BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2687c

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|340627688|ref|YP_004746140.1|  putative antibiotic-transport i...   457    6e-127
gi|15609824|ref|NP_217203.1|  antibiotic ABC transporter transmem...   457    6e-127
gi|289448342|ref|ZP_06438086.1|  antibiotic-transport membrane le...   456    1e-126
gi|253798231|ref|YP_003031232.1|  hypothetical protein TBMG_01286...   453    1e-125
gi|118473059|ref|YP_885885.1|  antibiotic ABC transporter transme...   355    4e-96 
gi|240169711|ref|ZP_04748370.1|  antibiotic-transport integral me...   345    3e-93 
gi|108799170|ref|YP_639367.1|  putative antibiotic-transport inte...   333    1e-89 
gi|183982041|ref|YP_001850332.1|  antibiotic-transport integral m...   319    2e-85 
gi|317507609|ref|ZP_07965322.1|  antibiotic transport system perm...   319    2e-85 
gi|120401790|ref|YP_951619.1|  putative antibiotic-transport inte...   314    6e-84 
gi|296171906|ref|ZP_06852970.1|  antibiotic-transport ABC superfa...   311    4e-83 
gi|118618651|ref|YP_906983.1|  antibiotic-transport integral memb...   295    4e-78 
gi|169628947|ref|YP_001702596.1|  antibiotic ABC transporter memb...   281    6e-74 
gi|291302140|ref|YP_003513418.1|  hypothetical protein Snas_4682 ...   167    1e-39 
gi|282164304|ref|YP_003356689.1|  putative ABC transporter [Metha...   138    6e-31 
gi|147920489|ref|YP_685718.1|  hypothetical protein RCIX1070 [unc...   137    9e-31 
gi|156740972|ref|YP_001431101.1|  ABC-2 type transporter [Roseifl...  93.2    3e-17 
gi|148657930|ref|YP_001278135.1|  ABC-2 type transporter [Roseifl...  89.7    3e-16 
gi|163848262|ref|YP_001636306.1|  ABC-2 type transporter [Chlorof...  84.0    2e-14 
gi|322367870|ref|ZP_08042440.1|  putative ABC transporter [Halada...  81.3    1e-13 
gi|18976950|ref|NP_578307.1|  hypothetical protein PF0578 [Pyroco...  73.6    2e-11 
gi|242398581|ref|YP_002994005.1|  hypothetical protein TSIB_0591 ...  72.4    5e-11 
gi|57640628|ref|YP_183106.1|  hypothetical protein TK0693 [Thermo...  69.7    4e-10 
gi|212223980|ref|YP_002307216.1|  membrane protein, conserved [Th...  68.6    7e-10 
gi|344327781|gb|EGW39194.1|  ABC-2 type transporter family protei...  68.2    1e-09 
gi|298388108|ref|ZP_06997653.1|  ABC-2 type transporter superfami...  64.7    1e-08 
gi|309776795|ref|ZP_07671769.1|  conserved hypothetical protein [...  63.2    3e-08 
gi|335431149|ref|ZP_08558032.1|  ABC transporter permease [Halopl...  62.8    4e-08 
gi|225174796|ref|ZP_03728794.1|  ABC-type transport system, perme...  62.0    8e-08 
gi|240102889|ref|YP_002959198.1|  hypothetical protein TGAM_0832 ...  60.5    2e-07 
gi|319934837|ref|ZP_08009282.1|  hypothetical protein HMPREF9488_...  60.1    3e-07 
gi|302669267|ref|YP_003832417.1|  ABC transporter permease [Butyr...  59.7    3e-07 
gi|341581242|ref|YP_004761734.1|  hypothetical protein GQS_00770 ...  58.9    6e-07 
gi|297560640|ref|YP_003679614.1|  hypothetical protein Ndas_1679 ...  58.2    1e-06 
gi|150389288|ref|YP_001319337.1|  ABC-2 type transporter [Alkalip...  56.6    3e-06 
gi|325970505|ref|YP_004246696.1|  ABC transporter permease [Spiro...  56.2    4e-06 
gi|225018217|ref|ZP_03707409.1|  hypothetical protein CLOSTMETH_0...  55.8    5e-06 
gi|254977267|ref|ZP_05273739.1|  putative ABC transporter, permea...  55.5    7e-06 
gi|255306173|ref|ZP_05350345.1|  putative ABC transporter, permea...  55.1    8e-06 
gi|310829074|ref|YP_003961431.1|  hypothetical protein ELI_3509 [...  55.1    8e-06 
gi|345022747|ref|ZP_08786360.1|  ABC transporter permease [Ornith...  54.7    1e-05 
gi|266623835|ref|ZP_06116770.1|  conserved hypothetical protein [...  53.9    2e-05 
gi|89893659|ref|YP_517146.1|  hypothetical protein DSY0913 [Desul...  53.5    3e-05 
gi|255306779|ref|ZP_05350950.1|  putative ABC transporter, permea...  53.5    3e-05 
gi|254975390|ref|ZP_05271862.1|  putative ABC transporter, permea...  53.5    3e-05 
gi|255100889|ref|ZP_05329866.1|  putative ABC transporter, permea...  52.8    4e-05 
gi|126699361|ref|YP_001088258.1|  ABC transporter permease [Clost...  52.8    4e-05 
gi|219668040|ref|YP_002458475.1|  ABC transporter [Desulfitobacte...  52.4    5e-05 
gi|255655773|ref|ZP_05401182.1|  putative ABC transporter, permea...  52.4    5e-05 
gi|332298445|ref|YP_004440367.1|  ABC transporter permease [Trepo...  51.6    9e-05 


>gi|340627688|ref|YP_004746140.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium canettii CIPT 
140010059]
 gi|340005878|emb|CCC45044.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium canettii CIPT 
140010059]
Length=237

 Score =  457 bits (1176),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 236/237 (99%), Positives = 237/237 (100%), Gaps = 0/237 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIA+IGF
Sbjct  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAVIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL
Sbjct  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237
            IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL
Sbjct  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237


>gi|15609824|ref|NP_217203.1| antibiotic ABC transporter transmembrane protein [Mycobacterium 
tuberculosis H37Rv]
 gi|15842225|ref|NP_337262.1| hypothetical protein MT2761 [Mycobacterium tuberculosis CDC1551]
 gi|31793859|ref|NP_856352.1| antibiotic ABC transporter transmembrane protein [Mycobacterium 
bovis AF2122/97]
 68 more sequence titles
 Length=237

 Score =  457 bits (1176),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 237/237 (100%), Positives = 237/237 (100%), Gaps = 0/237 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF
Sbjct  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL
Sbjct  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237
            IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL
Sbjct  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237


>gi|289448342|ref|ZP_06438086.1| antibiotic-transport membrane leucine and valine rich protein 
ABC transporter [Mycobacterium tuberculosis CPHL_A]
 gi|289421300|gb|EFD18501.1| antibiotic-transport membrane leucine and valine rich protein 
ABC transporter [Mycobacterium tuberculosis CPHL_A]
Length=237

 Score =  456 bits (1174),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 236/237 (99%), Positives = 237/237 (100%), Gaps = 0/237 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF
Sbjct  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVV+ATIVHGLGYHLL
Sbjct  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVLATIVHGLGYHLL  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237
            IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL
Sbjct  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237


>gi|253798231|ref|YP_003031232.1| hypothetical protein TBMG_01286 [Mycobacterium tuberculosis KZN 
1435]
 gi|289553527|ref|ZP_06442737.1| antibiotic-transport membrane leucine and valine rich protein 
ABC transporter [Mycobacterium tuberculosis KZN 605]
 gi|297635295|ref|ZP_06953075.1| hypothetical protein MtubK4_14285 [Mycobacterium tuberculosis 
KZN 4207]
 6 more sequence titles
 Length=237

 Score =  453 bits (1165),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 236/237 (99%), Positives = 236/237 (99%), Gaps = 0/237 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF
Sbjct  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL
Sbjct  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL
Sbjct  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237
            IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLC AAKALFGRYVVQRSGVL
Sbjct  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCWAAKALFGRYVVQRSGVL  237


>gi|118473059|ref|YP_885885.1| antibiotic ABC transporter transmembrane protein [Mycobacterium 
smegmatis str. MC2 155]
 gi|118174346|gb|ABK75242.1| probable antibiotic-transport integral membrane leucine and valine 
rich protein abc transporter [Mycobacterium smegmatis 
str. MC2 155]
Length=237

 Score =  355 bits (910),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 178/237 (76%), Positives = 202/237 (86%), Gaps = 0/237 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRL  ALRLELT+Q RQKFLHAAVFSGLIWLAVLLP+P S+RPV EPYVL+GD+AIIGF
Sbjct  1    MTRLWAALRLELTVQTRQKFLHAAVFSGLIWLAVLLPLPHSVRPVVEPYVLIGDVAIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+GG VFFEKQERT+GAI+STPLRF EYL AKLTVL AISLFVAVVVATI HGL YH  
Sbjct  61   FFIGGAVFFEKQERTLGAIISTPLRFAEYLTAKLTVLAAISLFVAVVVATITHGLTYHAA  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
             L+ G++LGTLLML+VGF SSLPFASV+DW +A VIPLA+ML PP++HYSG+W +PVLY 
Sbjct  121  ALIGGVLLGTLLMLVVGFISSLPFASVSDWAMATVIPLAVMLVPPILHYSGVWTHPVLYA  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGVL  237
             P QGP+LLLGAAFDQ  L  WQ+GYAV YP+ C AGL  AA A+F  YVV+RSGVL
Sbjct  181  APMQGPMLLLGAAFDQSVLNAWQIGYAVAYPLACLAGLWWAAHAMFDHYVVERSGVL  237


>gi|240169711|ref|ZP_04748370.1| antibiotic-transport integral membrane leucine and valine rich 
protein ABC transporter [Mycobacterium kansasii ATCC 12478]
Length=235

 Score =  345 bits (886),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 177/233 (76%), Positives = 201/233 (87%), Gaps = 1/233 (0%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            RL  A+RLE+TLQVRQ+FLHAA+FSGLIWLAVLLPMP  LRPVAEPYVL GDI+IIGFFF
Sbjct  2    RLAQAVRLEVTLQVRQRFLHAAIFSGLIWLAVLLPMPDHLRPVAEPYVLSGDISIIGFFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            V GTVFFEKQERT+ A+V++PLRF EYLAAKL VLL ISL VAVVVATIVHG  YH  P+
Sbjct  62   VAGTVFFEKQERTLSAVVASPLRFGEYLAAKLIVLLMISLGVAVVVATIVHGFSYHPAPM  121

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP  182
            + G+ LGTLLMLLVGF SSLPFAS++DWFL A IPLA+M   PV++YSG+WPNPVLYL+P
Sbjct  122  IVGVGLGTLLMLLVGFISSLPFASISDWFLVATIPLAVM-NLPVLYYSGVWPNPVLYLLP  180

Query  183  TQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            TQGPLLLLGAAFDQ+ LAPWQ+GYAVVYP  C A L  AA A+FGRYVV ++G
Sbjct  181  TQGPLLLLGAAFDQLRLAPWQIGYAVVYPAACVAALYWAADAMFGRYVVAQAG  233


>gi|108799170|ref|YP_639367.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium sp. MCS]
 gi|119868285|ref|YP_938237.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium sp. KMS]
 gi|126434778|ref|YP_001070469.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium sp. JLS]
 gi|108769589|gb|ABG08311.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium sp. MCS]
 gi|119694374|gb|ABL91447.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium sp. KMS]
 gi|126234578|gb|ABN97978.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium sp. JLS]
Length=235

 Score =  333 bits (854),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 167/235 (72%), Positives = 201/235 (86%), Gaps = 1/235 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRL+  LRLELTLQ RQ+FLHAAVFSGLIWLAVLLP+   LR  AEPYVLVGDI+IIGF
Sbjct  1    MTRLLSVLRLELTLQNRQRFLHAAVFSGLIWLAVLLPLSHGLRAAAEPYVLVGDISIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+GG+VFFEKQERT+GA++STPLRF EYLAAK+TVL ++SL VAV V TI HG+ Y  +
Sbjct  61   FFIGGSVFFEKQERTLGAMISTPLRFGEYLAAKVTVLCSVSLLVAVTVVTIAHGVAYRPV  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            P+VAG+VLGTLLMLLVGF +SLPFASV+DWFLA  +P+A+M   PV+HYSG+WP+P L+L
Sbjct  121  PMVAGVVLGTLLMLLVGFITSLPFASVSDWFLAGTVPIAVM-NLPVLHYSGVWPHPALHL  179

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            +PTQGPL+LLGAAFDQ+ L PWQV YA+ YP+VC  GL  AAKA+F R+VV+ +G
Sbjct  180  VPTQGPLMLLGAAFDQLHLQPWQVVYAIGYPLVCLIGLYLAAKAMFVRHVVRSAG  234


>gi|183982041|ref|YP_001850332.1| antibiotic-transport integral membrane leucine and valine rich 
protein ABC transporter [Mycobacterium marinum M]
 gi|183175367|gb|ACC40477.1| antibiotic-transport integral membrane leucine and valine rich 
protein ABC transporter [Mycobacterium marinum M]
Length=236

 Score =  319 bits (817),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 170/235 (73%), Positives = 195/235 (83%), Gaps = 1/235 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M+RL  ALRLELTLQ RQ+FLHAAVFSGLIWLAVLLPMP  LR VAEPYVL GDI IIGF
Sbjct  1    MSRLSTALRLELTLQNRQRFLHAAVFSGLIWLAVLLPMPADLRSVAEPYVLSGDITIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FFV GTVFFEKQERT+ A+++TPLRF EYLAAKL VLL +S+ VAVVVATI HGL Y   
Sbjct  61   FFVAGTVFFEKQERTLSAVIATPLRFGEYLAAKLAVLLMVSVGVAVVVATIAHGLSYSAA  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            P++  + LGTLLMLLVGF SSLPFAS++DWFL A IPLA+M   PV++YSG+WP+PVLY 
Sbjct  121  PMIVAVALGTLLMLLVGFISSLPFASISDWFLVATIPLAVM-NLPVLYYSGVWPHPVLYA  179

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            IPTQGPLLLLGAAF Q++LAPWQ+GYA++YP VC   L R A+A F RYVV  +G
Sbjct  180  IPTQGPLLLLGAAFGQLTLAPWQIGYALLYPSVCVGVLYRVAEASFARYVVAAAG  234


>gi|317507609|ref|ZP_07965322.1| antibiotic transport system permease [Segniliparus rugosus ATCC 
BAA-974]
 gi|316254086|gb|EFV13443.1| antibiotic transport system permease [Segniliparus rugosus ATCC 
BAA-974]
Length=236

 Score =  319 bits (817),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 168/235 (72%), Positives = 199/235 (85%), Gaps = 0/235 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRLV  +RLELTLQ RQKFL A +FSGLIWLAVLLPMP  LRP+AEPYVL+GD+AIIGF
Sbjct  1    MTRLVSVVRLELTLQARQKFLLAGIFSGLIWLAVLLPMPAVLRPIAEPYVLIGDVAIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+GG+VFFEKQERT+GA++ TPLRF EYLAAKL  LL+ISL VA+ VATIVHG GY L+
Sbjct  61   FFIGGSVFFEKQERTLGALLCTPLRFAEYLAAKLATLLSISLGVAITVATIVHGTGYRLV  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            P+ AG+VLGTLLMLL GF ++LPF+SVTDWF+A+VIPLA ML PP+VHYSGLWP+PVL L
Sbjct  121  PMTAGVVLGTLLMLLTGFITALPFSSVTDWFMASVIPLACMLIPPIVHYSGLWPHPVLCL  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            +PT+GPL+LLGAAF Q  L  W+  YA+ YP+ C AGLC  A+ LF R+VV+R G
Sbjct  181  VPTEGPLMLLGAAFGQRDLTVWEWAYALAYPLACVAGLCVLAQRLFVRHVVERPG  235


>gi|120401790|ref|YP_951619.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium vanbaalenii 
PYR-1]
 gi|119954608|gb|ABM11613.1| putative antibiotic-transport integral membrane leucine and valine 
rich protein ABC transporter [Mycobacterium vanbaalenii 
PYR-1]
Length=236

 Score =  314 bits (805),  Expect = 6e-84, Method: Compositional matrix adjust.
 Identities = 156/236 (67%), Positives = 191/236 (81%), Gaps = 1/236 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M R V ALRLE TLQVRQ+F+HAAV SG++WL VLLPMP  LR + EPYVL+GDI I+GF
Sbjct  1    MKRWVSALRLEATLQVRQRFVHAAVISGMLWLVVLLPMPQHLRSIVEPYVLIGDITIVGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+GG VFFEKQERT+GA++ +PLRF EYL+ K+ VL  +SLF+AVVV    HG  +   
Sbjct  61   FFIGGAVFFEKQERTLGAVICSPLRFIEYLSVKILVLTGVSLFIAVVVTLATHGTDFRPG  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
             LVAG+VLGTL+MLLVGF S+LPF SV+DWFL+ V+PL I L+ PV++  G+W NP  YL
Sbjct  121  FLVAGVVLGTLVMLLVGFISALPFDSVSDWFLSTVVPLLI-LSLPVMYMLGVWTNPAFYL  179

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGV  236
            +PTQGPLL+  A FDQVSLAPWQVGYAV+YP++CAAGL R A+ +FGRYVV+RSGV
Sbjct  180  VPTQGPLLMFLAVFDQVSLAPWQVGYAVLYPLICAAGLYRLARVMFGRYVVERSGV  235


>gi|296171906|ref|ZP_06852970.1| antibiotic-transport ABC superfamily ATP binding cassette transporter, 
membrane protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295893905|gb|EFG73676.1| antibiotic-transport ABC superfamily ATP binding cassette transporter, 
membrane protein [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=236

 Score =  311 bits (798),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 162/235 (69%), Positives = 191/235 (82%), Gaps = 1/235 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            MTRLV  +RLELTLQVRQ+FLHAAVFSGLIWLAVLLPM   LRPV EPYVL GD  IIGF
Sbjct  1    MTRLVWMMRLELTLQVRQRFLHAAVFSGLIWLAVLLPMSAGLRPVVEPYVLAGDTTIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+ GTVFFE+QERT+ AI+STPLRF EYL A L VLL++S+ VA VV +I HG  YH +
Sbjct  61   FFIAGTVFFERQERTLSAIISTPLRFTEYLTATLAVLLSVSVCVAAVVISIAHGGAYHPV  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            P++ G+ LGTL+MLLVGF++SLPFAS++DWF+ A IPLA+M   PV++ SG+WPNPVLYL
Sbjct  121  PMLLGVALGTLVMLLVGFTTSLPFASISDWFITATIPLAVM-NLPVLYLSGVWPNPVLYL  179

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            +PTQGPLLLLG AF+Q+ L  WQ GYAV YP +  A LC AAKALF RYVV + G
Sbjct  180  LPTQGPLLLLGCAFNQIRLTAWQAGYAVAYPALSIAALCWAAKALFARYVVAKPG  234


>gi|118618651|ref|YP_906983.1| antibiotic-transport integral membrane leucine and valine rich 
protein ABC transporter [Mycobacterium ulcerans Agy99]
 gi|118570761|gb|ABL05512.1| antibiotic-transport integral membrane leucine and valine rich 
protein ABC transporter [Mycobacterium ulcerans Agy99]
Length=221

 Score =  295 bits (755),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 158/222 (72%), Positives = 182/222 (82%), Gaps = 5/222 (2%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M+RL  ALRLELTLQ RQ+FLHAAVFSGLIWLAVLLPMP  LR VAEPYVL GDI IIGF
Sbjct  1    MSRLSTALRLELTLQNRQRFLHAAVFSGLIWLAVLLPMPADLRSVAEPYVLSGDITIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF  GTVFFEKQERT+ A+++TPLRF EYLAAKL VLL +S+ VAVVVATI HG  Y   
Sbjct  61   FFAAGTVFFEKQERTLSAVIATPLRFGEYLAAKLAVLLMVSVGVAVVVATIAHGFSYSAA  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            P++  + LGTLLMLLVGF SSLPFAS++DWFL A IPLA+M   PV++YSG+WP+PVLY 
Sbjct  121  PMIVAVALGTLLMLLVGFISSLPFASISDWFLVATIPLAVM-NLPVLYYSGVWPHPVLYA  179

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAA  222
            IPTQGPLLLLGAAF Q++LAPWQ+GYA    +  + G+CR A
Sbjct  180  IPTQGPLLLLGAAFGQLTLAPWQIGYA----LFVSVGVCRGA  217


>gi|169628947|ref|YP_001702596.1| antibiotic ABC transporter membrane protein [Mycobacterium abscessus 
ATCC 19977]
 gi|169240914|emb|CAM61942.1| Probable ABC transporter antibiotic-transport integral membrane 
protein [Mycobacterium abscessus]
Length=237

 Score =  281 bits (719),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 158/235 (68%), Positives = 184/235 (79%), Gaps = 1/235 (0%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M R   ALRLELTLQVRQKFLHAAVFSG IWLAVLLPM  SLR  AEPY+L+GDI+IIGF
Sbjct  1    MNRFSQALRLELTLQVRQKFLHAAVFSGFIWLAVLLPMSRSLRSAAEPYILIGDISIIGF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+ GTVFFEKQE T+GA++ TPLRF EYL+AKL VLLAISL V V V+T+ +G  Y  L
Sbjct  61   FFIAGTVFFEKQEHTLGAVICTPLRFREYLSAKLVVLLAISLVVGVGVSTVANGFHYRPL  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYL  180
            PL+ G+VLG+LLMLL GF +SLPFAS++DWFLAA IPLAI L  P++ +SGLW  P LY+
Sbjct  121  PLLVGVVLGSLLMLLSGFLTSLPFASISDWFLAATIPLAI-LTLPILGFSGLWNTPGLYV  179

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            +PT GPLLL GAAF QV L PW   YAV YP++  AGL    K  FG+YVV +SG
Sbjct  180  VPTYGPLLLFGAAFGQVELTPWLAVYAVGYPVLGIAGLSWLCKIAFGKYVVAQSG  234


>gi|291302140|ref|YP_003513418.1| hypothetical protein Snas_4682 [Stackebrandtia nassauensis DSM 
44728]
 gi|290571360|gb|ADD44325.1| hypothetical protein Snas_4682 [Stackebrandtia nassauensis DSM 
44728]
Length=240

 Score =  167 bits (423),  Expect = 1e-39, Method: Compositional matrix adjust.
 Identities = 99/229 (44%), Positives = 148/229 (65%), Gaps = 1/229 (0%)

Query  7    ALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGT  66
            A RL+L LQ R  F++AA FS ++W A+++ +P  L+  A PY++ GD+ I+GFFF+ G 
Sbjct  11   AFRLDLRLQWRYGFVYAAAFSAVLWDAIVIILPEPLQGPAMPYLIFGDLGIVGFFFLAGA  70

Query  67   VFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGI  126
            VFFE+ ERT+ A+V+TP+RF +YLA+KLT L  +SL + +++     GL +  + L+ G 
Sbjct  71   VFFERGERTLDAVVTTPMRFGDYLASKLTTLSLLSLVLTLLITVSGVGLDFDPVTLLLGT  130

Query  127  VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIPTQGP  186
            VL +L+ LL  F S+ PF S++DW + +   +A+ L+ P+  YSGLW +P LYL PTQG 
Sbjct  131  VLCSLVCLLASFISATPFTSISDWIIPSTAVIAV-LSLPMAFYSGLWESPALYLAPTQGS  189

Query  187  LLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            LLLLG +F Q     W   YA+   ++    L   A+  F R+VV+R G
Sbjct  190  LLLLGESFGQSRFEVWDYVYAIGSSLLWIVLLTLWARRAFYRHVVKREG  238


>gi|282164304|ref|YP_003356689.1| putative ABC transporter [Methanocella paludicola SANAE]
 gi|282156618|dbj|BAI61706.1| putative ABC transporter [Methanocella paludicola SANAE]
Length=235

 Score =  138 bits (348),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 79/233 (34%), Positives = 132/233 (57%), Gaps = 3/233 (1%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            R V   RL+  LQ RQ F +A++ +  I + +L  + V       P  L+ ++ +  F+F
Sbjct  4    RYVSTARLDFRLQARQGFYYASILTTAIMILILTQVRVKDLGFFIPVFLINNMVLNTFYF  63

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            + G V FEK E T+ A+  TPL  +EYL +K   L A+ L     +  + +G G+ +LP+
Sbjct  64   MAGMVLFEKAEGTLKALSVTPLSAFEYLCSKAATLTALVLVENFAIILLTYGPGFDMLPV  123

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP  182
            +AG VL +++ +L GF +   + S++++ + +V+   I+L  P+V Y G++ NPV Y+ P
Sbjct  124  LAGTVLMSVIYVLAGFIAVAKYDSISEFIMPSVV-YVILLQLPLVDYLGIFRNPVFYIFP  182

Query  183  TQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
             Q PL+L+G+AF  + L  WQV Y + Y + C       A+  F +YV+Q  G
Sbjct  183  MQAPLVLMGSAFVHMEL--WQVAYGIAYSLACVVLAYAWARRSFKKYVIQGEG  233


>gi|147920489|ref|YP_685718.1| hypothetical protein RCIX1070 [uncultured methanogenic archaeon 
RC-I]
 gi|110621114|emb|CAJ36392.1| conserved hypothetical protein [uncultured methanogenic archaeon 
RC-I]
Length=235

 Score =  137 bits (346),  Expect = 9e-31, Method: Compositional matrix adjust.
 Identities = 82/236 (35%), Positives = 140/236 (60%), Gaps = 5/236 (2%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            + RLVP L ++   QVR  F+ A++F+ ++++A+L        PV  P  + G++ I  F
Sbjct  2    INRLVPTLLVDFRQQVRYGFIVASLFTMIVFIAMLSQFSQYGSPVFVPLFVFGNLMIGTF  61

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            FF+GG V FEK E  + A++ +PLR  EYL +K+  L A++    + +   + G GY++L
Sbjct  62   FFIGGMVLFEKGEGVLQALIVSPLRVEEYLGSKVLTLTALAFIENMAIVLAIFGTGYNVL  121

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFL-AAVIPLAIMLAPPVVHYSGLWPNPVLY  179
             L AG +L  ++ +L+GF     F S++++ + AA + +A+ML  P+V Y  ++  P++Y
Sbjct  122  LLAAGTILAAVIYVLLGFVMVSRFKSISEYLMPAAFVIVALML--PLVDYLQIFETPLVY  179

Query  180  LIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSG  235
            L P Q PLL++ AAF  V +  WQ+ Y V+Y ++  A     +K  F R+++ R G
Sbjct  180  LHPMQAPLLVMKAAF--VPVESWQLAYGVLYSLIVIAVAFVLSKRAFDRHIINRKG  233


>gi|156740972|ref|YP_001431101.1| ABC-2 type transporter [Roseiflexus castenholzii DSM 13941]
 gi|156232300|gb|ABU57083.1| ABC-2 type transporter [Roseiflexus castenholzii DSM 13941]
Length=236

 Score = 93.2 bits (230),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 76/237 (33%), Positives = 118/237 (50%), Gaps = 5/237 (2%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M R +  L  ++  Q R  F   +VF   +   VL         +  P +L+ ++ I  F
Sbjct  1    MKRFLITLYWDIVRQYRNGFYFVSVFVAALTALVLRQFDAVDWSIWWPPILLENLVINAF  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
            +F+ G V  EK E T+ A + TPLR +EYL AK+  L A+S   ++ +  IV G  ++ L
Sbjct  61   YFMAGIVLLEKGEGTLEAQIVTPLRDYEYLLAKVISLFALSALESLALILIVSGPAFNWL  120

Query  121  PLVAGIVLGTLLMLLVGFSSSLPFASVTDWFL-AAVIPLAIMLAPPVVHYSGLWPNPVLY  179
             ++ GI     +    GF     + S+T++ L +A+  L   L  P++ Y  LW +  L+
Sbjct  121  WMLLGIAGFVAMYAFYGFFVVSRYDSITEFLLPSALWTLGFSL--PLLAYFDLWQHWSLF  178

Query  180  LIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGV  236
            L P Q PLLL+ AA+    L  WQ+ YAVVY  V         +  F R+V+ + GV
Sbjct  179  LHPLQAPLLLIHAAY--APLPAWQLAYAVVYTGVWVGIGYVIGQRAFYRFVITKEGV  233


>gi|148657930|ref|YP_001278135.1| ABC-2 type transporter [Roseiflexus sp. RS-1]
 gi|148570040|gb|ABQ92185.1| ABC-2 type transporter [Roseiflexus sp. RS-1]
Length=236

 Score = 89.7 bits (221),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 73/243 (31%), Positives = 116/243 (48%), Gaps = 17/243 (6%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAE-------PYVLVG  53
            M R    L  ++  Q R  F   + F       V++ M + LR + E       P +L+ 
Sbjct  1    MKRFAHTLYWDMVRQYRNGFYLVSAF-------VVVLMALVLRQIGEVDWSIWWPPLLLE  53

Query  54   DIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVH  113
            ++ I  F+F+ G V  EK E  + A + TPLR  EYL AK+  L  +S+  ++ +  IV 
Sbjct  54   NLVINAFYFMAGIVLLEKSEGVLEAQIVTPLRDQEYLLAKVVSLFVLSVIESLALILIVS  113

Query  114  GLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLW  173
            G  ++   ++ GI     L    GF     + S+T+ FL       +  + P++ Y  LW
Sbjct  114  GPAFNWFWMLLGIAGFVALYAFYGFFVVSRYDSITE-FLMPSALWTLGFSLPLLSYFDLW  172

Query  174  PNPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQR  233
             +  LYL P Q PLLL+ AA+    L  WQ+ YA++Y  +       A +  F R+V+ +
Sbjct  173  RHWSLYLHPLQAPLLLIHAAY--TPLPAWQMAYAILYTALWVGIGAIAGQRAFYRFVIAK  230

Query  234  SGV  236
             GV
Sbjct  231  EGV  233


>gi|163848262|ref|YP_001636306.1| ABC-2 type transporter [Chloroflexus aurantiacus J-10-fl]
 gi|222526172|ref|YP_002570643.1| ABC-2 type transporter [Chloroflexus sp. Y-400-fl]
 gi|163669551|gb|ABY35917.1| ABC-2 type transporter [Chloroflexus aurantiacus J-10-fl]
 gi|222450051|gb|ACM54317.1| ABC-2 type transporter [Chloroflexus sp. Y-400-fl]
Length=244

 Score = 84.0 bits (206),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 58/188 (31%), Positives = 100/188 (54%), Gaps = 3/188 (1%)

Query  48   PYVLVGDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVV  107
            P +L+  + +  FFF+ G V  EK E  + A V TPLR WEYL AK+  L  +S   ++ 
Sbjct  48   PAILLETLVVNSFFFMAGLVLLEKGEGVLEAQVVTPLRDWEYLLAKIISLFVLSASESLA  107

Query  108  VATIVHGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVV  167
            +  +V G  ++ L ++ GI     +  L GF     + S++++ L + +   +  + P++
Sbjct  108  LILLVSGPAFNWLWMLIGIGCFVAMYTLYGFFVVARYDSISEFILPSAL-WTMGFSIPLL  166

Query  168  HYSGLWPNPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFG  227
             Y  LW + ++YL P Q PL+L+ AA+    L  WQ+ Y ++Y +V  +      +  F 
Sbjct  167  PYFDLWQHWLIYLHPLQAPLILVEAAYK--PLPAWQLWYGILYSLVWISIGWVVGRHTFY  224

Query  228  RYVVQRSG  235
            R+VV + G
Sbjct  225  RFVVTKEG  232


>gi|322367870|ref|ZP_08042440.1| putative ABC transporter [Haladaptatus paucihalophilus DX253]
 gi|320552577|gb|EFW94221.1| putative ABC transporter [Haladaptatus paucihalophilus DX253]
Length=515

 Score = 81.3 bits (199),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 57/181 (32%), Positives = 99/181 (55%), Gaps = 3/181 (1%)

Query  54   DIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVH  113
            D A++GF+F+   V +EK E  + A+V +PL    YL +K   L  +++  +  VA    
Sbjct  72   DPAVLGFYFIAVLVLYEKTEGVLQALVVSPLDSTGYLFSKAASLSTLAVSASFAVAVSEF  131

Query  114  GLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLW  173
            GL   +  L+ G++L +LL++ +GF +   F S+ ++FL+A +   I+ + P++ Y GL+
Sbjct  132  GLSLRIAVLLFGVLLSSLLIVFLGFVAVSRFDSINEFFLSAAVWGTILFS-PILGYLGLF  190

Query  174  PNPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQR  233
              P  YL+P Q  L+ + A    VSL  W+V YA  Y +V        A+  F R ++++
Sbjct  191  NTPAFYLLPVQPLLITIEAGVRSVSL--WKVIYAFAYLVVGTTLTFLWARRSFDRDILRQ  248

Query  234  S  234
             
Sbjct  249  D  249


>gi|18976950|ref|NP_578307.1| hypothetical protein PF0578 [Pyrococcus furiosus DSM 3638]
 gi|18892572|gb|AAL80702.1| hypothetical protein PF0578 [Pyrococcus furiosus DSM 3638]
Length=233

 Score = 73.6 bits (179),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 58/198 (30%), Positives = 101/198 (52%), Gaps = 12/198 (6%)

Query  8    LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV  67
            +++ LT+  R       +  G+ +  +L+  P     +  P  L+ +  ++GF FVG  +
Sbjct  6    IKVNLTIGFRSYVYPMYILIGVAYGLMLMAFPERYHSIVVPIFLLFEPGLVGFMFVGTEI  65

Query  68   FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV  123
            F EK++ TIGA+  TP+ + +Y+ AKL  L  +S+   + +  I    + GL Y    +V
Sbjct  66   FAEKKDGTIGALAVTPIEWRDYIIAKLIPLSLLSIVGGIAIMAIGTRSLSGLPY----VV  121

Query  124  AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP---VLYL  180
             G+ L +++  L+G   S  + S+ D+F+  +  L + L  P  HY G   +P   VLYL
Sbjct  122  VGVFLCSIVYTLLGIGISAKYYSLDDYFIPLLGVLIVSLL-PFAHYHGYLTHPIWKVLYL  180

Query  181  IPTQGPLLLLGAAFDQVS  198
            IP+   L    A F ++S
Sbjct  181  IPSYPALYFFKAPFVEIS  198


>gi|242398581|ref|YP_002994005.1| hypothetical protein TSIB_0591 [Thermococcus sibiricus MM 739]
 gi|242264974|gb|ACS89656.1| hypothetical protein TSIB_0591 [Thermococcus sibiricus MM 739]
Length=233

 Score = 72.4 bits (176),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 66/232 (29%), Positives = 114/232 (50%), Gaps = 14/232 (6%)

Query  8    LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV  67
            +R  L + VR       +  GL +  +L+  P    P   P  L+ +  ++GF FVG  +
Sbjct  6    IRTNLVIGVRSYVYPVYILIGLAYGLMLMVFPEQYLPTMVPIFLLFEPGLVGFMFVGTEI  65

Query  68   FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV  123
            F EK++  IGA+  TP+ +  Y+ AK  +L  +S+  A+++  I    ++GL Y    ++
Sbjct  66   FAEKKDGAIGALAVTPIEWRSYILAKTLLLSVLSIIGAILIMAIGTRSLNGLPY----VI  121

Query  124  AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPN---PVLYL  180
             G+ L +++  L+G   S  +  + D+F+  +  L I L  P VHY G   +    VLY 
Sbjct  122  VGVFLVSIVYTLLGIGISAKYHDLDDYFVPIMGVLVISLL-PFVHYHGYLTSEIWKVLYA  180

Query  181  IPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQ  232
            IP+   L    A F+++S     + ++ V  IV A      A+  F +Y V+
Sbjct  181  IPSYPGLYFFKAPFEEISRD--AMTWSAVALIVWAGIAYYIARIRFYKYAVE  230


>gi|57640628|ref|YP_183106.1| hypothetical protein TK0693 [Thermococcus kodakarensis KOD1]
 gi|57158952|dbj|BAD84882.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis 
KOD1]
Length=233

 Score = 69.7 bits (169),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 53/178 (30%), Positives = 92/178 (52%), Gaps = 12/178 (6%)

Query  28   GLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFW  87
            GL +  +LL  P    P   P  L+ +  ++GF FVG  +F EK++  I A+  TP+ + 
Sbjct  26   GLAYGLMLLAFPEQYLPTMVPIFLLFEPGLVGFMFVGTEIFAEKKDGAISALAVTPIEWR  85

Query  88   EYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLVAGIVLGTLLMLLVGFSSSLP  143
             Y+ AK  ++  +S+  A+++  +    + GL Y    ++AG+ L + +  L+G + S  
Sbjct  86   SYILAKTIIMSVLSVIGAILIMAVGTRSLDGLPY----VIAGVFLCSAVYTLLGIAISAK  141

Query  144  FASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP---VLYLIPTQGPLLLLGAAFDQVS  198
            +  + D+F+  +  L + L  P  HY G   +P   VLYL+P+   L    A F +VS
Sbjct  142  YRDLDDYFIPIMAVLVVSLL-PFAHYHGYLTHPLWKVLYLVPSYPALYFFKAPFVEVS  198


>gi|212223980|ref|YP_002307216.1| membrane protein, conserved [Thermococcus onnurineus NA1]
 gi|212008937|gb|ACJ16319.1| hypothetical membrane protein, conserved [Thermococcus onnurineus 
NA1]
Length=234

 Score = 68.6 bits (166),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 59/232 (26%), Positives = 112/232 (49%), Gaps = 14/232 (6%)

Query  8    LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV  67
            +R+E  + +R         + L +  VL   P        P  +  D  ++GF F+G ++
Sbjct  7    MRVEFKVGMRNYTYPIYFLAALAYGVVLGAFPEEYVSTMAPLFIFIDPGLLGFMFIGTSI  66

Query  68   FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIV  127
            F +K++ TIGA+  TP+ + +Y  +K  ++  ++L  A+V+  +  G    +  ++ G +
Sbjct  67   FSDKKDGTIGALSVTPMEWRDYYLSKTIIMALLALIGALVIVVVGAGFNVQIAYVLIGTL  126

Query  128  LGTLLMLLVGFSSSLPFASVTDWF--LAAVIPLAIMLAPPVVHYSGLWPNP---VLYLIP  182
            L +++  L+G + +  +  + D+F  L AV+ L+ +   P   Y GL   P   VLY+IP
Sbjct  127  LVSVVYTLLGIAIAAKYRDLDDYFVPLLAVMVLSFL---PFAAYHGLISGPWGKVLYIIP  183

Query  183  TQGPLLLLGAAFDQVSLAP--WQVGYAVVYPIVCAAGLCRAAKALFGRYVVQ  232
            +   L    A F++++     W     V++ IV        AK  F +Y V+
Sbjct  184  SYPGLYFFHAGFEEIARETLMWSGIALVIWGIVA----YNLAKIRFYKYAVE  231


>gi|344327781|gb|EGW39194.1| ABC-2 type transporter family protein [Desulfosporosinus sp. 
OT]
Length=226

 Score = 68.2 bits (165),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 44/154 (29%), Positives = 79/154 (52%), Gaps = 1/154 (0%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSL-RPVAEPYVLVGDIAIIGFF  61
            RL+ AL+ +L  Q +  F        ++++ +L  +P  L +      ++  D A++GFF
Sbjct  2    RLIAALKSDLKFQFKHGFYTVYTLIAVLYIIILQKIPGGLFKDYTLALIVFSDPAMLGFF  61

Query  62   FVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLP  121
            F+GG V  EKQ+  +  +  TPL   EY+ +K+  L  +S+  +VV+A + H  G + L 
Sbjct  62   FIGGIVMLEKQQGILDYLAVTPLSPQEYITSKVVTLALLSVSASVVIALMTHLSGVNWLL  121

Query  122  LVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAV  155
            L   I+  ++   L GF  +L   ++  +F   V
Sbjct  122  LTISILALSVFFTLYGFMVTLGCRTINQYFFKTV  155


>gi|298388108|ref|ZP_06997653.1| ABC-2 type transporter superfamily [Bacteroides sp. 1_1_14]
 gi|298259138|gb|EFI02017.1| ABC-2 type transporter superfamily [Bacteroides sp. 1_1_14]
Length=220

 Score = 64.7 bits (156),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 105/204 (52%), Gaps = 6/204 (2%)

Query  15   QVRQKFLHA--AVFS--GLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
             +RQ++ +   A+++   ++++AVL  +P+  + +    ++  D  +IG  F+G  + FE
Sbjct  10   DIRQQYKYGFYALYTLFTMVYIAVLRILPMPWKELCTTTLIFSDPVLIGLMFMGAIILFE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIVLGT  130
            K E+ + A+  +P+    Y+ +K+  +  ISL   V++A +  G+ +  + L  GI+LG+
Sbjct  70   KSEKVMQALAVSPISVHAYILSKVISIGLISLLSGVLIA-LFSGMEHSYIHLTVGIMLGS  128

Query  131  LLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIPTQGPLLLL  190
             L  LVG S S   +++ ++ L  +  L I +AP  V+  G + +  + L P+   + L+
Sbjct  129  ALFTLVGISLSAFISTMNNFMLIMISTLIISVAPISVYTMG-YKSGAMLLHPSISFIELM  187

Query  191  GAAFDQVSLAPWQVGYAVVYPIVC  214
                  +SL    +    +Y   C
Sbjct  188  SGNISVMSLMVISIWCIAMYIFSC  211


>gi|309776795|ref|ZP_07671769.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 
3_1_53]
 gi|308915543|gb|EFP61309.1| conserved hypothetical protein [Erysipelotrichaceae bacterium 
3_1_53]
Length=225

 Score = 63.2 bits (152),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 49/182 (27%), Positives = 88/182 (49%), Gaps = 4/182 (2%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            R+   ++ ++ LQ+R  F        + ++ +L  +P +       + +  D A +G FF
Sbjct  2    RISALIQEDIRLQLRHGFYALYTILTIFYILLLSAVPAAWNHTVAAFAIFFDPATMGLFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            +G  + FE+ +R   A+  +P+   EY+  KL     ISL VA V+A   H     LLP+
Sbjct  62   MGAMMLFERNQRIHQALAVSPVSPNEYICGKLASFGLISLLVAAVLALFSHS---SLLPV  118

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP  182
            +AG +L + +  L+G  ++    S+  + L +V PL  +   P++ Y   +    L L P
Sbjct  119  LAGTLLASFMFTLLGIIAASHIKSLNQFLLLSV-PLESICYIPLLAYLLGYMQNSLSLFP  177

Query  183  TQ  184
            T 
Sbjct  178  TS  179


>gi|335431149|ref|ZP_08558032.1| ABC transporter permease [Haloplasma contractile SSD-17B]
 gi|334886854|gb|EGM25199.1| ABC transporter permease [Haloplasma contractile SSD-17B]
Length=242

 Score = 62.8 bits (151),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 68/249 (28%), Positives = 117/249 (47%), Gaps = 20/249 (8%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M  L      EL    +   L A++ +  I++AVL    V    +  P ++  D+ ++  
Sbjct  1    MNNLRSLYVFELIRMKKYNILGASLLTSFIFIAVLHFSGVEDISLIFPLLIFLDVTVMSM  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLL  120
              +G T+FFEKQE T+  ++ +P+   EY+ +K+   + I+L       T+    GY +L
Sbjct  61   LLIGVTMFFEKQEGTLKTMLVSPIGKSEYIISKVLSNVTINLL------TLYTLYGYSVL  114

Query  121  --PLVAGIVLGTLLMLLVGFSSSLPFASVTDW------FLAAVIPLAIMLAPPVVH-YSG  171
               L   I+L TL ++L+    SL    +T +       L A++  ++ L  PVV  Y G
Sbjct  115  FKELEVNILLLTLYVILIASFHSLIGIYITYYKKTFTDLLVAIMTYSLALTIPVVLVYVG  174

Query  172  LWP----NPVLYLIPTQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFG  227
            +        ++YLIPTQ  +LL+ +   Q S   W++  ++ Y I+    L       F 
Sbjct  175  ILNIGLIEKMMYLIPTQASMLLMISVTPQ-SFEVWELIISLSYLIIGGGLLYYIVFRKFD  233

Query  228  RYVVQRSGV  236
             + V+ SGV
Sbjct  234  DFAVRESGV  242


>gi|225174796|ref|ZP_03728794.1| ABC-type transport system, permease component [Dethiobacter alkaliphilus 
AHT 1]
 gi|225169923|gb|EEG78719.1| ABC-type transport system, permease component [Dethiobacter alkaliphilus 
AHT 1]
Length=241

 Score = 62.0 bits (149),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 58/227 (26%), Positives = 102/227 (45%), Gaps = 9/227 (3%)

Query  17   RQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFEKQERTI  76
            +   L A+    L+W+ VL    +    +  P VL  D   +    +G T+F+EK+E TI
Sbjct  17   KYNILTASFTVALLWIGVLALTEIQDLSMILPLVLFLDATSMAMVLIGVTMFYEKEEGTI  76

Query  77   GAIVSTPLRFWEYLAAKLTVLLAISLFVAVVV---ATIVHGLGYHLLPLVAGIVLGTLLM  133
              ++ +P+   EY+ AK    +  +L    +V   A I   +  +L  L A ++L +   
Sbjct  77   KTLLVSPINKVEYILAKTATNIFSNLITLALVYAYARIFREISINLAMLAAAVILISFFH  136

Query  134  LLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP----VLYLIPTQGPLLL  189
             LVGF  +      T   +  V    +++ P ++   GL  +     +L  +PT+  +++
Sbjct  137  SLVGFVLTYSSRDFTSLLVGMVKYTVVLMVPVILEQVGLIADETVSNLLLALPTKASMVM  196

Query  190  LGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGRYVVQRSGV  236
            L AA     L  W++  A+ Y +  +A L       F  Y V+ SGV
Sbjct  197  LNAAAHTPEL--WELLLAIGYLVAASAILFVYVVRRFDEYAVKESGV  241


>gi|240102889|ref|YP_002959198.1| hypothetical protein TGAM_0832 [Thermococcus gammatolerans EJ3]
 gi|239910443|gb|ACS33334.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
Length=232

 Score = 60.5 bits (145),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 54/198 (28%), Positives = 97/198 (49%), Gaps = 12/198 (6%)

Query  8    LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV  67
            +R  + L VR       +   L +  +LL  P    P   P  L+ +  ++GF FVG  +
Sbjct  5    VRTNIVLGVRSYVYPIYLLVALAYGLMLLAFPERYLPTMVPIFLLFEPGLVGFMFVGTEI  64

Query  68   FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV  123
            F EK++  IGA+  TP+ +  Y+ AK  +L  +S+  AV++  +    ++GL Y    +V
Sbjct  65   FAEKKDGAIGALAVTPIDWRSYILAKTLLLSLLSVIGAVLIMAVGTRSLNGLPY----VV  120

Query  124  AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP---VLYL  180
             G  L +++  L+G + S  +  + D+F+  +  L + L  P  HY G        VLY 
Sbjct  121  VGTFLVSIVYTLLGIAVSAKYRDLDDYFIPILGVLVVSLL-PFAHYHGYLTGDVWKVLYA  179

Query  181  IPTQGPLLLLGAAFDQVS  198
            +P+   +    A F++++
Sbjct  180  VPSYPAIYFFKAPFEEIA  197


>gi|319934837|ref|ZP_08009282.1| hypothetical protein HMPREF9488_00113 [Coprobacillus sp. 29_1]
 gi|319810214|gb|EFW06576.1| hypothetical protein HMPREF9488_00113 [Coprobacillus sp. 29_1]
Length=226

 Score = 60.1 bits (144),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 43/164 (27%), Positives = 85/164 (52%), Gaps = 4/164 (2%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            R++  ++ ++  Q++  F    V   +++  VL+ +P + +      ++  D A +G FF
Sbjct  2    RIIHLIKGDIVFQIKYGFYFLYVVFTVLYAFVLVILPETWQETVASLMIYSDPAAMGLFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            +G  V FEK +R + ++  +P+   EY+ +K+  L  IS  VA+++A I H    +L+ +
Sbjct  62   MGAIVLFEKSQRVLNSLAVSPIHISEYILSKIISLALISEIVAMILAVISH--HQNLIMV  119

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPP  165
              G +L + +  L+G   S    S+  + L  V P+ I+   PP
Sbjct  120  FIGTLLSSFIFSLLGLIVSTKIHSLNQFILWTV-PVEILCFVPP  162


>gi|302669267|ref|YP_003832417.1| ABC transporter permease [Butyrivibrio proteoclasticus B316]
 gi|302396931|gb|ADL35835.1| ABC transporter permease protein [Butyrivibrio proteoclasticus 
B316]
Length=225

 Score = 59.7 bits (143),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 49/170 (29%), Positives = 78/170 (46%), Gaps = 4/170 (2%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            +L  Q R  F     F    +  +L  +P S +      ++  D A +G FF+G  +  E
Sbjct  10   DLRFQARYGFYLLYGFLTTFYTIILFALPESWKEKMAAILIFSDPAAMGLFFMGAIILLE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV-HGLGYHLLPLVAGIVLG  129
            K ++       TPL+   Y+ +K+  L AISL VA V+A I  H    H+L L AG  L 
Sbjct  70   KSQKVTSYFAITPLKARNYVWSKVLSLCAISLVVAAVLAIIAGHK---HILLLFAGTFLA  126

Query  130  TLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLY  179
            +++  L G   +   +S+  + L  V    I   P ++H  G+   P +Y
Sbjct  127  SVIFTLCGIIVATKISSLNQFILFTVPIEIIGFIPAILHLFGVGSFPKVY  176


>gi|341581242|ref|YP_004761734.1| hypothetical protein GQS_00770 [Thermococcus sp. 4557]
 gi|340808900|gb|AEK72057.1| hypothetical protein GQS_00770 [Thermococcus sp. 4557]
Length=232

 Score = 58.9 bits (141),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 16/200 (8%)

Query  8    LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV  67
            +R  + L VR       +   L +  +LL  P    P   P  L+ +  ++GF FVG  +
Sbjct  5    VRTNIVLGVRSYVYPIYLLVALAYGLMLLAFPERYLPTMVPIFLLFEPGLVGFMFVGTEI  64

Query  68   FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATI----VHGLGYHLLPLV  123
            F EK++  IG +  TP+ +  Y+ AK  +L  +S+  AV++  I    ++GL Y    +V
Sbjct  65   FAEKKDGAIGTLAVTPIDWRSYILAKTLLLSLLSVIGAVLIMAIGTRSLNGLPY----VV  120

Query  124  AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSG-----LWPNPVL  178
             G  L +++  L+G + S  +  + D+F+  +  + + L  P  HY G     +W   VL
Sbjct  121  VGTFLVSIVYTLLGIAVSAKYRDLDDYFIPILGVMVVSLL-PFAHYHGYLTGEVW--KVL  177

Query  179  YLIPTQGPLLLLGAAFDQVS  198
            Y +P+   +    A F++++
Sbjct  178  YAVPSYPAIYFFKAPFEEIT  197


>gi|297560640|ref|YP_003679614.1| hypothetical protein Ndas_1679 [Nocardiopsis dassonvillei subsp. 
dassonvillei DSM 43111]
 gi|296845088|gb|ADH67108.1| hypothetical protein Ndas_1679 [Nocardiopsis dassonvillei subsp. 
dassonvillei DSM 43111]
Length=522

 Score = 58.2 bits (139),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 79/235 (34%), Positives = 117/235 (50%), Gaps = 7/235 (2%)

Query  1    MTRLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGF  60
            M RL+ A  LE  + +R   +  A   G +W  VLL +P         Y+L  D A  G 
Sbjct  1    MNRLLAATALESRVGLRYGVVPVAAALGAVWTLVLLAVPAEAAGTVASYLLFLDTAGFGA  60

Query  61   FFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAV-VVATIVHG----L  115
             F    + FE+ E T  A+  TPLR  E +AA+L VL A++L +AV ++A  + G    L
Sbjct  61   LFAAALLLFERTEGTRSALTVTPLRAGEGVAARLAVLTALTLLIAVPMLAAALRGRFADL  120

Query  116  GYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPN  175
               L P++ G+ L  LL+L V  +       ++ + LAA + +A ++  P+VH SG+  +
Sbjct  121  AQALPPVLGGVALTCLLLLTVCLAVGARSRDLSGFLLAAPLTVAPLVLVPLVHVSGILEH  180

Query  176  PVLYLIPTQ--GPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALFGR  228
            P+LY +PT     L+ LGAA      AP  +    VY +  AA    AA    GR
Sbjct  181  PLLYAVPTTAGADLIRLGAAPGSPDAAPAALVAGTVYAVAWAATGVVAASRAVGR  235


>gi|150389288|ref|YP_001319337.1| ABC-2 type transporter [Alkaliphilus metalliredigens QYMF]
 gi|149949150|gb|ABR47678.1| ABC-2 type transporter [Alkaliphilus metalliredigens QYMF]
Length=230

 Score = 56.6 bits (135),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 63/229 (28%), Positives = 110/229 (49%), Gaps = 8/229 (3%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            R++ AL+ ++  Q +Q F    V   L+++ ++   P      A P V+  D + IGFFF
Sbjct  2    RILNALKADMRFQFKQGFYFVYVILTLMYMILISQFPHGFTSYAVPIVIFTDPSFIGFFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            +GG V  EK +  +  +V TPLR  EYL +K+  L  ++      +A + +   ++ + L
Sbjct  62   IGGIVMLEKVQGILQYLVVTPLRPREYLISKVISLTLLAEVAGFAIAYVTYKAPFNWILL  121

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNP-VLYLI  181
              GI L      L GF  +    ++ ++F+  +IP  + L  P ++Y   +PN  +L L+
Sbjct  122  FIGIFLTAAFFTLYGFVVAASCNTINEYFI-KMIPYMLGLMIPTLYYFT-YPNVWILRLL  179

Query  182  PTQGPLLLLGAAFDQVSLAPW--QVGYAVVYPIVCAAGLCRAAKALFGR  228
            P+     L+  AF+ +        +GY V+  IV    L R  K    +
Sbjct  180  PSVAGFNLVNGAFNGIRFLEMAAYIGYLVLINIVT---LIRVEKYFIKK  225


>gi|325970505|ref|YP_004246696.1| ABC transporter permease [Spirochaeta sp. Buddy]
 gi|324025743|gb|ADY12502.1| putative ABC transporter, permease protein [Spirochaeta sp. Buddy]
Length=227

 Score = 56.2 bits (134),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 55/224 (25%), Positives = 106/224 (48%), Gaps = 6/224 (2%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            R V  L  ++  Q +  F        L++  +L  +P + +      +++ D A++G FF
Sbjct  2    RFVALLVGDIRFQYKYGFYFLYGIFSLMYSVILQLLPEAWKANVSVLMVLSDPAMLGLFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            +G  + FEK+E T+ +I  +P   +EY+ +KL  L  IS  VA+++A+ V G+  H +  
Sbjct  62   MGAILQFEKEEHTLHSIAVSPATVYEYMLSKLVSLGIISTLVALLLAS-VGGVLDHPIRF  120

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP  182
               + LG+ L   +G   +    S  + FL A  P  +++  P + Y   W +   +L+ 
Sbjct  121  CIAVFLGSCLFSSLGLVLATK-TSTLNQFLIATAPCELVITVPAILYL-FWDSSSWFLLH  178

Query  183  TQGPLLLLGAAFDQVSLAPWQVGYAVVYPIVCAAGLCRAAKALF  226
                L+ L  + + +  A + +   +V+ ++C      A K  F
Sbjct  179  PGSSLITLFLSDEHILFAFFSL---LVWTLLCVWLAIYATKKFF  219


>gi|225018217|ref|ZP_03707409.1| hypothetical protein CLOSTMETH_02155 [Clostridium methylpentosum 
DSM 5476]
 gi|224949014|gb|EEG30223.1| hypothetical protein CLOSTMETH_02155 [Clostridium methylpentosum 
DSM 5476]
Length=227

 Score = 55.8 bits (133),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 35/116 (31%), Positives = 68/116 (59%), Gaps = 4/116 (3%)

Query  53   GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV  112
             D A +G FF+G  V  EK ++ + A+V +P++  EY+ +K   L+AIS  +A+++  +V
Sbjct  52   SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKISEYILSKTVALIAISTVIALILG-VV  110

Query  113  HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVV  167
             G   HLL +  G  L + +  ++G  ++   +++ + FL  ++P+ I+   PP+V
Sbjct  111  SG-SNHLLGITVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIV  164


>gi|254977267|ref|ZP_05273739.1| putative ABC transporter, permease protein [Clostridium difficile 
QCD-66c26]
 gi|255094596|ref|ZP_05324074.1| putative ABC transporter, permease protein [Clostridium difficile 
CIP 107932]
 gi|255316352|ref|ZP_05357935.1| putative ABC transporter, permease protein [Clostridium difficile 
QCD-76w55]
 6 more sequence titles
 Length=227

 Score = 55.5 bits (132),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 36/116 (32%), Positives = 67/116 (58%), Gaps = 4/116 (3%)

Query  53   GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV  112
             D A +G FF+G  V  EK ++ + A+V +P++  EY+ +K   L+AIS  +AV++   V
Sbjct  52   SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKVSEYILSKTIALIAISTIIAVILG-FV  110

Query  113  HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVV  167
             G   HLL +  G  L + +  ++G  ++   +++ + FL  ++P+ I+   PP+V
Sbjct  111  SG-SNHLLGIAVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIV  164


>gi|255306173|ref|ZP_05350345.1| putative ABC transporter, permease protein [Clostridium difficile 
ATCC 43255]
Length=227

 Score = 55.1 bits (131),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 33/116 (29%), Positives = 66/116 (57%), Gaps = 4/116 (3%)

Query  53   GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV  112
             D A +G FF+G  V  EK ++ + A+V +P++  EY+ +K   L+AIS  +A+++  + 
Sbjct  52   SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKVSEYILSKTIALIAISTVIALILGVVS  111

Query  113  HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVV  167
                 HLL +  G  L + +  ++G  ++   +++ + FL  ++P+ I+   PP+V
Sbjct  112  D--SNHLLGITVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIV  164


>gi|310829074|ref|YP_003961431.1| hypothetical protein ELI_3509 [Eubacterium limosum KIST612]
 gi|308740808|gb|ADO38468.1| hypothetical protein ELI_3509 [Eubacterium limosum KIST612]
Length=224

 Score = 55.1 bits (131),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 43/173 (25%), Positives = 83/173 (48%), Gaps = 4/173 (2%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            R+V  L+ ++  Q +  F    +   LI+  VL  +P + +      ++  D A +G FF
Sbjct  2    RIVCLLKGDIRQQWKYGFYGLYLILTLIYAGVLSILPSNWKVTGTALIIFSDPAALGLFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            +G  +  E+ +R + ++  +P+R  EY+ +K   L  IS   A V+  +    G   LPL
Sbjct  62   MGAVILLERSQRVLESLAVSPVRPEEYIVSKALSLALISTLAAAVLGVVG---GSPSLPL  118

Query  123  V-AGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWP  174
            + AG   G +L  +VG ++    +++  + L  V    ++  P ++  +G  P
Sbjct  119  LCAGTFTGAMLFSMVGLAAGTSISTINQFILVTVPIELVIFGPAILWVAGYRP  171


>gi|345022747|ref|ZP_08786360.1| ABC transporter permease [Ornithinibacillus sp. TW25]
Length=245

 Score = 54.7 bits (130),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 42/186 (23%), Positives = 86/186 (47%), Gaps = 1/186 (0%)

Query  8    LRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTV  67
            ++ ++  Q R  F +   F   I++ VLL +P+  R +   +++  D   +GFFFVG  V
Sbjct  6    IKQDVRFQFRHGFYYVYAFVTAIYITVLLLIPMEFRSLWGIFIVFTDPGTLGFFFVGAIV  65

Query  68   FFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIV  127
              E+ ++ +  +  TP++   YL +K+  L  I+   ++ +          +  L   I+
Sbjct  66   MLERNQQLLTYLFITPVKLKSYLWSKIVSLTLIAWLTSLFIVYSTLDTTVSVTFLSIAIL  125

Query  128  LGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIPTQGPL  187
            L +      G   ++   S+  +   A++ + IM   PV++Y       +  ++P+   L
Sbjct  126  LCSFFFTSCGLVIAVDSPSMNHFMFRAIVSM-IMFYIPVLNYLDWISFRLFEIMPSYSAL  184

Query  188  LLLGAA  193
            +LL  A
Sbjct  185  ILLEYA  190


>gi|266623835|ref|ZP_06116770.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288864349|gb|EFC96647.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length=227

 Score = 53.9 bits (128),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 36/124 (30%), Positives = 69/124 (56%), Gaps = 4/124 (3%)

Query  53   GDIAIIGFFFVGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIV  112
             D A +G FF+G  V  EK ++ + A+V +P++  EY+ +K   L+AIS  +A+++  +V
Sbjct  52   SDPAAMGLFFMGAIVLLEKSQKVLNAMVVSPVKISEYILSKTVALIAISTVIALILG-LV  110

Query  113  HGLGYHLLPLVAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVHYSG  171
             G   HLL +  G  L + +  ++G  ++   +++ + FL  ++P+ I+   PP+     
Sbjct  111  SG-SNHLLGIAVGTALTSAIFTMLGIIAATKISNL-NQFLIVIMPIEIVCFVPPIAGLFV  168

Query  172  LWPN  175
              PN
Sbjct  169  TLPN  172


>gi|89893659|ref|YP_517146.1| hypothetical protein DSY0913 [Desulfitobacterium hafniense Y51]
 gi|89333107|dbj|BAE82702.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=206

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 47/180 (27%), Positives = 85/180 (48%), Gaps = 1/180 (0%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            RL  A   ++  Q +  F     F  +++ A+L  +P   + +    +L+ D A +GFFF
Sbjct  2    RLFMATVHDIRYQAKYGFYFLYAFITVLYCAILYFLPDQHKAIGASLILLTDPATLGFFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            VGG    EK E        +PL+  EY+ AK   L  IS   A  +    H        L
Sbjct  62   VGGIWLLEKDEGIHRFYGISPLKPIEYILAKGLSLAMISTLSAFFIVRFSHPGSADYPLL  121

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP  182
            ++ I +G+ +  L+G + +  +AS  + ++   +P+ ++L  P +  +    +PVL ++P
Sbjct  122  LSSIFVGSCIFTLLGLAMA-TYASSVNSYMVRGVPVGMILILPPLLVTFQISHPVLEIMP  180


>gi|255306779|ref|ZP_05350950.1| putative ABC transporter, permease protein [Clostridium difficile 
ATCC 43255]
Length=227

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 43/176 (25%), Positives = 86/176 (49%), Gaps = 19/176 (10%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            ++  Q +  F    +F  +I++ ++   P  +R      ++  D A +G FF+G  V  E
Sbjct  10   DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI  126
            K +R + ++  +P++  EY+ +K+  L  IS  VA+ +A I   L   ++  +    + I
Sbjct  70   KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTIGTFFSSI  128

Query  127  VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP  174
            +   L ++L   +SSL      + F+   IP+ I+   PP+++       Y+ L+P
Sbjct  129  IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP  178


>gi|254975390|ref|ZP_05271862.1| putative ABC transporter, permease protein [Clostridium difficile 
QCD-66c26]
 gi|255092778|ref|ZP_05322256.1| putative ABC transporter, permease protein [Clostridium difficile 
CIP 107932]
 gi|255314519|ref|ZP_05356102.1| putative ABC transporter, permease protein [Clostridium difficile 
QCD-76w55]
 7 more sequence titles
 Length=225

 Score = 53.5 bits (127),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 43/176 (25%), Positives = 86/176 (49%), Gaps = 19/176 (10%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            ++  Q +  F    +F  +I++ ++   P  +R      ++  D A +G FF+G  V  E
Sbjct  10   DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI  126
            K +R + ++  +P++  EY+ +K+  L  IS  VA+ +A I   L   ++  +    + I
Sbjct  70   KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTIGTFFSSI  128

Query  127  VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP  174
            +   L ++L   +SSL      + F+   IP+ I+   PP+++       Y+ L+P
Sbjct  129  IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP  178


>gi|255100889|ref|ZP_05329866.1| putative ABC transporter, permease protein [Clostridium difficile 
QCD-63q42]
Length=227

 Score = 52.8 bits (125),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 43/176 (25%), Positives = 86/176 (49%), Gaps = 19/176 (10%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            ++  Q +  F    +F  +I++ ++   P  +R      ++  D A +G FF+G  V  E
Sbjct  10   DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIVIIMIYSDPAAMGLFFMGAIVLLE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI  126
            K +R + ++  +P++  EY+ +K+  L  IS  VA+ +A I   L   ++  +    + I
Sbjct  70   KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTIGTFFSSI  128

Query  127  VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP  174
            +   L ++L   +SSL      + F+   IP+ I+   PP+++       Y+ L+P
Sbjct  129  IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP  178


>gi|126699361|ref|YP_001088258.1| ABC transporter permease [Clostridium difficile 630]
 gi|115250798|emb|CAJ68622.1| ABC-type transport system, multidrug-family permease [Clostridium 
difficile]
Length=227

 Score = 52.8 bits (125),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 42/172 (25%), Positives = 85/172 (50%), Gaps = 11/172 (6%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            ++  Q +  F    +F  +I++ ++   P  +R      ++  D A +G FF+G  V  E
Sbjct  10   DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIVLGT  130
            K +R + ++  +P++  EY+ +K+  L  IS  VA+ +A I   L   ++  + G    +
Sbjct  70   KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMFIA-ITLNLDNIIISTI-GTFFSS  127

Query  131  LLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP  174
            ++  L+G   +   AS  + F+   IP+ I+   PP+++       Y+ L+P
Sbjct  128  IIFSLLGLIIASK-ASSLNQFIVLSIPIEIICFIPPILNVLLDTKSYANLYP  178


>gi|219668040|ref|YP_002458475.1| ABC transporter [Desulfitobacterium hafniense DCB-2]
 gi|219538300|gb|ACL20039.1| ABC-2 type transporter [Desulfitobacterium hafniense DCB-2]
Length=234

 Score = 52.4 bits (124),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 46/180 (26%), Positives = 85/180 (48%), Gaps = 1/180 (0%)

Query  3    RLVPALRLELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFF  62
            RL  A   ++  Q +  F     F  +++ A+L  +P   + +    +L+ D A +GFFF
Sbjct  2    RLFMATVHDIRYQAKYGFYFLYAFITVLYCAILYFLPDQHKAIGASLILLTDPATLGFFF  61

Query  63   VGGTVFFEKQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPL  122
            VGG    EK E        +PL+  EY+ AK   L  IS   A  +    H        L
Sbjct  62   VGGIWLLEKDEGIHRFYGISPLKPIEYILAKGLSLAMISTLSAFFIVRFSHPGSADYPLL  121

Query  123  VAGIVLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYSGLWPNPVLYLIP  182
            ++ I +G+ +  L+G + +  +A+  + ++   +P+ ++L  P +  +    +PVL ++P
Sbjct  122  LSSIFVGSCIFTLLGLAMA-TYANSVNSYMVKGVPVGMILILPPLLVAFQISHPVLEIMP  180


>gi|255655773|ref|ZP_05401182.1| putative ABC transporter, permease protein [Clostridium difficile 
QCD-23m63]
 gi|296450992|ref|ZP_06892739.1| ABC superfamily ATP binding cassette transporter, permease protein 
[Clostridium difficile NAP08]
 gi|296879042|ref|ZP_06903038.1| ABC superfamily ATP binding cassette transporter, permease protein 
[Clostridium difficile NAP07]
 gi|296260210|gb|EFH07058.1| ABC superfamily ATP binding cassette transporter, permease protein 
[Clostridium difficile NAP08]
 gi|296429915|gb|EFH15766.1| ABC superfamily ATP binding cassette transporter, permease protein 
[Clostridium difficile NAP07]
Length=227

 Score = 52.4 bits (124),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 42/176 (24%), Positives = 86/176 (49%), Gaps = 19/176 (10%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            ++  Q +  F    +F  +I++ ++   P  +R      ++  D A +G FF+G  V  E
Sbjct  10   DIKFQFKYGFYFLYLFLSIIYICIINVFPTFMREKIAIIMIYSDPAAMGLFFMGAIVLLE  69

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLV----AGI  126
            K +R + ++  +P++  EY+ +K+  L  IS  VA+++A I   L   ++  +    + I
Sbjct  70   KSQRVLNSLAVSPVKVSEYILSKVISLGVISSIVAMLIA-ITLNLDNIIISTIGTFFSSI  128

Query  127  VLGTLLMLLVGFSSSLPFASVTDWFLAAVIPLAIM-LAPPVVH-------YSGLWP  174
            +   L ++L   +SSL      + F+   IP+ I+   PP+++       Y+  +P
Sbjct  129  IFSLLGLILASKASSL------NQFIVLSIPIEIICFIPPILNVLVDTKSYANFYP  178


>gi|332298445|ref|YP_004440367.1| ABC transporter permease [Treponema brennaborense DSM 12168]
 gi|332181548|gb|AEE17236.1| ABC transporter permease [Treponema brennaborense DSM 12168]
Length=237

 Score = 51.6 bits (122),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (46%), Gaps = 2/160 (1%)

Query  11   ELTLQVRQKFLHAAVFSGLIWLAVLLPMPVSLRPVAEPYVLVGDIAIIGFFFVGGTVFFE  70
            ++  Q+R  F     F  L++ A++  +P S R  A    +  D A +G FF+G  + FE
Sbjct  11   DVRFQIRYGFYVLYAFFTLLYTAIVAALPESWRYEAAVVCIFSDPATLGLFFMGAVILFE  70

Query  71   KQERTIGAIVSTPLRFWEYLAAKLTVLLAISLFVAVVVATIVHGLGYHLLPLVAGIVLGT  130
            K +R + +I   P+    Y+AAK+     +SL V   +  +  G   + +   AG++L +
Sbjct  71   KSQRVLDSINVAPVSKTAYVAAKVCSFAVVSLAVGFAIG-LASGAVRNAVTFAAGLLLSS  129

Query  131  LLMLLVGFSSSLPFASVTDWFLAAVIPLAIMLAPPVVHYS  170
             L        +    S+ + F+   +P+ I    P + Y 
Sbjct  130  SLFTFAALCVASRCGSL-NAFVLGTVPVEIAGTVPGILYQ  168



Lambda     K      H
   0.331    0.145    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 322714888716


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40