885340|gb|EEP74168.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149] Length=442 Score = 377 bits (967), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 227/433 (53%), Positives = 273/433 (64%), Gaps = 19/433 (4%) Query 2 CPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERA 61 PEP AG E T P PL P G P+ TV +A G GP A+DAERA Sbjct 27 APEPVDAG---PEPTADGPVPLTAPREGTPEPVTTVAGLAEVVARFAAGTGPVALDAERA 83 Query 62 SGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPC 121 SG+RYS RAYL+Q+RRA AGT LIDP+ PL L+ + ++ EW+LH+A QDLPC Sbjct 84 SGYRYSQRAYLVQLRRAGAGTALIDPL-----PLPDLSSLDSAIADAEWVLHAASQDLPC 138 Query 122 LAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLN 181 LAEVG+RP L+DTELA RLAGF+RV LAA+ E+LLG L K H AADWS RPLP +WL Sbjct 139 LAEVGLRPRRLFDTELAARLAGFERVGLAALTEQLLGFSLEKHHSAADWSSRPLPESWLT 198 Query 182 YAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIH 241 YAALDVELL +LR A+ LA QGK+ WAA+EF L +RPP R + WRRTSGIH Sbjct 199 YAALDVELLTDLRDALDAELARQGKSAWAAEEFAALVHSGARPP--RVRAEPWRRTSGIH 256 Query 242 KVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGG 301 +V R A VR LW ARD+IA RRD AP R+LPDSAI+ AA DP+ L+ LP FGG Sbjct 257 RVRGARAQARVRSLWYARDQIAARRDAAPGRVLPDSAIVAAAELDPRDEKTLLTLPGFGG 316 Query 302 RNQRRSAAVWWAALAAARESPDPPEIAEPA-NGPPPPGRWVRRKPAAAARLDAARAALTE 360 R+ RR A W AAL AR+ P+ PA GPPPP RW R P AA RL R + Sbjct 317 RSVRRLARTWLAALDDARQLPEDALPVTPAVEGPPPPHRWAERDPVAAGRLARCREVVIR 376 Query 361 VSQRVRVPTENLVSPDLVRRLCWE-WEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI 419 V+ +P ENL++PD +RRL W E++++ A V LR AR WQL L+VP Sbjct 377 VAGEHALPPENLIAPDSIRRLAWAPPEEVTE------ATVAETLRGFGAREWQLALLVPG 430 Query 420 LTAALTGAPDAGA 432 LT ALT +P GA Sbjct 431 LTPALT-SPSPGA 442 >gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1] Length=424 Score = 374 bits (961), Expect = 1e-101, Method: Compositional matrix adjust. Identities = 214/418 (52%), Positives = 271/418 (65%), Gaps = 16/418 (3%) Query 9 GAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSG 68 G A + S P PLL P GIP + +A G GP AVDAERASG+RY Sbjct 17 GGAPPDDLPSAPVPLLEPREGIPPVTADPDALAEVITAFAEGHGPVAVDAERASGYRYGQ 76 Query 69 RAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMR 128 RAYL+Q+RRA AGT LIDPV G P L+ + + ++ EW+LH+A QDLPCL ++GM Sbjct 77 RAYLVQLRRAGAGTALIDPV---GCP--DLSGLGDAIADAEWVLHAATQDLPCLRDIGML 131 Query 129 PPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVE 188 P L+DTELAGRLAGF RV L AMVE +LG L KGH A DWS RPLP WL+YAALDVE Sbjct 132 PGRLFDTELAGRLAGFARVGLGAMVENILGYALEKGHSAVDWSTRPLPDPWLHYAALDVE 191 Query 189 LLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRG 248 LL++LR A+ L QGK +WA QEF + + A R+D WRRTSG+HKV RR Sbjct 192 LLVDLRDALEEELTRQGKLNWAHQEFAAIAAAPP----APPRKDPWRRTSGMHKVRRRRQ 247 Query 249 LAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSA 308 +A VRELWTARD+IAQRRD++P ++L D+AI++AA+A P + L AL FG R RR Sbjct 248 MAVVRELWTARDKIAQRRDVSPGKVLGDAAIVEAALALPTTARALGALGGFGHRMGRRQL 307 Query 309 AVWWAALAAARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVR 366 W AA+ AR P+ P+ +P GPPPP W + P AAARL AAR A+T +++++ Sbjct 308 EQWQAAVDRARALPESELPQPGQPVAGPPPPRAWADKDPVAAARLSAARTAVTGLAEQLN 367 Query 367 VPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 +P ENL++PD VRRLC WE ++ + + +AAV L AR WQ+E PIL AL Sbjct 368 LPQENLIAPDTVRRLC--WEPPAEVTAESVAAV---LHGYGARPWQIEQTTPILLTAL 420 >gi|333023774|ref|ZP_08451838.1| putative ribonuclease [Streptomyces sp. Tu6071] gi|332743626|gb|EGJ74067.1| putative ribonuclease [Streptomyces sp. Tu6071] Length=431 Score = 374 bits (959), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 220/407 (55%), Positives = 271/407 (67%), Gaps = 16/407 (3%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PLL P GIP + +A A G GP AVDAERASG+RY RAYL+Q+RRA Sbjct 34 PVPLLEPREGIPPVIADPESLATAVAAFASGSGPVAVDAERASGYRYGQRAYLVQLRRAG 93 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGT LIDPV+ L+ + L+ EW LH+A QDLPCL E+GM P +L+DTELAG Sbjct 94 AGTALIDPVA-----CPDLSGLGAALANAEWDLHAATQDLPCLREIGMVPHSLFDTELAG 148 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF RV L AMVE +LG L KGH A DWS RPLP WL YAALDVELL++LR A+ + Sbjct 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 L QGK +WA +EF+ + S A R+D WRRTSG+H+V RR LA VRELWT R Sbjct 209 ELERQGKLEWALEEFDAIASAPP----PAPRKDPWRRTSGMHRVRRRRQLAVVRELWTLR 264 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIA+RRD++P ++LPD+AI++AA+A P +V L ALP FG R Q+R W AA+ AR Sbjct 265 DRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGALPAFGQRAQKRQLDQWQAAIDRAR 324 Query 320 ESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDL 377 E P+ P+ GPPPP W R P AAARL AARA + +++R+ +P ENL++PD Sbjct 325 ELPEGELPQPGASVAGPPPPRAWADRDPEAAARLSAARAGVNTLAERLHLPQENLITPDT 384 Query 378 VRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 VRR+CWE +SPDP A EA LR AR WQ+E V P+LT AL Sbjct 385 VRRVCWE----PPASPDPDAVAEA-LREHGARRWQIEHVTPVLTRAL 426 >gi|284990407|ref|YP_003408961.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160] gi|284063652|gb|ADB74590.1| 3'-5' exonuclease [Geodermatophilus obscurus DSM 43160] Length=418 Score = 372 bits (956), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 216/415 (53%), Positives = 263/415 (64%), Gaps = 16/415 (3%) Query 12 ESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAY 71 + E T PLL P G+P + T + AE L G GP AVDAERASG+RY RAY Sbjct 15 DDEPTAPPAVPLLAPRDGLPPVIETSTALVEYAEALAAGSGPVAVDAERASGYRYGQRAY 74 Query 72 LIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPA 131 L+Q+RR GT LIDP+ PL L+ V + EW+LH+A QDLP LAEVG+ P Sbjct 75 LVQLRRVGTGTGLIDPI-----PLPDLSVVQSAIVDAEWVLHAASQDLPSLAEVGLVPAR 129 Query 132 LYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLI 191 L+DTELA RLAG RV L A+VE LLG L KGH AADWS RPLP WL YAALDVE+L+ Sbjct 130 LFDTELAARLAGLPRVGLGAVVESLLGYRLEKGHSAADWSTRPLPEEWLVYAALDVEVLV 189 Query 192 ELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAA 251 +LR A++ VL EQGKT+WA QEF + + PP A R D WRRTSG+H + RR L Sbjct 190 DLRDALAAVLEEQGKTEWARQEFAAI--LAAGPP--APRADPWRRTSGVHGLRSRRQLGM 245 Query 252 VRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVW 311 +R LW ARD +A+RRDIAP R+LPD+A++ A ADP++ L+ LPVF GR R+ W Sbjct 246 LRSLWQARDELARRRDIAPGRVLPDAAMVSAVQADPRTEAALLELPVFRGRANRKLVGTW 305 Query 312 WAALAAARESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPT 369 + AL RE P+ P + P +GPPP RW R PAAA RL AARA L E++ +P Sbjct 306 FGALTRGRELPESELPLHSRPGDGPPPVNRWADRDPAAATRLQAARAGLAELAATHSLPV 365 Query 370 ENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 ENL+SPDLVRRL W + P V A LR G AR WQ+EL +LT AL Sbjct 366 ENLLSPDLVRRLMW-----TPPEPRDAETVAATLRAGGAREWQVELTRDLLTDAL 415 >gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4] gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4] Length=420 Score = 372 bits (956), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 221/416 (54%), Positives = 280/416 (68%), Gaps = 19/416 (4%) Query 14 EGTESEPTPLL--RPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAY 71 E TE TP+L PA G P + +A A L G G AVD ERASG+RY +AY Sbjct 14 ETTEDSGTPVLLREPAEGTPPVVADPDALAEACARLAAGTGAVAVDTERASGYRYWPKAY 73 Query 72 LIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPA 131 L+Q+RR +GTVLIDP++ D LAP+ +VL+ EW+LH+A QDLPCLAE+ +RP + Sbjct 74 LVQLRREGSGTVLIDPIALADD----LAPLRDVLNDTEWVLHAASQDLPCLAELNLRPRS 129 Query 132 LYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLI 191 L+DTELAGRLAG++RV L +VE LLG L KGH AADWSKRPLP WLNYAALDVELL Sbjct 130 LFDTELAGRLAGYERVALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLN 189 Query 192 ELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAA 251 ELR + L QGK +WA QEFE +R+ A R + WRRTSG+HK+ RGLAA Sbjct 190 ELREKLEAELTAQGKLEWARQEFEAVRTAPP----PAPRAEPWRRTSGVHKIRSPRGLAA 245 Query 252 VRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVW 311 VRE+W ARD +A++RD AP RILPDSAI++A +DPK+V++L ALPVF GR QR+ A W Sbjct 246 VREMWQARDELARKRDRAPSRILPDSAIVNAVTSDPKTVEELQALPVFSGRVQRKYTASW 305 Query 312 WAALAAARESP--DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPT 369 L AA+ P + P ++P++GPPP RW + P AAARL AARAAL +++ ++P Sbjct 306 LRHLQAAKALPASELPSPSQPSDGPPPVNRWADKDPDAAARLAAARAALAAIAEDRKLPV 365 Query 370 ENLVSPDLVRRLCWE-WEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 ENL+ PDLVRR CW D+S+ S V L+ G AR WQ+EL +L+ AL Sbjct 366 ENLLLPDLVRRTCWRPPADLSEDS------VAEALKAGGARPWQIELTAAVLSKAL 415 >gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827] gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827] Length=414 Score = 371 bits (952), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 220/418 (53%), Positives = 275/418 (66%), Gaps = 15/418 (3%) Query 13 SEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYL 72 ++ T ++P PL PA G+P + + AA+ L GP AVD ERASG+RYS RAYL Sbjct 9 TDPTGAQPVPLTEPADGVPPVVADSSALRRAADALAGAEGPVAVDTERASGYRYSQRAYL 68 Query 73 IQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPAL 132 +Q+RR AGTVL+DP++ GG L P+ E L EW+LH+A QDLPCLAE+G+ P AL Sbjct 69 VQLRREGAGTVLVDPIALGGR----LDPLVEALEGTEWVLHAASQDLPCLAELGLTPSAL 124 Query 133 YDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIE 192 +DTELAGRLAGF+RV L +VE LLG L KGHGAADWS+RPLP+ WLNYAALDVELL++ Sbjct 125 FDTELAGRLAGFERVALGTLVELLLGYRLEKGHGAADWSRRPLPADWLNYAALDVELLVQ 184 Query 193 LRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAV 252 LR + L +QGK +WA +EF+ R+ P R + WRRTSGIH++ R LAAV Sbjct 185 LRDVLEEELRQQGKLEWALEEFDAARTA----PLPKPRAEPWRRTSGIHRIRSTRQLAAV 240 Query 253 RELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWW 312 R LW RD +A+ RD+AP R+LPDSA++DAA +P L+ALPVF GR QRR A W Sbjct 241 RSLWETRDALARERDLAPGRVLPDSALVDAATRNPADEAALLALPVFRGRAQRRMAGTWM 300 Query 313 AAL--AAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTE 370 AL AAA + PE A+ +GPPP RW + PAAAARL AAR AL EV++ +P E Sbjct 301 GALRKAAALPRAELPETAQHHDGPPPANRWADKDPAAAARLAAARTALAEVAEANTLPVE 360 Query 371 NLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAP 428 NL+ PDLVRR CW+ S + V A LR G AR WQ+ L L+ AL P Sbjct 361 NLLLPDLVRRTCWQ-----PPSDTSLDGVTAALREGGAREWQIGLTARALSEALAATP 413 >gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32] gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32] gi|340525969|gb|AEK41174.1| ribonuclease D [Amycolatopsis mediterranei S699] Length=407 Score = 370 bits (950), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 225/407 (56%), Positives = 278/407 (69%), Gaps = 15/407 (3%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P L PA G P + E+A A L G G AVD ERASG+RY +AYL+Q+RR Sbjct 9 PVLLREPAEGTPPVITDAAELAEACAKLAAGTGAVAVDTERASGYRYFPKAYLVQLRREG 68 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGTVLIDP++ G+ LAP+ EVL++ EW+LH+A QDLPCLAE+G+ P AL+DTELAG Sbjct 69 AGTVLIDPIALDGE----LAPLREVLNSLEWVLHAASQDLPCLAELGLHPAALFDTELAG 124 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAG++RV L +VE LLG L KGH AADWSKRPLP WLNYAALDVELLI+LR + Sbjct 125 RLAGYERVALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLIQLREKLEA 184 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 L QGK +WA QEFE F PP R + WRRTSG+HK+ RGLAAVRELW AR Sbjct 185 ELGAQGKLEWARQEFE----FVRTAPPPPPRAEPWRRTSGVHKIRSPRGLAAVRELWQAR 240 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 D +A++RD AP RILPDSAI++A ADPK+V++L ALPVF GR QR+ A W L AA+ Sbjct 241 DELARKRDRAPSRILPDSAIVNAVTADPKTVEELQALPVFSGRVQRKYTASWLRHLQAAK 300 Query 320 ESP--DPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDL 377 P + P ++P +GPPP RW + P AAARL AARAALT +++ R+P ENL+ PDL Sbjct 301 ALPASELPSPSQPTDGPPPVNRWADKDPDAAARLSAARAALTAIAEDRRLPVENLLLPDL 360 Query 378 VRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 VRR C W +++ D +A V LR AR WQ+EL +L+ AL Sbjct 361 VRRTC--WRPPAETDEDSVAEV---LRASGARPWQVELTAAVLSKAL 402 >gi|302522528|ref|ZP_07274870.1| ribonuclease D [Streptomyces sp. SPB78] gi|302431423|gb|EFL03239.1| ribonuclease D [Streptomyces sp. SPB78] Length=431 Score = 370 bits (949), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 221/407 (55%), Positives = 272/407 (67%), Gaps = 16/407 (3%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PLL P GIP + +AAA G GP AVDAERASG+RY RAYL+Q+RRA Sbjct 34 PVPLLEPREGIPPVIADPESLAAAVAAFASGSGPVAVDAERASGYRYGQRAYLVQLRRAG 93 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGT LIDPV+ L+ + L+ EW LH+A QDLPCL E+GM P +L+DTELAG Sbjct 94 AGTALIDPVA-----CPDLSGLGAALANAEWDLHAATQDLPCLREIGMVPHSLFDTELAG 148 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF RV L AMVE +LG L KGH A DWS RPLP WL YAALDVELL++LR A+ + Sbjct 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 L QGK +WA +EF+ + S A R+D WRRTSG+H+V RR LA VRELWT R Sbjct 209 ELERQGKLEWALEEFDAIASAPP----PAPRKDPWRRTSGMHRVRRRRQLAVVRELWTLR 264 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIA+RRD++P ++LPD+AI++AA+A P +V L ALP FG R Q+R W AA+ AR Sbjct 265 DRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGALPAFGQRAQKRQLDQWQAAIDRAR 324 Query 320 ESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDL 377 E P+ P+ GPPPP W R P AAARL AARA + +++R+ +P ENL++PD Sbjct 325 ELPEGELPQPGASVAGPPPPRAWADRDPEAAARLSAARAGVNTLAERLHLPQENLITPDT 384 Query 378 VRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 VRR+CWE +SPDP A EA LR AR WQ+E V P+LT AL Sbjct 385 VRRVCWE----PPASPDPDAVAEA-LRGYGARHWQIEHVTPVLTRAL 426 >gi|318061059|ref|ZP_07979780.1| ribonuclease D [Streptomyces sp. SA3_actG] gi|318079172|ref|ZP_07986504.1| ribonuclease D [Streptomyces sp. SA3_actF] Length=431 Score = 369 bits (947), Expect = 5e-100, Method: Compositional matrix adjust. Identities = 221/407 (55%), Positives = 272/407 (67%), Gaps = 16/407 (3%) Query 20 PTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYLIQIRRAE 79 P PLL P GIP + +AAA G GP AVDAERASG+RY RAYL+Q+RRA Sbjct 34 PVPLLEPREGIPPVIADPESLAAAVAAFASGSGPVAVDAERASGYRYGQRAYLVQLRRAG 93 Query 80 AGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPALYDTELAG 139 AGT LIDPV+ L+ + L+ EW LH+A QDLPCL E+GM P +L+DTELAG Sbjct 94 AGTALIDPVA-----CPDLSGLGAALANAEWDLHAATQDLPCLREIGMVPHSLFDTELAG 148 Query 140 RLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIELRAAISR 199 RLAGF RV L AMVE +LG L KGH A DWS RPLP WL YAALDVELL++LR A+ + Sbjct 149 RLAGFPRVGLGAMVENVLGYTLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEK 208 Query 200 VLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAVRELWTAR 259 L QGK +WA +EF+ + S A R+D WRRTSG+H+V RR LA VRELWT R Sbjct 209 ELERQGKLEWALEEFDAIASAPP----PAPRKDPWRRTSGMHRVRRRRQLAVVRELWTLR 264 Query 260 DRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWWAALAAAR 319 DRIA+RRD++P ++LPD+AI++AA+A P +V L ALP FG R Q+R W AA+ AR Sbjct 265 DRIARRRDVSPGKVLPDAAIVEAALAVPVNVHALGALPAFGQRAQKRQLDQWQAAIDRAR 324 Query 320 ESPDP--PEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTENLVSPDL 377 E P+ P+ GPPPP W R P AAARL AARA + +++R+ +P ENL++PD Sbjct 325 ELPEGELPQPGASVAGPPPPRAWADRDPEAAARLSAARAGVNTLAERLHLPQENLITPDT 384 Query 378 VRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAAL 424 VRR+CWE +SPDP A EA LR AR WQ+E V P+LT AL Sbjct 385 VRRVCWE----PPASPDPDAVAEA-LRGYGARRWQIEHVTPVLTRAL 426 >gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672] Length=432 Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 218/422 (52%), Positives = 267/422 (64%), Gaps = 17/422 (4%) Query 13 SEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGFRYSGRAYL 72 S TE+ P PLL P GIP + +A G GP AVDAERASG+RY RAYL Sbjct 26 SSATEA-PIPLLEPHEGIPPVIADEAALAEVIAAFAAGTGPVAVDAERASGYRYGQRAYL 84 Query 73 IQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAEVGMRPPAL 132 +Q+RR AGT LIDPV+ L+ + E LS EW+LH+A QDLPCL E+GM P L Sbjct 85 VQLRRQGAGTALIDPVA-----CPDLSALGEALSGVEWVLHAATQDLPCLREIGMLPTRL 139 Query 133 YDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAALDVELLIE 192 +DTELAGRLAGF RV L AMVE +LG L KGH A DWS RPLP WL YAALDVELL++ Sbjct 140 FDTELAGRLAGFPRVGLGAMVENVLGYVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVD 199 Query 193 LRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAAV 252 LR A+ + L QGK +WA QEF+ + S PP R+D WRRTSG+HKV RR +A V Sbjct 200 LRNALEKELDRQGKLEWARQEFDAIASA----PPPEPRKDPWRRTSGMHKVRRRRQMAVV 255 Query 253 RELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQRRSAAVWW 312 RELW RDRIA+RRD++P ++LPD+AI++AA+A P L AL FG R RR W Sbjct 256 RELWQTRDRIARRRDLSPGKVLPDAAIVEAALALPADARALAALNGFGQRAGRRQLEQWQ 315 Query 313 AAL--AAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVSQRVRVPTE 370 AA+ A A P+ +P GPPPP W + P AAARL AARA + +++R+ +P E Sbjct 316 AAVDRAKALSESQLPQPGQPVTGPPPPRAWADKDPVAAARLSAARAGVAALAERLNMPPE 375 Query 371 NLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTAALTGAPDA 430 NL++PD VRR+CWE P +V A L ARAWQ+E V P+L AL D Sbjct 376 NLIAPDTVRRVCWE-----PPQPADARSVAAVLTEYGARAWQVEQVTPVLVTALASGADQ 430 Query 431 GA 432 GA Sbjct 431 GA 432 >gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029] gi|315502675|ref|YP_004081562.1| 3'-5' exonuclease [Micromonospora sp. L5] gi|302568976|gb|ADL45178.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029] gi|315409294|gb|ADU07411.1| 3'-5' exonuclease [Micromonospora sp. L5] Length=439 Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 216/425 (51%), Positives = 264/425 (63%), Gaps = 19/425 (4%) Query 2 CPEPSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERA 61 PEP+ AG SE PL P G P T E+ G GP A+DAERA Sbjct 27 LPEPADAG---SETDTGAAVPLTAPRDGTPAPVATPAELDEVVARFAAGTGPVALDAERA 83 Query 62 SGFRYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPC 121 SG+RYS RAYL+Q+RR AGT LIDP+ PL L+ + V++ EW+LH+A QDL C Sbjct 84 SGYRYSQRAYLVQLRRGGAGTALIDPL-----PLPDLSALDAVIAETEWVLHAASQDLAC 138 Query 122 LAEVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLN 181 LAEVG+RP L+DTELA RLAGF+RV LAA+ E+LLG L K H AADWS RPLP +WL Sbjct 139 LAEVGLRPRRLFDTELAARLAGFERVGLAALTEQLLGFSLEKHHSAADWSSRPLPESWLT 198 Query 182 YAALDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIH 241 YAALDVELL++LR ++ L QGK+ WAA+EF+ L + P R + WRRTSGIH Sbjct 199 YAALDVELLVDLRDSLDEELQRQGKSGWAAEEFDALVRNGASP---RVRAEPWRRTSGIH 255 Query 242 KVHDRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGG 301 +V R A VR LW ARD+IA RRD AP R+LPDSAI+ AA DPK L+ LP FGG Sbjct 256 RVRGARAQARVRSLWYARDQIASRRDAAPGRVLPDSAIVAAAELDPKDEKTLLTLPGFGG 315 Query 302 RNQRRSAAVWWAALAAARESPDPPEIAEPA-NGPPPPGRWVRRKPAAAARLDAARAALTE 360 R+ RR A W AAL AR+ PD PA GPPPP RW R P AA RL AR + Sbjct 316 RSVRRLARTWLAALDDARQLPDDALPVSPAVEGPPPPHRWAERDPVAAGRLARAREVVVG 375 Query 361 VSQRVRVPTENLVSPDLVRRLCWE-WEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPI 419 + R+P ENL++PD +RRL W+ +I+ + V LR AR WQ+ L++P Sbjct 376 TAGAHRLPAENLIAPDSIRRLAWQPPAEITDET------VAETLRGFGAREWQIGLLLPA 429 Query 420 LTAAL 424 LT AL Sbjct 430 LTEAL 434 >gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000] gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000] Length=430 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 220/429 (52%), Positives = 275/429 (65%), Gaps = 22/429 (5%) Query 5 PSHAGAAESEGTESEPTPLLRPAGGIPDLCVTVGEIAAAAELLDRGRGPFAVDAERASGF 64 P G++ +E PTPLL P GIP + +A A G GP AVDAERASG+ Sbjct 21 PDDGGSSVTEA----PTPLLEPREGIPPVIADEAALAEAVAAFAAGSGPVAVDAERASGY 76 Query 65 RYSGRAYLIQIRRAEAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHSADQDLPCLAE 124 RY RAYL+Q+RR AGT LIDPV+ L+ + E LS EW+LH+A QDLPCL E Sbjct 77 RYGQRAYLVQLRREGAGTALIDPVA-----CPDLSSLGEALSGVEWVLHAATQDLPCLRE 131 Query 125 VGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWSKRPLPSAWLNYAA 184 +GM P L+DTELAGRLAGF RV L AMVE +LG L KGH A DWS RPLP WL YAA Sbjct 132 IGMVPSRLFDTELAGRLAGFPRVGLGAMVENVLGFVLEKGHSAVDWSTRPLPEPWLRYAA 191 Query 185 LDVELLIELRAAISRVLAEQGKTDWAAQEFEHLRSFESRPPPAAARQDRWRRTSGIHKVH 244 LDVELL++LR A+ + L QGK DWA QEF+ + S PP R+D WRRTSG+HKV Sbjct 192 LDVELLVDLRDALEKELDRQGKLDWARQEFDAIASA----PPPEPRKDPWRRTSGMHKVR 247 Query 245 DRRGLAAVRELWTARDRIAQRRDIAPRRILPDSAIIDAAIADPKSVDDLVALPVFGGRNQ 304 RR +A VRELW RDRIA+RRD++P ++L D+AI++AA+A P ++ + AL FG R Sbjct 248 RRRQMAVVRELWETRDRIARRRDVSPGKVLSDAAIVEAALALPANLHAMAALNGFGQRVG 307 Query 305 RRSAAVWWAAL--AAARESPDPPEIAEPANGPPPPGRWVRRKPAAAARLDAARAALTEVS 362 RR W AA+ A A P+ +P GPPPP W + P AAARL AARA + E++ Sbjct 308 RRQLEQWQAAVDRAKALSEAQLPQPGQPVTGPPPPRAWADKDPVAAARLSAARAGVAELA 367 Query 363 QRVRVPTENLVSPDLVRRLCWEWEDISQSSPDPIAAVEAYLRTGQARAWQLELVVPILTA 422 +R+ +P ENL++PD VRR+CWE + S V A L ARAWQ++ V P+L A Sbjct 368 ERLNMPPENLITPDTVRRVCWEPPGPDERS------VAAALTAHGARAWQVDQVTPVLVA 421 Query 423 AL-TGAPDA 430 AL T +P A Sbjct 422 ALATSSPPA 430 Lambda K H 0.318 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 897400889630 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40