BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2689c Length=405 Score E Sequences producing significant alignments: (Bits) Value gi|15609826|ref|NP_217205.1| hypothetical protein Rv2689c [Mycob... 806 0.0 gi|15842227|ref|NP_337264.1| hypothetical protein MT2763 [Mycoba... 806 0.0 gi|339632701|ref|YP_004724343.1| hypothetical protein MAF_26930 ... 805 0.0 gi|254551745|ref|ZP_05142192.1| hypothetical protein Mtube_15022... 803 0.0 gi|340627690|ref|YP_004746142.1| hypothetical protein MCAN_27151... 800 0.0 gi|308373477|ref|ZP_07432477.2| conserved alanine, valine and gl... 791 0.0 gi|289570865|ref|ZP_06451092.1| conserved alanine, valine and gl... 729 0.0 gi|342858444|ref|ZP_08715099.1| RNA methyltransferase [Mycobacte... 598 4e-169 gi|118465758|ref|YP_882757.1| RNA methyltransferase [Mycobacteri... 575 5e-162 gi|254776021|ref|ZP_05217537.1| RNA methyltransferase [Mycobacte... 573 2e-161 gi|336458815|gb|EGO37772.1| SAM-dependent methyltransferase, tRN... 570 1e-160 gi|183982039|ref|YP_001850330.1| SAM-dependent methyltransferase... 560 2e-157 gi|240169709|ref|ZP_04748368.1| SAM-dependent methyltransferase ... 557 1e-156 gi|118618652|ref|YP_906984.1| SAM-dependent methyltransferase [M... 554 8e-156 gi|118473429|ref|YP_887104.1| RNA methyltransferase [Mycobacteri... 531 9e-149 gi|333991071|ref|YP_004523685.1| SAM-dependent methyltransferase... 520 3e-145 gi|126434774|ref|YP_001070465.1| deoxyribonuclease [Mycobacteriu... 493 2e-137 gi|108799166|ref|YP_639363.1| deoxyribonuclease [Mycobacterium s... 493 2e-137 gi|315444837|ref|YP_004077716.1| SAM-dependent methyltransferase... 484 1e-134 gi|41408904|ref|NP_961740.1| hypothetical protein MAP2806c [Myco... 481 1e-133 gi|145224506|ref|YP_001135184.1| (Uracil-5)-methyltransferase [M... 475 5e-132 gi|120403465|ref|YP_953294.1| (Uracil-5)-methyltransferase [Myco... 470 2e-130 gi|169630075|ref|YP_001703724.1| hypothetical protein MAB_2992c ... 431 9e-119 gi|296171886|ref|ZP_06852966.1| SAM-dependent methyltransferase ... 402 6e-110 gi|317506803|ref|ZP_07964577.1| TRAM domain-containing protein [... 388 8e-106 gi|296393670|ref|YP_003658554.1| deoxyribonuclease/rho motif-rel... 385 6e-105 gi|111023795|ref|YP_706767.1| RNA methyltransferase [Rhodococcus... 354 1e-95 gi|312139448|ref|YP_004006784.1| (uracil-5-)-methyltransferase [... 350 3e-94 gi|325672664|ref|ZP_08152360.1| 23S rRNA methyltransferase/RumA ... 348 1e-93 gi|226366231|ref|YP_002784014.1| RNA methyltransferase [Rhodococ... 327 3e-87 gi|229491254|ref|ZP_04385080.1| tram domain protein [Rhodococcus... 321 2e-85 gi|226306318|ref|YP_002766278.1| RNA methyltransferase [Rhodococ... 317 3e-84 gi|54025714|ref|YP_119956.1| putative RNA methyltransferase [Noc... 312 6e-83 gi|333919442|ref|YP_004493023.1| putative RNA methyltransferase ... 305 8e-81 gi|302525757|ref|ZP_07278099.1| 23S rRNA (uracil-5-)-methyltrans... 278 9e-73 gi|256375660|ref|YP_003099320.1| TRAM domain-containing protein ... 274 2e-71 gi|257056412|ref|YP_003134244.1| 23S rRNA (uracil-5-)-methyltran... 273 6e-71 gi|300784521|ref|YP_003764812.1| 23S rRNA methyltransferase [Amy... 270 2e-70 gi|38233983|ref|NP_939750.1| hypothetical protein DIP1398 [Coryn... 268 1e-69 gi|255325118|ref|ZP_05366224.1| TRAM domain protein [Corynebacte... 264 2e-68 gi|296270254|ref|YP_003652886.1| deoxyribonuclease/rho motif-rel... 264 2e-68 gi|227549133|ref|ZP_03979182.1| RNA methyltransferase [Corynebac... 259 5e-67 gi|331696878|ref|YP_004333117.1| deoxyribonuclease/rho motif-rel... 252 8e-65 gi|305681414|ref|ZP_07404221.1| TRAM domain protein [Corynebacte... 249 8e-64 gi|343924644|ref|ZP_08764188.1| putative RNA methyltransferase [... 247 2e-63 gi|271968013|ref|YP_003342209.1| 23S rRNA (uracil-5-)-methyltran... 246 7e-63 gi|296117766|ref|ZP_06836350.1| SAM-dependent methyltransferase ... 245 1e-62 gi|19553107|ref|NP_601109.1| SAM-dependent methyltransferase [Co... 244 1e-62 gi|311739580|ref|ZP_07713415.1| SAM-dependent methyltransferase ... 244 2e-62 gi|225021274|ref|ZP_03710466.1| hypothetical protein CORMATOL_01... 244 2e-62 >gi|15609826|ref|NP_217205.1| hypothetical protein Rv2689c [Mycobacterium tuberculosis H37Rv] gi|31793861|ref|NP_856354.1| hypothetical protein Mb2708c [Mycobacterium bovis AF2122/97] gi|121638564|ref|YP_978788.1| hypothetical protein BCG_2702c [Mycobacterium bovis BCG str. Pasteur 1173P2] 65 more sequence titles Length=405 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/405 (99%), Positives = 405/405 (100%), Gaps = 0/405 (0%) Query 1 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 +TRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA Sbjct 1 MTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 Query 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA Sbjct 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 Query 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE Sbjct 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 Query 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH Sbjct 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 Query 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA Sbjct 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 Query 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG Sbjct 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 Query 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV Sbjct 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 >gi|15842227|ref|NP_337264.1| hypothetical protein MT2763 [Mycobacterium tuberculosis CDC1551] gi|254232795|ref|ZP_04926122.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis C] gi|13882517|gb|AAK47078.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601854|gb|EAY60864.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis C] Length=434 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/405 (100%), Positives = 405/405 (100%), Gaps = 0/405 (0%) Query 1 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA Sbjct 30 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 89 Query 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA Sbjct 90 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 149 Query 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE Sbjct 150 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 209 Query 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH Sbjct 210 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 269 Query 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA Sbjct 270 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 329 Query 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG Sbjct 330 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 389 Query 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV Sbjct 390 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 434 >gi|339632701|ref|YP_004724343.1| hypothetical protein MAF_26930 [Mycobacterium africanum GM041182] gi|339332057|emb|CCC27763.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium africanum GM041182] Length=405 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/405 (99%), Positives = 405/405 (100%), Gaps = 0/405 (0%) Query 1 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 +TRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA Sbjct 1 MTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 Query 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA Sbjct 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 Query 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE Sbjct 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 Query 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH Sbjct 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 Query 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA Sbjct 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 Query 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG Sbjct 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 Query 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 CEAASFARDIGLYRGHGYA+EKIKVFDAFPLTHYVECVALLTRKV Sbjct 361 CEAASFARDIGLYRGHGYALEKIKVFDAFPLTHYVECVALLTRKV 405 >gi|254551745|ref|ZP_05142192.1| hypothetical protein Mtube_15022 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289762860|ref|ZP_06522238.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis GM 1503] gi|289710366|gb|EFD74382.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis GM 1503] Length=405 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%) Query 1 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 +TRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA Sbjct 1 MTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 Query 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAART KAQVVANQLERLGRHSWQGEA Sbjct 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTRKAQVVANQLERLGRHSWQGEA 120 Query 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE Sbjct 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 Query 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH Sbjct 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 Query 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA Sbjct 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 Query 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG Sbjct 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 Query 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV Sbjct 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 >gi|340627690|ref|YP_004746142.1| hypothetical protein MCAN_27151 [Mycobacterium canettii CIPT 140010059] gi|340005880|emb|CCC45046.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium canettii CIPT 140010059] Length=405 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%) Query 1 VTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 +TRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA Sbjct 1 MTRAGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEA 60 Query 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA Sbjct 61 FEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA 120 Query 121 QPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 QPLSDAGPTGWR RVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE Sbjct 121 QPLSDAGPTGWRTRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPE 180 Query 181 AQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 AQL+VALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH Sbjct 181 AQLHVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 Query 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAA 300 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSR+ASGAA Sbjct 241 RDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRVASGAA 300 Query 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG Sbjct 301 RAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIG 360 Query 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV Sbjct 361 CEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 >gi|308373477|ref|ZP_07432477.2| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu005] gi|308337510|gb|EFP26361.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu005] Length=397 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/397 (99%), Positives = 397/397 (100%), Gaps = 0/397 (0%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 68 +NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP Sbjct 1 MNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 60 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP Sbjct 61 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 120 Query 129 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD 188 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD Sbjct 121 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD 180 Query 189 DDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYS 248 DDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYS Sbjct 181 DDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYS 240 Query 249 DLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLP 308 DLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLP Sbjct 241 DLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLP 300 Query 309 QVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFAR 368 QVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFAR Sbjct 301 QVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFAR 360 Query 369 DIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 405 DIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV Sbjct 361 DIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRKV 397 >gi|289570865|ref|ZP_06451092.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T17] gi|289544619|gb|EFD48267.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T17] Length=382 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/372 (99%), Positives = 368/372 (99%), Gaps = 0/372 (0%) Query 34 FVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAP 93 F +PGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAP Sbjct 11 FRPLCVPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAP 70 Query 94 EAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSG 153 EAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSG Sbjct 71 EAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSG 130 Query 154 ELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDDGERHVVCSVRQGPRNRTRTVTNV 213 ELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDDGERHVVCSVRQGPRNRTRTVTNV Sbjct 131 ELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDDGERHVVCSVRQGPRNRTRTVTNV 190 Query 214 VEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVF 273 VEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVF Sbjct 191 VEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVF 250 Query 274 AAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVL 333 AAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVL Sbjct 251 AAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVL 310 Query 334 DPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTH 393 DPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTH Sbjct 311 DPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTH 370 Query 394 YVECVALLTRKV 405 YVECVALLTRKV Sbjct 371 YVECVALLTRKV 382 >gi|342858444|ref|ZP_08715099.1| RNA methyltransferase [Mycobacterium colombiense CECT 3035] gi|342134148|gb|EGT87328.1| RNA methyltransferase [Mycobacterium colombiense CECT 3035] Length=410 Score = 598 bits (1543), Expect = 4e-169, Method: Compositional matrix adjust. Identities = 301/397 (76%), Positives = 332/397 (84%), Gaps = 7/397 (1%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 LTL T APANGGSCVAHHEGRVVFVRYALPGERVR RVTA RGSYWHAE EVID +P Sbjct 18 ELTLTTDAPANGGSCVAHHEGRVVFVRYALPGERVRVRVTADRGSYWHAEVIEVIDAAPG 77 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 R+ SLC IAG DGAGCCDLAFAAPE ARTLKAQVVANQLERLGRH+W+GEA+PL D+ PT Sbjct 78 RVASLCPIAGVDGAGCCDLAFAAPEVARTLKAQVVANQLERLGRHAWRGEAEPLGDSAPT 137 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRLDVG DRRPGFHRYHS +LVTDL C QLP GMLDG+ +WPP AQL+VA+DD Sbjct 138 GWRTRVRLDVGPDRRPGFHRYHSDDLVTDLRCAQLPAGMLDGIADLEWPPAAQLHVAVDD 197 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 DG RHVV ++RQG +T T VVEG Y A QRV RSW+VPVTAFWQAHRDAA VYS+ Sbjct 198 DGARHVVRTLRQG----RQTATKVVEGRYEAVQRVAGRSWQVPVTAFWQAHRDAAGVYSE 253 Query 250 LIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQ 309 LIADWAQ GM AWDLYGGAGVFAAVLGEAVG SGRVL+VDTSR ++ AAR AL DL Q Sbjct 254 LIADWAQLGAGMRAWDLYGGAGVFAAVLGEAVGPSGRVLSVDTSRASTRAARVALADLTQ 313 Query 310 VEVVTGSVRRVLAVQ---PAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASF 366 V +VT SVRR LA Q + AD+AVLDPPR+GAGRE++DLLA A +PR++HIGCEAASF Sbjct 314 VHIVTDSVRRALAAQRGRASRADVAVLDPPRAGAGREIIDLLAAADIPRVVHIGCEAASF 373 Query 367 ARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 ARDIG Y GHGY VEKI+VFDAFPLTH+ EC+ALLTR Sbjct 374 ARDIGTYLGHGYTVEKIRVFDAFPLTHHTECIALLTR 410 >gi|118465758|ref|YP_882757.1| RNA methyltransferase [Mycobacterium avium 104] gi|118167045|gb|ABK67942.1| putative RNA methyltransferase [Mycobacterium avium 104] Length=395 Score = 575 bits (1482), Expect = 5e-162, Method: Compositional matrix adjust. Identities = 301/397 (76%), Positives = 328/397 (83%), Gaps = 7/397 (1%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 LTL TG+PANGGSCVAHHEGRVVFVRYALPGERVR RVTA RGSYWHAE +VI+ + Sbjct 3 ELTLTTGSPANGGSCVAHHEGRVVFVRYALPGERVRVRVTADRGSYWHAEVLDVIEAAYG 62 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 RI SLC IAG DGAGCCDLAF PEAAR LKA VVANQLERLG H W GEA+PL + GPT Sbjct 63 RIESLCPIAGVDGAGCCDLAFVRPEAARALKAAVVANQLERLGGHRWAGEAEPLGNTGPT 122 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRLDVGADRRPGFHRYHS ELVTDL C QLP GMLDG+ WP AQL+VA+DD Sbjct 123 GWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPGMLDGIAETQWPSAAQLHVAVDD 182 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 DG RHVV ++RQG RT T V+EG Y A QRV R WRVPVTAFWQAHRDAAA Y Sbjct 183 DGARHVVRTLRQG----RRTATKVIEGRYEAVQRVSGRRWRVPVTAFWQAHRDAAATYRA 238 Query 250 LIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQ 309 L+ DWAQP GMTAWDLYGGAGVFAA LGEAVGESGRVL+VDTSR ++ AARAAL DLPQ Sbjct 239 LVLDWAQPGAGMTAWDLYGGAGVFAAALGEAVGESGRVLSVDTSRASTRAARAALADLPQ 298 Query 310 VEVVTGSVRRVLAVQ--PA-GADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASF 366 V+VVT SVRR LA Q PA AD+AVLDPPR+GAGREV+D L+ AGVPR++HIGCEAASF Sbjct 299 VQVVTDSVRRALAAQRTPALQADVAVLDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASF 358 Query 367 ARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 ARD+G+Y GHGY VEKI+VFDAFPLTH+ ECVALLTR Sbjct 359 ARDMGIYLGHGYTVEKIRVFDAFPLTHHSECVALLTR 395 >gi|254776021|ref|ZP_05217537.1| RNA methyltransferase [Mycobacterium avium subsp. avium ATCC 25291] Length=395 Score = 573 bits (1477), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 300/397 (76%), Positives = 327/397 (83%), Gaps = 7/397 (1%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 LTL TG+PANGGSCVAHHEGRVVFVRYALPGERVR RVTA RGSYWHAE +VI+ + Sbjct 3 ELTLTTGSPANGGSCVAHHEGRVVFVRYALPGERVRVRVTADRGSYWHAEVLDVIEAADG 62 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 RI SLC IAG DGAGCCDLAF PEAAR LKA VVANQLERLG H W GEA+PL + GPT Sbjct 63 RIESLCPIAGVDGAGCCDLAFVRPEAARALKAAVVANQLERLGGHRWAGEAEPLGNTGPT 122 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRLDVGADRRPGFHRYHS ELVTDL C QLP GMLDG+ WP AQL+VA+DD Sbjct 123 GWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPGMLDGIAETQWPSAAQLHVAVDD 182 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 DG RHVV ++RQG RT T V+EG Y A QRV R WRVPVTAFWQAHRDAAA Y Sbjct 183 DGARHVVRTLRQG----RRTATKVIEGRYEAVQRVSGRRWRVPVTAFWQAHRDAAATYRA 238 Query 250 LIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQ 309 L+ DWAQP GMTAWDLYGGAGVFAA LGEAVG SGRVL+VDTSR ++ AARAAL DLPQ Sbjct 239 LVLDWAQPGAGMTAWDLYGGAGVFAAALGEAVGASGRVLSVDTSRASTRAARAALADLPQ 298 Query 310 VEVVTGSVRRVLAVQ--PA-GADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASF 366 V+VVT SVRR LA Q PA AD+AVLDPPR+GAGREV+D L+ AGVPR++HIGCEAASF Sbjct 299 VQVVTDSVRRALAAQRTPALKADVAVLDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASF 358 Query 367 ARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 ARD+G+Y GHGY VEKI+VFDAFPLTH+ ECVALLTR Sbjct 359 ARDMGIYLGHGYTVEKIRVFDAFPLTHHSECVALLTR 395 >gi|336458815|gb|EGO37772.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Mycobacterium avium subsp. paratuberculosis S397] Length=395 Score = 570 bits (1470), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 299/397 (76%), Positives = 326/397 (83%), Gaps = 7/397 (1%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 LTL TG+PANGGSCVAHHEGRVVFVRYALPGERVR RVTA RGSYWHAE +VI+ + Sbjct 3 ELTLTTGSPANGGSCVAHHEGRVVFVRYALPGERVRVRVTADRGSYWHAEVLDVIEAADG 62 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 RI SLC IAG DGAGCCDLAF PEAAR LKA VVANQLERLG H W GEA+PL + GPT Sbjct 63 RIESLCPIAGVDGAGCCDLAFVRPEAARALKAAVVANQLERLGGHRWAGEAEPLGNTGPT 122 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRLDVGADRRPGFHRYHS ELVTDL C QLP GMLDG+ WP AQL+VA+DD Sbjct 123 GWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPGMLDGIAETQWPSAAQLHVAVDD 182 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 DG RHVV ++RQG RT T V+EG Y A QRV RSWRVPVTAFWQAHRDAAA Y Sbjct 183 DGARHVVRTLRQG----RRTATKVIEGRYEAVQRVSGRSWRVPVTAFWQAHRDAAATYRA 238 Query 250 LIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQ 309 L+ DWAQP GMTAWDLYGGAGVFAA LGEAV SGRVL+VDTSR ++ AARAAL DLPQ Sbjct 239 LVLDWAQPGAGMTAWDLYGGAGVFAAALGEAVCASGRVLSVDTSRASTRAARAALADLPQ 298 Query 310 VEVVTGSVRRVLAVQ--PA-GADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASF 366 V+VVT SVRR LA Q PA AD+AVLDPPR+GAGREV+D LA AGVPR++HIGCE ASF Sbjct 299 VQVVTDSVRRALAAQRTPALQADVAVLDPPRAGAGREVIDSLAAAGVPRIVHIGCEVASF 358 Query 367 ARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 ARD+G+Y GHGY +EKI+VFDAFPLTH+ ECVALLTR Sbjct 359 ARDMGIYLGHGYTIEKIRVFDAFPLTHHSECVALLTR 395 >gi|183982039|ref|YP_001850330.1| SAM-dependent methyltransferase [Mycobacterium marinum M] gi|183175365|gb|ACC40475.1| SAM-dependent methyltransferase [Mycobacterium marinum M] Length=401 Score = 560 bits (1442), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 307/402 (77%), Positives = 333/402 (83%), Gaps = 8/402 (1%) Query 6 DDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVID 65 + A+ L LVTGA ANGGSCVA HEGRVVFVR+ALPGERV ARVTAQRGSYW+AE EVID Sbjct 4 NQALELNLVTGAAANGGSCVARHEGRVVFVRHALPGERVLARVTAQRGSYWNAEVIEVID 63 Query 66 PSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSD 125 PSPDRIGSLC IAG DGAGCCDLAFAAP+AAR +K+ VV QL+RLG SW G A+PLSD Sbjct 64 PSPDRIGSLCPIAGVDGAGCCDLAFAAPDAARAIKSSVVGEQLQRLGGFSWSGAAEPLSD 123 Query 126 AGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLV----AADWPPEA 181 AGPTGWR RVRL+VGAD GFHRYHS ELVTDL CGQLP GMLDGL A WP A Sbjct 124 AGPTGWRTRVRLEVGADHCVGFHRYHSNELVTDLRCGQLPDGMLDGLAQRSAKAGWPAGA 183 Query 182 QLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHR 241 QL+VAL DDG RHVV +VR+G RT VVEG QRV RSWR+P TAFWQ+HR Sbjct 184 QLHVALGDDGARHVVLTVRRG----RRTDAKVVEGDPRVLQRVGERSWRIPATAFWQSHR 239 Query 242 DAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAAR 301 DAA VYS L+ADWAQP GMTAWDLYGGAGVFAAVLG+AVGESGRVL+VDT+R AS AAR Sbjct 240 DAAKVYSGLVADWAQPGAGMTAWDLYGGAGVFAAVLGDAVGESGRVLSVDTARAASAAAR 299 Query 302 AALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGC 361 AL DLPQVEVVT SVRRVLA Q GAD+AVLDPPRSGAGREV+DLLA AGV R++HIGC Sbjct 300 VALADLPQVEVVTDSVRRVLAAQDGGADIAVLDPPRSGAGREVIDLLADAGVRRVVHIGC 359 Query 362 EAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 EAASFARD+GLYRGHGY V+ IKVFDAFPLTH+VECVALLTR Sbjct 360 EAASFARDLGLYRGHGYGVDAIKVFDAFPLTHHVECVALLTR 401 >gi|240169709|ref|ZP_04748368.1| SAM-dependent methyltransferase [Mycobacterium kansasii ATCC 12478] Length=396 Score = 557 bits (1435), Expect = 1e-156, Method: Compositional matrix adjust. Identities = 296/396 (75%), Positives = 327/396 (83%), Gaps = 5/396 (1%) Query 8 AVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPS 67 A LTLVTGAPANGGSCVA HEGRVVFVRYALPGERVR RVT++R SYWHAE EV+DPS Sbjct 4 APELTLVTGAPANGGSCVARHEGRVVFVRYALPGERVRVRVTSERRSYWHAEVVEVLDPS 63 Query 68 PDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAG 127 P+RI SLC IAG GAGCCDLAFAAPEAAR LKA VVA+QL+RLG ++W G +PLSDAG Sbjct 64 PNRIESLCPIAGVTGAGCCDLAFAAPEAARALKAHVVADQLKRLGGYNWFGAVEPLSDAG 123 Query 128 PTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAAD-WPPEAQLYVA 186 PTGWR RVRL+VG R GFHRYHS LVTDL CGQ+P GMLDGL + WPP Q+ V Sbjct 124 PTGWRTRVRLEVGPYCRVGFHRYHSSALVTDLQCGQVPAGMLDGLNSGRAWPPGGQVNVV 183 Query 187 LDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAV 246 LDDDG+RHV+ +VR G R T+ VEG Y A QR+ R WRVPVTAFWQAHRDAAAV Sbjct 184 LDDDGQRHVMLTVRHG----RRVATSAVEGEYRAVQRIGGRIWRVPVTAFWQAHRDAAAV 239 Query 247 YSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVD 306 YS L+ADWAQ APGMTAWDLYGGAGVFAAVLGEAVGESGRV TVD++R AS A AAL D Sbjct 240 YSGLVADWAQAAPGMTAWDLYGGAGVFAAVLGEAVGESGRVWTVDSARAASRTAHAALAD 299 Query 307 LPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASF 366 LPQV VV+ SVRR+L QP GAD+AVLDPPR+GAGR+V+ LLA A VPR++HIGCEAASF Sbjct 300 LPQVAVVSESVRRMLEGQPVGADVAVLDPPRTGAGRDVIKLLAAARVPRVVHIGCEAASF 359 Query 367 ARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLT 402 ARDIGLYR H Y VEKI+VFDAFPLTH+VECVALLT Sbjct 360 ARDIGLYRSHDYVVEKIRVFDAFPLTHHVECVALLT 395 >gi|118618652|ref|YP_906984.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99] gi|118570762|gb|ABL05513.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99] Length=401 Score = 554 bits (1428), Expect = 8e-156, Method: Compositional matrix adjust. Identities = 305/402 (76%), Positives = 330/402 (83%), Gaps = 8/402 (1%) Query 6 DDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVID 65 + A+ L LVTGA ANGGSCVA HEGRVVFVR+ALPGERV ARVTAQRGSYW+AE EVID Sbjct 4 NQALELNLVTGAAANGGSCVARHEGRVVFVRHALPGERVLARVTAQRGSYWNAEVIEVID 63 Query 66 PSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSD 125 PSPDRIGSLC IAG DGAGCCDLAFAAP+AAR +K+ VV QL+RLG SW G A+PLSD Sbjct 64 PSPDRIGSLCPIAGVDGAGCCDLAFAAPDAARAIKSSVVGEQLQRLGGFSWSGAAEPLSD 123 Query 126 AGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLV----AADWPPEA 181 AGPTGWR RVRL+ GAD GFHRYHS ELVTDL CGQLP GMLDGL A WP A Sbjct 124 AGPTGWRTRVRLEAGADHCVGFHRYHSNELVTDLSCGQLPDGMLDGLAQRSAKAGWPAGA 183 Query 182 QLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHR 241 QL+VAL DDG RHVV +VR+G RT VVEG QRV RSWR+P TAFWQ+HR Sbjct 184 QLHVALGDDGARHVVLTVRRG----RRTDAKVVEGDPRVLQRVGERSWRIPATAFWQSHR 239 Query 242 DAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAAR 301 DAA V S L+ADWAQP GMTAWDLYGGAGVFAAVLG+AVGESGRVL+VDT+R AS AAR Sbjct 240 DAAKVCSGLVADWAQPGAGMTAWDLYGGAGVFAAVLGDAVGESGRVLSVDTARAASAAAR 299 Query 302 AALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGC 361 AL DLPQVEVVT SVRRVLA Q GAD+AVLDPPRSGAGREV+DLLA AGV R++HIGC Sbjct 300 VALADLPQVEVVTDSVRRVLAAQDGGADIAVLDPPRSGAGREVIDLLADAGVRRVVHIGC 359 Query 362 EAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 EAASFARD+GLYRGHGY V IKVFDAFPLTH+VECVALLTR Sbjct 360 EAASFARDLGLYRGHGYGVHAIKVFDAFPLTHHVECVALLTR 401 >gi|118473429|ref|YP_887104.1| RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118174716|gb|ABK75612.1| putative RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] Length=397 Score = 531 bits (1367), Expect = 9e-149, Method: Compositional matrix adjust. Identities = 270/399 (68%), Positives = 310/399 (78%), Gaps = 7/399 (1%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 68 LTL TGAPANGGSCVA H+GRVVFVRYALPGE VR RV +RGS+W AE EVIDPSP Sbjct 2 TELTLTTGAPANGGSCVARHDGRVVFVRYALPGETVRVRVVDERGSFWRAEVVEVIDPSP 61 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGE----AQPLS 124 DR+ SLC IAG DGAGCCDLAFA P+A+R +K VVANQL RLG + W+ E A+P+ Sbjct 62 DRVDSLCPIAGVDGAGCCDLAFATPDASRRIKGAVVANQLSRLGGYHWRDEDSATAEPVG 121 Query 125 DAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLY 184 TGWR RVRLD AD RPGFHRYHS +LVTDL C QLP GM+DGL P AQL+ Sbjct 122 SGAATGWRTRVRLDTTADGRPGFHRYHSADLVTDLGCAQLPSGMVDGLDDLRVPGGAQLH 181 Query 185 VALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAA 244 +ALD +G RHVV S GP+N ++ T VV+G Y A QR+ R WRVPVTAFWQAHR+AA Sbjct 182 LALDSEGTRHVVQS---GPKNGRKSPTRVVDGQYEAVQRIGSRVWRVPVTAFWQAHREAA 238 Query 245 AVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAAL 304 A+YSDL+A WAQ PGMTAWDLYGGAGVFAA L E VGESG V+TVDTSR +S +ARAAL Sbjct 239 ALYSDLVAGWAQLEPGMTAWDLYGGAGVFAASLAEQVGESGHVVTVDTSRGSSRSARAAL 298 Query 305 VDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAA 364 DL V V+T SVRR LA Q AD+AVLDPPR+GA REV+D +A A VPR+IHIGCEAA Sbjct 299 ADLKSVSVITDSVRRALATQHQRADVAVLDPPRTGANREVIDQIAAADVPRIIHIGCEAA 358 Query 365 SFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 SFARD+GLY HGY VE+I+VFD+FPLTH++ECVA+L R Sbjct 359 SFARDVGLYLRHGYHVEEIRVFDSFPLTHHIECVAVLNR 397 >gi|333991071|ref|YP_004523685.1| SAM-dependent methyltransferase [Mycobacterium sp. JDM601] gi|333487039|gb|AEF36431.1| SAM-dependent methyltransferase [Mycobacterium sp. JDM601] Length=390 Score = 520 bits (1338), Expect = 3e-145, Method: Compositional matrix adjust. Identities = 278/395 (71%), Positives = 311/395 (79%), Gaps = 7/395 (1%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 68 L L G PANGGSCVA H+GRVVFVRYALPGERVRAR+TA+RGSYWHAE EV++ + Sbjct 2 TELILRVGPPANGGSCVARHDGRVVFVRYALPGERVRARITAERGSYWHAECVEVLEAAD 61 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 RI SLC IAG DGAGCCDLAFA P AAR LKA+VVANQL RLG + W GEA+PL + GP Sbjct 62 GRIASLCPIAGVDGAGCCDLAFAEPAAARALKAEVVANQLRRLGGYDWHGEAEPLGEDGP 121 Query 129 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD 188 TGWR RVRL+VGAD R GFHRYHS +LVTDL CGQLP GM GL W P QL+V D Sbjct 122 TGWRSRVRLEVGADGRAGFHRYHSDKLVTDLRCGQLPAGMTKGLAEQTWRPGDQLHVVTD 181 Query 189 DDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYS 248 DDG RHVV + R V+EG YHA Q V RR WR+PVTAFWQAHR AAA+YS Sbjct 182 DDGVRHVVSTSRN-------HRPQVLEGDYHATQWVGRRRWRIPVTAFWQAHRRAAALYS 234 Query 249 DLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLP 308 LI+DWAQP GMTAWDLYGGAG+FAA L + VG SG V+++DTSR A+ AARAALVDLP Sbjct 235 ALISDWAQPEAGMTAWDLYGGAGIFAAALADGVGTSGEVVSIDTSRAATAAARAALVDLP 294 Query 309 QVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFAR 368 QV V T SVRR LA QP AD+AVLDPPR+GAGREV++ LA A VPRL+HIGCE A+FAR Sbjct 295 QVSVRTDSVRRALAAQPRAADVAVLDPPRAGAGREVIEALAAAKVPRLVHIGCEVAAFAR 354 Query 369 DIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 DIGLYR HGYAVE+I+VFDAFPLTH+VECVALLTR Sbjct 355 DIGLYRDHGYAVEQIRVFDAFPLTHHVECVALLTR 389 >gi|126434774|ref|YP_001070465.1| deoxyribonuclease [Mycobacterium sp. JLS] gi|126234574|gb|ABN97974.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. JLS] Length=404 Score = 493 bits (1270), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 263/399 (66%), Positives = 300/399 (76%), Gaps = 7/399 (1%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 68 L L G PANGGSCVA H+GRVVFVR+ALPGE VR RV + RGSYWHA+ EVIDPSP Sbjct 9 TELVLRVGPPANGGSCVARHDGRVVFVRHALPGETVRVRVLSDRGSYWHADVVEVIDPSP 68 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGE----AQPLS 124 +RI SLC IAG DGAGCCDLAF PEAAR LK VVANQL RLG W E A+ + Sbjct 69 ERIPSLCPIAGVDGAGCCDLAFVTPEAARRLKGAVVANQLARLGGFQWCDEDRATAEAIG 128 Query 125 DAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLY 184 D T WR RVRLD GAD PGFHRYHS ELVTDL C QLP +LD + +PP A ++ Sbjct 129 DGAATQWRTRVRLDTGADGAPGFHRYHSAELVTDLRCAQLPPELLDDVHLLRFPPGAHVH 188 Query 185 VALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAA 244 VA+DDDG RH+V S GPR T T VV G+Y A QR+ R WRVPVTAFWQAHRDAA Sbjct 189 VAIDDDGARHIVQS---GPRAGRGTPTTVVSGSYEATQRIGGRVWRVPVTAFWQAHRDAA 245 Query 245 AVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAAL 304 YS+L+ WA PG TAWDLYGGAGVFAA L + VG+ GRVLTVDTSR A +ARAAL Sbjct 246 RRYSELVVQWAALGPGQTAWDLYGGAGVFAAALADQVGDGGRVLTVDTSRAAGRSARAAL 305 Query 305 VDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAA 364 DLPQV VVT SVRR L+ + AD+AVLDPPR+GAGRE++D ++ AGVPR+IHIGCEAA Sbjct 306 ADLPQVRVVTDSVRRALSAERGAADVAVLDPPRAGAGREIIDAISAAGVPRIIHIGCEAA 365 Query 365 SFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 SFARD+GLY GY VE+++VFD+FPLTH+VECVA+LTR Sbjct 366 SFARDVGLYLRAGYTVEEVRVFDSFPLTHHVECVAVLTR 404 >gi|108799166|ref|YP_639363.1| deoxyribonuclease [Mycobacterium sp. MCS] gi|119868281|ref|YP_938233.1| deoxyribonuclease [Mycobacterium sp. KMS] gi|108769585|gb|ABG08307.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. MCS] gi|119694370|gb|ABL91443.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. KMS] Length=404 Score = 493 bits (1270), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 263/399 (66%), Positives = 300/399 (76%), Gaps = 7/399 (1%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 68 L L G PANGGSCVA H+GRVVFVR+ALPGE VR RV + RGSYWH++ EVIDPSP Sbjct 9 TELVLQVGPPANGGSCVARHDGRVVFVRHALPGETVRVRVLSDRGSYWHSDVVEVIDPSP 68 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGE----AQPLS 124 +RI SLC IAG DGAGCCDLAF PEAAR LK VVANQL RLG W E A+ + Sbjct 69 ERIPSLCPIAGVDGAGCCDLAFVTPEAARRLKGAVVANQLARLGGFQWCDEDRASAEAIG 128 Query 125 DAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLY 184 D T WR RVRLD GAD PGFHRYHS ELVTDL C QLP +LD + +PP A ++ Sbjct 129 DGAATQWRTRVRLDTGADGAPGFHRYHSAELVTDLRCAQLPPELLDDVHLLRFPPGAHVH 188 Query 185 VALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAA 244 VA+DDDG RHVV S GPR T T VV G+Y A QR+ R WRVPVTAFWQAHRDAA Sbjct 189 VAIDDDGARHVVQS---GPRAGRGTPTTVVSGSYEATQRIGGRVWRVPVTAFWQAHRDAA 245 Query 245 AVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAAL 304 YS+L+ WA PG TAWDLYGGAGVFAA L + VG+ GRVLTVDTSR A +ARAAL Sbjct 246 RRYSELVVQWAALGPGQTAWDLYGGAGVFAAALADQVGDGGRVLTVDTSRAAGRSARAAL 305 Query 305 VDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAA 364 DLPQV VVT SVRR L+ + AD+AVLDPPR+GAGRE++D ++ AGVPR+IHIGCEAA Sbjct 306 ADLPQVRVVTDSVRRALSAERGAADVAVLDPPRAGAGREIIDAISAAGVPRIIHIGCEAA 365 Query 365 SFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 SFARD+GLY GY VE+++VFD+FPLTH+VECVA+LTR Sbjct 366 SFARDVGLYLRAGYTVEEVRVFDSFPLTHHVECVAVLTR 404 >gi|315444837|ref|YP_004077716.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Mycobacterium sp. Spyr1] gi|315263140|gb|ADT99881.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Mycobacterium sp. Spyr1] Length=402 Score = 484 bits (1245), Expect = 1e-134, Method: Compositional matrix adjust. Identities = 268/405 (67%), Positives = 303/405 (75%), Gaps = 10/405 (2%) Query 4 AGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEV 63 A D A LTL T APANGGSC+A H+GRVVFVRYALPGE VRAR+ RGSY +AEA EV Sbjct 3 ADDSAEELTLTTVAPANGGSCIARHDGRVVFVRYALPGETVRARLVGDRGSYLNAEAVEV 62 Query 64 IDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQ-- 121 ++PS DRI LC IAGADGAGCCDLAFA P A R +K +VVANQL RLG W+ EA+ Sbjct 63 LEPSADRIDPLCPIAGADGAGCCDLAFAEPAAVRRIKGEVVANQLARLGGFQWRDEAEAA 122 Query 122 --PLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPP 179 P+ D TGWR RVRLD D R GFHRYHSG+LV LDC QLP GM+DGL W P Sbjct 123 AEPVGDGAATGWRTRVRLDTSDDGRVGFHRYHSGDLVHRLDCAQLPAGMVDGLADMRWAP 182 Query 180 EAQLYVALDDDGERHVVCSVRQGPRNRTRTV-TNVVEGAYHAHQRVHRRSWRVPVTAFWQ 238 + ++V LDDDG RHVV + R R V T VVEG Y QRV RSWRVP TAFWQ Sbjct 183 GSAVHVVLDDDGNRHVVVAA-----GRDRGVRTTVVEGDYETVQRVAGRSWRVPATAFWQ 237 Query 239 AHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASG 298 AHR A +YS L+ WA+ PGM+AWDLYGGAGVFAA L VG G VLTVDTSR AS Sbjct 238 AHRAAPELYSALVTRWARLEPGMSAWDLYGGAGVFAAALAAGVGPDGSVLTVDTSRGASR 297 Query 299 AARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIH 358 +ARAAL DL V VVT SVRR L Q AD+AVLDPPR+GAGREV+DLLAGAGVPR+IH Sbjct 298 SARAALGDLGNVTVVTDSVRRALGAQRERADVAVLDPPRTGAGREVIDLLAGAGVPRIIH 357 Query 359 IGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 IGCEAASFARD+GLYR HGYAVE+++V+D+FPLTH+VECVA+L+R Sbjct 358 IGCEAASFARDVGLYRTHGYAVEELQVYDSFPLTHHVECVAVLSR 402 >gi|41408904|ref|NP_961740.1| hypothetical protein MAP2806c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397263|gb|AAS05123.1| hypothetical protein MAP_2806c [Mycobacterium avium subsp. paratuberculosis K-10] Length=361 Score = 481 bits (1238), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 263/356 (74%), Positives = 284/356 (80%), Gaps = 8/356 (2%) Query 1 VTRAGDDAV-NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAE 59 +TR G V LTL TG+PANGGSCVAHHEGRVVFVRYALPGERVR RVTA RGSYWHAE Sbjct 1 MTRPGPPPVGELTLTTGSPANGGSCVAHHEGRVVFVRYALPGERVRVRVTADRGSYWHAE 60 Query 60 AFEVIDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGE 119 +VI+ + RI SLC IAG DGAGCCDLAF PEAAR LKA VVANQLERLG H W GE Sbjct 61 VLDVIEAADGRIESLCPIAGVDGAGCCDLAFVRPEAARALKAAVVANQLERLGGHRWAGE 120 Query 120 AQPLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPP 179 A+PL + GPTGWR RVRLDVGADRRPGFHRYHS ELVTDL C QLP GMLDG+ WP Sbjct 121 AEPLGNTGPTGWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPGMLDGIAETQWPS 180 Query 180 EAQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQA 239 AQL+VA+DDDG RHVV ++RQG RT T V+EG Y A QRV RSWRVPVTAFWQA Sbjct 181 AAQLHVAVDDDGARHVVRTLRQG----RRTATKVIEGRYEAVQRVSGRSWRVPVTAFWQA 236 Query 240 HRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGA 299 HRDAAA Y L+ DWAQP GMTAWDLYGGAGVFAA LGEAV SGRVL+VDTSR ++ A Sbjct 237 HRDAAATYRALVLDWAQPGAGMTAWDLYGGAGVFAAALGEAVCASGRVLSVDTSRASTRA 296 Query 300 ARAALVDLPQVEVVTGSVRRVLAVQ--PA-GADLAVLDPPRSGAGREVVDLLAGAG 352 ARAAL DLPQV+VVT SVRR LA Q PA AD+AVLDPPR+GAGREV+D LA AG Sbjct 297 ARAALADLPQVQVVTDSVRRALAAQRTPALQADVAVLDPPRAGAGREVIDSLAAAG 352 >gi|145224506|ref|YP_001135184.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK] gi|145216992|gb|ABP46396.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK] Length=402 Score = 475 bits (1223), Expect = 5e-132, Method: Compositional matrix adjust. Identities = 266/405 (66%), Positives = 299/405 (74%), Gaps = 10/405 (2%) Query 4 AGDDAVNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEV 63 A D A LTL T APANGGSC+A H+ RVVFVRYALPGE VRAR+ RGSY +AEA EV Sbjct 3 ADDSAEELTLTTVAPANGGSCIARHDARVVFVRYALPGETVRARLVGDRGSYLNAEAVEV 62 Query 64 IDPSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQ-- 121 ++ S DRI LC IAGADGAGCCDLAFA P A R +K +VVANQL RLG W+ EA+ Sbjct 63 LESSADRIDPLCPIAGADGAGCCDLAFAEPAAVRRIKGEVVANQLARLGGLQWRDEAEAT 122 Query 122 --PLSDAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPP 179 P+ D TGWR RVRLD D R GFHRYHSGELV LDC QLP GM+DGL W P Sbjct 123 AEPVGDGAATGWRTRVRLDTSDDGRVGFHRYHSGELVHRLDCAQLPAGMVDGLADMRWAP 182 Query 180 EAQLYVALDDDGERHVVCSVRQGPRNRTRTV-TNVVEGAYHAHQRVHRRSWRVPVTAFWQ 238 + ++V LD DG RHVV + R R V T VVEG Y QRV RSWRVP TAFWQ Sbjct 183 GSAVHVVLDGDGNRHVVVAA-----GRDRGVRTTVVEGDYETVQRVAGRSWRVPATAFWQ 237 Query 239 AHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASG 298 AHR A +YS L+ WAQ GM+AWDLYGGAGVFAA L VG G VLTVDTSR AS Sbjct 238 AHRAAPELYSALVTRWAQLELGMSAWDLYGGAGVFAAALAAGVGPDGSVLTVDTSRGASR 297 Query 299 AARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIH 358 +ARAAL DL V VVT SVRR L Q AD+AVLDPPR+GAGREV+DLLAGAGVPR+IH Sbjct 298 SARAALGDLGNVTVVTDSVRRALGAQRERADVAVLDPPRTGAGREVIDLLAGAGVPRIIH 357 Query 359 IGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 IGCEAASFARD+GLYR HGYAVE+++V+D+FPLTH+VECVA+L+R Sbjct 358 IGCEAASFARDVGLYRTHGYAVEELQVYDSFPLTHHVECVAVLSR 402 >gi|120403465|ref|YP_953294.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|119956283|gb|ABM13288.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1] Length=395 Score = 470 bits (1209), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 262/398 (66%), Positives = 298/398 (75%), Gaps = 11/398 (2%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 L L T A ANGGSC+A H+GRVVFVRYALPGE VRAR+ RG+YW+A+ EV++ + + Sbjct 5 ELVLTTVAAANGGSCIARHDGRVVFVRYALPGETVRARLVGDRGAYWNADTVEVLESAAE 64 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGE----AQPLSD 125 RI SLC IAG DG+GCCDLAFA P A R +K VVANQL RLG + W E A+P+ D Sbjct 65 RIDSLCPIAGVDGSGCCDLAFAEPSAVRRIKGAVVANQLARLGNYRWCDESEATAEPVGD 124 Query 126 AGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYV 185 G TGWR RVRLD AD R GFHRYHS ELV LDC QLP G+LDGL WP + ++V Sbjct 125 GGATGWRTRVRLDTSADGRAGFHRYHSAELVHRLDCAQLPAGLLDGLADTQWPAGSVVHV 184 Query 186 ALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAA 245 +DDDG RHV +G R T VVEG Y A QRV R+WRVPVTAFWQAHRDA A Sbjct 185 VVDDDGNRHVA-HTGKGQR------TAVVEGGYEAVQRVAGRTWRVPVTAFWQAHRDAPA 237 Query 246 VYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALV 305 +YS L+A WAQ GMTAWDLYGGAGVFAA L VG++G V TVDTSR AS AARAAL Sbjct 238 LYSALVAQWAQLEAGMTAWDLYGGAGVFAAALARGVGDTGAVTTVDTSRGASRAARAALA 297 Query 306 DLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAAS 365 DL V VVT SVRR L Q AD+AVLDPPR+GAGREVVDLLA A VPR+IHIGCEAAS Sbjct 298 DLGNVSVVTDSVRRALTGQRTRADVAVLDPPRTGAGREVVDLLAAAEVPRIIHIGCEAAS 357 Query 366 FARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 FARD+GLY GHGYAVE+++VFD+FPLTH+VECVA+LTR Sbjct 358 FARDVGLYLGHGYAVEELRVFDSFPLTHHVECVAVLTR 395 >gi|169630075|ref|YP_001703724.1| hypothetical protein MAB_2992c [Mycobacterium abscessus ATCC 19977] gi|169242042|emb|CAM63070.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=388 Score = 431 bits (1109), Expect = 9e-119, Method: Compositional matrix adjust. Identities = 233/396 (59%), Positives = 281/396 (71%), Gaps = 17/396 (4%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQR-GSYWHAEAFEVIDPSPD 69 L + TG ANGGS VA H+GRV+FVR ALPGERVR ++T R S+WH A EV+DPSP Sbjct 7 LEVHTGGAANGGSVVARHDGRVIFVRDALPGERVRVQITDDRQASFWHGAAVEVLDPSPH 66 Query 70 RIGSLCSIA-GADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 RI LC IA A G+GCCDL+FA P R LK VV+ QL RLG++ WQG AQPL P Sbjct 67 RIEPLCPIAHSAVGSGCCDLSFADPVYVRELKGDVVSQQLARLGKYEWQGVAQPLGAGDP 126 Query 129 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD 188 TGWR RVRLDV A +PGFHRYHS ELVTDL C Q+ G+LDGL + E L+ +D Sbjct 127 TGWRTRVRLDVNALGQPGFHRYHSDELVTDLRCAQVVPGLLDGLDQPELGSEGPLHAVMD 186 Query 189 DDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYS 248 D G RHV+ + +VEG A Q+V R W VPVTAFWQAHRDAA YS Sbjct 187 DQGRRHVLRG------------STIVEGEDVAVQKVGDRHWLVPVTAFWQAHRDAAGTYS 234 Query 249 DLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLP 308 L++DWA+ PGM+AWDLYGG GVFAA LGEAVG +G V++VDTSR A +A++AL DL Sbjct 235 RLVSDWAELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAKSALGDLR 294 Query 309 QVEVVTGSVRRVLAVQPAG-ADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFA 367 QV ++ GSVR A++ G AD+AVLDPPR+GAGREV+ +A A V R+IHIGCEAA+FA Sbjct 295 QVTMICGSVRH--AIRDLGEADVAVLDPPRAGAGREVIGKVAAANVSRVIHIGCEAAAFA 352 Query 368 RDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 RD+GLY GY V +++VFDAFPLTH++E ALLTR Sbjct 353 RDVGLYLERGYRVRELRVFDAFPLTHHIESFALLTR 388 >gi|296171886|ref|ZP_06852966.1| SAM-dependent methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893922|gb|EFG73692.1| SAM-dependent methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=255 Score = 402 bits (1033), Expect = 6e-110, Method: Compositional matrix adjust. Identities = 200/257 (78%), Positives = 212/257 (83%), Gaps = 4/257 (1%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVR RVTA RGSYWHAE EV+DP+PD Sbjct 3 ELTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRVRVTADRGSYWHAEVVEVLDPAPD 62 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 RI SLC IAG GAGCCD+AFA PEAAR LKAQVVANQLERLG H W GEA+PLSDAGPT Sbjct 63 RIASLCPIAGVSGAGCCDVAFATPEAARALKAQVVANQLERLGGHRWDGEAEPLSDAGPT 122 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRLDVGADRRPGFHRYHS ELVTDL C QLP GMLDGL +DWPP A L+V +DD Sbjct 123 GWRTRVRLDVGADRRPGFHRYHSDELVTDLRCAQLPPGMLDGLAESDWPPAAHLHVVVDD 182 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 DG RHVV ++RQG RT T VVEG Y A QRV RSW++PVTAFWQAHR AA VYS Sbjct 183 DGARHVVRTMRQG----KRTATKVVEGGYEAVQRVGARSWQIPVTAFWQAHRGAAGVYSR 238 Query 250 LIADWAQPAPGMTAWDL 266 L+ADWA P G TAWDL Sbjct 239 LVADWADPRAGATAWDL 255 >gi|317506803|ref|ZP_07964577.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254877|gb|EFV14173.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length=393 Score = 388 bits (997), Expect = 8e-106, Method: Compositional matrix adjust. Identities = 218/399 (55%), Positives = 268/399 (68%), Gaps = 19/399 (4%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDR 70 + L T + ANGGS V HE R VFVR ALPGE VRARV +GSYWHA+ EV++ SP R Sbjct 8 VELSTQSLANGGSAVGRHENRAVFVRGALPGEAVRARVVKDKGSYWHADLVEVLEASPHR 67 Query 71 IGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTG 130 SLC IA G+GCCDLAF PEAAR+LK +VV+ QL +LG W+GEA+ L PTG Sbjct 68 RPSLCPIAEKHGSGCCDLAFLDPEAARSLKGRVVSEQLAKLGGVEWEGEAEAL--GAPTG 125 Query 131 WRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDD 190 WR RVRL V R GF RYHS EL +L C Q G LDGL +P A++ VA+DD+ Sbjct 126 WRTRVRLAVDESGRAGFRRYHSDELTHELQCPQPAPGSLDGLERRRFPVGAEILVAVDDE 185 Query 191 GERHVVCSVRQ-GPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 RHV + R+ G RN + G+ HA QRV R+WR+PV AFWQ HR+AA Y+ Sbjct 186 QTRHVQLADRKRGRRN--------LAGSGHAVQRVGDRAWRLPVRAFWQPHREAARRYAA 237 Query 250 LIADWAQPAP-----GMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAAL 304 L+A W P G AWDLYGGAG+FA+VL +AVG +GRV TVD++ +S AA +L Sbjct 238 LVAQWTGDLPEADRSGSVAWDLYGGAGLFASVLAQAVGPTGRVFTVDSAGASSRAAVESL 297 Query 305 VDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAA 364 DL VEV++GS ++L P A +AV+DPPRSGAGR VV L AG R+IH+GCE A Sbjct 298 ADLRHVEVLSGSTEKILPDLPR-AQVAVVDPPRSGAGRAVVAAL--AGTDRIIHVGCETA 354 Query 365 SFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 +F+RD+GLY HGY V +I+VFDAFPLTH+VEC ALL R Sbjct 355 AFSRDVGLYVEHGYTVREIRVFDAFPLTHHVECFALLER 393 >gi|296393670|ref|YP_003658554.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM 44985] gi|296180817|gb|ADG97723.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM 44985] Length=390 Score = 385 bits (989), Expect = 6e-105, Method: Compositional matrix adjust. Identities = 221/393 (57%), Positives = 270/393 (69%), Gaps = 12/393 (3%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDR 70 + L T + ANGGS V HE R VFVR ALPGE VRARV +GSYWHA+ EV++ SP R Sbjct 6 IELRTYSLANGGSAVGRHEHRAVFVRGALPGEAVRARVVQDKGSYWHADLVEVLEASPHR 65 Query 71 IGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTG 130 SLC I + +GCCDLAF P AA LK +VVA QL RLG+ +W+G A+ L + PT Sbjct 66 RPSLCPITEQEDSGCCDLAFLDPHAALELKGRVVAEQLARLGKVAWEGCAEVLGE--PTR 123 Query 131 WRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDD 190 WR RVRL V R GFHRYHS ELV+DL C Q G LDGL P A+++V +DD+ Sbjct 124 WRTRVRLAVDQAGRAGFHRYHSKELVSDLACPQPVAGALDGLQKLRLPAGAEVFVVVDDE 183 Query 191 GERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDL 250 G RHV + +RTR N +EG A QRV R WRVPV AFWQ HRDAA Y++L Sbjct 184 GARHVQLA------DRTRGRRN-LEGPGIATQRVGERVWRVPVQAFWQPHRDAARRYTEL 236 Query 251 IADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQV 310 +A W APG AWDLYGGAG+FAAVL AVG +GRV TVD++ +S AA A+L DL V Sbjct 237 VAQWVGEAPGAVAWDLYGGAGLFAAVLARAVGPTGRVFTVDSAGASSRAAAASLKDLRHV 296 Query 311 EVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDI 370 EV++G ++LA P+ A +AV+DPPR+GAGR V+ L A R+IHIGCEAA+F+RD+ Sbjct 297 EVLSGPTGKLLAGLPS-AQVAVVDPPRAGAGRAVIAAL--ARTERVIHIGCEAAAFSRDV 353 Query 371 GLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 GLY GYAV +I+VFDAFPLTH+VEC+ALL R Sbjct 354 GLYVQQGYAVREIRVFDAFPLTHHVECLALLER 386 >gi|111023795|ref|YP_706767.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110823325|gb|ABG98609.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length=422 Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 200/417 (48%), Positives = 254/417 (61%), Gaps = 26/417 (6%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSP 68 L L G P +GG VA HEGRVVFVR+ LPGERV A VT RG SY A+A E++D SP Sbjct 9 RLELRLGNPGHGGFVVARHEGRVVFVRHGLPGERVIALVTEDRGGSYCRADAIEILDASP 68 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 +R+ +C ++G GAGCCD + A+ R +KAQVV+ QL RL R + + L G Sbjct 69 ERVTPVCPVSGPGGAGCCDFSHASLHVQRDMKAQVVSEQLARLARLQRDVDVEELPGTGD 128 Query 129 -TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVAL 187 TGWR RVRL V D RPG+HR+ S +VTDL C Q+ DG+ DW P +++ + L Sbjct 129 GTGWRTRVRLAVDPDGRPGYHRHRSSGIVTDLACPQIESAAYDGVSEHDWKPGSEVQIVL 188 Query 188 DDDGERHVVCSVRQGPRNRTRT---------------------VTNVVEGAYHAHQRVHR 226 D GERHVV P +RT VV G+ +RV Sbjct 189 DSAGERHVV---EIAPPKVSRTGRTSPGRRGAMARRAASGAPRAERVVVGSGRPVERVCD 245 Query 227 RSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGR 286 R W + T FWQAHR AA YS ++A+WA + G TAWDLYGG GVFAA L G SG Sbjct 246 REWALAATGFWQAHRGAAETYSAVVAEWAGMSAGETAWDLYGGVGVFAAALAGDAGPSGH 305 Query 287 VLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVD 346 V +V++SR A +AAL DLPQV V R +A + + VLDPPR+GAGR+V+D Sbjct 306 VDSVESSRQAVSDGKAALSDLPQVRFHAERVERAIAGLASPPRVVVLDPPRAGAGRDVID 365 Query 347 LLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 +A AG R++H+GC+ ASFARDIGLY GY V++++ FDAFPLTH+VEC+ALLTR Sbjct 366 AVAAAGAERVVHVGCDPASFARDIGLYLAQGYHVDELRAFDAFPLTHHVECIALLTR 422 >gi|312139448|ref|YP_004006784.1| (uracil-5-)-methyltransferase [Rhodococcus equi 103S] gi|311888787|emb|CBH48099.1| putative (uracil-5-)-methyltransferase [Rhodococcus equi 103S] Length=422 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 200/417 (48%), Positives = 251/417 (61%), Gaps = 27/417 (6%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSP 68 L + G P +GG CVA HEGRV+FVR+ LPGE+V A VT RG S+ A+A E++ PSP Sbjct 10 RLEVELGNPGHGGFCVARHEGRVLFVRHGLPGEKVVALVTEDRGGSFCRADAVEILAPSP 69 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 DRI SLC IAG GAGCCD + A +A R++KA VVA QL R+ +PL G Sbjct 70 DRIESLCPIAGPGGAGCCDYSHATLDAGRSMKAFVVAEQLRRIAGVEQDVAVEPLPGTGN 129 Query 129 -TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVAL 187 TGWR RVRL V A RPGFHRY S E+ T L C Q+ + GL W P ++ V L Sbjct 130 GTGWRSRVRLAVDASGRPGFHRYRSLEIETFLACPQIDLSAYAGLSERSWQPGGEVQVVL 189 Query 188 DDDGERHVVCSVRQGPRNRTRT---------------------VTNVVEGAYHAHQRVHR 226 D DG+RHVV P +RT VV G+ +RV Sbjct 190 DADGDRHVV---EIAPAKVSRTGRRSPGRRGATARRAASSGTRAERVVIGSGRPVERVGG 246 Query 227 RSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGR 286 R W + T FWQAHR AA Y++++ +W QP+ G WDLYGG GVFAA L + VG +GR Sbjct 247 REWHLAATGFWQAHRGAAETYAEVVGEWTQPSAGDNVWDLYGGVGVFAATLADQVGVTGR 306 Query 287 VLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVD 346 V +V+ S+ A AL DLPQV + V R L P D+ VLDPPR+GAGREVVD Sbjct 307 VDSVEFSKQAVADGGEALADLPQVRLHAARVERALHDLPT-PDVVVLDPPRTGAGREVVD 365 Query 347 LLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 + A R++HIGC+ ASFARD+ L+R GY +E+++ FDAFPLTH+VE +ALLTR Sbjct 366 TIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFDAFPLTHHVESLALLTR 422 >gi|325672664|ref|ZP_08152360.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707] gi|325556541|gb|EGD26207.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707] Length=422 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 200/417 (48%), Positives = 251/417 (61%), Gaps = 27/417 (6%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSP 68 L + G P +GG CVA HEGRV+FVR+ LPGE+V A VT RG S+ A+A E++ PSP Sbjct 10 RLEVELGNPGHGGFCVARHEGRVLFVRHGLPGEKVVALVTEDRGGSFCRADAVEILAPSP 69 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 DRI SLC IAG GAGCCD + A +A R++KA VVA QL R+ +PL G Sbjct 70 DRIESLCPIAGPGGAGCCDYSHATLDAGRSMKAFVVAEQLRRIAGVEQDVAVEPLPGTGN 129 Query 129 -TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVAL 187 TGWR RVRL V A RPGFHRY S E+ T L C Q+ + GL W P ++ V L Sbjct 130 GTGWRSRVRLAVDASGRPGFHRYRSLEIETFLACPQIDLSAYAGLSERSWQPGGEVQVVL 189 Query 188 DDDGERHVVCSVRQGPRNRTRT---------------------VTNVVEGAYHAHQRVHR 226 D DG+RHVV P +RT VV G+ +RV Sbjct 190 DADGDRHVV---EIAPAKVSRTGRRSPGRRGATARRAASSGTRAERVVIGSGRPVERVGG 246 Query 227 RSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGR 286 R W + T FWQAHR AA Y+ ++ +WAQP+ G WDLYGG GVFAA L + VG +GR Sbjct 247 REWHLAATGFWQAHRGAAETYAQVVGEWAQPSAGDNVWDLYGGVGVFAATLADQVGVTGR 306 Query 287 VLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVD 346 V +V+ S+ A AL DL QV + + V R L P D+ VLDPPR+GAGREVVD Sbjct 307 VDSVEFSKQAVADGGEALADLLQVRLHSARVERALHDLPT-PDVVVLDPPRTGAGREVVD 365 Query 347 LLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 + A R++HIGC+ ASFARD+ L+R GY +E+++ FDAFPLTH+VE +ALLTR Sbjct 366 TIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFDAFPLTHHVESLALLTR 422 >gi|226366231|ref|YP_002784014.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226244721|dbj|BAH55069.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length=419 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 197/417 (48%), Positives = 255/417 (62%), Gaps = 29/417 (6%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSP 68 +L L G P +GG VA HEGRVVFVR+ LPGERV AR+T RG SY A+A E++D SP Sbjct 9 DLELQLGNPGHGGFVVARHEGRVVFVRHGLPGERVVARITEDRGGSYCRADAIEILDGSP 68 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 +R+ +C ++G GAGCCD + A+ R +K+QVV+ QL RL R + L G Sbjct 69 ERVAPVCPVSGPGGAGCCDFSHASLHLQRDMKSQVVSEQLLRLARLERNVAVEELPGTGD 128 Query 129 -TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVAL 187 TGWR RVRL V D RPG+HR+ S +VTDL C Q+ DG+ DW P +++ + L Sbjct 129 GTGWRTRVRLAVDPDGRPGYHRHRSSGIVTDLVCPQIEPAAYDGVGEHDWKPGSEVQIVL 188 Query 188 DDDGERHVVCSVRQGPRNRTRT---------------------VTNVVEGAYHAHQRVHR 226 D GERHVV P +RT V+ G+ +RV Sbjct 189 DGAGERHVV---EIAPPKVSRTGRTSPGRRGAMARRAAGGAPRAERVLVGSGRPVERVRD 245 Query 227 RSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGR 286 R W + T FWQAHR AA YS ++ +WA + G TAWDLYGG GVFAA L G +G Sbjct 246 REWELAATGFWQAHRGAAEAYSAVVTEWAGLSAGDTAWDLYGGVGVFAAAL---AGRAGH 302 Query 287 VLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVD 346 V +V+++R A +AAL DLPQV V R +A + + VLDPPR+GAGREVV+ Sbjct 303 VDSVESARQAVADGKAALADLPQVRFHADRVERAIAGLTSPPRVVVLDPPRAGAGREVVE 362 Query 347 LLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 +A AG R++H+GC+ ASFARDIGLY G GY V++++ FDAFPLTH+VEC+ALLTR Sbjct 363 AVAAAGAERVVHVGCDPASFARDIGLYLGQGYHVDELRAFDAFPLTHHVECIALLTR 419 >gi|229491254|ref|ZP_04385080.1| tram domain protein [Rhodococcus erythropolis SK121] gi|229321793|gb|EEN87588.1| tram domain protein [Rhodococcus erythropolis SK121] Length=422 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/413 (47%), Positives = 232/413 (57%), Gaps = 30/413 (7%) Query 16 GAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSPDRIGSL 74 G P +GG VA HEGRVVFVR+ LPGER RVT +G S+ A+A V+D SP RI Sbjct 15 GNPGHGGFVVARHEGRVVFVRHGLPGERALVRVTEDKGGSFCRADAITVLDASPHRIDPT 74 Query 75 CSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP-TGWRI 133 C I+G GAGCCD + A R +K VV QL RL R E + L G TGWR Sbjct 75 CPISGPGGAGCCDYSHADLSVQREMKTSVVREQLLRLARVESDVEVEELPGTGDGTGWRT 134 Query 134 RVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDDGER 193 RVRL V G+H Y S +VTDL C Q+ DGL A W P ++L V LD GER Sbjct 135 RVRLAVDGHGVAGYHAYRSNRIVTDLRCTQIDQSAYDGLGGAQWAPGSELQVVLDAAGER 194 Query 194 HVV-----------------------CSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWR 230 HVV + GPR T V G+ +RV R W Sbjct 195 HVVEIAAPAVSKTGRRTPGRRGAMARRAASGGPRK-----TRVAIGSDTVIERVGSREWA 249 Query 231 VPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTV 290 + T FWQAHR AAA YS ++ +WA A TAWDLYGG GVFAAVL E VG SG V +V Sbjct 250 LAATGFWQAHRGAAAAYSQVVGEWAGAATADTAWDLYGGVGVFAAVLAELVGPSGVVESV 309 Query 291 DTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAG 350 ++S A +AAL DL QV + V ++A + VLDPPR+GAGR VV+ LA Sbjct 310 ESSARAVADGQAALSDLGQVRFHSARVENIIADLERSPAVVVLDPPRAGAGRPVVEALAA 369 Query 351 AGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 G R++HIGC+ ASF RDIGLY G+ + ++ FDAFP TH++EC+A L R Sbjct 370 TGAERIVHIGCDPASFGRDIGLYLEQGFRIGGLRAFDAFPQTHHMECIAFLER 422 >gi|226306318|ref|YP_002766278.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185435|dbj|BAH33539.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length=422 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 188/413 (46%), Positives = 231/413 (56%), Gaps = 30/413 (7%) Query 16 GAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSPDRIGSL 74 G P +GG VA HEGRVVFVR+ LPGER RVT +G S+ A+A V+D SP RI Sbjct 15 GNPGHGGFVVARHEGRVVFVRHGLPGERALVRVTEDKGGSFCRADAITVLDASPHRIDPT 74 Query 75 CSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP-TGWRI 133 C I+G GAGCCD + A R +K VV QL RL R + L G TGWR Sbjct 75 CPISGPGGAGCCDYSHADLSVQREMKTSVVREQLLRLARVESDVAVEELPGTGDGTGWRT 134 Query 134 RVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDDGER 193 RVRL V G+H Y S +VTDL C Q+ DGL A W P ++L V LD G+R Sbjct 135 RVRLAVDGHGVAGYHAYRSNRIVTDLRCTQIDQSAYDGLGGAQWAPGSELQVVLDAAGQR 194 Query 194 HVV-----------------------CSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWR 230 HVV + GPR T V G+ +RV R W Sbjct 195 HVVEIAAPAVSKTGRRTPGRRGAMARRAASGGPRK-----TRVAIGSDTVIERVGNREWA 249 Query 231 VPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTV 290 + T FWQAHR AA YS ++ +WA A TAWDLYGG GVFA+VL + VG SG V +V Sbjct 250 LAATGFWQAHRGAANAYSQVVGEWAGAATADTAWDLYGGVGVFASVLADLVGPSGVVESV 309 Query 291 DTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAG 350 ++S A RAAL DL QV + V V+A + VLDPPR+GAGR VV+ LA Sbjct 310 ESSARAVADGRAALSDLGQVRFHSARVENVIADLERSPAVVVLDPPRAGAGRPVVEALAA 369 Query 351 AGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 G R++HIGC+ ASF RDIGLY G+ + ++ FDAFP TH++EC+ALL R Sbjct 370 TGAERIVHIGCDPASFGRDIGLYLEQGFRIGGLRAFDAFPQTHHMECIALLER 422 >gi|54025714|ref|YP_119956.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54017222|dbj|BAD58592.1| putative ribosomal RNA large subunit methyltransferase [Nocardia farcinica IFM 10152] Length=430 Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 194/424 (46%), Positives = 242/424 (58%), Gaps = 31/424 (7%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTA-QRGSYWHAEAFEVIDPSP 68 + + G P +GG CV HEGRVVFVR+ LPGE V ARVT Q G++ A+A E++ S Sbjct 8 SFEIRLGPPGHGGFCVGRHEGRVVFVRHGLPGETVLARVTEDQGGTFCRADAVEIVHASA 67 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLS---- 124 DR+ C ++G GAGCCD A P A R LKA VVA L R+ + +P++ Sbjct 68 DRVPRSCPVSGPGGAGCCDYTHATPAAQRALKATVVAELLRRVAGLEREVTVEPVAGWPA 127 Query 125 DAGPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLY 184 DA GWR RVRL V A R G HRY S E++ DL C Q G L G+ W P A L Sbjct 128 DA-TGGWRTRVRLPVDALGRAGAHRYRSDEVIADLRCPQPVEGALAGIAERRWTPGADLV 186 Query 185 VALDDDGERHVV-----------------------CSVRQGPRNRTRTVTNVVEGAYHAH 221 VALD DG RH+V + + + V G+ A Sbjct 187 VALDADGIRHIVELAPPEPARGGRDGRRRPAGRRRTAAARRAAAHAPRLEQVRAGSGRAV 246 Query 222 QRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAV 281 + V R W + T FWQAHR AA YSDL+A+WA+ A G AWDLY GAGVFAA L E Sbjct 247 EYVAGRRWEISATGFWQAHRLAAQCYSDLVAEWAELAAGERAWDLYSGAGVFAARLAEQA 306 Query 282 GESGRVLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLA--VQPAGADLAVLDPPRSG 339 G G VL V+++R A RAAL DLP V++ V R + A + VLDPPR+G Sbjct 307 GPDGAVLAVESARPAVADGRAALRDLPWVDLRAARVERWAGEHARTAPPRVVVLDPPRAG 366 Query 340 AGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVA 399 AG+EVV + AG R++HIGC+ ASFARDIGLY GY + ++VFDAFP TH++ECVA Sbjct 367 AGKEVVAAVTAAGPERIVHIGCDPASFARDIGLYHHGGYRLAGLRVFDAFPGTHHMECVA 426 Query 400 LLTR 403 LLTR Sbjct 427 LLTR 430 >gi|333919442|ref|YP_004493023.1| putative RNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1] gi|333481663|gb|AEF40223.1| putative RNA methyltransferase [Amycolicicoccus subflavus DQS3-9A1] Length=436 Score = 305 bits (782), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 186/426 (44%), Positives = 241/426 (57%), Gaps = 33/426 (7%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPS 67 V +TL G PA+GG CV+ H+GRVVFVR +PGERVRA +T RG S+ AE +V+DPS Sbjct 13 VEVTL--GDPAHGGWCVSRHDGRVVFVRRGIPGERVRALITDDRGGSHCFAETVDVVDPS 70 Query 68 PDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPL-SDA 126 PDR+ S+CS++ A GAGCCDLA P +K+ VV+ QL R+ + L D Sbjct 71 PDRVESVCSVSDA-GAGCCDLAHILPSRQLDVKSAVVSGQLRRIAHIDRAVGVETLPRDL 129 Query 127 GPT-----GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEA 181 P GWR RVRL V GF R+ S +LVT LDC Q G+L G+ A W A Sbjct 130 SPGAVSVGGWRTRVRLGVDRTGAAGFRRHRSNDLVTRLDCPQPVPGLLSGIGARKWTAGA 189 Query 182 QLYVALDDDGERHVV--CSVRQGPRNRTRT---------------------VTNVVEGAY 218 +L V D DG RH++ G R RT V EG+ Sbjct 190 ELQVVRDGDGTRHIIEIAPAHAGRRRPNRTDSAEQQRRSAAARRAARARPRSEAVREGSG 249 Query 219 HAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLG 278 A + V R++ + + FWQAH AA Y+ ++A+WA PG AWDLY GAGVFA+VLG Sbjct 250 RAVEYVQGRAFEIAASGFWQAHTSAAEQYAGIVAEWADLRPGEGAWDLYSGAGVFASVLG 309 Query 279 EAVGESGRVLTVDTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRS 338 G G V V+ + + AA+ DLPQV G+ RV+ A + VLDPPR Sbjct 310 AQTGSGGYVEAVEAAPQSVRDGVAAVADLPQVRFHRGATERVIDTLSANPAVVVLDPPRV 369 Query 339 GAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECV 398 GAGR V+ +A A R+IHIGC+ A+FARD LYR GY++ +++ FDAFPLTH+VECV Sbjct 370 GAGRAVISKVAAAAPRRIIHIGCDPAAFARDCALYRAAGYSLAELRAFDAFPLTHHVECV 429 Query 399 ALLTRK 404 + R Sbjct 430 GMFVRN 435 >gi|302525757|ref|ZP_07278099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4] gi|302434652|gb|EFL06468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4] Length=396 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 164/392 (42%), Positives = 219/392 (56%), Gaps = 7/392 (1%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSPD 69 L L G A+GG CV+ +GRV+FVR+ALPGERVRA VT +G S+ A+A EV+ S Sbjct 10 LELEVGPVAHGGHCVSRVDGRVLFVRHALPGERVRAEVTEDKGGSFCRADAIEVLSGSEH 69 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 R+ C +A G G CD A P R LKA VVA QL+RL + +PL + GP Sbjct 70 RVTPPCPLAAPGGCGGCDWQHAEPAYQRELKAAVVAEQLQRLAGITRDVVVEPL-EGGPL 128 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRL G D + G +HS ++ DC G L + W P +L V D Sbjct 129 GWRSRVRLVAGRDGQAGLRAHHSHRVIPIDDCPIAVPGSLGTALGKRWRPGTELEVTSDG 188 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 D H+ R+ R RT + G A Q R WR+ FWQ H AA ++ Sbjct 189 DNHLHL----RELATVRGRTQGKQLSGGM-AIQHAAGRDWRLDAHGFWQVHPRAADTLAE 243 Query 250 LIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQ 309 L+ +WA G AWDLY G G+FA+VL + VG G+VL +++ R A L DLPQ Sbjct 244 LVREWADAPSGGVAWDLYAGVGLFASVLADQVGPDGQVLAIESGRRAVSDGERNLADLPQ 303 Query 310 VEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARD 369 V +G V ++ P D+ VLDPPR GAGR VVD +A R++++ C+ A+ ARD Sbjct 304 VNWRSGRVEHLIGDAPTPVDVVVLDPPRKGAGRAVVDAIAAGEPDRIVYVACDPAALARD 363 Query 370 IGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 + + HGY++ ++ FDAFP+TH+VECVALL Sbjct 364 VQFFSEHGYSLTDLRAFDAFPMTHHVECVALL 395 >gi|256375660|ref|YP_003099320.1| TRAM domain-containing protein [Actinosynnema mirum DSM 43827] gi|255919963|gb|ACU35474.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM 43827] Length=411 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 164/391 (42%), Positives = 226/391 (58%), Gaps = 8/391 (2%) Query 20 NGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSPDRIGSLCSIA 78 +GG CVA HEGRV+FVR+ALPGE VR +T+ G S+ +A EV+ SPDR+ C + Sbjct 20 HGGHCVARHEGRVIFVRHALPGELVRVLITSDNGGSFCRGDAVEVLRSSPDRVTPPCPFS 79 Query 79 GADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTGWRIRVRLD 138 G G CD A+ A R LKA VVA QL+RL + +PL G WR R+RL Sbjct 80 GPGMCGGCDWQHASWGAQRDLKAAVVAEQLQRLAGVEREVVVEPLP-GGHRDWRTRLRLA 138 Query 139 VGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDDDGERHVV-- 196 VG D +PGF +HS +++ C LD ++ W P ++L V LD G++HV Sbjct 139 VGRDGKPGFRGHHSHDVIPVDHCVIAAPHALDDVLDRAWRPGSELAVTLDSTGKQHVTEI 198 Query 197 -CSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADWA 255 + R+G R T + + G+ A +R R W V FWQ H AA ++ ++ +WA Sbjct 199 APAQRRGGRRPTPGPSKLRRGSGGAVERAADRDWLVRADGFWQVHPHAADTFARVVGEWA 258 Query 256 QPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQVEVVTG 315 PG AWDLYGGAG+FA+VL VGE+G V V+++ A + AL DLPQV+ G Sbjct 259 ACEPGDHAWDLYGGAGLFASVLAAQVGETGSVEVVESATNAVRDGQRALADLPQVKWHVG 318 Query 316 SVRRVLAVQP---AGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGL 372 V + P + VLDPPR GAG V+D +A R++++ C+ A+ ARD+ L Sbjct 319 RVEDSVTRAPFTDRSPSVVVLDPPRKGAGAAVLDAVAARRPARVVYVACDPAALARDVAL 378 Query 373 YRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 GHGY + +++ FDAFP+TH+VECVAL TR Sbjct 379 LAGHGYRLAQLRAFDAFPMTHHVECVALFTR 409 >gi|257056412|ref|YP_003134244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora viridis DSM 43017] gi|256586284|gb|ACU97417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora viridis DSM 43017] Length=399 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 165/395 (42%), Positives = 219/395 (56%), Gaps = 7/395 (1%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSP 68 + G A+GG CVA +GRVVFVR+ALPGERV ARVT G S+ A+A +V+ PSP Sbjct 10 TVEATVGPVAHGGHCVARVDGRVVFVRHALPGERVLARVTEDNGKSFCRADAVQVLAPSP 69 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 DR+ C +AG G CD A+ A R LKA+VV QL RL +PLS G Sbjct 70 DRVEPPCPVAGPGLCGGCDWQHASGPAQRELKARVVEEQLRRLAGLDVPVTVEPLS-GGL 128 Query 129 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD 188 WR RVR D G + S +V DC +D ++ W ++ D Sbjct 129 LRWRTRVRFVADGDGNAGLRAHRSHRVVPLQDCPITVRPAVDAVLPHSWSEGDEIEATED 188 Query 189 DDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYS 248 DGE HV R+ P R + G A QR R W++ FWQ H AA ++ Sbjct 189 ADGEVHV----RRLPSRTRRQRPEQLRGGI-AVQRAAGRDWKLDAHGFWQVHPQAADAFA 243 Query 249 DLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLP 308 ++ +WA +PG AWDLY G G+FA+VL E VG GRVL V++ R A RA L + Sbjct 244 QVVREWADASPGARAWDLYAGVGLFASVLAEQVGPKGRVLAVESGRRAVADGRANLAGMR 303 Query 309 QVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFAR 368 QV G V VL + + VLDPPR GAGR VV+ +A AG R++++ C+ A+ AR Sbjct 304 QVRWRCGQVEHVLRQRTDTPQVVVLDPPRKGAGRVVVEAVATAGPDRVVYVACDPAALAR 363 Query 369 DIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 D+ ++ HGY ++K++ FDAFP+TH+VECVALL R Sbjct 364 DVAIFGEHGYRLDKLRAFDAFPMTHHVECVALLRR 398 >gi|300784521|ref|YP_003764812.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32] gi|299794035|gb|ADJ44410.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32] gi|340525942|gb|AEK41147.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei S699] Length=395 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 171/395 (44%), Positives = 225/395 (57%), Gaps = 11/395 (2%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSPD 69 L + GA A+GG CVA EGRVVFVR+ALPGE+VR VT G S+ +A EV+ PSP Sbjct 9 LEVEVGAVAHGGHCVARAEGRVVFVRHALPGEQVRVEVTEDNGGSFCRGDAVEVLSPSPH 68 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 R+ C +A G G CD A P+ R LKA VVA QL+RL + L D GP Sbjct 69 RVTPPCPLAVPGGCGGCDWQHADPDHQRALKAAVVAEQLQRLAGIERDVVVEAL-DGGPL 127 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 WR RVRL G D R G +HS +V DC G LD ++A W P ++L V D Sbjct 128 DWRSRVRLVAGHDGRAGLRAHHSHRVVALDDCPIAVPGELDDVLARRWRPGSELEVTQDG 187 Query 190 DGERHV--VCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVY 247 DG HV + +VR + R R + V A Q R WR+ FWQ H AA+ Sbjct 188 DGGVHVRELSTVRG--KVRARQLAGGV-----AVQHAAGRDWRLDAHGFWQVHPAAASTL 240 Query 248 SDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDL 307 + ++A+WA+ G +AWDLY G G+FA+VL VG SGRVL +++ R A L DL Sbjct 241 AAVVAEWAEAPVGGSAWDLYAGVGLFASVLATQVGTSGRVLAIESGRRAVADGERNLADL 300 Query 308 PQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFA 367 PQV G V VL D+ VLDPPR GAG+ VV+ + R++++ C+ A+ A Sbjct 301 PQVSWHAGRVEHVLESAAKPVDVVVLDPPRKGAGKAVVESIVAGAPDRIVYVACDPAALA 360 Query 368 RDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLT 402 RD+ + HGY++ ++ FDAFP+TH+VECVALL+ Sbjct 361 RDVATFAAHGYSLTDLRAFDAFPMTHHVECVALLS 395 >gi|38233983|ref|NP_939750.1| hypothetical protein DIP1398 [Corynebacterium diphtheriae NCTC 13129] gi|51316648|sp|Q6NGV2.1|Y1398_CORDI RecName: Full=Uncharacterized RNA methyltransferase DIP1398 gi|38200245|emb|CAE49929.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=420 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/411 (40%), Positives = 233/411 (57%), Gaps = 20/411 (4%) Query 9 VNLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSP 68 +N+ ++ A +GG +A ++GRV+FV+ A PG+R+ A +T + + A + PSP Sbjct 14 INVEILNAA--HGGQGIAKYDGRVIFVKGAFPGDRLSANITHVKKKFARATIASIEMPSP 71 Query 69 DRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP 128 R+ C +A A+GAGCCD PE KA +V QLERLG+ S + +S P Sbjct 72 LRMQQRC-LAAANGAGCCDFGEFDPEIEGRYKADLVLEQLERLGKVSQPPTCEVVSFGSP 130 Query 129 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAAD-----WPPEAQL 183 T WR R+RL V A R G S E+V+ + C Q +G+LDG+V A+ + P +Q+ Sbjct 131 TQWRTRMRLGVDAQGRAGGFASQSREVVSGVPCSQGVMGLLDGIVGAEQNVLRFTPGSQV 190 Query 184 YVALDDDGERHVVCSVRQGPR-NRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRD 242 V DD G+R VV + PR RT ++ VVEG Q V ++ +P T FWQ+H+D Sbjct 191 VVVCDDLGQRTVV-ETQPAPRGKRTESMVKVVEGTGKVSQVVDGVTFELPATGFWQSHKD 249 Query 243 AAAVYSDLIADWA------QPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLA 296 AA Y+D I +W + AWDLYGG G FA+ + AV G V V+++ A Sbjct 250 AAQAYADTIREWFGSLIIRNTDSSLVAWDLYGGCGSFASAILSAVDNHGVVHCVESAPAA 309 Query 297 SGAARAALVDLPQVEVV---TGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGV 353 A + AL L + + + T +V R + PA L VLDPPR GAG E V +A +G Sbjct 310 VSAGKRALSQLVEDQKIVFHTETVERAMNQLPA-PTLVVLDPPRVGAGAETVRAIAQSGP 368 Query 354 PRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRK 404 IHIGC+ A+FARDI + +G+ +EK++VFDAFP TH+ E + LLT+K Sbjct 369 QAAIHIGCDPATFARDIAEWSRNGFILEKLRVFDAFPGTHHCETIGLLTKK 419 >gi|255325118|ref|ZP_05366224.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141] gi|255297683|gb|EET76994.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141] Length=407 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/392 (43%), Positives = 224/392 (58%), Gaps = 14/392 (3%) Query 19 ANGGSCVAHH-EGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSI 77 A+GG + +GRVVFV A PG+ V+A + S+ AE V+ P P R+ S C Sbjct 20 AHGGEGIGQAPDGRVVFVPRAFPGDVVKATAGRVKKSFIKAELESVLSPGPLRVPSSCP- 78 Query 78 AGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT-GWRIRVR 136 A A GAGCCD A P A +KA++++ QL R G + + P GWR RVR Sbjct 79 AAAQGAGCCDFAELDPAAETGIKAEILSEQLRRTGVVTGEELNIEQHTLEPVRGWRTRVR 138 Query 137 LDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLV---AADWPPEAQLYVALDDDGER 193 V R G + S ELVT C QL G+ +GLV A + P A++ LD DG R Sbjct 139 WGVDKQGRAGTRQRRSNELVTGAACTQLAPGLAEGLVGEGARRFTPGAEVIAVLDGDGNR 198 Query 194 HVVCSVRQGPRNR-TRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIA 252 HVV R+ PR R T+ VVEG+ H+ V R++ P TAFWQAH A A Y+DLIA Sbjct 199 HVV-ETRKAPRGRRVETIREVVEGSGKVHEHVDGRTFSFPATAFWQAHSHAPAAYTDLIA 257 Query 253 DW--AQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQV 310 +W + TAWDLYGG G+F L AV G+V++VD S A+ +AAL D V Sbjct 258 EWLGGREYQEHTAWDLYGGVGLFVPALAHAV--QGKVISVDYSPAATAGEQAALADC-DV 314 Query 311 EVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDI 370 EV + V +V A P + VLDPPR+GAG +V+ +A A ++H+GC+ A+FARD+ Sbjct 315 EVKSAKVEQVAAQLPKPGAV-VLDPPRTGAGEDVIRSVAAAAPQTVVHVGCDPATFARDL 373 Query 371 GLYRGHGYAVEKIKVFDAFPLTHYVECVALLT 402 G + HGY +EK+ + +AFP TH+ E +AL+T Sbjct 374 GYWNQHGYGIEKMALINAFPGTHHFETIALIT 405 >gi|296270254|ref|YP_003652886.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM 43833] gi|296093041|gb|ADG88993.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM 43833] Length=407 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 166/402 (42%), Positives = 217/402 (54%), Gaps = 21/402 (5%) Query 19 ANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSIA 78 ANGG CV HEGRVVFVR+ALPGERV A VT + + A+A E++DPSPDR+ C + Sbjct 11 ANGGWCVGRHEGRVVFVRHALPGERVLAEVTEETARFLRADAVEILDPSPDRVTPPCPFS 70 Query 79 GADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDA-GPTGWRIRVRL 137 G G CD A+ A R LKA+VV+ QL RL E + + A G GWR RVR Sbjct 71 GPGRCGGCDWQHASLAAQRRLKAEVVSEQLRRLAGIDRAVEVEEVPGASGGLGWRTRVRF 130 Query 138 DVGADRRPGFHRYHSGELVTDLDCGQLPVGMLD-GLVAADWPPEAQLYVALDDDGERHVV 196 G D R G R+ S E+ C G+ + G A WP + VA+ G+R V+ Sbjct 131 AAGPDGRLGLRRHRSHEIEYVGSCPIAHPGVEEVGAEARRWPGADTVEVAVSSGGDRAVI 190 Query 197 CSVRQGPRNRT--------------RTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRD 242 PR R R V+ G+ +R R +RV + FWQ H Sbjct 191 IR----PRRRVTVPEVDASVLLDQGRRGVRVLTGSPSLTERAGDREFRVTGSGFWQIHPG 246 Query 243 AAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARA 302 A + + +PAPG A DLY GAG+FAA LGEAVG G VL +++ A AR Sbjct 247 APETLLRTVLELGRPAPGERALDLYCGAGLFAAGLGEAVGPEGSVLGIESDPQAVRDARW 306 Query 303 ALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCE 362 L DLP + G V L A ADL V DPPR+G GREVV+ +AG G R +++ C+ Sbjct 307 NLRDLPNTRIERGRVEEALGAA-ARADLVVADPPRTGLGREVVERIAGLGPSRFVYVSCD 365 Query 363 AASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRK 404 A+ +RDI HGY + +++ FD +P+TH+VECVALL R+ Sbjct 366 PATMSRDIAWLTPHGYELAELRAFDQYPMTHHVECVALLVRR 407 >gi|227549133|ref|ZP_03979182.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227078801|gb|EEI16764.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length=410 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 164/404 (41%), Positives = 226/404 (56%), Gaps = 18/404 (4%) Query 7 DAVNLTLVTGAPANGGSCVAH-HEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVID 65 D L L A A+GG +A +GRVVFV A+PG++VRA +T + + A+ EV+ Sbjct 8 DNTTLELDVTAMAHGGEGIARDSDGRVVFVGGAIPGDKVRAELTKVKKMWARAQLTEVVS 67 Query 66 PSPDRIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSD 125 SPDR+ C +A A G GCCD + AP A +K +V+ QL ++ A+ L D Sbjct 68 ASPDRVSPTCPVA-ARGGGCCDYSHIAPAAQPGIKREVLIGQL-----GAFSNSAEALGD 121 Query 126 A----GPTGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLV---AADWP 178 T WR RVRL V + R G S +L+TD+ C Q+ G+LDG+V A + Sbjct 122 TVVLEPATRWRSRVRLGVDSSGRAGVRTARSTQLITDVACSQVVPGLLDGIVGPGARTFT 181 Query 179 PEAQLYVALDDDGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQ 238 P A++ LD G+RHVV S R R V VVEG+ Q V + ++R P TAFWQ Sbjct 182 PGAEVIAVLDSTGQRHVVESTRAQRGRRVEKVDRVVEGSGVVEQNVGKHAFRFPATAFWQ 241 Query 239 AHRDAAAVYSDLIADWAQP-APGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLAS 297 AH A A YS++I W + T WDLYGG G F + EA+G + + +VD S A+ Sbjct 242 AHVAAPAAYSEVIRSWGKADYERATGWDLYGGVGAFVPAIDEALGGAAHIDSVDYSVSAT 301 Query 298 GAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLI 357 AA+ L + V V + + P G L VLDPPRSGAG +VV +AGA R+I Sbjct 302 RAAQDTLAGF-ALRVHNSPVEKAGELTPPG--LVVLDPPRSGAGEDVVRRVAGAAPERII 358 Query 358 HIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 H+GC+ A+FARD+G + HG+ V ++ + DAFP TH+ E +A L Sbjct 359 HVGCDPATFARDLGYWAAHGFGVRRMVLIDAFPNTHHFEMIAQL 402 >gi|331696878|ref|YP_004333117.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia dioxanivorans CB1190] gi|326951567|gb|AEA25264.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia dioxanivorans CB1190] Length=398 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 168/392 (43%), Positives = 211/392 (54%), Gaps = 21/392 (5%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRG-SYWHAEAFEVIDPSPD 69 L L GA A+GG CVA H+GRVVFVR+ALPGERV A VT G S+ A+A V Sbjct 25 LDLEIGAVAHGGHCVARHDGRVVFVRHALPGERVLAVVTEDGGGSFCRADAISVRTAHTG 84 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 R+ C+ A A G G CD A PE R LK VV QL RL + L GP Sbjct 85 RVAPPCTWARAGGCGGCDFQHATPELQRELKTVVVREQLARLAGIDSDVTVEELP-GGPL 143 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALDD 189 GWR RVRL V + R G + S E++ DC P G+L ++A P + + +D Sbjct 144 GWRTRVRLAVDGEGRAGLRAHRSHEVLPVADCPIAPEGVLPPVLARRHRPGEEFEITVDA 203 Query 190 DGERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSD 249 DG H R VV QRV R WR+ AFWQ H A + Sbjct 204 DGTVH-----------DERDGAPVV-------QRVAGREWRLRPGAFWQVHPALAPTLAA 245 Query 250 LIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQ 309 ++ WA G TAWDLYGGAG+FAAVL E VG G V V+++ A AAL DLPQ Sbjct 246 VVGQWAAAPAGATAWDLYGGAGLFAAVLAEQVGRDGAVTVVESAAGAVADGEAALADLPQ 305 Query 310 VEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARD 369 V G V RVL A D+ V DPPRSG GR +V+ + G R++H+ C+ A+ RD Sbjct 306 VAWEVGRVERVLPAL-ADPDVVVADPPRSGLGRALVEAICARGPRRVVHVACDPAALGRD 364 Query 370 IGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 +GL+ GY + ++ FDAFP+TH++ECVALL Sbjct 365 VGLFAALGYRLTALRAFDAFPMTHHMECVALL 396 >gi|305681414|ref|ZP_07404221.1| TRAM domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659619|gb|EFM49119.1| TRAM domain protein [Corynebacterium matruchotii ATCC 14266] Length=410 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 157/404 (39%), Positives = 217/404 (54%), Gaps = 17/404 (4%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 ++T PA+GG + +GRVVFVR PG+ V AR+T + +Y A +++ PSP Sbjct 10 HITTTITRPAHGGVGIGDLDGRVVFVRGTYPGDVVEARITQVKKNYAKATLVDIVTPSPL 69 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 R+ + C A A GAGCCD A PEA LK ++ QL +LG+ + T Sbjct 70 RVPNRCP-AAAHGAGCCDFADLKPEAELELKTTILTGQLTKLGKLAALPSITAQELLPTT 128 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGML----DGLVAAD----WPPEA 181 GWR R+RL V R GF + HS +LVTD C Q G+L D +V AD + P A Sbjct 129 GWRSRIRLGVDRAGRAGFRKAHSHDLVTDHRCIQPMPGLLGDGPDSIVGADSNHRFTPGA 188 Query 182 QLYVALDDDGERHVVCSVRQGPRNR-TRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 ++ LDDDG RHVV VR+ R R + +T V+ G Q+V ++ +P TAFWQAH Sbjct 189 EVIAVLDDDGTRHVV-EVRKPARGRRSEIITKVISGTGDVVQKVGEYTFTLPPTAFWQAH 247 Query 241 RDAAAVYSDLIADW---AQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLAS 297 A + YSDLI W Q WDLYGG G L A+G + + +V+++R+ + Sbjct 248 HQALSTYSDLITQWVTGGQYGVEPVGWDLYGGVGALVPALHHALGNNSHIHSVESARIMA 307 Query 298 GAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLI 357 + + D V G V ++ P D+ VLDPPR GAG +VV +A R+I Sbjct 308 TSGQVTFGD--DVHFHIGLVGNLVDTLPQ-PDVVVLDPPRVGAGADVVTRIAARKPQRVI 364 Query 358 HIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 HIGC+ A+FA DI + GY + I V +AFP TH+ E + LL Sbjct 365 HIGCDPATFATDIRAWSQAGYHLSDIVVVNAFPGTHHFETLGLL 408 >gi|343924644|ref|ZP_08764188.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433] gi|343765444|dbj|GAA11114.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433] Length=430 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 176/413 (43%), Positives = 219/413 (54%), Gaps = 31/413 (7%) Query 18 PANGGSCVAHHEGRVVFVRYALPGERVRARVTAQR-GSYWHAEAFEVIDPSPDRIGSLCS 76 PANGG V +GRV+FVR A+PGERV A +T R SYW AEA E++D SP R+ +C Sbjct 17 PANGGEAVGRADGRVLFVRGAIPGERVVAEITDDRHDSYWRAEAVEILDESPHRVPVVCP 76 Query 77 IAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEA-QPLSDAG-------P 128 A A GAGCCDL P AR LK V+ + L R+G A L+ G Sbjct 77 -AAAGGAGCCDLGHIEPGHARDLKQAVLLDVLSRIGHLDEATIAGTDLATRGVDRLPGTD 135 Query 129 TGWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAADWPPEAQLYVALD 188 TGWRIR RL V R G H + ++ D+ C Q GM+D L + P A+L V LD Sbjct 136 TGWRIRTRLAVDGRGRAGQHAFRGSAVIHDV-CVQPAPGMVDDLAGRRFTPHAELAVVLD 194 Query 189 DDGERHV-----VCSVRQGPRNRTRTVTN----------VVEGAYHAHQRVHRRSWRVPV 233 DG RH+ V VR G R VVEGA A RV RSW +PV Sbjct 195 ADGTRHITELAPVAEVRHGDARRRAQQNRRRRSRPRAQVVVEGAESAVHRVGDRSWDIPV 254 Query 234 TAFWQAHRDAAAVYSDLIADWAQPAPGM---TAWDLYGGAGVFAAVLGEAVGESGRVLTV 290 T FWQAHR A Y+D + + + G AWDLYGGAGVFA L + + + Sbjct 255 TGFWQAHRAAPQTYADTVVGFVRDHLGTGPRVAWDLYGGAGVFAGALLDHHRTGLEEVHI 314 Query 291 DTSRLASGAARAALVDLPQVEVVTGSVRRVLAVQPAGA--DLAVLDPPRSGAGREVVDLL 348 S + AA A D VVT V GA D+ VLDPPR+GAG VV+ + Sbjct 315 VDSDAGALAAAARTFDADGDRVVTHQGEVAARVHDLGAAPDVVVLDPPRTGAGERVVEAI 374 Query 349 AGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 A A + H+GC+AA FARD+GL+ GY V +++ FDAFPLTH+VE +A L Sbjct 375 AAAEPAVVAHVGCDAARFARDLGLFARAGYRVAQVRGFDAFPLTHHVEAIACL 427 >gi|271968013|ref|YP_003342209.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum DSM 43021] gi|270511188|gb|ACZ89466.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum DSM 43021] Length=415 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 165/415 (40%), Positives = 220/415 (54%), Gaps = 29/415 (6%) Query 11 LTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDR 70 + L G A+GG CVA H+GRVVFVR+ALPGERV A +T + + A+A E+++PS DR Sbjct 3 VELTVGPVAHGGWCVARHDGRVVFVRHALPGERVLAEITEETSRFLRADAVEILEPSADR 62 Query 71 IGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGP-T 129 + C AG G CD A+ +A R LK VVA QL+RL W+G + + A Sbjct 63 VTPPCPFAGPGRCGGCDWQHASLDAQRLLKTDVVAEQLKRLAGIEWKGVVEEVPGAPDGL 122 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQL--PVGMLDGLVAADWPPEAQLYVAL 187 GWR RV+ V + G R+ S + + LD + P G +W + + V Sbjct 123 GWRTRVQFAVDREGVLGLRRHRSHD-IEPLDACLIAHPEVENVGAEVMNWRNASSVEVIA 181 Query 188 DDDGERHVVCSVRQGPRNRTRTV-------------------TNVVEGAYHAHQRVHRRS 228 GE+ VV + PR R RTV T VV G H +RV R Sbjct 182 SSVGEQAVVVA----PRPR-RTVAVPDLDTSVAVFVDEGKGRTRVVHGRNHLTERVGDRD 236 Query 229 WRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVL 288 ++V + FWQ H AAA + ++A P PG A DLY G G+FAA L EAVG G V Sbjct 237 FQVTGSGFWQVHPGAAATLLATVLEFAAPQPGEWALDLYCGVGLFAAGLAEAVGPEGAVF 296 Query 289 TVDTSRLASGAARAALVDLPQVEVVTGSVRRVL-AVQPAGADLAVLDPPRSGAGREVVDL 347 V++ +A A L DLPQ G V L ADL V+DPPR+G GREVVD Sbjct 297 GVESEAVAVRDAERNLRDLPQARFARGRVENALDRFGIERADLVVVDPPRAGLGREVVDR 356 Query 348 LAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLT 402 +A R++++ C+ A+ ARDI HGY++ ++ FDAFP+TH+VECVALL Sbjct 357 VATLQAGRIVYVSCDPATLARDIAWLADHGYSLADLRAFDAFPMTHHVECVALLV 411 >gi|296117766|ref|ZP_06836350.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295969497|gb|EFG82738.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM 20306] Length=438 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 142/395 (36%), Positives = 222/395 (57%), Gaps = 15/395 (3%) Query 19 ANGGSCVAHH-EGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSI 77 A+GG + + +GR+VFV+ PG+ V RVT + S+ HAE V+ P R+ S C Sbjct 30 AHGGEGIGNAPDGRIVFVQGGFPGDEVEVRVTKAKKSFAHAELVTVLQAGPHRVASSCP- 88 Query 78 AGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTGWRIRVRL 137 A GAGCCD A P + +K ++ +QL R+ + + + + ++ GWR RVRL Sbjct 89 AAELGAGCCDFAELNPASEVGIKLDILVDQLHRVAKATDIPDIETINLNPQRGWRTRVRL 148 Query 138 DVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLVAAD---WPPEAQLYVALDDDGERH 194 V R G + +S ++V ++ C QL G++DGLV AD + P +++ +D G+RH Sbjct 149 GVDEQGRAGARKRNSNDIVHEVACSQLVPGLVDGLVGADARRFTPNSEVIAVIDSKGDRH 208 Query 195 VVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIADW 254 VV S + R VT V+EG+ ++ + P TAFWQAH A Y+++I ++ Sbjct 209 VVESSKAPRGRRVEKVTTVIEGSGDVVEQADGHEFSFPATAFWQAHIAAPETYAEVIREY 268 Query 255 AQPAPGMTA-----WDLYGGAGVFAAVLGEAVG---ESGRVLTVDTSRLASGAARAALVD 306 + P WDLYGG GVF + ++G + RV++VD S A+ ++ L Sbjct 269 LKDCPHTVGREPLGWDLYGGVGVFVPAIARSLGSPQKPARVISVDYSPAATALNQSDLEQ 328 Query 307 LPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASF 366 +++VV+ V +V A P G VLDPPR+GAG +VV +A R++H+GC+ A+F Sbjct 329 Y-ELDVVSDRVEKVAAQLP-GPTAVVLDPPRTGAGLDVVSTVASVAPQRVVHVGCDPATF 386 Query 367 ARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 ARDI + HG+ V+++ + +AFP TH+ E +ALL Sbjct 387 ARDINYWNEHGFQVQRLSLVNAFPGTHHFEVIALL 421 >gi|19553107|ref|NP_601109.1| SAM-dependent methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|62390742|ref|YP_226144.1| RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|51316625|sp|Q6M4B7.1|Y1903_CORGL RecName: Full=Uncharacterized RNA methyltransferase Cgl1903/cg2084 gi|21324673|dbj|BAB99296.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41326080|emb|CAF20243.1| PUTATIVE RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length=412 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 158/398 (40%), Positives = 227/398 (58%), Gaps = 19/398 (4%) Query 18 PANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSI 77 PA+GG + HH+GRV+FV+ +PG+ V + + + E +V S DR+ S C Sbjct 20 PAHGGEGIGHHDGRVIFVKGGIPGDVVDVEIAQLKKKWARGEVVKVTTASADRVDSRCPA 79 Query 78 AGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT-GWRIRVR 136 A A CCD A P +K++V+ +QLER+G E + L D PT GWR RVR Sbjct 80 AAAGAG-CCDYAELNPTVELEIKSRVLRDQLERIGGIDELPEFE-LQDLEPTAGWRTRVR 137 Query 137 LDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLV---AADWPPEAQLYVALDDDGER 193 L V A R GF + S ELVT++ C Q+ +L+GLV A + P ++ A+DD G+R Sbjct 138 LGVDASGRAGFRKLKSNELVTEVACSQVVPELLEGLVGEGARRFTPGVEIIAAIDDAGQR 197 Query 194 HVVCSVRQGPRNR-TRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIA 252 HVV S R+ PR R T TV V+EG Q+V +W+ PV++FWQAH A A YS+ IA Sbjct 198 HVVES-RKAPRGRRTETVLKVLEGTGEVEQKVGDYTWKFPVSSFWQAHTKAPAAYSEFIA 256 Query 253 DWAQ-------PAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALV 305 + G AWDLYGG G+FA ++ + V +V+ S ++ A AL Sbjct 257 EALTGLELVDVDKRGPVAWDLYGGVGLFAPIITSKL--QAAVHSVELSPGSAEAGEEALA 314 Query 306 DLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAAS 365 LP V TG V +A Q ++ VLDPPR+GAG +V+ +A A +IHIGC+ A+ Sbjct 315 GLP-VTFHTGRVEG-MASQLPSPNVVVLDPPRTGAGSDVLKSIAEAKPQLVIHIGCDPAT 372 Query 366 FARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTR 403 FARD+ ++ +GY ++++ VF+AFP TH+ E + + R Sbjct 373 FARDVADWKLNGYEMDQLAVFNAFPGTHHFETIGVFVR 410 >gi|311739580|ref|ZP_07713415.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305396|gb|EFQ81464.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length=407 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 163/392 (42%), Positives = 222/392 (57%), Gaps = 14/392 (3%) Query 19 ANGGSCVAHH-EGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSI 77 A+GG + +GRVVFV A PG+ V+A + S+ AE V+ P R+ SLC Sbjct 20 AHGGEGIGQAPDGRVVFVPRAFPGDVVKATAGRVKKSFIKAELESVLSPGALRVPSLCP- 78 Query 78 AGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT-GWRIRVR 136 A A GAGCCD A P A +KA++++ QL R G + + P GWR RVR Sbjct 79 AAAQGAGCCDFAELDPAAETGIKAEILSEQLRRTGVVTGEELNIEQHTLEPVRGWRTRVR 138 Query 137 LDVGADRRPGFHRYHSGELVTDLDCGQLPVGMLDGLV---AADWPPEAQLYVALDDDGER 193 V R G + S ELVT C QL G+ + LV A + P A++ LD +G R Sbjct 139 WGVDKQGRAGTRQRRSNELVTGAACTQLAPGLAERLVGEGARRFTPGAEVIAVLDGEGNR 198 Query 194 HVVCSVRQGPRNR-TRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDLIA 252 HVV R+ PR R T+ VVEG+ H+ V R++ P TAFWQAH A A Y+DLIA Sbjct 199 HVV-ETRKAPRGRRVETIREVVEGSGKVHEHVDGRTFSFPATAFWQAHSHAPAAYTDLIA 257 Query 253 DW--AQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAARAALVDLPQV 310 +W + TAWDLYGG G+F VL AV G+V++VD S A+ +A L D V Sbjct 258 EWLGGREYQEHTAWDLYGGVGLFVPVLAHAV--QGKVISVDYSPAATAGEQAGLADC-DV 314 Query 311 EVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDI 370 EV + V +V A P + VLDPPR+GAG +V+ +A A ++H+GC+ A+FARD+ Sbjct 315 EVKSAKVEQVAAQLPKPGAV-VLDPPRTGAGEDVIRSVAAAAPQAVVHVGCDPATFARDL 373 Query 371 GLYRGHGYAVEKIKVFDAFPLTHYVECVALLT 402 G + HGY + K+ + +AFP TH+ E +AL+T Sbjct 374 GYWNQHGYGIGKLALINAFPGTHHFETIALIT 405 >gi|225021274|ref|ZP_03710466.1| hypothetical protein CORMATOL_01286 [Corynebacterium matruchotii ATCC 33806] gi|224946007|gb|EEG27216.1| hypothetical protein CORMATOL_01286 [Corynebacterium matruchotii ATCC 33806] Length=410 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 156/404 (39%), Positives = 216/404 (54%), Gaps = 17/404 (4%) Query 10 NLTLVTGAPANGGSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPD 69 ++T PA+GG + +GRVVFVR PG+ V A +T + +Y A +++ PSP Sbjct 10 HITTTITRPAHGGVGIGDLDGRVVFVRGTYPGDVVEACITQVKKNYAKATLVDIVTPSPL 69 Query 70 RIGSLCSIAGADGAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPT 129 R+ + C A A GAGCCD A PEA LK ++ QL +LG+ + T Sbjct 70 RVPNRCP-AAAHGAGCCDFADLKPEAELELKTTILTGQLTKLGKLAALPPITAQELPPTT 128 Query 130 GWRIRVRLDVGADRRPGFHRYHSGELVTDLDCGQLPVGML----DGLVAAD----WPPEA 181 GWR R+RL V R GF + HS +LVTD C Q G+L D +V AD + P A Sbjct 129 GWRSRIRLGVDRAGRAGFRKAHSHDLVTDHRCIQPMPGLLGDGPDSIVGADSKYRFTPGA 188 Query 182 QLYVALDDDGERHVVCSVRQGPRNR-TRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAH 240 ++ LDDDG RHVV VR+ R R + +T V+ G Q+V ++ +P TAFWQAH Sbjct 189 EVIAVLDDDGTRHVV-EVRKPARGRRSEIITKVISGTGDVVQKVGEYTFTLPPTAFWQAH 247 Query 241 RDAAAVYSDLIADW---AQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLAS 297 A + YSDLI W Q WDLYGG G L A+G + + +V+++R+ + Sbjct 248 HQALSTYSDLITQWVTGGQYGVEPVGWDLYGGVGALVPALHHALGNNSHIHSVESARIMA 307 Query 298 GAARAALVDLPQVEVVTGSVRRVLAVQPAGADLAVLDPPRSGAGREVVDLLAGAGVPRLI 357 + + D V G V ++ P D+ VLDPPR GAG +VV +A R+I Sbjct 308 ISGQVTFGD--DVHFHIGLVGNLVDTLPQ-PDVVVLDPPRVGAGADVVTRIAARKPQRVI 364 Query 358 HIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALL 401 HIGC+ A+FA DI + GY + I V +AFP TH+ E + LL Sbjct 365 HIGCDPATFATDIRAWSQAGYHLSDIVVVNAFPGTHHFETLGLL 408 Lambda K H 0.321 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 804061019016 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40