BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2687c
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
gi|340627688|ref|YP_004746140.1| putative antibiotic-transport i... 457 6e-127
gi|15609824|ref|NP_217203.1| antibiotic ABC transporter transmem... 457 6e-127
gi|289448342|ref|ZP_06438086.1| antibiotic-transport membrane le... 456 1e-126
gi|253798231|ref|YP_003031232.1| hypothetical protein TBMG_01286... 453 1e-125
gi|118473059|ref|YP_885885.1| antibiotic ABC transporter transme... 355 4e-96
gi|240169711|ref|ZP_04748370.1| antibiotic-transport integral me... 345 3e-93
gi|108799170|ref|YP_639367.1| putative antibiotic-transport inte... 333 1e-89
gi|183982041|ref|YP_001850332.1| antibiotic-transport integral m... 319 2e-85
gi|317507609|ref|ZP_07965322.1| antibiotic transport system perm... 319 2e-85
gi|120401790|ref|YP_951619.1| putative antibiotic-transport inte... 314 6e-84
gi|296171906|ref|ZP_06852970.1| antibiotic-transport ABC superfa... 311 4e-83
gi|118618651|ref|YP_906983.1| antibiotic-transport integral memb... 295 4e-78
gi|169628947|ref|YP_001702596.1| antibiotic ABC transporter memb... 281 6e-74
gi|291302140|ref|YP_003513418.1| hypothetical protein Snas_4682 ... 167 1e-39
gi|282164304|ref|YP_003356689.1| putative ABC transporter [Metha... 138 6e-31
gi|147920489|ref|YP_685718.1| hypothetical protein RCIX1070 [unc... 137 9e-31
gi|156740972|ref|YP_001431101.1| ABC-2 type transporter [Roseifl... 93.2 3e-17
gi|148657930|ref|YP_001278135.1| ABC-2 type transporter [Roseifl... 89.7 3e-16
gi|163848262|ref|YP_001636306.1| ABC-2 type transporter [Chlorof... 84.0 2e-14
gi|322367870|ref|ZP_08042440.1| putative ABC transporter [Halada... 81.3 1e-13
gi|18976950|ref|NP_578307.1| hypothetical protein PF0578 [Pyroco... 73.6 2e-11
gi|242398581|ref|YP_002994005.1| hypothetical protein TSIB_0591 ... 72.4 5e-11
gi|57640628|ref|YP_183106.1| hypothetical protein TK0693 [Thermo... 69.7 4e-10
gi|212223980|ref|YP_002307216.1| membrane protein, conserved [Th... 68.6 7e-10
gi|344327781|gb|EGW39194.1| ABC-2 type transporter family protei... 68.2 1e-09
gi|298388108|ref|ZP_06997653.1| ABC-2 type transporter superfami... 64.7 1e-08
gi|309776795|ref|ZP_07671769.1| conserved hypothetical protein [... 63.2 3e-08
gi|335431149|ref|ZP_08558032.1| ABC transporter permease [Halopl... 62.8 4e-08
gi|225174796|ref|ZP_03728794.1| ABC-type transport system, perme... 62.0 8e-08
gi|240102889|ref|YP_002959198.1| hypothetical protein TGAM_0832 ... 60.5 2e-07
gi|319934837|ref|ZP_08009282.1| hypothetical protein HMPREF9488_... 60.1 3e-07
gi|302669267|ref|YP_003832417.1| ABC transporter permease [Butyr... 59.7 3e-07
gi|341581242|ref|YP_004761734.1| hypothetical protein GQS_00770 ... 58.9 6e-07
gi|297560640|ref|YP_003679614.1| hypothetical protein Ndas_1679 ... 58.2 1e-06
gi|150389288|ref|YP_001319337.1| ABC-2 type transporter [Alkalip... 56.6 3e-06
gi|325970505|ref|YP_004246696.1| ABC transporter permease [Spiro... 56.2 4e-06
gi|225018217|ref|ZP_03707409.1| hypothetical protein CLOSTMETH_0... 55.8 5e-06
gi|254977267|ref|ZP_05273739.1| putative ABC transporter, permea... 55.5 7e-06
gi|255306173|ref|ZP_05350345.1| putative ABC transporter, permea... 55.1 8e-06
gi|310829074|ref|YP_003961431.1| hypothetical protein ELI_3509 [... 55.1 8e-06
gi|345022747|ref|ZP_08786360.1| ABC transporter permease [Ornith... 54.7 1e-05
gi|266623835|ref|ZP_06116770.1| conserved hypothetical protein [... 53.9 2e-05
gi|89893659|ref|YP_517146.1| hypothetical protein DSY0913 [Desul... 53.5 3e-05
gi|255306779|ref|ZP_05350950.1| putative ABC transporter, permea... 53.5 3e-05
gi|254975390|ref|ZP_05271862.1| putative ABC transporter, permea... 53.5 3e-05
gi|255100889|ref|ZP_05329866.1| putative ABC transporter, permea... 52.8 4e-05
gi|126699361|ref|YP_001088258.1| ABC transporter permease [Clost... 52.8 4e-05
gi|219668040|ref|YP_002458475.1| ABC transporter [Desulfitobacte... 52.4 5e-05
gi|255655773|ref|ZP_05401182.1| putative ABC transporter, permea... 52.4 5e-05
gi|332298445|ref|YP_004440367.1| ABC transporter permease [Trepo... 51.6 9e-05
>gi|340627688|ref|YP_004746140.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium canettii CIPT
140010059]
gi|340005878|emb|CCC45044.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium canettii CIPT
140010059]
Length=237
Score = 457 bits (1176), Expect = 6e-127, Method: Compositional matrix adjust.
Identities = 236/237 (99%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIA+IGF
Sbjct 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAVIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL
Sbjct 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL
Sbjct 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
>gi|15609824|ref|NP_217203.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
tuberculosis H37Rv]
gi|15842225|ref|NP_337262.1| hypothetical protein MT2761 [Mycobacterium tuberculosis CDC1551]
gi|31793859|ref|NP_856352.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
bovis AF2122/97]
68 more sequence titles
Length=237
Score = 457 bits (1176), Expect = 6e-127, Method: Compositional matrix adjust.
Identities = 237/237 (100%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF
Sbjct 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL
Sbjct 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL
Sbjct 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
>gi|289448342|ref|ZP_06438086.1| antibiotic-transport membrane leucine and valine rich protein
ABC transporter [Mycobacterium tuberculosis CPHL_A]
gi|289421300|gb|EFD18501.1| antibiotic-transport membrane leucine and valine rich protein
ABC transporter [Mycobacterium tuberculosis CPHL_A]
Length=237
Score = 456 bits (1174), Expect = 1e-126, Method: Compositional matrix adjust.
Identities = 236/237 (99%), Positives = 237/237 (100%), Gaps = 0/237 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF
Sbjct 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVV+ATIVHGLGYHLL
Sbjct 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVLATIVHGLGYHLL 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL
Sbjct 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
>gi|253798231|ref|YP_003031232.1| hypothetical protein TBMG_01286 [Mycobacterium tuberculosis KZN
1435]
gi|289553527|ref|ZP_06442737.1| antibiotic-transport membrane leucine and valine rich protein
ABC transporter [Mycobacterium tuberculosis KZN 605]
gi|297635295|ref|ZP_06953075.1| hypothetical protein MtubK4_14285 [Mycobacterium tuberculosis
KZN 4207]
6 more sequence titles
Length=237
Score = 453 bits (1165), Expect = 1e-125, Method: Compositional matrix adjust.
Identities = 236/237 (99%), Positives = 236/237 (99%), Gaps = 0/237 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF
Sbjct 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL
Sbjct 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLC AAKALFGRYVVQRSGVL
Sbjct 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCWAAKALFGRYVVQRSGVL 237
>gi|118473059|ref|YP_885885.1| antibiotic ABC transporter transmembrane protein [Mycobacterium
smegmatis str. MC2 155]
gi|118174346|gb|ABK75242.1| probable antibiotic-transport integral membrane leucine and valine
rich protein abc transporter [Mycobacterium smegmatis
str. MC2 155]
Length=237
Score = 355 bits (910), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 178/237 (76%), Positives = 202/237 (86%), Gaps = 0/237 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRL ALRLELT+Q RQKFLHAAVFSGLIWLAVLLP+P S+RPV EPYVL+GD+AIIGF
Sbjct 1 MTRLWAALRLELTVQTRQKFLHAAVFSGLIWLAVLLPLPHSVRPVVEPYVLIGDVAIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+GG VFFEKQERT+GAI+STPLRF EYL AKLTVL AISLFVAVVVATI HGL YH
Sbjct 61 FFIGGAVFFEKQERTLGAIISTPLRFAEYLTAKLTVLAAISLFVAVVVATITHGLTYHAA 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
L+ G++LGTLLML+VGF SSLPFASV+DW +A VIPLA+ML PP++HYSG+W +PVLY
Sbjct 121 ALIGGVLLGTLLMLVVGFISSLPFASVSDWAMATVIPLAVMLVPPILHYSGVWTHPVLYA 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL 237
P QGP+LLLGAAFDQ L WQ+GYAV YP+ C AGL AA A+F YVV+RSGVL
Sbjct 181 APMQGPMLLLGAAFDQSVLNAWQIGYAVAYPLACLAGLWWAAHAMFDHYVVERSGVL 237
>gi|240169711|ref|ZP_04748370.1| antibiotic-transport integral membrane leucine and valine rich
protein ABC transporter [Mycobacterium kansasii ATCC 12478]
Length=235
Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 177/233 (76%), Positives = 201/233 (87%), Gaps = 1/233 (0%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
RL A+RLE+TLQVRQ+FLHAA+FSGLIWLAVLLPMP LRPVAEPYVL GDI+IIGFFF
Sbjct 2 RLAQAVRLEVTLQVRQRFLHAAIFSGLIWLAVLLPMPDHLRPVAEPYVLSGDISIIGFFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
V GTVFFEKQERT+ A+V++PLRF EYLAAKL VLL ISL VAVVVATIVHG YH P+
Sbjct 62 VAGTVFFEKQERTLSAVVASPLRFGEYLAAKLIVLLMISLGVAVVVATIVHGFSYHPAPM 121
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP 182
+ G+ LGTLLMLLVGF SSLPFAS++DWFL A IPLA+M PV++YSG+WPNPVLYL+P
Sbjct 122 IVGVGLGTLLMLLVGFISSLPFASISDWFLVATIPLAVM-NLPVLYYSGVWPNPVLYLLP 180
Query 183 TQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
TQGPLLLLGAAFDQ+ LAPWQ+GYAVVYP C A L AA A+FGRYVV ++G
Sbjct 181 TQGPLLLLGAAFDQLRLAPWQIGYAVVYPAACVAALYWAADAMFGRYVVAQAG 233
>gi|108799170|ref|YP_639367.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium sp. MCS]
gi|119868285|ref|YP_938237.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium sp. KMS]
gi|126434778|ref|YP_001070469.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium sp. JLS]
gi|108769589|gb|ABG08311.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium sp. MCS]
gi|119694374|gb|ABL91447.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium sp. KMS]
gi|126234578|gb|ABN97978.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium sp. JLS]
Length=235
Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/235 (72%), Positives = 201/235 (86%), Gaps = 1/235 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRL+ LRLELTLQ RQ+FLHAAVFSGLIWLAVLLP+ LR AEPYVLVGDI+IIGF
Sbjct 1 MTRLLSVLRLELTLQNRQRFLHAAVFSGLIWLAVLLPLSHGLRAAAEPYVLVGDISIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+GG+VFFEKQERT+GA++STPLRF EYLAAK+TVL ++SL VAV V TI HG+ Y +
Sbjct 61 FFIGGSVFFEKQERTLGAMISTPLRFGEYLAAKVTVLCSVSLLVAVTVVTIAHGVAYRPV 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
P+VAG+VLGTLLMLLVGF +SLPFASV+DWFLA +P+A+M PV+HYSG+WP+P L+L
Sbjct 121 PMVAGVVLGTLLMLLVGFITSLPFASVSDWFLAGTVPIAVM-NLPVLHYSGVWPHPALHL 179
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
+PTQGPL+LLGAAFDQ+ L PWQV YA+ YP+VC GL AAKA+F R+VV+ +G
Sbjct 180 VPTQGPLMLLGAAFDQLHLQPWQVVYAIGYPLVCLIGLYLAAKAMFVRHVVRSAG 234
>gi|183982041|ref|YP_001850332.1| antibiotic-transport integral membrane leucine and valine rich
protein ABC transporter [Mycobacterium marinum M]
gi|183175367|gb|ACC40477.1| antibiotic-transport integral membrane leucine and valine rich
protein ABC transporter [Mycobacterium marinum M]
Length=236
Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/235 (73%), Positives = 195/235 (83%), Gaps = 1/235 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M+RL ALRLELTLQ RQ+FLHAAVFSGLIWLAVLLPMP LR VAEPYVL GDI IIGF
Sbjct 1 MSRLSTALRLELTLQNRQRFLHAAVFSGLIWLAVLLPMPADLRSVAEPYVLSGDITIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FFV GTVFFEKQERT+ A+++TPLRF EYLAAKL VLL +S+ VAVVVATI HGL Y
Sbjct 61 FFVAGTVFFEKQERTLSAVIATPLRFGEYLAAKLAVLLMVSVGVAVVVATIAHGLSYSAA 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
P++ + LGTLLMLLVGF SSLPFAS++DWFL A IPLA+M PV++YSG+WP+PVLY
Sbjct 121 PMIVAVALGTLLMLLVGFISSLPFASISDWFLVATIPLAVM-NLPVLYYSGVWPHPVLYA 179
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
IPTQGPLLLLGAAF Q++LAPWQ+GYA++YP VC L R A+A F RYVV +G
Sbjct 180 IPTQGPLLLLGAAFGQLTLAPWQIGYALLYPSVCVGVLYRVAEASFARYVVAAAG 234
>gi|317507609|ref|ZP_07965322.1| antibiotic transport system permease [Segniliparus rugosus ATCC
BAA-974]
gi|316254086|gb|EFV13443.1| antibiotic transport system permease [Segniliparus rugosus ATCC
BAA-974]
Length=236
Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/235 (72%), Positives = 199/235 (85%), Gaps = 0/235 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRLV +RLELTLQ RQKFL A +FSGLIWLAVLLPMP LRP+AEPYVL+GD+AIIGF
Sbjct 1 MTRLVSVVRLELTLQARQKFLLAGIFSGLIWLAVLLPMPAVLRPIAEPYVLIGDVAIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+GG+VFFEKQERT+GA++ TPLRF EYLAAKL LL+ISL VA+ VATIVHG GY L+
Sbjct 61 FFIGGSVFFEKQERTLGALLCTPLRFAEYLAAKLATLLSISLGVAITVATIVHGTGYRLV 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
P+ AG+VLGTLLMLL GF ++LPF+SVTDWF+A+VIPLA ML PP+VHYSGLWP+PVL L
Sbjct 121 PMTAGVVLGTLLMLLTGFITALPFSSVTDWFMASVIPLACMLIPPIVHYSGLWPHPVLCL 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
+PT+GPL+LLGAAF Q L W+ YA+ YP+ C AGLC A+ LF R+VV+R G
Sbjct 181 VPTEGPLMLLGAAFGQRDLTVWEWAYALAYPLACVAGLCVLAQRLFVRHVVERPG 235
>gi|120401790|ref|YP_951619.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium vanbaalenii
PYR-1]
gi|119954608|gb|ABM11613.1| putative antibiotic-transport integral membrane leucine and valine
rich protein ABC transporter [Mycobacterium vanbaalenii
PYR-1]
Length=236
Score = 314 bits (805), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 156/236 (67%), Positives = 191/236 (81%), Gaps = 1/236 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M R V ALRLE TLQVRQ+F+HAAV SG++WL VLLPMP LR + EPYVL+GDI I+GF
Sbjct 1 MKRWVSALRLEATLQVRQRFVHAAVISGMLWLVVLLPMPQHLRSIVEPYVLIGDITIVGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+GG VFFEKQERT+GA++ +PLRF EYL+ K+ VL +SLF+AVVV HG +
Sbjct 61 FFIGGAVFFEKQERTLGAVICSPLRFIEYLSVKILVLTGVSLFIAVVVTLATHGTDFRPG 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
LVAG+VLGTL+MLLVGF S+LPF SV+DWFL+ V+PL I L+ PV++ G+W NP YL
Sbjct 121 FLVAGVVLGTLVMLLVGFISALPFDSVSDWFLSTVVPLLI-LSLPVMYMLGVWTNPAFYL 179
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGV 236
+PTQGPLL+ A FDQVSLAPWQVGYAV+YP++CAAGL R A+ +FGRYVV+RSGV
Sbjct 180 VPTQGPLLMFLAVFDQVSLAPWQVGYAVLYPLICAAGLYRLARVMFGRYVVERSGV 235
>gi|296171906|ref|ZP_06852970.1| antibiotic-transport ABC superfamily ATP binding cassette transporter,
membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295893905|gb|EFG73676.1| antibiotic-transport ABC superfamily ATP binding cassette transporter,
membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=236
Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/235 (69%), Positives = 191/235 (82%), Gaps = 1/235 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
MTRLV +RLELTLQVRQ+FLHAAVFSGLIWLAVLLPM LRPV EPYVL GD IIGF
Sbjct 1 MTRLVWMMRLELTLQVRQRFLHAAVFSGLIWLAVLLPMSAGLRPVVEPYVLAGDTTIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+ GTVFFE+QERT+ AI+STPLRF EYL A L VLL++S+ VA VV +I HG YH +
Sbjct 61 FFIAGTVFFERQERTLSAIISTPLRFTEYLTATLAVLLSVSVCVAAVVISIAHGGAYHPV 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
P++ G+ LGTL+MLLVGF++SLPFAS++DWF+ A IPLA+M PV++ SG+WPNPVLYL
Sbjct 121 PMLLGVALGTLVMLLVGFTTSLPFASISDWFITATIPLAVM-NLPVLYLSGVWPNPVLYL 179
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
+PTQGPLLLLG AF+Q+ L WQ GYAV YP + A LC AAKALF RYVV + G
Sbjct 180 LPTQGPLLLLGCAFNQIRLTAWQAGYAVAYPALSIAALCWAAKALFARYVVAKPG 234
>gi|118618651|ref|YP_906983.1| antibiotic-transport integral membrane leucine and valine rich
protein ABC transporter [Mycobacterium ulcerans Agy99]
gi|118570761|gb|ABL05512.1| antibiotic-transport integral membrane leucine and valine rich
protein ABC transporter [Mycobacterium ulcerans Agy99]
Length=221
Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/222 (72%), Positives = 182/222 (82%), Gaps = 5/222 (2%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M+RL ALRLELTLQ RQ+FLHAAVFSGLIWLAVLLPMP LR VAEPYVL GDI IIGF
Sbjct 1 MSRLSTALRLELTLQNRQRFLHAAVFSGLIWLAVLLPMPADLRSVAEPYVLSGDITIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF GTVFFEKQERT+ A+++TPLRF EYLAAKL VLL +S+ VAVVVATI HG Y
Sbjct 61 FFAAGTVFFEKQERTLSAVIATPLRFGEYLAAKLAVLLMVSVGVAVVVATIAHGFSYSAA 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
P++ + LGTLLMLLVGF SSLPFAS++DWFL A IPLA+M PV++YSG+WP+PVLY
Sbjct 121 PMIVAVALGTLLMLLVGFISSLPFASISDWFLVATIPLAVM-NLPVLYYSGVWPHPVLYA 179
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAA 222
IPTQGPLLLLGAAF Q++LAPWQ+GYA + + G+CR A
Sbjct 180 IPTQGPLLLLGAAFGQLTLAPWQIGYA----LFVSVGVCRGA 217
>gi|169628947|ref|YP_001702596.1| antibiotic ABC transporter membrane protein [Mycobacterium abscessus
ATCC 19977]
gi|169240914|emb|CAM61942.1| Probable ABC transporter antibiotic-transport integral membrane
protein [Mycobacterium abscessus]
Length=237
Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/235 (68%), Positives = 184/235 (79%), Gaps = 1/235 (0%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M R ALRLELTLQVRQKFLHAAVFSG IWLAVLLPM SLR AEPY+L+GDI+IIGF
Sbjct 1 MNRFSQALRLELTLQVRQKFLHAAVFSGFIWLAVLLPMSRSLRSAAEPYILIGDISIIGF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+ GTVFFEKQE T+GA++ TPLRF EYL+AKL VLLAISL V V V+T+ +G Y L
Sbjct 61 FFIAGTVFFEKQEHTLGAVICTPLRFREYLSAKLVVLLAISLVVGVGVSTVANGFHYRPL 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL 180
PL+ G+VLG+LLMLL GF +SLPFAS++DWFLAA IPLAI L P++ +SGLW P LY+
Sbjct 121 PLLVGVVLGSLLMLLSGFLTSLPFASISDWFLAATIPLAI-LTLPILGFSGLWNTPGLYV 179
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
+PT GPLLL GAAF QV L PW YAV YP++ AGL K FG+YVV +SG
Sbjct 180 VPTYGPLLLFGAAFGQVELTPWLAVYAVGYPVLGIAGLSWLCKIAFGKYVVAQSG 234
>gi|291302140|ref|YP_003513418.1| hypothetical protein Snas_4682 [Stackebrandtia nassauensis DSM
44728]
gi|290571360|gb|ADD44325.1| hypothetical protein Snas_4682 [Stackebrandtia nassauensis DSM
44728]
Length=240
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/229 (44%), Positives = 148/229 (65%), Gaps = 1/229 (0%)
Query 7 ALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGT 66
A RL+L LQ R F++AA FS ++W A+++ +P L+ A PY++ GD+ I+GFFF+ G
Sbjct 11 AFRLDLRLQWRYGFVYAAAFSAVLWDAIVIILPEPLQGPAMPYLIFGDLGIVGFFFLAGA 70
Query 67 VFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGI 126
VFFE+ ERT+ A+V+TP+RF +YLA+KLT L +SL + +++ GL + + L+ G
Sbjct 71 VFFERGERTLDAVVTTPMRFGDYLASKLTTLSLLSLVLTLLITVSGVGLDFDPVTLLLGT 130
Query 127 VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIPTQGP 186
VL +L+ LL F S+ PF S++DW + + +A+ L+ P+ YSGLW +P LYL PTQG
Sbjct 131 VLCSLVCLLASFISATPFTSISDWIIPSTAVIAV-LSLPMAFYSGLWESPALYLAPTQGS 189
Query 187 LLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
LLLLG +F Q W YA+ ++ L A+ F R+VV+R G
Sbjct 190 LLLLGESFGQSRFEVWDYVYAIGSSLLWIVLLTLWARRAFYRHVVKREG 238
>gi|282164304|ref|YP_003356689.1| putative ABC transporter [Methanocella paludicola SANAE]
gi|282156618|dbj|BAI61706.1| putative ABC transporter [Methanocella paludicola SANAE]
Length=235
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/233 (34%), Positives = 132/233 (57%), Gaps = 3/233 (1%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
R V RL+ LQ RQ F +A++ + I + +L + V P L+ ++ + F+F
Sbjct 4 RYVSTARLDFRLQARQGFYYASILTTAIMILILTQVRVKDLGFFIPVFLINNMVLNTFYF 63
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
+ G V FEK E T+ A+ TPL +EYL +K L A+ L + + +G G+ +LP+
Sbjct 64 MAGMVLFEKAEGTLKALSVTPLSAFEYLCSKAATLTALVLVENFAIILLTYGPGFDMLPV 123
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP 182
+AG VL +++ +L GF + + S++++ + +V+ I+L P+V Y G++ NPV Y+ P
Sbjct 124 LAGTVLMSVIYVLAGFIAVAKYDSISEFIMPSVV-YVILLQLPLVDYLGIFRNPVFYIFP 182
Query 183 TQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
Q PL+L+G+AF + L WQV Y + Y + C A+ F +YV+Q G
Sbjct 183 MQAPLVLMGSAFVHMEL--WQVAYGIAYSLACVVLAYAWARRSFKKYVIQGEG 233
>gi|147920489|ref|YP_685718.1| hypothetical protein RCIX1070 [uncultured methanogenic archaeon
RC-I]
gi|110621114|emb|CAJ36392.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length=235
Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/236 (35%), Positives = 140/236 (60%), Gaps = 5/236 (2%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
+ RLVP L ++ QVR F+ A++F+ ++++A+L PV P + G++ I F
Sbjct 2 INRLVPTLLVDFRQQVRYGFIVASLFTMIVFIAMLSQFSQYGSPVFVPLFVFGNLMIGTF 61
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
FF+GG V FEK E + A++ +PLR EYL +K+ L A++ + + + G GY++L
Sbjct 62 FFIGGMVLFEKGEGVLQALIVSPLRVEEYLGSKVLTLTALAFIENMAIVLAIFGTGYNVL 121
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFL-AAVIPLAIMLAPPVVHYSGLWPNPVLY 179
L AG +L ++ +L+GF F S++++ + AA + +A+ML P+V Y ++ P++Y
Sbjct 122 LLAAGTILAAVIYVLLGFVMVSRFKSISEYLMPAAFVIVALML--PLVDYLQIFETPLVY 179
Query 180 LIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG 235
L P Q PLL++ AAF V + WQ+ Y V+Y ++ A +K F R+++ R G
Sbjct 180 LHPMQAPLLVMKAAF--VPVESWQLAYGVLYSLIVIAVAFVLSKRAFDRHIINRKG 233
>gi|156740972|ref|YP_001431101.1| ABC-2 type transporter [Roseiflexus castenholzii DSM 13941]
gi|156232300|gb|ABU57083.1| ABC-2 type transporter [Roseiflexus castenholzii DSM 13941]
Length=236
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/237 (33%), Positives = 118/237 (50%), Gaps = 5/237 (2%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M R + L ++ Q R F +VF + VL + P +L+ ++ I F
Sbjct 1 MKRFLITLYWDIVRQYRNGFYFVSVFVAALTALVLRQFDAVDWSIWWPPILLENLVINAF 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
+F+ G V EK E T+ A + TPLR +EYL AK+ L A+S ++ + IV G ++ L
Sbjct 61 YFMAGIVLLEKGEGTLEAQIVTPLRDYEYLLAKVISLFALSALESLALILIVSGPAFNWL 120
Query 121 PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFL-AAVIPLAIMLAPPVVHYSGLWPNPVLY 179
++ GI + GF + S+T++ L +A+ L L P++ Y LW + L+
Sbjct 121 WMLLGIAGFVAMYAFYGFFVVSRYDSITEFLLPSALWTLGFSL--PLLAYFDLWQHWSLF 178
Query 180 LIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGV 236
L P Q PLLL+ AA+ L WQ+ YAVVY V + F R+V+ + GV
Sbjct 179 LHPLQAPLLLIHAAY--APLPAWQLAYAVVYTGVWVGIGYVIGQRAFYRFVITKEGV 233
>gi|148657930|ref|YP_001278135.1| ABC-2 type transporter [Roseiflexus sp. RS-1]
gi|148570040|gb|ABQ92185.1| ABC-2 type transporter [Roseiflexus sp. RS-1]
Length=236
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/243 (31%), Positives = 116/243 (48%), Gaps = 17/243 (6%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAE-------PYVLVG 53
M R L ++ Q R F + F V++ M + LR + E P +L+
Sbjct 1 MKRFAHTLYWDMVRQYRNGFYLVSAF-------VVVLMALVLRQIGEVDWSIWWPPLLLE 53
Query 54 DIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVH 113
++ I F+F+ G V EK E + A + TPLR EYL AK+ L +S+ ++ + IV
Sbjct 54 NLVINAFYFMAGIVLLEKSEGVLEAQIVTPLRDQEYLLAKVVSLFVLSVIESLALILIVS 113
Query 114 GLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLW 173
G ++ ++ GI L GF + S+T+ FL + + P++ Y LW
Sbjct 114 GPAFNWFWMLLGIAGFVALYAFYGFFVVSRYDSITE-FLMPSALWTLGFSLPLLSYFDLW 172
Query 174 PNPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQR 233
+ LYL P Q PLLL+ AA+ L WQ+ YA++Y + A + F R+V+ +
Sbjct 173 RHWSLYLHPLQAPLLLIHAAY--TPLPAWQMAYAILYTALWVGIGAIAGQRAFYRFVIAK 230
Query 234 SGV 236
GV
Sbjct 231 EGV 233
>gi|163848262|ref|YP_001636306.1| ABC-2 type transporter [Chloroflexus aurantiacus J-10-fl]
gi|222526172|ref|YP_002570643.1| ABC-2 type transporter [Chloroflexus sp. Y-400-fl]
gi|163669551|gb|ABY35917.1| ABC-2 type transporter [Chloroflexus aurantiacus J-10-fl]
gi|222450051|gb|ACM54317.1| ABC-2 type transporter [Chloroflexus sp. Y-400-fl]
Length=244
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/188 (31%), Positives = 100/188 (54%), Gaps = 3/188 (1%)
Query 48 PYVLVGDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVV 107
P +L+ + + FFF+ G V EK E + A V TPLR WEYL AK+ L +S ++
Sbjct 48 PAILLETLVVNSFFFMAGLVLLEKGEGVLEAQVVTPLRDWEYLLAKIISLFVLSASESLA 107
Query 108 VATIVHGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVV 167
+ +V G ++ L ++ GI + L GF + S++++ L + + + + P++
Sbjct 108 LILLVSGPAFNWLWMLIGIGCFVAMYTLYGFFVVARYDSISEFILPSAL-WTMGFSIPLL 166
Query 168 HYSGLWPNPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFG 227
Y LW + ++YL P Q PL+L+ AA+ L WQ+ Y ++Y +V + + F
Sbjct 167 PYFDLWQHWLIYLHPLQAPLILVEAAYK--PLPAWQLWYGILYSLVWISIGWVVGRHTFY 224
Query 228 RYVVQRSG 235
R+VV + G
Sbjct 225 RFVVTKEG 232
>gi|322367870|ref|ZP_08042440.1| putative ABC transporter [Haladaptatus paucihalophilus DX253]
gi|320552577|gb|EFW94221.1| putative ABC transporter [Haladaptatus paucihalophilus DX253]
Length=515
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/181 (32%), Positives = 99/181 (55%), Gaps = 3/181 (1%)
Query 54 DIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVH 113
D A++GF+F+ V +EK E + A+V +PL YL +K L +++ + VA
Sbjct 72 DPAVLGFYFIAVLVLYEKTEGVLQALVVSPLDSTGYLFSKAASLSTLAVSASFAVAVSEF 131
Query 114 GLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLW 173
GL + L+ G++L +LL++ +GF + F S+ ++FL+A + I+ + P++ Y GL+
Sbjct 132 GLSLRIAVLLFGVLLSSLLIVFLGFVAVSRFDSINEFFLSAAVWGTILFS-PILGYLGLF 190
Query 174 PNPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQR 233
P YL+P Q L+ + A VSL W+V YA Y +V A+ F R ++++
Sbjct 191 NTPAFYLLPVQPLLITIEAGVRSVSL--WKVIYAFAYLVVGTTLTFLWARRSFDRDILRQ 248
Query 234 S 234
Sbjct 249 D 249
>gi|18976950|ref|NP_578307.1| hypothetical protein PF0578 [Pyrococcus furiosus DSM 3638]
gi|18892572|gb|AAL80702.1| hypothetical protein PF0578 [Pyrococcus furiosus DSM 3638]
Length=233
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/198 (30%), Positives = 101/198 (52%), Gaps = 12/198 (6%)
Query 8 LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV 67
+++ LT+ R + G+ + +L+ P + P L+ + ++GF FVG +
Sbjct 6 IKVNLTIGFRSYVYPMYILIGVAYGLMLMAFPERYHSIVVPIFLLFEPGLVGFMFVGTEI 65
Query 68 FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV 123
F EK++ TIGA+ TP+ + +Y+ AKL L +S+ + + I + GL Y +V
Sbjct 66 FAEKKDGTIGALAVTPIEWRDYIIAKLIPLSLLSIVGGIAIMAIGTRSLSGLPY----VV 121
Query 124 AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP---VLYL 180
G+ L +++ L+G S + S+ D+F+ + L + L P HY G +P VLYL
Sbjct 122 VGVFLCSIVYTLLGIGISAKYYSLDDYFIPLLGVLIVSLL-PFAHYHGYLTHPIWKVLYL 180
Query 181 IPTQGPLLLLGAAFDQVS 198
IP+ L A F ++S
Sbjct 181 IPSYPALYFFKAPFVEIS 198
>gi|242398581|ref|YP_002994005.1| hypothetical protein TSIB_0591 [Thermococcus sibiricus MM 739]
gi|242264974|gb|ACS89656.1| hypothetical protein TSIB_0591 [Thermococcus sibiricus MM 739]
Length=233
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/232 (29%), Positives = 114/232 (50%), Gaps = 14/232 (6%)
Query 8 LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV 67
+R L + VR + GL + +L+ P P P L+ + ++GF FVG +
Sbjct 6 IRTNLVIGVRSYVYPVYILIGLAYGLMLMVFPEQYLPTMVPIFLLFEPGLVGFMFVGTEI 65
Query 68 FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV 123
F EK++ IGA+ TP+ + Y+ AK +L +S+ A+++ I ++GL Y ++
Sbjct 66 FAEKKDGAIGALAVTPIEWRSYILAKTLLLSVLSIIGAILIMAIGTRSLNGLPY----VI 121
Query 124 AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPN---PVLYL 180
G+ L +++ L+G S + + D+F+ + L I L P VHY G + VLY
Sbjct 122 VGVFLVSIVYTLLGIGISAKYHDLDDYFVPIMGVLVISLL-PFVHYHGYLTSEIWKVLYA 180
Query 181 IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQ 232
IP+ L A F+++S + ++ V IV A A+ F +Y V+
Sbjct 181 IPSYPGLYFFKAPFEEISRD--AMTWSAVALIVWAGIAYYIARIRFYKYAVE 230
>gi|57640628|ref|YP_183106.1| hypothetical protein TK0693 [Thermococcus kodakarensis KOD1]
gi|57158952|dbj|BAD84882.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length=233
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/178 (30%), Positives = 92/178 (52%), Gaps = 12/178 (6%)
Query 28 GLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFW 87
GL + +LL P P P L+ + ++GF FVG +F EK++ I A+ TP+ +
Sbjct 26 GLAYGLMLLAFPEQYLPTMVPIFLLFEPGLVGFMFVGTEIFAEKKDGAISALAVTPIEWR 85
Query 88 EYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLVAGIVLGTLLMLLVGFSSSLP 143
Y+ AK ++ +S+ A+++ + + GL Y ++AG+ L + + L+G + S
Sbjct 86 SYILAKTIIMSVLSVIGAILIMAVGTRSLDGLPY----VIAGVFLCSAVYTLLGIAISAK 141
Query 144 FASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP---VLYLIPTQGPLLLLGAAFDQVS 198
+ + D+F+ + L + L P HY G +P VLYL+P+ L A F +VS
Sbjct 142 YRDLDDYFIPIMAVLVVSLL-PFAHYHGYLTHPLWKVLYLVPSYPALYFFKAPFVEVS 198
>gi|212223980|ref|YP_002307216.1| membrane protein, conserved [Thermococcus onnurineus NA1]
gi|212008937|gb|ACJ16319.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
NA1]
Length=234
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/232 (26%), Positives = 112/232 (49%), Gaps = 14/232 (6%)
Query 8 LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV 67
+R+E + +R + L + VL P P + D ++GF F+G ++
Sbjct 7 MRVEFKVGMRNYTYPIYFLAALAYGVVLGAFPEEYVSTMAPLFIFIDPGLLGFMFIGTSI 66
Query 68 FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIV 127
F +K++ TIGA+ TP+ + +Y +K ++ ++L A+V+ + G + ++ G +
Sbjct 67 FSDKKDGTIGALSVTPMEWRDYYLSKTIIMALLALIGALVIVVVGAGFNVQIAYVLIGTL 126
Query 128 LGTLLMLLVGFSSSLPFASVTDWF--LAAVIPLAIMLAPPVVHYSGLWPNP---VLYLIP 182
L +++ L+G + + + + D+F L AV+ L+ + P Y GL P VLY+IP
Sbjct 127 LVSVVYTLLGIAIAAKYRDLDDYFVPLLAVMVLSFL---PFAAYHGLISGPWGKVLYIIP 183
Query 183 TQGPLLLLGAAFDQVSLAP--WQVGYAVVYPIVCAAGLCRAAKALFGRYVVQ 232
+ L A F++++ W V++ IV AK F +Y V+
Sbjct 184 SYPGLYFFHAGFEEIARETLMWSGIALVIWGIVA----YNLAKIRFYKYAVE 231
>gi|344327781|gb|EGW39194.1| ABC-2 type transporter family protein [Desulfosporosinus sp.
OT]
Length=226
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/154 (29%), Positives = 79/154 (52%), Gaps = 1/154 (0%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSL-RPVAEPYVLVGDIAIIGFF 61
RL+ AL+ +L Q + F ++++ +L +P L + ++ D A++GFF
Sbjct 2 RLIAALKSDLKFQFKHGFYTVYTLIAVLYIIILQKIPGGLFKDYTLALIVFSDPAMLGFF 61
Query 62 FVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLP 121
F+GG V EKQ+ + + TPL EY+ +K+ L +S+ +VV+A + H G + L
Sbjct 62 FIGGIVMLEKQQGILDYLAVTPLSPQEYITSKVVTLALLSVSASVVIALMTHLSGVNWLL 121
Query 122 LVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAV 155
L I+ ++ L GF +L ++ +F V
Sbjct 122 LTISILALSVFFTLYGFMVTLGCRTINQYFFKTV 155
>gi|298388108|ref|ZP_06997653.1| ABC-2 type transporter superfamily [Bacteroides sp. 1_1_14]
gi|298259138|gb|EFI02017.1| ABC-2 type transporter superfamily [Bacteroides sp. 1_1_14]
Length=220
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 105/204 (52%), Gaps = 6/204 (2%)
Query 15 QVRQKFLHA--AVFS--GLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
+RQ++ + A+++ ++++AVL +P+ + + ++ D +IG F+G + FE
Sbjct 10 DIRQQYKYGFYALYTLFTMVYIAVLRILPMPWKELCTTTLIFSDPVLIGLMFMGAIILFE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIVLGT 130
K E+ + A+ +P+ Y+ +K+ + ISL V++A + G+ + + L GI+LG+
Sbjct 70 KSEKVMQALAVSPISVHAYILSKVISIGLISLLSGVLIA-LFSGMEHSYIHLTVGIMLGS 128
Query 131 LLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIPTQGPLLLL 190
L LVG S S +++ ++ L + L I +AP V+ G + + + L P+ + L+
Sbjct 129 ALFTLVGISLSAFISTMNNFMLIMISTLIISVAPISVYTMG-YKSGAMLLHPSISFIELM 187
Query 191 GAAFDQVSLAPWQVGYAVVYPIVC 214
+SL + +Y C
Sbjct 188 SGNISVMSLMVISIWCIAMYIFSC 211
>gi|309776795|ref|ZP_07671769.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308915543|gb|EFP61309.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
Length=225
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/182 (27%), Positives = 88/182 (49%), Gaps = 4/182 (2%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
R+ ++ ++ LQ+R F + ++ +L +P + + + D A +G FF
Sbjct 2 RISALIQEDIRLQLRHGFYALYTILTIFYILLLSAVPAAWNHTVAAFAIFFDPATMGLFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
+G + FE+ +R A+ +P+ EY+ KL ISL VA V+A H LLP+
Sbjct 62 MGAMMLFERNQRIHQALAVSPVSPNEYICGKLASFGLISLLVAAVLALFSHS---SLLPV 118
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP 182
+AG +L + + L+G ++ S+ + L +V PL + P++ Y + L L P
Sbjct 119 LAGTLLASFMFTLLGIIAASHIKSLNQFLLLSV-PLESICYIPLLAYLLGYMQNSLSLFP 177
Query 183 TQ 184
T
Sbjct 178 TS 179
>gi|335431149|ref|ZP_08558032.1| ABC transporter permease [Haloplasma contractile SSD-17B]
gi|334886854|gb|EGM25199.1| ABC transporter permease [Haloplasma contractile SSD-17B]
Length=242
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/249 (28%), Positives = 117/249 (47%), Gaps = 20/249 (8%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M L EL + L A++ + I++AVL V + P ++ D+ ++
Sbjct 1 MNNLRSLYVFELIRMKKYNILGASLLTSFIFIAVLHFSGVEDISLIFPLLIFLDVTVMSM 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL 120
+G T+FFEKQE T+ ++ +P+ EY+ +K+ + I+L T+ GY +L
Sbjct 61 LLIGVTMFFEKQEGTLKTMLVSPIGKSEYIISKVLSNVTINLL------TLYTLYGYSVL 114
Query 121 --PLVAGIVLGTLLMLLVGFSSSLPFASVTDW------FLAAVIPLAIMLAPPVVH-YSG 171
L I+L TL ++L+ SL +T + L A++ ++ L PVV Y G
Sbjct 115 FKELEVNILLLTLYVILIASFHSLIGIYITYYKKTFTDLLVAIMTYSLALTIPVVLVYVG 174
Query 172 LWP----NPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFG 227
+ ++YLIPTQ +LL+ + Q S W++ ++ Y I+ L F
Sbjct 175 ILNIGLIEKMMYLIPTQASMLLMISVTPQ-SFEVWELIISLSYLIIGGGLLYYIVFRKFD 233
Query 228 RYVVQRSGV 236
+ V+ SGV
Sbjct 234 DFAVRESGV 242
>gi|225174796|ref|ZP_03728794.1| ABC-type transport system, permease component [Dethiobacter alkaliphilus
AHT 1]
gi|225169923|gb|EEG78719.1| ABC-type transport system, permease component [Dethiobacter alkaliphilus
AHT 1]
Length=241
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/227 (26%), Positives = 102/227 (45%), Gaps = 9/227 (3%)
Query 17 RQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFEKQERTI 76
+ L A+ L+W+ VL + + P VL D + +G T+F+EK+E TI
Sbjct 17 KYNILTASFTVALLWIGVLALTEIQDLSMILPLVLFLDATSMAMVLIGVTMFYEKEEGTI 76
Query 77 GAIVSTPLRFWEYLAAKLTVLLAISLFVAVVV---ATIVHGLGYHLLPLVAGIVLGTLLM 133
++ +P+ EY+ AK + +L +V A I + +L L A ++L +
Sbjct 77 KTLLVSPINKVEYILAKTATNIFSNLITLALVYAYARIFREISINLAMLAAAVILISFFH 136
Query 134 LLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP----VLYLIPTQGPLLL 189
LVGF + T + V +++ P ++ GL + +L +PT+ +++
Sbjct 137 SLVGFVLTYSSRDFTSLLVGMVKYTVVLMVPVILEQVGLIADETVSNLLLALPTKASMVM 196
Query 190 LGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGV 236
L AA L W++ A+ Y + +A L F Y V+ SGV
Sbjct 197 LNAAAHTPEL--WELLLAIGYLVAASAILFVYVVRRFDEYAVKESGV 241
>gi|240102889|ref|YP_002959198.1| hypothetical protein TGAM_0832 [Thermococcus gammatolerans EJ3]
gi|239910443|gb|ACS33334.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length=232
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (28%), Positives = 97/198 (49%), Gaps = 12/198 (6%)
Query 8 LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV 67
+R + L VR + L + +LL P P P L+ + ++GF FVG +
Sbjct 5 VRTNIVLGVRSYVYPIYLLVALAYGLMLLAFPERYLPTMVPIFLLFEPGLVGFMFVGTEI 64
Query 68 FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV 123
F EK++ IGA+ TP+ + Y+ AK +L +S+ AV++ + ++GL Y +V
Sbjct 65 FAEKKDGAIGALAVTPIDWRSYILAKTLLLSLLSVIGAVLIMAVGTRSLNGLPY----VV 120
Query 124 AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP---VLYL 180
G L +++ L+G + S + + D+F+ + L + L P HY G VLY
Sbjct 121 VGTFLVSIVYTLLGIAVSAKYRDLDDYFIPILGVLVVSLL-PFAHYHGYLTGDVWKVLYA 179
Query 181 IPTQGPLLLLGAAFDQVS 198
+P+ + A F++++
Sbjct 180 VPSYPAIYFFKAPFEEIA 197
>gi|319934837|ref|ZP_08009282.1| hypothetical protein HMPREF9488_00113 [Coprobacillus sp. 29_1]
gi|319810214|gb|EFW06576.1| hypothetical protein HMPREF9488_00113 [Coprobacillus sp. 29_1]
Length=226
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/164 (27%), Positives = 85/164 (52%), Gaps = 4/164 (2%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
R++ ++ ++ Q++ F V +++ VL+ +P + + ++ D A +G FF
Sbjct 2 RIIHLIKGDIVFQIKYGFYFLYVVFTVLYAFVLVILPETWQETVASLMIYSDPAAMGLFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
+G V FEK +R + ++ +P+ EY+ +K+ L IS VA+++A I H +L+ +
Sbjct 62 MGAIVLFEKSQRVLNSLAVSPIHISEYILSKIISLALISEIVAMILAVISH--HQNLIMV 119
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPP 165
G +L + + L+G S S+ + L V P+ I+ PP
Sbjct 120 FIGTLLSSFIFSLLGLIVSTKIHSLNQFILWTV-PVEILCFVPP 162
>gi|302669267|ref|YP_003832417.1| ABC transporter permease [Butyrivibrio proteoclasticus B316]
gi|302396931|gb|ADL35835.1| ABC transporter permease protein [Butyrivibrio proteoclasticus
B316]
Length=225
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/170 (29%), Positives = 78/170 (46%), Gaps = 4/170 (2%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
+L Q R F F + +L +P S + ++ D A +G FF+G + E
Sbjct 10 DLRFQARYGFYLLYGFLTTFYTIILFALPESWKEKMAAILIFSDPAAMGLFFMGAIILLE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV-HGLGYHLLPLVAGIVLG 129
K ++ TPL+ Y+ +K+ L AISL VA V+A I H H+L L AG L
Sbjct 70 KSQKVTSYFAITPLKARNYVWSKVLSLCAISLVVAAVLAIIAGHK---HILLLFAGTFLA 126
Query 130 TLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLY 179
+++ L G + +S+ + L V I P ++H G+ P +Y
Sbjct 127 SVIFTLCGIIVATKISSLNQFILFTVPIEIIGFIPAILHLFGVGSFPKVY 176
>gi|341581242|ref|YP_004761734.1| hypothetical protein GQS_00770 [Thermococcus sp. 4557]
gi|340808900|gb|AEK72057.1| hypothetical protein GQS_00770 [Thermococcus sp. 4557]
Length=232
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%)
Query 8 LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV 67
+R + L VR + L + +LL P P P L+ + ++GF FVG +
Sbjct 5 VRTNIVLGVRSYVYPIYLLVALAYGLMLLAFPERYLPTMVPIFLLFEPGLVGFMFVGTEI 64
Query 68 FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV 123
F EK++ IG + TP+ + Y+ AK +L +S+ AV++ I ++GL Y +V
Sbjct 65 FAEKKDGAIGTLAVTPIDWRSYILAKTLLLSLLSVIGAVLIMAIGTRSLNGLPY----VV 120
Query 124 AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSG-----LWPNPVL 178
G L +++ L+G + S + + D+F+ + + + L P HY G +W VL
Sbjct 121 VGTFLVSIVYTLLGIAVSAKYRDLDDYFIPILGVMVVSLL-PFAHYHGYLTGEVW--KVL 177
Query 179 YLIPTQGPLLLLGAAFDQVS 198
Y +P+ + A F++++
Sbjct 178 YAVPSYPAIYFFKAPFEEIT 197
>gi|297560640|ref|YP_003679614.1| hypothetical protein Ndas_1679 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296845088|gb|ADH67108.1| hypothetical protein Ndas_1679 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length=522
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/235 (34%), Positives = 117/235 (50%), Gaps = 7/235 (2%)
Query 1 MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF 60
M RL+ A LE + +R + A G +W VLL +P Y+L D A G
Sbjct 1 MNRLLAATALESRVGLRYGVVPVAAALGAVWTLVLLAVPAEAAGTVASYLLFLDTAGFGA 60
Query 61 FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAV-VVATIVHG----L 115
F + FE+ E T A+ TPLR E +AA+L VL A++L +AV ++A + G L
Sbjct 61 LFAAALLLFERTEGTRSALTVTPLRAGEGVAARLAVLTALTLLIAVPMLAAALRGRFADL 120
Query 116 GYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPN 175
L P++ G+ L LL+L V + ++ + LAA + +A ++ P+VH SG+ +
Sbjct 121 AQALPPVLGGVALTCLLLLTVCLAVGARSRDLSGFLLAAPLTVAPLVLVPLVHVSGILEH 180
Query 176 PVLYLIPTQ--GPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGR 228
P+LY +PT L+ LGAA AP + VY + AA AA GR
Sbjct 181 PLLYAVPTTAGADLIRLGAAPGSPDAAPAALVAGTVYAVAWAATGVVAASRAVGR 235
>gi|150389288|ref|YP_001319337.1| ABC-2 type transporter [Alkaliphilus metalliredigens QYMF]
gi|149949150|gb|ABR47678.1| ABC-2 type transporter [Alkaliphilus metalliredigens QYMF]
Length=230
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/229 (28%), Positives = 110/229 (49%), Gaps = 8/229 (3%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
R++ AL+ ++ Q +Q F V L+++ ++ P A P V+ D + IGFFF
Sbjct 2 RILNALKADMRFQFKQGFYFVYVILTLMYMILISQFPHGFTSYAVPIVIFTDPSFIGFFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
+GG V EK + + +V TPLR EYL +K+ L ++ +A + + ++ + L
Sbjct 62 IGGIVMLEKVQGILQYLVVTPLRPREYLISKVISLTLLAEVAGFAIAYVTYKAPFNWILL 121
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP-VLYLI 181
GI L L GF + ++ ++F+ +IP + L P ++Y +PN +L L+
Sbjct 122 FIGIFLTAAFFTLYGFVVAASCNTINEYFI-KMIPYMLGLMIPTLYYFT-YPNVWILRLL 179
Query 182 PTQGPLLLLGAAFDQVSLAPW--QVGYAVVYPIVCAAGLCRAAKALFGR 228
P+ L+ AF+ + +GY V+ IV L R K +
Sbjct 180 PSVAGFNLVNGAFNGIRFLEMAAYIGYLVLINIVT---LIRVEKYFIKK 225
>gi|325970505|ref|YP_004246696.1| ABC transporter permease [Spirochaeta sp. Buddy]
gi|324025743|gb|ADY12502.1| putative ABC transporter, permease protein [Spirochaeta sp. Buddy]
Length=227
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/224 (25%), Positives = 106/224 (48%), Gaps = 6/224 (2%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
R V L ++ Q + F L++ +L +P + + +++ D A++G FF
Sbjct 2 RFVALLVGDIRFQYKYGFYFLYGIFSLMYSVILQLLPEAWKANVSVLMVLSDPAMLGLFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
+G + FEK+E T+ +I +P +EY+ +KL L IS VA+++A+ V G+ H +
Sbjct 62 MGAILQFEKEEHTLHSIAVSPATVYEYMLSKLVSLGIISTLVALLLAS-VGGVLDHPIRF 120
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP 182
+ LG+ L +G + S + FL A P +++ P + Y W + +L+
Sbjct 121 CIAVFLGSCLFSSLGLVLATK-TSTLNQFLIATAPCELVITVPAILYL-FWDSSSWFLLH 178
Query 183 TQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALF 226
L+ L + + + A + + +V+ ++C A K F
Sbjct 179 PGSSLITLFLSDEHILFAFFSL---LVWTLLCVWLAIYATKKFF 219
>gi|225018217|ref|ZP_03707409.1| hypothetical protein CLOSTMETH_02155 [Clostridium methylpentosum
DSM 5476]
gi|224949014|gb|EEG30223.1| hypothetical protein CLOSTMETH_02155 [Clostridium methylpentosum
DSM 5476]
Length=227
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/116 (31%), Positives = 68/116 (59%), Gaps = 4/116 (3%)
Query 53 GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV 112
D A +G FF+G V EK ++ + A+V +P++ EY+ +K L+AIS +A+++ +V
Sbjct 52 SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKISEYILSKTVALIAISTVIALILG-VV 110
Query 113 HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVV 167
G HLL + G L + + ++G ++ +++ + FL ++P+ I+ PP+V
Sbjct 111 SG-SNHLLGITVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIV 164
>gi|254977267|ref|ZP_05273739.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-66c26]
gi|255094596|ref|ZP_05324074.1| putative ABC transporter, permease protein [Clostridium difficile
CIP 107932]
gi|255316352|ref|ZP_05357935.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-76w55]
6 more sequence titles
Length=227
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/116 (32%), Positives = 67/116 (58%), Gaps = 4/116 (3%)
Query 53 GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV 112
D A +G FF+G V EK ++ + A+V +P++ EY+ +K L+AIS +AV++ V
Sbjct 52 SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKVSEYILSKTIALIAISTIIAVILG-FV 110
Query 113 HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVV 167
G HLL + G L + + ++G ++ +++ + FL ++P+ I+ PP+V
Sbjct 111 SG-SNHLLGIAVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIV 164
>gi|255306173|ref|ZP_05350345.1| putative ABC transporter, permease protein [Clostridium difficile
ATCC 43255]
Length=227
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/116 (29%), Positives = 66/116 (57%), Gaps = 4/116 (3%)
Query 53 GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV 112
D A +G FF+G V EK ++ + A+V +P++ EY+ +K L+AIS +A+++ +
Sbjct 52 SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKVSEYILSKTIALIAISTVIALILGVVS 111
Query 113 HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVV 167
HLL + G L + + ++G ++ +++ + FL ++P+ I+ PP+V
Sbjct 112 D--SNHLLGITVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIV 164
>gi|310829074|ref|YP_003961431.1| hypothetical protein ELI_3509 [Eubacterium limosum KIST612]
gi|308740808|gb|ADO38468.1| hypothetical protein ELI_3509 [Eubacterium limosum KIST612]
Length=224
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/173 (25%), Positives = 83/173 (48%), Gaps = 4/173 (2%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
R+V L+ ++ Q + F + LI+ VL +P + + ++ D A +G FF
Sbjct 2 RIVCLLKGDIRQQWKYGFYGLYLILTLIYAGVLSILPSNWKVTGTALIIFSDPAALGLFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
+G + E+ +R + ++ +P+R EY+ +K L IS A V+ + G LPL
Sbjct 62 MGAVILLERSQRVLESLAVSPVRPEEYIVSKALSLALISTLAAAVLGVVG---GSPSLPL 118
Query 123 V-AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWP 174
+ AG G +L +VG ++ +++ + L V ++ P ++ +G P
Sbjct 119 LCAGTFTGAMLFSMVGLAAGTSISTINQFILVTVPIELVIFGPAILWVAGYRP 171
>gi|345022747|ref|ZP_08786360.1| ABC transporter permease [Ornithinibacillus sp. TW25]
Length=245
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/186 (23%), Positives = 86/186 (47%), Gaps = 1/186 (0%)
Query 8 LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV 67
++ ++ Q R F + F I++ VLL +P+ R + +++ D +GFFFVG V
Sbjct 6 IKQDVRFQFRHGFYYVYAFVTAIYITVLLLIPMEFRSLWGIFIVFTDPGTLGFFFVGAIV 65
Query 68 FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIV 127
E+ ++ + + TP++ YL +K+ L I+ ++ + + L I+
Sbjct 66 MLERNQQLLTYLFITPVKLKSYLWSKIVSLTLIAWLTSLFIVYSTLDTTVSVTFLSIAIL 125
Query 128 LGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIPTQGPL 187
L + G ++ S+ + A++ + IM PV++Y + ++P+ L
Sbjct 126 LCSFFFTSCGLVIAVDSPSMNHFMFRAIVSM-IMFYIPVLNYLDWISFRLFEIMPSYSAL 184
Query 188 LLLGAA 193
+LL A
Sbjct 185 ILLEYA 190
>gi|266623835|ref|ZP_06116770.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288864349|gb|EFC96647.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length=227
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/124 (30%), Positives = 69/124 (56%), Gaps = 4/124 (3%)
Query 53 GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV 112
D A +G FF+G V EK ++ + A+V +P++ EY+ +K L+AIS +A+++ +V
Sbjct 52 SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKISEYILSKTVALIAISTVIALILG-LV 110
Query 113 HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVHYSG 171
G HLL + G L + + ++G ++ +++ + FL ++P+ I+ PP+
Sbjct 111 SG-SNHLLGIAVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIAGLFV 168
Query 172 LWPN 175
PN
Sbjct 169 TLPN 172
>gi|89893659|ref|YP_517146.1| hypothetical protein DSY0913 [Desulfitobacterium hafniense Y51]
gi|89333107|dbj|BAE82702.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=206
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/180 (27%), Positives = 85/180 (48%), Gaps = 1/180 (0%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
RL A ++ Q + F F +++ A+L +P + + +L+ D A +GFFF
Sbjct 2 RLFMATVHDIRYQAKYGFYFLYAFITVLYCAILYFLPDQHKAIGASLILLTDPATLGFFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
VGG EK E +PL+ EY+ AK L IS A + H L
Sbjct 62 VGGIWLLEKDEGIHRFYGISPLKPIEYILAKGLSLAMISTLSAFFIVRFSHPGSADYPLL 121
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP 182
++ I +G+ + L+G + + +AS + ++ +P+ ++L P + + +PVL ++P
Sbjct 122 LSSIFVGSCIFTLLGLAMA-TYASSVNSYMVRGVPVGMILILPPLLVTFQISHPVLEIMP 180
>gi|255306779|ref|ZP_05350950.1| putative ABC transporter, permease protein [Clostridium difficile
ATCC 43255]
Length=227
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (25%), Positives = 86/176 (49%), Gaps = 19/176 (10%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
++ Q + F +F +I++ ++ P +R ++ D A +G FF+G V E
Sbjct 10 DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI 126
K +R + ++ +P++ EY+ +K+ L IS VA+ +A I L ++ + + I
Sbjct 70 KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTIGTFFSSI 128
Query 127 VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP 174
+ L ++L +SSL + F+ IP+ I+ PP+++ Y+ L+P
Sbjct 129 IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP 178
>gi|254975390|ref|ZP_05271862.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-66c26]
gi|255092778|ref|ZP_05322256.1| putative ABC transporter, permease protein [Clostridium difficile
CIP 107932]
gi|255314519|ref|ZP_05356102.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-76w55]
7 more sequence titles
Length=225
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (25%), Positives = 86/176 (49%), Gaps = 19/176 (10%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
++ Q + F +F +I++ ++ P +R ++ D A +G FF+G V E
Sbjct 10 DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI 126
K +R + ++ +P++ EY+ +K+ L IS VA+ +A I L ++ + + I
Sbjct 70 KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTIGTFFSSI 128
Query 127 VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP 174
+ L ++L +SSL + F+ IP+ I+ PP+++ Y+ L+P
Sbjct 129 IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP 178
>gi|255100889|ref|ZP_05329866.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-63q42]
Length=227
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/176 (25%), Positives = 86/176 (49%), Gaps = 19/176 (10%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
++ Q + F +F +I++ ++ P +R ++ D A +G FF+G V E
Sbjct 10 DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIVIIMIYSDPAAMGLFFMGAIVLLE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI 126
K +R + ++ +P++ EY+ +K+ L IS VA+ +A I L ++ + + I
Sbjct 70 KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTIGTFFSSI 128
Query 127 VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP 174
+ L ++L +SSL + F+ IP+ I+ PP+++ Y+ L+P
Sbjct 129 IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP 178
>gi|126699361|ref|YP_001088258.1| ABC transporter permease [Clostridium difficile 630]
gi|115250798|emb|CAJ68622.1| ABC-type transport system, multidrug-family permease [Clostridium
difficile]
Length=227
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/172 (25%), Positives = 85/172 (50%), Gaps = 11/172 (6%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
++ Q + F +F +I++ ++ P +R ++ D A +G FF+G V E
Sbjct 10 DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIVLGT 130
K +R + ++ +P++ EY+ +K+ L IS VA+ +A I L ++ + G +
Sbjct 70 KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTI-GTFFSS 127
Query 131 LLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP 174
++ L+G + AS + F+ IP+ I+ PP+++ Y+ L+P
Sbjct 128 IIFSLLGLIIASK-ASSLNQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP 178
>gi|219668040|ref|YP_002458475.1| ABC transporter [Desulfitobacterium hafniense DCB-2]
gi|219538300|gb|ACL20039.1| ABC-2 type transporter [Desulfitobacterium hafniense DCB-2]
Length=234
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/180 (26%), Positives = 85/180 (48%), Gaps = 1/180 (0%)
Query 3 RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF 62
RL A ++ Q + F F +++ A+L +P + + +L+ D A +GFFF
Sbjct 2 RLFMATVHDIRYQAKYGFYFLYAFITVLYCAILYFLPDQHKAIGASLILLTDPATLGFFF 61
Query 63 VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL 122
VGG EK E +PL+ EY+ AK L IS A + H L
Sbjct 62 VGGIWLLEKDEGIHRFYGISPLKPIEYILAKGLSLAMISTLSAFFIVRFSHPGSADYPLL 121
Query 123 VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP 182
++ I +G+ + L+G + + +A+ + ++ +P+ ++L P + + +PVL ++P
Sbjct 122 LSSIFVGSCIFTLLGLAMA-TYANSVNSYMVKGVPVGMILILPPLLVAFQISHPVLEIMP 180
>gi|255655773|ref|ZP_05401182.1| putative ABC transporter, permease protein [Clostridium difficile
QCD-23m63]
gi|296450992|ref|ZP_06892739.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP08]
gi|296879042|ref|ZP_06903038.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP07]
gi|296260210|gb|EFH07058.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP08]
gi|296429915|gb|EFH15766.1| ABC superfamily ATP binding cassette transporter, permease protein
[Clostridium difficile NAP07]
Length=227
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/176 (24%), Positives = 86/176 (49%), Gaps = 19/176 (10%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
++ Q + F +F +I++ ++ P +R ++ D A +G FF+G V E
Sbjct 10 DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE 69
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI 126
K +R + ++ +P++ EY+ +K+ L IS VA+++A I L ++ + + I
Sbjct 70 KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMLIA-ITLNLDNIIISTIGTFFSSI 128
Query 127 VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP 174
+ L ++L +SSL + F+ IP+ I+ PP+++ Y+ +P
Sbjct 129 IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLVDTKSYANFYP 178
>gi|332298445|ref|YP_004440367.1| ABC transporter permease [Treponema brennaborense DSM 12168]
gi|332181548|gb|AEE17236.1| ABC transporter permease [Treponema brennaborense DSM 12168]
Length=237
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (46%), Gaps = 2/160 (1%)
Query 11 ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE 70
++ Q+R F F L++ A++ +P S R A + D A +G FF+G + FE
Sbjct 11 DVRFQIRYGFYVLYAFFTLLYTAIVAALPESWRYEAAVVCIFSDPATLGLFFMGAVILFE 70
Query 71 KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIVLGT 130
K +R + +I P+ Y+AAK+ +SL V + + G + + AG++L +
Sbjct 71 KSQRVLDSINVAPVSKTAYVAAKVCSFAVVSLAVGFAIG-LASGAVRNAVTFAAGLLLSS 129
Query 131 LLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYS 170
L + S+ + F+ +P+ I P + Y
Sbjct 130 SLFTFAALCVASRCGSL-NAFVLGTVPVEIAGTVPGILYQ 168
Lambda K H
0.331 0.145 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 322714888716
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40