BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2686c
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609823|ref|NP_217202.1| antibiotic ABC transporter transmem... 488 4e-136
gi|340627687|ref|YP_004746139.1| putative antibiotic-transport i... 482 2e-134
gi|308373475|ref|ZP_07432474.2| antibiotic-transport membrane le... 467 7e-130
gi|289762857|ref|ZP_06522235.1| antibiotic-transport integral me... 451 5e-125
gi|183982042|ref|YP_001850333.1| antibiotic-transport integral m... 386 1e-105
gi|296171907|ref|ZP_06852971.1| antibiotic ABC superfamily ATP b... 377 9e-103
gi|118470648|ref|YP_885886.1| antibiotic ABC transporter transme... 363 1e-98
gi|317507610|ref|ZP_07965323.1| antibiotic ABC transporter perme... 362 3e-98
gi|108799171|ref|YP_639368.1| putative antibiotic-transport inte... 356 2e-96
gi|240169712|ref|ZP_04748371.1| antibiotic-transport integral me... 352 3e-95
gi|169628948|ref|YP_001702597.1| antibiotic ABC transporter memb... 339 2e-91
gi|120401789|ref|YP_951618.1| putative antibiotic-transport inte... 302 3e-80
gi|291302139|ref|YP_003513417.1| hypothetical protein Snas_4681 ... 182 3e-44
gi|148657929|ref|YP_001278134.1| hypothetical protein RoseRS_383... 133 2e-29
gi|147920488|ref|YP_685719.1| hypothetical protein RCIX1071 [unc... 124 1e-26
gi|282164305|ref|YP_003356690.1| putative ABC transporter [Metha... 124 2e-26
gi|156740973|ref|YP_001431102.1| hypothetical protein Rcas_0972 ... 119 3e-25
gi|163848261|ref|YP_001636305.1| hypothetical protein Caur_2711 ... 108 9e-22
gi|225174795|ref|ZP_03728793.1| ABC-type transport system, perme... 89.7 4e-16
gi|297560640|ref|YP_003679614.1| hypothetical protein Ndas_1679 ... 76.3 4e-12
gi|335431148|ref|ZP_08558031.1| ABC transporter permease [Halopl... 76.3 4e-12
gi|225181850|ref|ZP_03735286.1| conserved hypothetical protein [... 73.9 2e-11
gi|150389289|ref|YP_001319338.1| hypothetical protein Amet_1483 ... 68.2 1e-09
gi|266623836|ref|ZP_06116771.1| conserved hypothetical protein [... 65.9 6e-09
gi|162447632|ref|YP_001620764.1| ABC transporter permease [Achol... 65.9 6e-09
gi|255306174|ref|ZP_05350346.1| putative ABC transporter, permea... 65.1 9e-09
gi|225018216|ref|ZP_03707408.1| hypothetical protein CLOSTMETH_0... 64.7 1e-08
gi|315647137|ref|ZP_07900250.1| hypothetical protein PVOR_17389 ... 64.3 1e-08
gi|344327780|gb|EGW39193.1| putative membrane protein [Desulfosp... 62.4 6e-08
gi|298388109|ref|ZP_06997654.1| conserved hypothetical protein [... 61.6 1e-07
gi|253571783|ref|ZP_04849189.1| conserved hypothetical protein [... 61.6 1e-07
gi|341581243|ref|YP_004761735.1| hypothetical protein GQS_00775 ... 59.7 4e-07
gi|322367870|ref|ZP_08042440.1| putative ABC transporter [Halada... 59.3 5e-07
gi|254977268|ref|ZP_05273740.1| putative ABC transporter, permea... 59.3 6e-07
gi|89893660|ref|YP_517147.1| hypothetical protein DSY0914 [Desul... 56.6 3e-06
gi|345022748|ref|ZP_08786361.1| putative ABC transporter [Ornith... 56.2 4e-06
gi|309776796|ref|ZP_07671770.1| conserved hypothetical protein [... 56.2 5e-06
gi|254975391|ref|ZP_05271863.1| putative ABC transporter, permea... 56.2 5e-06
gi|332298444|ref|YP_004440366.1| hypothetical protein Trebr_1815... 55.8 6e-06
gi|219668041|ref|YP_002458476.1| hypothetical protein Dhaf_2003 ... 55.5 7e-06
gi|18976951|ref|NP_578308.1| hypothetical protein PF0579 [Pyroco... 55.5 7e-06
gi|319645533|ref|ZP_07999765.1| DacC protein [Bacillus sp. BT1B_... 55.5 7e-06
gi|240102888|ref|YP_002959197.1| hypothetical protein TGAM_0831 ... 54.7 1e-05
gi|52785884|ref|YP_091713.1| hypothetical protein BLi02133 [Baci... 54.7 1e-05
gi|325970506|ref|YP_004246697.1| hypothetical protein SpiBuddy_0... 54.3 2e-05
gi|57640627|ref|YP_183105.1| permease [Thermococcus kodakarensis... 53.1 4e-05
gi|242398582|ref|YP_002994006.1| Predicted permease [Thermococcu... 52.4 6e-05
gi|255655774|ref|ZP_05401183.1| putative ABC transporter, permea... 51.2 1e-04
gi|212223979|ref|YP_002307215.1| permease [Thermococcus onnurine... 48.9 7e-04
gi|310829073|ref|YP_003961430.1| hypothetical protein ELI_3508 [... 48.1 0.001
>gi|15609823|ref|NP_217202.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
tuberculosis H37Rv]
gi|15842224|ref|NP_337261.1| hypothetical protein MT2760 [Mycobacterium tuberculosis CDC1551]
gi|31793858|ref|NP_856351.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
bovis AF2122/97]
71 more sequence titles
Length=252
Score = 488 bits (1256), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 251/252 (99%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 VRAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG 60
+RAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG
Sbjct 1 MRAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG 60
Query 61 FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT 120
FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT
Sbjct 61 FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT 120
Query 121 VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR 180
VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR
Sbjct 121 VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR 180
Query 181 ALGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV 240
ALGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV
Sbjct 181 ALGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV 240
Query 241 WVLFRRFRAKHA 252
WVLFRRFRAKHA
Sbjct 241 WVLFRRFRAKHA 252
>gi|340627687|ref|YP_004746139.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
canettii CIPT 140010059]
gi|340005877|emb|CCC45043.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
canettii CIPT 140010059]
Length=252
Score = 482 bits (1240), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 246/252 (98%), Positives = 250/252 (99%), Gaps = 0/252 (0%)
Query 1 VRAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG 60
+RAISSLAGPRALAAFGRNDIRGTYRDPLLVMLV+APVIWTTGVA+LTPLFTEMLARRYG
Sbjct 1 MRAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVVAPVIWTTGVAVLTPLFTEMLARRYG 60
Query 61 FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT 120
FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLD+VDAGTM ALRVTPVPLSVFFGYRAAT
Sbjct 61 FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDEVDAGTMAALRVTPVPLSVFFGYRAAT 120
Query 121 VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR 180
VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR
Sbjct 121 VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR 180
Query 181 ALGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV 240
ALGMLIAGLPCLPWFISSNWNL FGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV
Sbjct 181 ALGMLIAGLPCLPWFISSNWNLVFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV 240
Query 241 WVLFRRFRAKHA 252
WVLFRRFRAKHA
Sbjct 241 WVLFRRFRAKHA 252
>gi|308373475|ref|ZP_07432474.2| antibiotic-transport membrane leucine and alanine and valine
rich protein ABC transporter [Mycobacterium tuberculosis SUMu005]
gi|308375510|ref|ZP_07444180.2| antibiotic-transport membrane leucine and alanine and valine
rich protein ABC transporter [Mycobacterium tuberculosis SUMu007]
gi|308405941|ref|ZP_07494494.2| antibiotic-transport membrane leucine and alanine and valine
rich protein ABC transporter [Mycobacterium tuberculosis SUMu012]
gi|308337507|gb|EFP26358.1| antibiotic-transport membrane leucine and alanine and valine
rich protein ABC transporter [Mycobacterium tuberculosis SUMu005]
gi|308346107|gb|EFP34958.1| antibiotic-transport membrane leucine and alanine and valine
rich protein ABC transporter [Mycobacterium tuberculosis SUMu007]
gi|308365028|gb|EFP53879.1| antibiotic-transport membrane leucine and alanine and valine
rich protein ABC transporter [Mycobacterium tuberculosis SUMu012]
gi|323718681|gb|EGB27843.1| hypothetical protein TMMG_02694 [Mycobacterium tuberculosis CDC1551A]
Length=240
Score = 467 bits (1202), Expect = 7e-130, Method: Compositional matrix adjust.
Identities = 239/240 (99%), Positives = 240/240 (100%), Gaps = 0/240 (0%)
Query 13 LAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILT 72
+AAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILT
Sbjct 1 MAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILT 60
Query 73 AFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVAT 132
AFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVAT
Sbjct 61 AFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVAT 120
Query 133 MSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCL 192
MSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCL
Sbjct 121 MSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCL 180
Query 193 PWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAKHA 252
PWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAKHA
Sbjct 181 PWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAKHA 240
>gi|289762857|ref|ZP_06522235.1| antibiotic-transport integral membrane leucine and alanine and
valine rich protein ABC transporter [Mycobacterium tuberculosis
GM 1503]
gi|289710363|gb|EFD74379.1| antibiotic-transport integral membrane leucine and alanine and
valine rich protein ABC transporter [Mycobacterium tuberculosis
GM 1503]
Length=244
Score = 451 bits (1160), Expect = 5e-125, Method: Compositional matrix adjust.
Identities = 237/245 (97%), Positives = 239/245 (98%), Gaps = 1/245 (0%)
Query 1 VRAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG 60
+RAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG
Sbjct 1 MRAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYG 60
Query 61 FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT 120
FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT
Sbjct 61 FDLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAAT 120
Query 121 VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR 180
VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR
Sbjct 121 VMVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVR 180
Query 181 ALGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV 240
ALGMLIAGLPCLPWFISSNWNLAFGVLPPYW + F SDHGTWWPYLVGGAVYNLAIV
Sbjct 181 ALGMLIAGLPCLPWFISSNWNLAFGVLPPYWLPRHFG-RSDHGTWWPYLVGGAVYNLAIV 239
Query 241 WVLFR 245
WVLFR
Sbjct 240 WVLFR 244
>gi|183982042|ref|YP_001850333.1| antibiotic-transport integral membrane leucine, alanine and valine
rich protein ABC transporter [Mycobacterium marinum M]
gi|183175368|gb|ACC40478.1| antibiotic-transport integral membrane leucine, alanine and valine
rich protein ABC transporter [Mycobacterium marinum M]
Length=254
Score = 386 bits (992), Expect = 1e-105, Method: Compositional matrix adjust.
Identities = 198/244 (82%), Positives = 211/244 (87%), Gaps = 0/244 (0%)
Query 8 AGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYY 67
A RAL AFGRNDIRGTYR+PLLVM+V+AP IWT+ VALLTP T MLA R GFDL YY
Sbjct 7 ASIRALIAFGRNDIRGTYREPLLVMIVVAPAIWTSAVALLTPRVTTMLADRNGFDLRPYY 66
Query 68 PLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTI 127
PLILTAFLLLTSII+ G LAAFLVLD+VDAGT+ ALRVTPVPLS FF YRAATVMVVTTI
Sbjct 67 PLILTAFLLLTSIIIVGGLAAFLVLDEVDAGTLAALRVTPVPLSTFFVYRAATVMVVTTI 126
Query 128 YVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIA 187
YVVAT+S SGILE L+ SLIPIGL+AGLSAVVTLLLILAVANNKIQGLA VRALGMLIA
Sbjct 127 YVVATLSLSGILELRLLPSLIPIGLLAGLSAVVTLLLILAVANNKIQGLAAVRALGMLIA 186
Query 188 GLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRF 247
GLPCLPWFI SNWN F VLPPYW AKAFW+ASDH TWWPYLV G+ YNLA+ W LFRRF
Sbjct 187 GLPCLPWFIHSNWNFVFAVLPPYWPAKAFWLASDHATWWPYLVAGSAYNLALAWALFRRF 246
Query 248 RAKH 251
AKH
Sbjct 247 HAKH 250
>gi|296171907|ref|ZP_06852971.1| antibiotic ABC superfamily ATP binding cassette transporter,
membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295893906|gb|EFG73677.1| antibiotic ABC superfamily ATP binding cassette transporter,
membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=245
Score = 377 bits (968), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 190/241 (79%), Positives = 212/241 (88%), Gaps = 0/241 (0%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
RAL A GRNDIRGTYRDPLLVM+V+APVIWT+ VA+LTP T MLA R GFDLVGYYPLI
Sbjct 5 RALVALGRNDIRGTYRDPLLVMVVVAPVIWTSAVAVLTPRVTAMLAHRNGFDLVGYYPLI 64
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
LTAFLLLTSII+ GALAAFLVLD+VDAGT+TALRVTPV +S FF YRAATV+ VT +YV+
Sbjct 65 LTAFLLLTSIIIVGALAAFLVLDEVDAGTLTALRVTPVSMSTFFAYRAATVLGVTAVYVI 124
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
ATMS SG+L GL+ LIPIGL+AGLSAVVTLLLI+ +A NKIQGLA+VRALGMLIAGLP
Sbjct 125 ATMSFSGLLRSGLLPDLIPIGLLAGLSAVVTLLLIVDMAGNKIQGLAVVRALGMLIAGLP 184
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
C+PWFI SNWN+AFGVLPPYWAAKAFWVA +G WWPYL+GG VYNLAI W LF RFRAK
Sbjct 185 CVPWFIHSNWNVAFGVLPPYWAAKAFWVADGNGAWWPYLIGGVVYNLAIAWALFSRFRAK 244
Query 251 H 251
+
Sbjct 245 Y 245
>gi|118470648|ref|YP_885886.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
smegmatis str. MC2 155]
gi|118171935|gb|ABK72831.1| probable antibiotic-transport integral membrane leucine and alanine
and valine rich protein abc transporter [Mycobacterium
smegmatis str. MC2 155]
Length=252
Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/241 (79%), Positives = 213/241 (89%), Gaps = 0/241 (0%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
RA+AAFGR DIRGTYRDPLL+MLV+APVIWT+ VA+LTP FTE L RY FDLV YYPL+
Sbjct 11 RAVAAFGRKDIRGTYRDPLLIMLVVAPVIWTSLVAVLTPRFTETLGARYDFDLVPYYPLV 70
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
LT FLLLTSIIVAG L AFLVLD+VDAGTMTALRVTPVP++ FF YRA TVM+VTT+YVV
Sbjct 71 LTGFLLLTSIIVAGGLGAFLVLDEVDAGTMTALRVTPVPIATFFAYRAVTVMLVTTVYVV 130
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
AT+ SGIL PGLV L+PIG++AGLSAVVTLL ++A+A +KIQG+AMVRALGMLIAGLP
Sbjct 131 ATLPLSGILAPGLVGPLVPIGMLAGLSAVVTLLAVVALAGDKIQGIAMVRALGMLIAGLP 190
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
C+PWFI S WNLAFGVLPPYWAAKAFWVAS HGTWWPYLV GAVYN+ + W LFRRF+A+
Sbjct 191 CVPWFIDSAWNLAFGVLPPYWAAKAFWVASAHGTWWPYLVVGAVYNVVVAWPLFRRFQAR 250
Query 251 H 251
H
Sbjct 251 H 251
>gi|317507610|ref|ZP_07965323.1| antibiotic ABC transporter permease [Segniliparus rugosus ATCC
BAA-974]
gi|316254087|gb|EFV13444.1| antibiotic ABC transporter permease [Segniliparus rugosus ATCC
BAA-974]
Length=245
Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 185/241 (77%), Positives = 215/241 (90%), Gaps = 0/241 (0%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ LAA RND+RGTYRDPLLVMLV+AP++WT+GVAL TPLFT ML +++GFDLV YYPL+
Sbjct 5 KVLAALARNDLRGTYRDPLLVMLVVAPLLWTSGVALFTPLFTRMLDQKHGFDLVPYYPLV 64
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
LTAFLLLTS+IV G LAAFLVLD+VDAGT+TALRVTPVPL+VFFGYRAATV+V+T +YVV
Sbjct 65 LTAFLLLTSVIVPGGLAAFLVLDEVDAGTLTALRVTPVPLAVFFGYRAATVVVITAVYVV 124
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
ATMS SGILEPGL+ LIPIG++AGLSAVVTLLLI+ ANNKIQGLAM+RALGMLIAGLP
Sbjct 125 ATMSLSGILEPGLILPLIPIGVLAGLSAVVTLLLIITTANNKIQGLAMLRALGMLIAGLP 184
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
CLPWF+ S WNLAFG+LPPYW AKA+W AS HG WWPYL+ GA+YN+A+ W+L RRF AK
Sbjct 185 CLPWFVHSGWNLAFGILPPYWEAKAYWTASAHGVWWPYLIVGALYNIAVAWLLLRRFLAK 244
Query 251 H 251
Sbjct 245 R 245
>gi|108799171|ref|YP_639368.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
sp. MCS]
gi|119868286|ref|YP_938238.1| putative antibiotic-transport integral membrane leucine [Mycobacterium
sp. KMS]
gi|126434779|ref|YP_001070470.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
sp. JLS]
gi|108769590|gb|ABG08312.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
sp. MCS]
gi|119694375|gb|ABL91448.1| putative antibiotic-transport integral membrane leucine [Mycobacterium
sp. KMS]
gi|126234579|gb|ABN97979.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
sp. JLS]
Length=248
Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 191/241 (80%), Positives = 211/241 (88%), Gaps = 0/241 (0%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
RA AFGRNDIRG YRDPLLVM+V APVIWT+ VALLTP TEMLA + GFDLV YYP+I
Sbjct 7 RAWRAFGRNDIRGAYRDPLLVMIVFAPVIWTSAVALLTPRVTEMLAEKQGFDLVPYYPVI 66
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
LT FLLLTSII+AGALAAFLVLD+VDAGT+TALRVTPV LSVFF YRA TV+VVTT+YVV
Sbjct 67 LTGFLLLTSIIIAGALAAFLVLDEVDAGTLTALRVTPVKLSVFFAYRAVTVVVVTTVYVV 126
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
T+S SGIL+PG+ +LIPIGL++GLSAVVTLLLI+A+A NKIQGLA VR LGMLIAGLP
Sbjct 127 TTLSLSGILQPGMTGALIPIGLLSGLSAVVTLLLIVAMAGNKIQGLAAVRGLGMLIAGLP 186
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
CLPWFI S WNLAFGVLPPYWAAKAFWVA DHGTWWPYL+ G VYN A+ W LFRRF AK
Sbjct 187 CLPWFIDSAWNLAFGVLPPYWAAKAFWVAGDHGTWWPYLLAGVVYNGAVAWPLFRRFLAK 246
Query 251 H 251
+
Sbjct 247 N 247
>gi|240169712|ref|ZP_04748371.1| antibiotic-transport integral membrane leucine, alanine and valine
rich protein ABC transporter [Mycobacterium kansasii ATCC
12478]
Length=242
Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 188/236 (80%), Positives = 206/236 (88%), Gaps = 0/236 (0%)
Query 15 AFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAF 74
AFGRND+RGTYRDPLLVM+V+APVIWT+ VALLTP T MLA R GFDLV YYPLILT F
Sbjct 2 AFGRNDLRGTYRDPLLVMIVVAPVIWTSAVALLTPRVTAMLANRNGFDLVPYYPLILTGF 61
Query 75 LLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMS 134
LLLTSII+ G LAAFLVLD++DAGT+TALRVTPVPL F YRAATVMV+TT YV+ T+S
Sbjct 62 LLLTSIIIVGGLAAFLVLDELDAGTLTALRVTPVPLWAFLAYRAATVMVLTTGYVIVTLS 121
Query 135 CSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPW 194
SGILEPGLV SLIPIGL+AGLSAVVTLLLIL +A+NKIQGLA VR LGMLIAGLPCLPW
Sbjct 122 FSGILEPGLVPSLIPIGLLAGLSAVVTLLLILTLAHNKIQGLAAVRGLGMLIAGLPCLPW 181
Query 195 FISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
F+ S WN+AFGVLPPYWAAKAFWVA DHGTWWPYLV GA YN+ I W+LF RF AK
Sbjct 182 FVHSYWNIAFGVLPPYWAAKAFWVACDHGTWWPYLVAGAGYNVVIGWMLFWRFYAK 237
>gi|169628948|ref|YP_001702597.1| antibiotic ABC transporter membrane protein [Mycobacterium abscessus
ATCC 19977]
gi|169240915|emb|CAM61943.1| Probable ABC transporter antibiotic-transport integral membrane
protein [Mycobacterium abscessus]
Length=246
Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/241 (76%), Positives = 213/241 (89%), Gaps = 0/241 (0%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
R AAFGRNDIRGTYRDPLL+M+V+AP+IWTTGVA+LTP T++L+ GFDLV YYPL+
Sbjct 5 RVWAAFGRNDIRGTYRDPLLIMVVLAPIIWTTGVAVLTPQATDLLSATRGFDLVPYYPLV 64
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
LTAFLLLTSII+ GALAAFLVLDDVDAGT+TALRVTPVP+S +F YRAATV+V+TT+YVV
Sbjct 65 LTAFLLLTSIIIPGALAAFLVLDDVDAGTLTALRVTPVPMSGYFLYRAATVVVITTVYVV 124
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
AT+S SGILEPG++ +LIPIG+++GLSAVVTLLL++A ANNKIQGLA VRALGMLIAGLP
Sbjct 125 ATLSLSGILEPGVLPALIPIGMLSGLSAVVTLLLVIAFANNKIQGLAAVRALGMLIAGLP 184
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
CLPWFI SNW AFGVLPP+WAAKAFWVAS HG WWP+++ G YNL I W L RRF AK
Sbjct 185 CLPWFIHSNWGYAFGVLPPFWAAKAFWVASAHGMWWPFVLIGVAYNLLIAWALLRRFLAK 244
Query 251 H 251
+
Sbjct 245 N 245
>gi|120401789|ref|YP_951618.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
vanbaalenii PYR-1]
gi|119954607|gb|ABM11612.1| putative antibiotic-transport integral membrane leucine and alanine
and valine rich protein ABC transporter [Mycobacterium
vanbaalenii PYR-1]
Length=251
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 168/241 (70%), Positives = 201/241 (84%), Gaps = 0/241 (0%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
RA AAFGRND+RGTYRDPLLVMLV+AP IWT G A++ P + LA+RY FDLV YYPL+
Sbjct 10 RAWAAFGRNDLRGTYRDPLLVMLVLAPAIWTIGTAVVVPRLSVALAQRYDFDLVPYYPLV 69
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
+T LLLTSII+ G LAAFLVLD++DAGT+TALRVTPV L+ FFGYRAATV+ VTT YV
Sbjct 70 VTGLLLLTSIIIVGGLAAFLVLDEIDAGTLTALRVTPVTLASFFGYRAATVVAVTTAYVA 129
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
T+ +G+L +V LIPIG+VAGLS+VVT+LLI+AVA+NK+QG+AM+R LG+LIAG+P
Sbjct 130 VTIPLTGLLPSSVVWPLIPIGMVAGLSSVVTMLLIVAVASNKVQGIAMLRLLGLLIAGIP 189
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRRFRAK 250
CLPWF+ S WNLAFGVLPPYWAAKAFWVA +GTWWPYL+GG V+N A W L RRF AK
Sbjct 190 CLPWFVDSAWNLAFGVLPPYWAAKAFWVACANGTWWPYLIGGVVFNAAAGWPLLRRFVAK 249
Query 251 H 251
+
Sbjct 250 N 250
>gi|291302139|ref|YP_003513417.1| hypothetical protein Snas_4681 [Stackebrandtia nassauensis DSM
44728]
gi|290571359|gb|ADD44324.1| hypothetical protein Snas_4681 [Stackebrandtia nassauensis DSM
44728]
Length=241
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/228 (44%), Positives = 142/228 (63%), Gaps = 1/228 (0%)
Query 13 LAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILT 72
+AAFGRNDIR RD +L +V P +++ + LL P+ T +L R YGFDLV YYPL ++
Sbjct 5 VAAFGRNDIRNIRRDTMLAGIVFGPFLYSVMMWLLPPI-TRLLDRLYGFDLVPYYPLAIS 63
Query 73 AFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVAT 132
F +L V G + L+L+D D T++ALRVTP P + YR ++ +T ++ +A
Sbjct 64 GFQILGPAAVLGCIGGMLLLEDKDQRTLSALRVTPAPPLAYPLYRVLLLIAITPVFEIAA 123
Query 133 MSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCL 192
++ S ++ + + IPI +VAG + + I +A NK++GLA+ RA GML+ +P +
Sbjct 124 LALSRRMDSESIVAAIPITVVAGATTAILATTIALLAKNKVEGLALFRAAGMLVFMVPLV 183
Query 193 PWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIV 240
PWFI S L FGVLPP+WAAKAFWV D G WPY + GA Y +V
Sbjct 184 PWFIDSPLGLLFGVLPPFWAAKAFWVMMDGGNHWPYTLTGAAYGAVLV 231
>gi|148657929|ref|YP_001278134.1| hypothetical protein RoseRS_3830 [Roseiflexus sp. RS-1]
gi|148570039|gb|ABQ92184.1| hypothetical protein RoseRS_3830 [Roseiflexus sp. RS-1]
Length=246
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/240 (36%), Positives = 130/240 (55%), Gaps = 3/240 (1%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ L A G D RG RD LL +++ P+I + P T L RY FDL YYP +
Sbjct 5 QTLRALGPIDTRGVRRDGLLSWMIVIPMIGALVLRWGLPPLTARLIERYAFDLTLYYPAL 64
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
L F ++ + ++ G + FL+LD+ D T+ AL+VTP+ + + YR A +V+T++ ++
Sbjct 65 LAYFFVVMTPVIFGTVIGFLLLDEKDDQTLIALQVTPLSTNQYLAYRIAIPVVLTSVMIL 124
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
SG+ L LI IG+VA A + L + A A NK+QG A+++ G+++ LP
Sbjct 125 VIFPLSGLSALPLTHILI-IGIVAAPLAPLFALYLAAFAQNKVQGFALIKLSGIVLL-LP 182
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFW-VASDHGTWWPYLVGGAVYNLAIVWVLFRRFRA 249
+FI S W LAFG+LP YW K +W + S W Y + +Y + L RRF A
Sbjct 183 TFAFFIQSPWELAFGLLPTYWLMKVYWLLESGQSDVWMYALVALIYQSVGIGALVRRFDA 242
>gi|147920488|ref|YP_685719.1| hypothetical protein RCIX1071 [uncultured methanogenic archaeon
RC-I]
gi|110621115|emb|CAJ36393.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length=245
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/241 (32%), Positives = 131/241 (55%), Gaps = 6/241 (2%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ L +FG D+ RDPLL +++ P + L P+ A FDLV +YP++
Sbjct 5 KMLRSFGSGDLLNVIRDPLLKWMIVIPFVIALAYRYLIPVIAAWAAPM--FDLVPFYPML 62
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
+ +++ + G FL+LD+ D G + AL+VTPV ++ + YR + ++V+ + +
Sbjct 63 MGLLIVMIPMFF-GVCIGFLLLDERDEGMLAALKVTPVSMAQYLAYRISAPVIVSFVTTL 121
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
+G+ L ++L+ + LVA L A + L+ A NK+QG A+ + LG +++ +P
Sbjct 122 IACPIAGLTGVDL-TTLVVVALVASLEAPLFALVFGVFAENKVQGFAIQKMLGTVLS-IP 179
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHG-TWWPYLVGGAVYNLAIVWVLFRRFRA 249
L + I W F V+P +W +AFW S G +WPY++G AV++ ++ VL + F
Sbjct 180 LLAYLIDPKWEFVFYVIPTFWPVRAFWEGSTGGANFWPYVLGAAVFHAVLILVLLKLFDR 239
Query 250 K 250
K
Sbjct 240 K 240
>gi|282164305|ref|YP_003356690.1| putative ABC transporter [Methanocella paludicola SANAE]
gi|282156619|dbj|BAI61707.1| putative ABC transporter [Methanocella paludicola SANAE]
Length=243
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/240 (33%), Positives = 132/240 (55%), Gaps = 10/240 (4%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+A+ + D++ RDP L ++ AP I LL P T + L YYPL+
Sbjct 5 KAVRSLSAADVKNVIRDPFLKWVIPAPFIMAIAFRLLIPGITAVAEPWVA--LSDYYPLL 62
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
L+ ++ ++ G + F++LD+ D T+TAL+VTP+ + + YR T ++++ +
Sbjct 63 LSMIVIFVPLLY-GIVVGFMLLDERDKDTLTALKVTPMSMGKYLAYRMTTPVIISVATTL 121
Query 131 ATMSCSGIL--EPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAG 188
G++ +P L L+ + L+A LSA L+ A A NK++G+A+ + LG +
Sbjct 122 LAYPLIGLVNVDPVL---LVAVTLLASLSAPFIALIFAAFARNKVEGMAIQKLLGGVFM- 177
Query 189 LPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGT-WWPYLVGGAVYNLAIVWVLFRRF 247
+P L +FI S W L FG+ P YW KAFWVA + G +WPY++ G + +L + +L +RF
Sbjct 178 IPVLAYFIPSWWQLLFGIFPTYWTLKAFWVACEGGQGFWPYIIAGLLVHLVFIGLLLKRF 237
>gi|156740973|ref|YP_001431102.1| hypothetical protein Rcas_0972 [Roseiflexus castenholzii DSM
13941]
gi|156232301|gb|ABU57084.1| conserved hypothetical protein [Roseiflexus castenholzii DSM
13941]
Length=246
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/241 (35%), Positives = 129/241 (54%), Gaps = 9/241 (3%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ + A G D+RG RD LL ++ PV + PL T L RY DL YYP +
Sbjct 5 QTVRALGPIDVRGVRRDSLLSWMIFIPVFGALLLRWGLPLLTARLIERYALDLTPYYPAL 64
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAA--TVMVVTTIY 128
L F + + ++ GA+ FL+LD+ D T+ AL+VTP+ L+ + YR A ++V ++
Sbjct 65 LGYFFVTMTPVIFGAVIGFLLLDEKDDQTLIALQVTPLSLTRYLAYRIAIPVLLVFAMLF 124
Query 129 VVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAG 188
V+ +S L + + IG+VA A + L + A A NK+QG A+++ G+++
Sbjct 125 VIFPLSGLSALS---LPHIAVIGIVAAPLAPLFALYLAAFAQNKVQGFALMKLSGIMLM- 180
Query 189 LPCLPWFISSNWNLAFGVLPPYWAAKAFWV--ASDHGTWWPYLVGGAVYNLAIVWVLFRR 246
LP + +F+ S W LAFGV+P YW K +W+ G W Y + +Y + VL RR
Sbjct 181 LPVVAFFVQSPWELAFGVIPTYWMVKVYWMLEGGQPGVWL-YALVALLYQSIGIGVLARR 239
Query 247 F 247
F
Sbjct 240 F 240
>gi|163848261|ref|YP_001636305.1| hypothetical protein Caur_2711 [Chloroflexus aurantiacus J-10-fl]
gi|222526171|ref|YP_002570642.1| hypothetical protein Chy400_2930 [Chloroflexus sp. Y-400-fl]
gi|163669550|gb|ABY35916.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
gi|222450050|gb|ACM54316.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
Length=247
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 127/240 (53%), Gaps = 4/240 (1%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ L A G D+R +RD +L ++ P++ + + P T L +Y FDL +YPL
Sbjct 5 QTLRALGPIDLRSVWRDKMLSWMIFLPILGAIILRVGLPPLTARLRAQYAFDLEPWYPLF 64
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
L+ F ++ + + G + FL+LD+ D T+ AL+VTP+ L + YR A +V+T +
Sbjct 65 LSYFFVVMTPAIFGIMIGFLLLDEKDDQTLKALQVTPLSLRNYLAYRIAIPVVLTIAMMF 124
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
S + + + ++ + + A A L + A+A NK+QG A+++ G+++ +P
Sbjct 125 ILFPLSALDDISIPATFL-TAIAAAPIAPALALFMAALAQNKVQGFALMKLAGVVLI-MP 182
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDH--GTWWPYLVGGAVYNLAIVWVLFRRFR 248
+ +W + F V+P YW K++ + SD T WPYL+ VY I+W+ +RF
Sbjct 183 IFAFIGDGHWEVLFMVIPTYWPMKSYLLLSDGQIATAWPYLIAAVVYPAIIIWLFGKRFN 242
>gi|225174795|ref|ZP_03728793.1| ABC-type transport system, permease component [Dethiobacter alkaliphilus
AHT 1]
gi|225169922|gb|EEG78718.1| ABC-type transport system, permease component [Dethiobacter alkaliphilus
AHT 1]
Length=243
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/243 (32%), Positives = 125/243 (52%), Gaps = 14/243 (5%)
Query 14 AAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTA 73
A F ++ + RDP++ +L+ P+ +AL+ +A GF L Y +IL +
Sbjct 6 ATFMISEWKKWQRDPMMGILIFYPLF----LALIGRYLLPYIADTSGFPLEMYADIILAS 61
Query 74 FLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATM 133
L+T +I GAL F VLDD D +T+++VTP+ L F +R + ++ I V+ +
Sbjct 62 LSLMTPLIF-GALIGFSVLDDRDDQILTSIQVTPLSLYQFLSFRMLMITFISFIAVMFVL 120
Query 134 SCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLP 193
S I + L + L+ I +A L A VT +I A++ NKI+G A+++ G ++ +P L
Sbjct 121 WFSDIYQLSL-AVLLSISFLAALGAPVTGFIINALSKNKIEGFAVMKGAGTVLI-VPVLS 178
Query 194 WFISSNWNLAFGVLPPYWAAKAFWVASDHG------TWWPYLVGGAVYNLAIVWVLFRRF 247
+ F V+P +W AKA VA HG T++ Y G VY + + + +R F
Sbjct 179 LLFTDAREFFFAVVPGFWPAKALSVAI-HGESVLLLTYYQYYFAGLVYVVLLNILAYRWF 237
Query 248 RAK 250
K
Sbjct 238 LGK 240
>gi|297560640|ref|YP_003679614.1| hypothetical protein Ndas_1679 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296845088|gb|ADH67108.1| hypothetical protein Ndas_1679 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=522
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/193 (30%), Positives = 100/193 (52%), Gaps = 0/193 (0%)
Query 2 RAISSLAGPRALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGF 61
R +S G + F R D+ GT RDPLL +++ APV+ + P +E + YGF
Sbjct 269 RPVSGRGGLPVIVRFARVDLFGTGRDPLLPLMLGAPVLLALVIRFAFPAASEFVLGSYGF 328
Query 62 DLVGYYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATV 121
DL + P++L A +LL ++ G + ++D D + LR +PV + + GYR V
Sbjct 329 DLAPHTPVVLAALVLLHVPMMFGVVGGLRAVEDSDENVLLVLRASPVSVPAYLGYRTVLV 388
Query 122 MVVTTIYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRA 181
V++ + A + SG++ G + + ++A L A + + A++ NK++ L +V+
Sbjct 389 TVLSLAGLAAALPLSGLMISGWTAPVAVALVLAALQAPLLTASMTALSANKVEALVVVKG 448
Query 182 LGMLIAGLPCLPW 194
+G L+A P W
Sbjct 449 IGALLALTPVAAW 461
>gi|335431148|ref|ZP_08558031.1| ABC transporter permease [Haloplasma contractile SSD-17B]
gi|334886853|gb|EGM25198.1| ABC transporter permease [Haloplasma contractile SSD-17B]
Length=243
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/247 (29%), Positives = 126/247 (52%), Gaps = 15/247 (6%)
Query 14 AAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTA 73
F +N+ + RDPL+ ++ P+++ + P + Y F + Y LI+
Sbjct 3 TEFIKNEFKKWLRDPLMKFMLFYPIVFGVIGRYVLPAIED--YNDY-FIIDAYKDLIVVI 59
Query 74 FLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATM 133
LL +I GAL F +LDD D ++ +++VTP+ + F +R V V++ + M
Sbjct 60 LALLIPLI-YGALTGFSILDDRDDDSLVSIKVTPLSIHQFLSFRFGMVTVLSFLSTSFVM 118
Query 134 --SCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPC 191
S G+ + G + +++ I L+A LSA++T +LI A A+NKI+G A+++ G+++ P
Sbjct 119 WFSDIGVNDMG-IGNILLISLLASLSAMMTGMLINAFASNKIEGFAVMKGTGVILV-FPI 176
Query 192 LPWFISSNWNLAFGVLPPYWAAKAF--WVASDHGTWWPYLVG---GAVYNLAIVWVLFRR 246
+ F + + F P YW AKA + D + Y V G VY + + W++++
Sbjct 177 VSLFFKDSKEMIFSFAPGYWPAKAISSLIKGDDALYLNYTVYMFVGFVYIIFLNWIVYKL 236
Query 247 F--RAKH 251
F R K
Sbjct 237 FLRRIKQ 243
>gi|225181850|ref|ZP_03735286.1| conserved hypothetical protein [Dethiobacter alkaliphilus AHT
1]
gi|225167434|gb|EEG76249.1| conserved hypothetical protein [Dethiobacter alkaliphilus AHT
1]
Length=242
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/192 (31%), Positives = 96/192 (50%), Gaps = 9/192 (4%)
Query 26 RDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSIIVAGA 85
RD +L++LV P + + + P +L + F LV +YPL L +T I+ G
Sbjct 17 RDGMLLLLVPTPFLMAAALRFILPWGDRLLIQEMNFSLVTWYPLSDVLVLAMTPIM-TGV 75
Query 86 LAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMV---VTTIYVVATMSCSGILEPG 142
+ AFL+LD+ D T +TPV + R A M+ T+I V+ S +E
Sbjct 76 IFAFLMLDERDERIGTYYSITPVGGHSYLWARLAAPMIWAFFTSIIVILLFGLS--IED- 132
Query 143 LVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISSNWNL 202
++ ++ + + L V++ LLIL +A NK++G+A+ + LI GLP WFI + +
Sbjct 133 -MAVILTVNTIGTLQGVISALLILVLAGNKVEGVALSKLTNALILGLPV-AWFIDAPYKY 190
Query 203 AFGVLPPYWAAK 214
LP YW +
Sbjct 191 LAAFLPSYWMGE 202
>gi|150389289|ref|YP_001319338.1| hypothetical protein Amet_1483 [Alkaliphilus metalliredigens
QYMF]
gi|149949151|gb|ABR47679.1| hypothetical protein Amet_1483 [Alkaliphilus metalliredigens
QYMF]
Length=238
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/228 (25%), Positives = 111/228 (49%), Gaps = 6/228 (2%)
Query 18 RNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLL 77
+ D++ RDP+L++ I P++ + + ++ T ++ + DL YY IL+ +L+
Sbjct 8 KADMKMIVRDPILILFFILPILISIVIRVMVHFLTPIIYDSFSLDLTQYYGYILSVVILM 67
Query 78 TSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSG 137
T +++ G +A FL++D+ D+ +++TP+ + + R + + +Y + T
Sbjct 68 TPLML-GTVAGFLLIDERDSRIQELIKITPIGYTGYLINRLMLPFIGSMVYTIVTYFILN 126
Query 138 ILE-PGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFI 196
I GLV SLI + + G+ + + ++A +K+QGL + G I + L +
Sbjct 127 IYHIEGLVLSLISV--LTGVQGIFLGYSLYSLAADKVQGLTYSKGFG--IFTILALSDLL 182
Query 197 SSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLF 244
+ W L P++ V T + ++ +Y LAI+ VLF
Sbjct 183 NVRWVSMLAALTPFYWITRLVVNFSLSTAFVAIMIHIIYFLAIMRVLF 230
>gi|266623836|ref|ZP_06116771.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288864350|gb|EFC96648.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length=232
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/229 (25%), Positives = 107/229 (47%), Gaps = 16/229 (6%)
Query 22 RGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSII 81
+ DP++ P I + P F R F L GYYP+ F LL SI+
Sbjct 13 KQIKSDPMMFAACFTPFIMGALIKFGIPFFE----RITKFSLQGYYPI----FDLLLSIM 64
Query 82 VAGALA---AFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSGI 138
L A + L+++D +TP+ + + R +++ + +
Sbjct 65 APVLLCFAFAMITLEEIDDKVSRYFSITPLGKAGYLFTRLVVPAIISAVIAFIVLLLFS- 123
Query 139 LEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISS 198
LE +I + L+ + A++ L+I+ ++ NK++G+A+ + + + G+P +P+FI S
Sbjct 124 LEKLPTRMMIGLALLGSVQAIIVSLMIITLSGNKLEGMAVTKLSALTLLGIP-VPFFIDS 182
Query 199 NWNLAFGVLPPYWAAKAFWVASDHGTWWPY-LVGGAVYNLAIVWVLFRR 246
+ A G LP +W AKA V ++ ++P LV ++ ++ LFR+
Sbjct 183 YYQFAVGFLPSFWVAKA--VQNEAVLYFPIALVVALIWYYFLIKRLFRK 229
>gi|162447632|ref|YP_001620764.1| ABC transporter permease [Acholeplasma laidlawii PG-8A]
gi|161985739|gb|ABX81388.1| ABC-type transport system, permease component [Acholeplasma laidlawii
PG-8A]
Length=237
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/248 (26%), Positives = 127/248 (52%), Gaps = 38/248 (15%)
Query 19 NDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLT 78
++++G RD + + ++ P+I L P F + A ++V +++TAF
Sbjct 9 HELKGILRDKMYMFFMLYPLILVLVSLWLVP-FIKDNASELAANIVVLVFIMMTAF---- 63
Query 79 SIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVF----------FGYRAATVMVVTTIY 128
+ GA+ F +LDD D + +LR+TP+ +S + FG A +++ T +
Sbjct 64 ---IYGAVTGFTLLDDQDDQVLYSLRITPIKVSNYILIKLGISYLFGLSATLLVIFITNF 120
Query 129 VVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAG 188
+ A+ IL+ L I +++ L A + LL+ A A+NK++G +++ G LI
Sbjct 121 LDAS-----ILDVFL------IAILSSLQAPIVALLVNAFASNKVEGFVVMKVSG-LILL 168
Query 189 LPCLPWFISSNW-NLAFGVLPPYWAAKAFWVA---SDH--GTWWPYLVGGAVYNLAIVWV 242
+P FI +NW L G++P +W A+ ++ S++ T++ + +G +V NL + +
Sbjct 169 IPVASIFI-TNWTELLLGIVPGFWVARMISMSLIPSEYLLNTYYYFAIGISV-NLLFIAL 226
Query 243 LFRRFRAK 250
L++++ +
Sbjct 227 LYKKYTKR 234
>gi|255306174|ref|ZP_05350346.1| putative ABC transporter, permease protein [Clostridium difficile
ATCC 43255]
Length=232
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/199 (27%), Positives = 94/199 (48%), Gaps = 17/199 (8%)
Query 22 RGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSII 81
R DP++ P + + L P L R F L YYP+ F LL SI+
Sbjct 13 RQIKSDPMMFAACFTPFVMGALIKLGIPF----LERITDFSLQAYYPI----FDLLLSIM 64
Query 82 VAGALA---AFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTI--YVVATMSCS 136
L A + L+++D +TP+ S + R +++ + ++V +
Sbjct 65 APVLLCFAFAMITLEEIDDKVSRYFSITPLGKSGYLFTRLGVPSIISAVIAFIVLLLFSL 124
Query 137 GILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFI 196
L G+ I + L+ + A++ L+I+ +++NK++G+A+ + + + G+P P+FI
Sbjct 125 EKLSIGMT---ICLALLGSVQAIIVSLMIITLSSNKLEGMAVTKLAALTLLGIPA-PFFI 180
Query 197 SSNWNLAFGVLPPYWAAKA 215
S + A G LP +W AKA
Sbjct 181 DSYYQFAVGFLPSFWVAKA 199
>gi|225018216|ref|ZP_03707408.1| hypothetical protein CLOSTMETH_02154 [Clostridium methylpentosum
DSM 5476]
gi|224949013|gb|EEG30222.1| hypothetical protein CLOSTMETH_02154 [Clostridium methylpentosum
DSM 5476]
Length=232
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/199 (27%), Positives = 95/199 (48%), Gaps = 17/199 (8%)
Query 22 RGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSII 81
+ DP++ +P I T + P L R F L YYP+ F LL SI+
Sbjct 13 KQIKSDPMMFAACFSPFIMGTLIKFGIPF----LERITKFSLQVYYPI----FDLLLSIM 64
Query 82 VAGALA---AFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTI--YVVATMSCS 136
L A + L+++D +TP+ S + R +++ + ++V +
Sbjct 65 APVLLCFAFAMITLEEIDDKVSRYFSITPLGKSGYLFTRLGVPSIISAVIAFIVLLLFSL 124
Query 137 GILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFI 196
L G+ I + L+ + A++ L+I+ +++NK++G+A+ + + + G+P P+FI
Sbjct 125 EKLSIGMT---ICLALLGSVQAIIVSLMIITLSSNKLEGMAVTKLAALTLLGIPA-PFFI 180
Query 197 SSNWNLAFGVLPPYWAAKA 215
S + A G LP +W AKA
Sbjct 181 DSYYQFAVGFLPSFWVAKA 199
>gi|315647137|ref|ZP_07900250.1| hypothetical protein PVOR_17389 [Paenibacillus vortex V453]
gi|315277339|gb|EFU40668.1| hypothetical protein PVOR_17389 [Paenibacillus vortex V453]
Length=241
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/196 (28%), Positives = 93/196 (48%), Gaps = 4/196 (2%)
Query 19 NDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLT 78
D+R ++DP+L+ +I P+ P+ + L Y F L Y + L++T
Sbjct 10 KDLRHAWKDPVLMAALIGPLAILFLSRFGFPVAVDWLEVNYSFHLELYRGFA-ASLLVVT 68
Query 79 SIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSGI 138
++ G L L+LD+ D + VTP+ + YR A ++ T+ + S +
Sbjct 69 IPMLTGMLTGLLMLDERDENMIAYYAVTPLTSKGYLFYRMALPFLLCTVLSFVYLFFSNL 128
Query 139 LEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISS 198
E + S + + L+ L A + L + A + NK++GLA+ + G+ IAG P + F+
Sbjct 129 SE--VRSYNVFVLLLLALEAPMFSLFLAAFSTNKVEGLALSKLGGLFIAG-PVVAHFVPG 185
Query 199 NWNLAFGVLPPYWAAK 214
W + LP YW AK
Sbjct 186 AWQVVGAWLPTYWPAK 201
>gi|344327780|gb|EGW39193.1| putative membrane protein [Desulfosporosinus sp. OT]
Length=233
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/201 (29%), Positives = 101/201 (51%), Gaps = 15/201 (7%)
Query 20 DIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTS 79
DIR RD +L + + P+I + L L+ GF + Y+ ILT L L+
Sbjct 9 DIRRLLRDQILRIFLFVPLIALVAIKLFLIFGEPRLSELTGFLMAPYHGYILTICLTLSP 68
Query 80 IIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATM-SCSGI 138
++ G + AFL++D+ D + V P+ + GY A+ +++ + + T+ SC +
Sbjct 69 YLL-GTVTAFLMIDERDESIYELMSVMPIG---YKGYIASRLLIPFILCIPYTLLSCFVL 124
Query 139 LEPGL-VSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGML----IAGLPCLP 193
L VS +I I L++G+ ++V LL+ ++A+NK+QGL + L + ++ L L
Sbjct 125 NLVDLSVSKVIIIALLSGVQSIVVTLLMFSLADNKVQGLTYSKGLNIFVLAAVSDLVNLR 184
Query 194 WFISSNWNLAFGVLPPYWAAK 214
W SN + +P YW +
Sbjct 185 WI--SNIS---AFIPFYWTTQ 200
>gi|298388109|ref|ZP_06997654.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298259139|gb|EFI02018.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length=232
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/238 (25%), Positives = 118/238 (50%), Gaps = 26/238 (10%)
Query 21 IRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSI 80
+R + D +L ++ P++ + PL + F+L YYP IL FL +
Sbjct 12 VRNIFSDGMLSAIICIPLLLAAIYRFVFPLIVQHYPMLKDFNL--YYP-ILDLFLAIMCP 68
Query 81 IVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMV------VTTIYVVATMS 134
+ + +VLD+ D + +TP+ GY + +++ + + +++ S
Sbjct 69 YMICFASVLVVLDETDMKINRYITITPLGKK---GYLISRLLIPVLFAAIVSFVLLSFCS 125
Query 135 CSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPW 194
SG+ L ++ I I ++A + +VV ++ILA A NK++G+A+ + +++ GL +P+
Sbjct 126 VSGM---SLWTTFI-ISILATILSVVAAMIILAYAGNKVEGMALAKVSALVMVGL-IIPF 180
Query 195 FISSNWNLAFGVLPPYWAAKAFWVASDHGTWWP--YLVGGAVYNLAIVWVLFRRFRAK 250
I+ + F LP +W AK F +++++ P +L GG +Y +L+ R+ K
Sbjct 181 VITDSTQYIFSFLPSFWIAK-FLISNNYWFILPTIFLSGGLIY------ILYNRYSTK 231
>gi|253571783|ref|ZP_04849189.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251838991|gb|EES67076.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length=232
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/232 (25%), Positives = 111/232 (48%), Gaps = 14/232 (6%)
Query 21 IRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSI 80
IR + D +L ++ P++ + PL + F L YYP IL FL +
Sbjct 12 IRNIFSDGMLSAIICIPLLLAAIYRFVFPLIVQHYPMLKDFSL--YYP-ILDLFLAIMCP 68
Query 81 IVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSGILE 140
+ + +VLD+ D + +TP+ + R ++ I +S + +
Sbjct 69 YMICFASVLVVLDETDMKINRYITITPLGKKGYLISRLIIPVLFAAIVSFVLLSFCSVSD 128
Query 141 PGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISSNW 200
L ++ I I ++A + +VV ++ILA A NK++G+A+ + +++ GL +P+ I+ +
Sbjct 129 MSLWTTFI-ISILATILSVVAAMIILAYAGNKVEGMALAKVSALVMVGL-IIPFVITDST 186
Query 201 NLAFGVLPPYWAAKAFWVASDHGTWWP--YLVGGAVYNLAIVWVLFRRFRAK 250
F LP +W AK F +++++ P +L GG ++ +L+ R+ K
Sbjct 187 QYVFSFLPSFWIAK-FLISNNYWFILPAIFLSGG------LICILYNRYSTK 231
>gi|341581243|ref|YP_004761735.1| hypothetical protein GQS_00775 [Thermococcus sp. 4557]
gi|340808901|gb|AEK72058.1| hypothetical protein GQS_00775 [Thermococcus sp. 4557]
Length=234
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/245 (27%), Positives = 115/245 (47%), Gaps = 27/245 (11%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVG-YYPL 69
R A+ + D++ RDP+LV ++ + L+ +L RY D +G YYPL
Sbjct 5 RKFASIYKTDLKLLRRDPMLV--------YSVAMTLVL-----LLIVRYFKDRIGVYYPL 51
Query 70 ILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYV 129
+ +L +I G + F++ D+ + T+ AL+V P+ F YR VVT V
Sbjct 52 LALLMMLFIPMIF-GMVPGFMMADEKEDKTIQALQVIPISSEAFLAYRLTGASVVT---V 107
Query 130 VATMSCSGILEPGLVSS-LIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAG 188
V T IL+ + + L+ + ++ L + LLI + +++Q L + LG L+
Sbjct 108 VMTGLAPTILDIEISRNGLLALMVLFVLEVWIYGLLITVFSESRMQALTASKVLGWLLML 167
Query 189 LPCLPWFI-----SSNWNLAFGVLPPYWAAKAFW--VASDHGTWWPYLVGGAVYNLAIVW 241
P + + S++W+ LP YW + F +D+G + +V + + +V
Sbjct 168 PPLIKLVVEWRDLSTDWSKFTAFLPTYWLYRVFEGITLNDYGDFPTAVVVHLTWLVPLV- 226
Query 242 VLFRR 246
VLFRR
Sbjct 227 VLFRR 231
>gi|322367870|ref|ZP_08042440.1| putative ABC transporter [Haladaptatus paucihalophilus DX253]
gi|320552577|gb|EFW94221.1| putative ABC transporter [Haladaptatus paucihalophilus DX253]
Length=515
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/230 (27%), Positives = 106/230 (47%), Gaps = 14/230 (6%)
Query 19 NDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLT 78
D + RDP+L P++ + ++ P+ T LA DL YYP+I + +
Sbjct 282 TDAKNWIRDPMLAFAAAGPLLLAGVIRVIAPVITTRLAGI--VDLTVYYPVIAGSMAVCG 339
Query 79 SIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSGI 138
I G + L+L+D D +T+ R +P+ L+ + YR T + + +
Sbjct 340 PGIF-GFIVGMLILEDRDTDILTSYRTSPLSLNGYLLYRGCTTFFFSFFSTLPAL----- 393
Query 139 LEPGLVSSLIPI----GLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPW 194
L GLV S PI ++ LS V L++ VA+N I+G+A+ + + +++ G +
Sbjct 394 LVVGLVQSSAPILLGTAVLGALSGPVIGLVLGLVASNSIEGIALGKFMNIVLVGPALVIA 453
Query 195 FISSNWNLAFGVLPPYWAAKAF--WVASDHGTWWPYLVGGAVYNLAIVWV 242
+S +LP YW K + V T+ + +G V+ +A+V V
Sbjct 454 VVSEPLQFLASILPMYWPVKVYVAGVTGQSNTFALFAIGIGVHLIALVSV 503
>gi|254977268|ref|ZP_05273740.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-66c26]
gi|255094597|ref|ZP_05324075.1| putative ABC transporter, permease protein [Clostridium difficile
CIP 107932]
gi|255316353|ref|ZP_05357936.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-76w55]
7 more sequence titles
Length=232
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/160 (28%), Positives = 82/160 (52%), Gaps = 13/160 (8%)
Query 61 FDLVGYYPLILTAFLLLTSIIVAGALA---AFLVLDDVDAGTMTALRVTPVPLSVFFGYR 117
F L YYP+ F LL SI+ L A + L+++D +TP+ S + R
Sbjct 48 FSLQTYYPI----FDLLLSIMAPVLLCFAFAMITLEEIDDKVSRYFSITPLGKSGYLFTR 103
Query 118 AATVMVVTTI--YVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQG 175
+++ + ++V + L G+ I + L+ + A++ L+I+ +++NK++G
Sbjct 104 LGVPSIISAVIAFIVLLLFSLEKLSIGMT---ICLALLGSVQAIIVSLMIITLSSNKLEG 160
Query 176 LAMVRALGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKA 215
+A+ + + + G+P P+FI S + A G LP +W AKA
Sbjct 161 MAVTKLAALTLLGIPA-PFFIDSYYQFAVGFLPSFWVAKA 199
>gi|89893660|ref|YP_517147.1| hypothetical protein DSY0914 [Desulfitobacterium hafniense Y51]
gi|89333108|dbj|BAE82703.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=260
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/248 (25%), Positives = 119/248 (48%), Gaps = 24/248 (9%)
Query 17 GRNDIRGTYR-----------DPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVG 65
GR ++ T R D +L++L+ AP ++ V + P L ++ +
Sbjct 22 GRQAMKQTLRLFQIGLRQITYDGMLLVLLAAPFLFGLLVKIGIPKADAWLFQQGALSIKP 81
Query 66 YYPLILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVT 125
+Y L ++LT +++A ++AFL+L++ D GT ++TP+ + R MV +
Sbjct 82 WYSLADGMIIILTPMLLA-MVSAFLLLEERDEGTGAYYQITPLEGYAYLAARIGLPMVWS 140
Query 126 TI-YVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGM 184
+ +V TM C GI + ++ GL++ L+ ++++++A N+++GLA+ + +
Sbjct 141 FLCLIVVTMLC-GIAHLTFLQ-ILAAGLLSTLTGAALAMMVVSLAGNRVEGLAISKLTSL 198
Query 185 LIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWV-- 242
+ GL + WF+ + LP YW K + W+ + GA + + +W+
Sbjct 199 NLLGLL-MVWFVPRPYQYLGAFLPGYWVGK---IVEQGADWFSF---GAGFLICCLWITA 251
Query 243 LFRRFRAK 250
RRF K
Sbjct 252 FTRRFLRK 259
>gi|345022748|ref|ZP_08786361.1| putative ABC transporter [Ornithinibacillus sp. TW25]
Length=260
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 118/250 (48%), Gaps = 17/250 (6%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ + F + D + RDPL+V+++ P+ V P L++ F L+ ++ LI
Sbjct 15 KQVELFLKGDAKNVLRDPLMVLVLGIPIYLFILVKFGIPFVDIQLSKYTYFQLMDHFDLI 74
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAA----TVMVVTT 126
+ F++L ++ G L FL+LD+ D G + + +TP+ F GYR +++T
Sbjct 75 I-CFIVLIVPMMIGMLTGFLLLDEKDDGIINYMAITPMKKLGFIGYRVTLPLIISFIIST 133
Query 127 IYVVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLI 186
+ V+ + + GL+ ++ + + G ++T+ L ++ NK++G++ + + +
Sbjct 134 VLVLLFLIGEESVNWGLLLIVLVVVSLFG--PLITMYL-ASLCENKVEGISYAKLISIFS 190
Query 187 AGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTW------WPYLVGGAVYNLAI- 239
P + + S W ++P W + + S G + W L G V N++I
Sbjct 191 VA-PIVTYMFESWWTGFAYIIPVTWVVELSY-TSITGEYFGLIDNWAILYLGGVTNISIF 248
Query 240 VWVLFRRFRA 249
++ +++ R
Sbjct 249 LYFFYQKLRK 258
>gi|309776796|ref|ZP_07671770.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308915544|gb|EFP61310.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
Length=240
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/230 (23%), Positives = 105/230 (46%), Gaps = 11/230 (4%)
Query 21 IRGTYRDPLLVMLVIAPVIWTTGVALLTP----LFTEMLARRYGFDLVGYYPLILTAFLL 76
+R +RD +L++++ AP++ L P +ML + +V YYPL+ F +
Sbjct 12 LRFIHRDMMLLVVLFAPLLCMLCYRFLIPALELFLCDMLQQ--SAVIVPYYPLLNIFFCM 69
Query 77 LTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCS 136
L + A AA ++L++ D T L +TP+ + R ++ IY + +
Sbjct 70 LAPAMFCFA-AAMILLEERDEHTAGYLMITPLQRRGYLASRLLLPAIIACIYTCILLPYA 128
Query 137 GILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFI 196
+ + + L+ + L +++ +L ++ ++NK++G+A+ + + I PWF+
Sbjct 129 ALSKLSYLEILL-YAITGALQGLISAMLTISCSSNKLEGMAITKLSSLFILA-SAAPWFL 186
Query 197 SSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWVLFRR 246
+ P +W KA S+ +P ++ LA+ W F+R
Sbjct 187 HDAIQYLLSLFPSFWLGKAV-AESNLFFLFPSFFTALLWMLAL-WKKFQR 234
>gi|254975391|ref|ZP_05271863.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-66c26]
gi|255314520|ref|ZP_05356103.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-76w55]
gi|255517195|ref|ZP_05384871.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-97b34]
6 more sequence titles
Length=238
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/249 (22%), Positives = 116/249 (47%), Gaps = 25/249 (10%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ + AF + + RD +L ++ ++P++ + PL + ++ YY L
Sbjct 3 KIINAF-KQEFEQIKRDAMLFIVCVSPILCGVFIKFGIPLIQNISLNKF------YYQLN 55
Query 71 LTAFLLLTSIIVAGAL-------AAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMV 123
L + L+ +++A + ++L ++D L VTP+ + GY + +
Sbjct 56 LEPYFLMFDLLLAFITPFMFFFASTMVILGEIDDSISRYLIVTPLGKT---GYLISRFGI 112
Query 124 VTTIYVVATMSCSGILEPGLVSSLI--PIGLVAGLSAVVTLLLILAVANNKIQGLAMVRA 181
T+ + TM +S L+ I L+ L V+ +L++++++NK++G+ + +
Sbjct 113 PGTLAFIITMILLIFFSLTKISFLLNLSISLLVLLQGVIISILVISLSSNKLEGMVITKF 172
Query 182 LGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVW 241
G+ + G+ P+FI + LP +W +KAF D+ + Y+ V +L +
Sbjct 173 SGVFMMGILA-PFFILNKAQYILFFLPTFWISKAF--KEDN---YIYMFISIVISLIWIL 226
Query 242 VLFRRFRAK 250
+LF++F K
Sbjct 227 LLFKKFSKK 235
>gi|332298444|ref|YP_004440366.1| hypothetical protein Trebr_1815 [Treponema brennaborense DSM
12168]
gi|332181547|gb|AEE17235.1| hypothetical protein Trebr_1815 [Treponema brennaborense DSM
12168]
Length=237
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/211 (24%), Positives = 102/211 (49%), Gaps = 15/211 (7%)
Query 18 RNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFD--LVGYYPLILTAFL 75
R ++ D +L ++ AP + + L P LA R+ F + +Y L
Sbjct 13 RMFVKQIAGDAMLAVVFAAPFLAGSVFRFLVPF----LAERFAFTPRIAPFYQLFDVFLC 68
Query 76 LLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSC 135
+LT + A +A ++L ++D +A V+P+ GY + + + T I T+
Sbjct 69 ILTPYMCCFA-SAMIMLGELDDHVTSAFFVSPLGRD---GYLVSRLFIPTLIGAAGTVLI 124
Query 136 SGI--LEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLP 193
+ L P + + + + L+ SA ++ LL +A A N+++G+A+ + G+++ G +P
Sbjct 125 FSLFHLTPASLGTRVTLALLTACSACISALLTVAFARNRVEGMALAKLSGIMMLG-ALVP 183
Query 194 WFISSNWNLAFGVLPPYWAAKAFWVASDHGT 224
+ ++ +L F LPP W ++ ++ S H +
Sbjct 184 YVLNGRASLYFAFLPPLWISR--FMQSGHAS 212
>gi|219668041|ref|YP_002458476.1| hypothetical protein Dhaf_2003 [Desulfitobacterium hafniense
DCB-2]
gi|219538301|gb|ACL20040.1| hypothetical protein Dhaf_2003 [Desulfitobacterium hafniense
DCB-2]
Length=235
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/233 (25%), Positives = 112/233 (49%), Gaps = 13/233 (5%)
Query 21 IRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSI 80
+R D +L++L+ AP ++ V + P L ++ + +Y L ++LT +
Sbjct 12 LRQITYDGMLLVLLAAPFLFGLLVKIGIPKADAWLFQQGALSIKPWYSLADGMIIILTPM 71
Query 81 IVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTI-YVVATMSCSGIL 139
++A ++AFL+L++ D GT ++TP+ + R MV + + +V TM C GI
Sbjct 72 LLA-MVSAFLLLEERDEGTGAYYQITPLEGYAYLAARIGLPMVWSFLCLIVVTMLC-GIA 129
Query 140 EPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISSN 199
+ ++ GL++ L+ ++++++A N+++GLA+ + L + WF+
Sbjct 130 HLTFLQ-ILAAGLLSTLTGAALAMMVVSLAGNRVEGLAISKLT-SLNLLGLLMVWFVPRP 187
Query 200 WNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVWV--LFRRFRAK 250
+ LP YW K + W+ + GA + + +W+ RRF K
Sbjct 188 YQYLGAFLPGYWVGK---IVEQGADWFSF---GAGFLICCLWITAFTRRFLRK 234
>gi|18976951|ref|NP_578308.1| hypothetical protein PF0579 [Pyrococcus furiosus DSM 3638]
gi|18892573|gb|AAL80703.1| hypothetical protein PF0579 [Pyrococcus furiosus DSM 3638]
Length=230
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/210 (28%), Positives = 92/210 (44%), Gaps = 26/210 (12%)
Query 15 AFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVG--YYPLILT 72
A + D++ RDP+L+ VI +F +L RY D VG YYPL L
Sbjct 5 AIYKTDVKLLRRDPMLLYSVIM-------------VFVLLLIVRYFKDKVGIYYYPLALL 51
Query 73 AFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVAT 132
L + I G L F++ D+ + T+ AL+V P+ F YR +VT V
Sbjct 52 TMLFIPMIF--GMLPGFVMADEKEEKTIQALQVIPISSEAFLAYRLTWASIVTA---VLG 106
Query 133 MSCSGILEPGLVSSLIPIGLVAGLSAV-VTLLLILAVANNKIQGLAMVRALGMLIAGLPC 191
+ IL+ L + + +V + V + LLI + +++Q + + + LG + P
Sbjct 107 FASPYILDIELSRKGLAMLIVLFVLEVWIYGLLITVFSESRMQAITVSKVLGWFLMLPPL 166
Query 192 LPWFI-----SSNWNLAFGVLPPYWAAKAF 216
+ + S +W+ LP YW K F
Sbjct 167 IKLVVLWRNLSRDWSEFTAFLPTYWLYKVF 196
>gi|319645533|ref|ZP_07999765.1| DacC protein [Bacillus sp. BT1B_CT2]
gi|317392419|gb|EFV73214.1| DacC protein [Bacillus sp. BT1B_CT2]
Length=567
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/184 (29%), Positives = 89/184 (49%), Gaps = 8/184 (4%)
Query 24 TYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSIIVA 83
T + L +AP + A PL E+ F++ Y LI++ +L +I+
Sbjct 7 TRTESQLAFYGLAPFLLIIVTAAGVPLSAELTE----FNITPYRHLIMSLAMLFIPLIL- 61
Query 84 GALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSGILEPGL 143
G ++ F++LD+ D + VTP+ + R M +T Y + + G++ PG
Sbjct 62 GVMSGFILLDERDENMIQYFAVTPLSKRGYVMIRLILPMAMTLCYSILLFASGGLMAPGA 121
Query 144 VSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISSNWNLA 203
V+ L + +V + + TLLL VA NK++GLA+++ +L +P +FI W L
Sbjct 122 VNLLFVLIMVTLEAPIYTLLLAAYVA-NKVEGLALMKGFSLLTL-MPAAVYFIPVPWQL- 178
Query 204 FGVL 207
FGV
Sbjct 179 FGVF 182
>gi|240102888|ref|YP_002959197.1| hypothetical protein TGAM_0831 [Thermococcus gammatolerans EJ3]
gi|239910442|gb|ACS33333.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length=234
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (27%), Positives = 94/209 (45%), Gaps = 30/209 (14%)
Query 18 RNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLL 77
+ D++ RDP+LV V +++ + RY D +G Y LT ++L
Sbjct 12 KTDLKLLRRDPMLVYSVAMTLVF-------------LFIVRYFKDRIGVYYPTLTLLVML 58
Query 78 TSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSG 137
++ G + F++ D+ + T+ AL+V P+ F YR VVT VV T
Sbjct 59 FIPMIFGMIPGFMMADEKEDKTIQALQVIPISSEAFLAYRLTWASVVT---VVMTGLAPT 115
Query 138 ILEPGLVSSLIPIGLVAGLSAVVTL-----LLILAVANNKIQGLAMVRALGMLIAGLPCL 192
IL+ + + GL+A ++ V LLI A +++Q L + + +G L+ P +
Sbjct 116 ILDIEISRN----GLLALMALFVLEVWIYGLLITVFAESRMQALTVSKIIGWLLMLPPLI 171
Query 193 PWFI-----SSNWNLAFGVLPPYWAAKAF 216
+ S++W+ LP YW K F
Sbjct 172 KLVVEWRNLSTDWSKFTAFLPTYWLYKVF 200
>gi|52785884|ref|YP_091713.1| hypothetical protein BLi02133 [Bacillus licheniformis ATCC 14580]
gi|52348386|gb|AAU41020.1| DacC [Bacillus licheniformis ATCC 14580]
Length=742
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/183 (29%), Positives = 89/183 (49%), Gaps = 8/183 (4%)
Query 24 TYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLLLTSIIVA 83
T + L +AP + A PL E+ F++ Y LI++ +L +I+
Sbjct 10 TRTESQLAFYGLAPFLLIIVTAAGVPLSAELTE----FNITPYRHLIMSLAMLFIPLIL- 64
Query 84 GALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVVATMSCSGILEPGL 143
G ++ F++LD+ D + VTP+ + R M +T Y + + G++ PG
Sbjct 65 GVMSGFILLDERDENMIQYFAVTPLSKRGYVMIRLILPMAMTLCYSILLFASGGLMAPGA 124
Query 144 VSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISSNWNLA 203
V+ L + +V + + TLLL VA NK++GLA+++ +L +P +FI W L
Sbjct 125 VNLLFVLIMVTLEAPIYTLLLAAYVA-NKVEGLALMKGFSLLTL-MPAAVYFIPVPWQL- 181
Query 204 FGV 206
FGV
Sbjct 182 FGV 184
>gi|325970506|ref|YP_004246697.1| hypothetical protein SpiBuddy_0676 [Spirochaeta sp. Buddy]
gi|324025744|gb|ADY12503.1| hypothetical protein SpiBuddy_0676 [Spirochaeta sp. Buddy]
Length=237
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (29%), Positives = 65/132 (50%), Gaps = 10/132 (7%)
Query 87 AAFLVLDDVDAGTMTALRVTPVPLSVFF----GYRAATVMVVTTIYVVATMSCSGILEPG 142
A ++LD+ + L VTP+ + G A +V+ + + A L P
Sbjct 79 CAMVMLDEHEQNLSQYLWVTPLQTHGYLVSRLGLTAGFASLVSMLLIAAFR-----LTPW 133
Query 143 LVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLPCLPWFISSNWNL 202
+ SLI ++A + L + A + NK++G+AM + G+ + GLP +P+F+ S+W
Sbjct 134 NLPSLIGTSVLAAICGFAVSLFLFAFSRNKVEGMAMGKLSGLFLMGLP-VPFFLHSSWQY 192
Query 203 AFGVLPPYWAAK 214
F LP YW A+
Sbjct 193 VFSPLPSYWLAR 204
>gi|57640627|ref|YP_183105.1| permease [Thermococcus kodakarensis KOD1]
gi|57158951|dbj|BAD84881.1| predicted permease [Thermococcus kodakarensis KOD1]
Length=234
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/211 (25%), Positives = 91/211 (44%), Gaps = 20/211 (9%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
R R D++ RDP+L +++ + L+ +L RY D +G Y +
Sbjct 5 RKFGTIYRTDLKLLRRDPML--------LYSVAMTLVL-----LLIVRYFKDRIGVYYSL 51
Query 71 LTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIYVV 130
L L+ ++ G L F++ D+ + T+ AL+V P+ F YR +VT +
Sbjct 52 LALLGLIFIPMIFGMLPGFMMADEKEDKTIQALKVIPISSEAFLAYRLTWASIVTALLTA 111
Query 131 ATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAGLP 190
A I P ++ + + L + LLI + +++Q L + + LG L+ P
Sbjct 112 AAPYILDIEIPQ--KGILALIALFLLEVWIYGLLITVFSESRMQALTVSKVLGWLLMLPP 169
Query 191 CLPWFI-----SSNWNLAFGVLPPYWAAKAF 216
+ + S++W+ LP YW K F
Sbjct 170 VIKLVVVWRNLSTDWSRFTAFLPTYWLYKVF 200
>gi|242398582|ref|YP_002994006.1| Predicted permease [Thermococcus sibiricus MM 739]
gi|242264975|gb|ACS89657.1| Predicted permease [Thermococcus sibiricus MM 739]
Length=234
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/213 (24%), Positives = 92/213 (44%), Gaps = 24/213 (11%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVG-YYPL 69
+ A + D++ RDP+L+ V T + +L RY D +G YYP+
Sbjct 5 KKFGAIYKTDLKLLRRDPMLLYSV-------------TMILVLLLIVRYFKDRIGVYYPI 51
Query 70 ILTAFLLLTSI-IVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIY 128
+ A L++ I ++ G + F++ D+ + T+ AL+V P+ F YR + T +
Sbjct 52 L--ALLVMVFIPMILGMIPGFMMADEKEDKTIQALQVIPISSEAFLTYRLTWTSITTAVL 109
Query 129 VVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTLLLILAVANNKIQGLAMVRALGMLIAG 188
V + I + +G++ + LLI + +++Q L + + LG +
Sbjct 110 TVISPKILAIEFSQ--KGFLALGVLFVFEVWIYGLLITVFSESRMQALTVSKVLGWFLML 167
Query 189 LPCLPWFI-----SSNWNLAFGVLPPYWAAKAF 216
P + + S +W+ LP YW K F
Sbjct 168 PPLIKLVVVWRNLSMDWSKFTAFLPTYWLYKVF 200
>gi|255655774|ref|ZP_05401183.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-23m63]
gi|296450991|ref|ZP_06892738.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP08]
gi|296879043|ref|ZP_06903039.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP07]
gi|296260209|gb|EFH07057.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP08]
gi|296429916|gb|EFH15767.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP07]
Length=238
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/249 (22%), Positives = 117/249 (47%), Gaps = 25/249 (10%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVGYYPLI 70
+ + AF + + RD +L ++ ++P++ + PL + ++ YY L
Sbjct 3 KIINAF-KQEFEQIKRDAMLFIVCVSPILCGVFIKFGIPLIQNISLNKF------YYQLN 55
Query 71 LTAFLLLTSIIVAGAL-------AAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMV 123
L +LL+ +++A + +VL ++D L VTP+ + GY + +
Sbjct 56 LEPYLLMFDLLLAFITPFMFFFASTMVVLGEIDDSISRYLIVTPLGKT---GYLVSRFGI 112
Query 124 VTTIYVVATMSCSGILEPGLVSSLI--PIGLVAGLSAVVTLLLILAVANNKIQGLAMVRA 181
+ + TM +S L+ I L+ L +V+ +L++++++NK++G+ + +
Sbjct 113 PGILAFIITMILLIFFSLTRISFLLNLSISLLVLLQSVIISILVISLSSNKLEGMVITKF 172
Query 182 LGMLIAGLPCLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVW 241
G+ + G+ P+FI + LP +W +KAF D+ + Y+ + +L +
Sbjct 173 SGVFMMGILA-PFFILNKVQYILFFLPTFWLSKAF--KEDN---YIYMFISIIISLIWIL 226
Query 242 VLFRRFRAK 250
+LF++F K
Sbjct 227 LLFKKFSKK 235
>gi|212223979|ref|YP_002307215.1| permease [Thermococcus onnurineus NA1]
gi|212008936|gb|ACJ16318.1| Hypothetical permease [Thermococcus onnurineus NA1]
Length=234
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/251 (24%), Positives = 109/251 (44%), Gaps = 39/251 (15%)
Query 11 RALAAFGRNDIRGTYRDPLLVMLVIAPVIWTTGVALLTPLFTEMLARRYGFDLVG--YYP 68
+ A R D + RDP+LV +I +I + RY D +G Y P
Sbjct 5 KKFLAIYRIDWKMLKRDPMLVYSIIITII-------------LLFVVRYFKDRLGVLYPP 51
Query 69 LILTAFLLLTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYRAATVMVVTTIY 128
+ + + + ++ G + F++ ++ + T+ AL+V P+ F YR VT I
Sbjct 52 AAIFSIIFIP--LIFGMIPGFMMANEKEEKTIEALQVIPISSEAFLTYRLLWASAVTGI- 108
Query 129 VVATMSCSGILEPGLVSSLIPIGLVAGLSAVVTL------LLILAVANNKIQGLAMVRAL 182
+G L P ++ +P + L A+ + LLI + ++Q L + +
Sbjct 109 ------LTG-LAPKILDITVPWKGLLALMALFIIEVWTYALLITDFSETRMQALTVSKVA 161
Query 183 GMLIAGLPCLPWF-----ISSNWNLAFGVLPPYWAAKAFW--VASDHGTWWPYLVGGAVY 235
G L+ P + + IS++W+ LP YW + F +D+G +WP L +
Sbjct 162 GWLLILPPAIKFIVIARNISTDWSKFTAFLPTYWIHRLFEGIPFNDYGDFWPGLAVHLAW 221
Query 236 NLAIVWVLFRR 246
+ +V VLF++
Sbjct 222 LVPLV-VLFKK 231
>gi|310829073|ref|YP_003961430.1| hypothetical protein ELI_3508 [Eubacterium limosum KIST612]
gi|308740807|gb|ADO38467.1| hypothetical protein ELI_3508 [Eubacterium limosum KIST612]
Length=235
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/242 (28%), Positives = 120/242 (50%), Gaps = 32/242 (13%)
Query 21 IRGTYRDPLLVMLVIAP----VIWTTGVALLTPLFTEMLARRYGFDLVGYYPLILTAFLL 76
IR D +LVM+ AP + G+ +L PLF R +GF L YY L+
Sbjct 12 IRQIAADRMLVMVCAAPPLCGAFFRFGIPVLEPLFV----RWFGFGLESYYLLLDLLLSG 67
Query 77 LTSIIVAGALAAFLVLDDVDAGTMTALRVTPVPLSVFFGYR---AATVMVVTTIYVVATM 133
+T ++ ++A ++LD+ D+ L VTP+ + + R A V + + V+A
Sbjct 68 ITPYMLC-FVSAMVILDETDSHMSAYLCVTPIGKNGYLVSRLAFPAAVSGLVSFCVLAVF 126
Query 134 SCSGILEPGLVSSLIPIGLVAGLSAVVTLL---LILAVANNKIQGLAMVRALGMLIAGLP 190
S V S+ + ++ SAV+ +L LI+++++NK++G+A+ + G+++ G+
Sbjct 127 RLS-------VDSIFIMASLSLQSAVLGMLAAMLIVSLSSNKVEGMAISKLSGLILFGM- 178
Query 191 CLPWFISSNWNLAFGVLPPYWAAKAFWVASDHGTWWPYLVGGAVYNLAIVW--VLFRRFR 248
+P+ FG++P +W A+ W A G + L G +++W VL+RRF
Sbjct 179 VIPFVFKGGGKYVFGLMPSFWIAQ--W-AITPGFFAILLFSGT----SVLWFFVLWRRFS 231
Query 249 AK 250
K
Sbjct 232 LK 233
Lambda K H
0.329 0.142 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 365242488240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40