BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2698 Length=161 Score E Sequences producing significant alignments: (Bits) Value gi|308371100|ref|ZP_07423827.2| conserved alanine rich membrane ... 313 8e-84 gi|15609835|ref|NP_217214.1| alanine rich transmembrane protein ... 311 2e-83 gi|340627699|ref|YP_004746151.1| hypothetical protein MCAN_27241... 309 9e-83 gi|308380444|ref|ZP_07489971.2| conserved alanine rich membrane ... 292 1e-77 gi|167970079|ref|ZP_02552356.1| conserved alanine rich membrane ... 275 1e-72 gi|240169700|ref|ZP_04748359.1| hypothetical protein MkanA1_1033... 265 2e-69 gi|297732302|ref|ZP_06961420.1| hypothetical protein MtubKR_1448... 261 2e-68 gi|118618661|ref|YP_906993.1| hypothetical protein MUL_3336 [Myc... 240 5e-62 gi|296171857|ref|ZP_06852956.1| conserved alanine rich membrane ... 229 2e-58 gi|108799157|ref|YP_639354.1| hypothetical protein Mmcs_2190 [My... 221 4e-56 gi|15827497|ref|NP_301760.1| hypothetical protein ML1027 [Mycoba... 219 8e-56 gi|119868272|ref|YP_938224.1| hypothetical protein Mkms_2236 [My... 219 1e-55 gi|118473048|ref|YP_887095.1| alanine rich transmembrane protein... 212 2e-53 gi|120403456|ref|YP_953285.1| putative alanine rich transmembran... 201 4e-50 gi|315444846|ref|YP_004077725.1| hypothetical protein Mspyr1_327... 198 2e-49 gi|41408913|ref|NP_961749.1| hypothetical protein MAP2815 [Mycob... 198 2e-49 gi|145224515|ref|YP_001135193.1| hypothetical protein Mflv_3934 ... 198 2e-49 gi|342858435|ref|ZP_08715090.1| hypothetical protein MCOL_06156 ... 198 3e-49 gi|169630087|ref|YP_001703736.1| hypothetical protein MAB_3004 [... 192 1e-47 gi|254776030|ref|ZP_05217546.1| hypothetical protein MaviaA2_153... 191 4e-47 gi|333991080|ref|YP_004523694.1| alanine rich transmembrane prot... 190 7e-47 gi|254821645|ref|ZP_05226646.1| hypothetical protein MintA_17047... 184 4e-45 gi|118467103|ref|YP_882767.1| hypothetical protein MAV_3590 [Myc... 176 7e-43 gi|54025724|ref|YP_119966.1| hypothetical protein nfa37540 [Noca... 165 2e-39 gi|312139439|ref|YP_004006775.1| integral membrane protein [Rhod... 150 6e-35 gi|226366222|ref|YP_002784005.1| hypothetical protein ROP_68130 ... 150 6e-35 gi|296139592|ref|YP_003646835.1| hypothetical protein Tpau_1883 ... 147 5e-34 gi|229491258|ref|ZP_04385084.1| putative conserved alanine rich ... 147 8e-34 gi|226306308|ref|YP_002766268.1| hypothetical protein RER_28210 ... 145 2e-33 gi|262202183|ref|YP_003273391.1| hypothetical protein Gbro_2250 ... 142 1e-32 gi|326384433|ref|ZP_08206113.1| hypothetical protein SCNU_15914 ... 142 1e-32 gi|300784512|ref|YP_003764803.1| hypothetical protein AMED_2606 ... 142 2e-32 gi|343924635|ref|ZP_08764179.1| hypothetical protein GOALK_021_0... 138 2e-31 gi|302525749|ref|ZP_07278091.1| hypothetical protein SSMG_02130 ... 138 3e-31 gi|333919437|ref|YP_004493018.1| hypothetical protein AS9A_1769 ... 137 4e-31 gi|305680929|ref|ZP_07403736.1| conserved hypothetical protein [... 132 2e-29 gi|225021270|ref|ZP_03710462.1| hypothetical protein CORMATOL_01... 132 2e-29 gi|134098385|ref|YP_001104046.1| hypothetical protein SACE_1806 ... 129 1e-28 gi|291006913|ref|ZP_06564886.1| hypothetical protein SeryN2_2052... 128 3e-28 gi|300781036|ref|ZP_07090890.1| conserved alanine rich transmemb... 125 2e-27 gi|111023786|ref|YP_706758.1| hypothetical protein RHA1_ro06828 ... 124 6e-27 gi|334564692|ref|ZP_08517683.1| hypothetical protein CbovD2_0895... 122 2e-26 gi|68536160|ref|YP_250865.1| hypothetical protein jk1083 [Coryne... 121 4e-26 gi|257056417|ref|YP_003134249.1| hypothetical protein Svir_24270... 120 6e-26 gi|213964581|ref|ZP_03392781.1| probable conserved alanine rich ... 120 6e-26 gi|38233986|ref|NP_939753.1| hypothetical protein DIP1401 [Coryn... 120 8e-26 gi|25028356|ref|NP_738410.1| hypothetical protein CE1800 [Coryne... 119 1e-25 gi|259507411|ref|ZP_05750311.1| membrane protein [Corynebacteriu... 119 1e-25 gi|145295810|ref|YP_001138631.1| hypothetical protein cgR_1735 [... 117 4e-25 gi|62390745|ref|YP_226147.1| hypothetical protein cg2087 [Coryne... 117 7e-25 >gi|308371100|ref|ZP_07423827.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis SUMu003] gi|308372369|ref|ZP_07428423.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis SUMu004] gi|308373478|ref|ZP_07432487.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis SUMu005] 13 more sequence titles Length=173 Score = 313 bits (801), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG Sbjct 13 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 72 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY Sbjct 73 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 132 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS Sbjct 133 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 173 >gi|15609835|ref|NP_217214.1| alanine rich transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15842236|ref|NP_337273.1| hypothetical protein MT2772 [Mycobacterium tuberculosis CDC1551] gi|31793870|ref|NP_856363.1| alanine rich transmembrane protein [Mycobacterium bovis AF2122/97] 54 more sequence titles Length=161 Score = 311 bits (797), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +SGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG Sbjct 1 MSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY Sbjct 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS Sbjct 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 >gi|340627699|ref|YP_004746151.1| hypothetical protein MCAN_27241 [Mycobacterium canettii CIPT 140010059] gi|340005889|emb|CCC45055.1| putative conserved alanine rich transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=161 Score = 309 bits (792), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 159/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +SGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG Sbjct 1 MSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY Sbjct 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAWVGPMVLVVLDDP+DPTPYWLVSCRHPERVLSALRS Sbjct 121 VLHRAWVGPMVLVVLDDPDDPTPYWLVSCRHPERVLSALRS 161 >gi|308380444|ref|ZP_07489971.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis SUMu011] gi|308361445|gb|EFP50296.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis SUMu011] Length=151 Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 150/151 (99%), Positives = 151/151 (100%), Gaps = 0/151 (0%) Query 11 VRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEI 70 +RYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEI Sbjct 1 MRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEI 60 Query 71 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM 130 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM Sbjct 61 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM 120 Query 131 VLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLVVLDDPNDPTPYWLVSCRHPERVLSALRS Sbjct 121 VLVVLDDPNDPTPYWLVSCRHPERVLSALRS 151 >gi|167970079|ref|ZP_02552356.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis H37Ra] gi|294994209|ref|ZP_06799900.1| hypothetical protein Mtub2_06773 [Mycobacterium tuberculosis 210] Length=143 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%) Query 19 VPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSAD 78 +PWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSAD Sbjct 1 MPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSAD 60 Query 79 GAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDP 138 GAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDP Sbjct 61 GAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDP 120 Query 139 NDPTPYWLVSCRHPERVLSALRS 161 NDPTPYWLVSCRHPERVLSALRS Sbjct 121 NDPTPYWLVSCRHPERVLSALRS 143 >gi|240169700|ref|ZP_04748359.1| hypothetical protein MkanA1_10332 [Mycobacterium kansasii ATCC 12478] Length=158 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/161 (84%), Positives = 146/161 (91%), Gaps = 3/161 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +SGTR+APHSVRYRERL VPWWWWPL FA AALIAFEVN+G+AALPDW+PFATLF VAAG Sbjct 1 MSGTRVAPHSVRYRERLRVPWWWWPLGFAAAALIAFEVNMGIAALPDWLPFATLFAVAAG 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 TLLWLGRVEIRVTA D GV+LWAG AHLPV V++RSAE+ TAKSAALGRQLDPAA+ Sbjct 61 TLLWLGRVEIRVTA---DQTGVELWAGAAHLPVGVVSRSAEVARTAKSAALGRQLDPAAF 117 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAW+GPMVL+VLDDP DPTPYWLVSCRHPERVLSAL S Sbjct 118 VLHRAWIGPMVLLVLDDPEDPTPYWLVSCRHPERVLSALTS 158 >gi|297732302|ref|ZP_06961420.1| hypothetical protein MtubKR_14489 [Mycobacterium tuberculosis KZN R506] gi|313659635|ref|ZP_07816515.1| hypothetical protein MtubKV_14494 [Mycobacterium tuberculosis KZN V2475] Length=136 Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 135/136 (99%), Positives = 136/136 (100%), Gaps = 0/136 (0%) Query 26 LAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSADGAGVKLW 85 +AFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSADGAGVKLW Sbjct 1 MAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSADGAGVKLW 60 Query 86 AGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDPNDPTPYW 145 AGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDPNDPTPYW Sbjct 61 AGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDPNDPTPYW 120 Query 146 LVSCRHPERVLSALRS 161 LVSCRHPERVLSALRS Sbjct 121 LVSCRHPERVLSALRS 136 >gi|118618661|ref|YP_906993.1| hypothetical protein MUL_3336 [Mycobacterium ulcerans Agy99] gi|183982030|ref|YP_001850321.1| hypothetical protein MMAR_2016 [Mycobacterium marinum M] gi|118570771|gb|ABL05522.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] gi|183175356|gb|ACC40466.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=159 Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 138/161 (86%), Positives = 147/161 (92%), Gaps = 2/161 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR+APHSVRYRERLWVPWWWWPL FALA LIAFEVNLG+AAL DW+P+A LFTVAA Sbjct 1 MSETRVAPHSVRYRERLWVPWWWWPLGFALAGLIAFEVNLGIAALADWLPYAILFTVAAA 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LLWLGRVEIRV AG ADG V+LWAG AHLPV VIARSAE+P TAKSAALGRQLDPAAY Sbjct 61 ALLWLGRVEIRVIAG-ADGE-VELWAGEAHLPVTVIARSAEVPRTAKSAALGRQLDPAAY 118 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAWVGPMVL+VLDDP+DPTPYWLVSCRHPERVLSALRS Sbjct 119 VLHRAWVGPMVLLVLDDPDDPTPYWLVSCRHPERVLSALRS 159 >gi|296171857|ref|ZP_06852956.1| conserved alanine rich membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893941|gb|EFG73710.1| conserved alanine rich membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=176 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/161 (82%), Positives = 141/161 (88%), Gaps = 0/161 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 VSGTR+APHSVRYRERLWVPWWWWPL F LA LIAFEVN+G+A P W+P+ATLF VAAG Sbjct 16 VSGTRVAPHSVRYRERLWVPWWWWPLGFGLAGLIAFEVNMGLAPGPAWLPYATLFAVAAG 75 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 L WLGRVEIRVTA GV+LWAG AHLPV VIARSA + +AKSAALGRQLDPAA+ Sbjct 76 ALWWLGRVEIRVTADPKVPGGVELWAGEAHLPVTVIARSAAVAPSAKSAALGRQLDPAAF 135 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAWVGPMVLVVLDDP+DPTPYWLVSCRHPERVLSALRS Sbjct 136 VLHRAWVGPMVLVVLDDPDDPTPYWLVSCRHPERVLSALRS 176 >gi|108799157|ref|YP_639354.1| hypothetical protein Mmcs_2190 [Mycobacterium sp. MCS] gi|108769576|gb|ABG08298.1| putative conserved alanine rich transmembrane protein [Mycobacterium sp. MCS] Length=170 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 114/159 (72%), Positives = 125/159 (79%), Gaps = 2/159 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 VS TR +VRYRERL VPWWWW LA LIA+EVNLGV ALPDWVPFA L VAA Sbjct 12 VSDTRATTQTVRYRERLSVPWWWWLPGLGLAGLIAYEVNLGVEALPDWVPFAVLLPVAAV 71 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 L W GR EIRV G A +LW G AHLPV+V+A+SAE+P TAKSAALGRQLDPAAY Sbjct 72 VLAWFGRAEIRVVGGPA--GETELWVGDAHLPVSVVAKSAEVPRTAKSAALGRQLDPAAY 129 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 V+HRAWVGPM+L+VLDDP DPTPYWLVS RHP+RVLSAL Sbjct 130 VVHRAWVGPMILLVLDDPEDPTPYWLVSTRHPDRVLSAL 168 >gi|15827497|ref|NP_301760.1| hypothetical protein ML1027 [Mycobacterium leprae TN] gi|221229974|ref|YP_002503390.1| hypothetical protein MLBr_01027 [Mycobacterium leprae Br4923] gi|699173|gb|AAA62938.1| u1764i [Mycobacterium leprae] gi|13093047|emb|CAC31408.1| possible membrane protein [Mycobacterium leprae] gi|219933081|emb|CAR71122.1| possible membrane protein [Mycobacterium leprae Br4923] Length=157 Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 127/161 (79%), Positives = 140/161 (87%), Gaps = 4/161 (2%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +SGT +APH+VRYRERLWVPWWWWPLAFALA+LIAFEVNL A LP W+PFA VAAG Sbjct 1 MSGTPVAPHNVRYRERLWVPWWWWPLAFALASLIAFEVNLSGATLPSWLPFA----VAAG 56 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 TLLWLGRVEI+V A + G V+LWAG AHLP+ IA+SA I +AKSAALGRQLDPAAY Sbjct 57 TLLWLGRVEIQVIADAPLGGSVELWAGNAHLPITAIAQSAAISRSAKSAALGRQLDPAAY 116 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VLHRAWVGPM+LVVLDDP+DPTPYWLVSCRHPERVLSALRS Sbjct 117 VLHRAWVGPMILVVLDDPDDPTPYWLVSCRHPERVLSALRS 157 >gi|119868272|ref|YP_938224.1| hypothetical protein Mkms_2236 [Mycobacterium sp. KMS] gi|126434765|ref|YP_001070456.1| hypothetical protein Mjls_2179 [Mycobacterium sp. JLS] gi|119694361|gb|ABL91434.1| putative conserved alanine rich transmembrane protein [Mycobacterium sp. KMS] gi|126234565|gb|ABN97965.1| putative conserved alanine rich transmembrane protein [Mycobacterium sp. JLS] Length=159 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/159 (72%), Positives = 125/159 (79%), Gaps = 2/159 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR +VRYRERL VPWWWW LA LIA+EVNLGV ALPDWVPFA L VAA Sbjct 1 MSDTRATTQTVRYRERLSVPWWWWLPGLGLAGLIAYEVNLGVEALPDWVPFAVLLPVAAV 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 L W GR EIRV G A +LW G AHLPV+V+A+SAE+P TAKSAALGRQLDPAAY Sbjct 61 VLAWFGRAEIRVVGGPA--GETELWVGDAHLPVSVVAKSAEVPRTAKSAALGRQLDPAAY 118 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 V+HRAWVGPM+L+VLDDP DPTPYWLVS RHP+RVLSAL Sbjct 119 VVHRAWVGPMILLVLDDPEDPTPYWLVSTRHPDRVLSAL 157 >gi|118473048|ref|YP_887095.1| alanine rich transmembrane protein [Mycobacterium smegmatis str. MC2 155] gi|118174335|gb|ABK75231.1| probable conserved alanine rich transmembrane protein [Mycobacterium smegmatis str. MC2 155] Length=159 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/161 (67%), Positives = 128/161 (80%), Gaps = 2/161 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR + RYRERLWVPWWW P+A AALIAFEV +GV+++P WVP+A L VAA Sbjct 1 MSDTRATTQTTRYRERLWVPWWWIPIAAGFAALIAFEVVMGVSSIPAWVPYAVLLPVAAA 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LLW + E+RV + S DG +LW AHLP +VIARSAE+P +AKSAALGRQLDPAAY Sbjct 61 VLLWFSKTEVRVVS-SPDGDN-ELWVNAAHLPRSVIARSAEVPKSAKSAALGRQLDPAAY 118 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 V+HRAWVGPMVLVVLDDP+DPTPYWLVS RHP+R+L+AL + Sbjct 119 VVHRAWVGPMVLVVLDDPDDPTPYWLVSTRHPDRLLAALNA 159 >gi|120403456|ref|YP_953285.1| putative alanine rich transmembrane protein [Mycobacterium vanbaalenii PYR-1] gi|119956274|gb|ABM13279.1| putative conserved alanine rich transmembrane protein [Mycobacterium vanbaalenii PYR-1] Length=159 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 102/161 (64%), Positives = 125/161 (78%), Gaps = 2/161 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR +VRYRERL VP WWW +AALIA E+N G+ ALP W+P+A L VAA Sbjct 1 MSDTRATAQTVRYRERLTVPLWWWLPGLGVAALIALEINQGIRALPGWLPYAVLLPVAAV 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LL LGR E+RV +ADG +LW G AHLP AVI+R+AE+P +AKSAALGRQLDPAAY Sbjct 61 VLLGLGRTELRVVT-AADGQ-TELWVGNAHLPTAVISRTAEVPRSAKSAALGRQLDPAAY 118 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 V+HR WVGPM L+VLDDP+DPTPYWL+S +HP++VL+ALR+ Sbjct 119 VVHRGWVGPMALLVLDDPDDPTPYWLISTKHPDKVLAALRA 159 >gi|315444846|ref|YP_004077725.1| hypothetical protein Mspyr1_32790 [Mycobacterium sp. Spyr1] gi|315263149|gb|ADT99890.1| hypothetical protein Mspyr1_32790 [Mycobacterium sp. Spyr1] Length=158 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/161 (62%), Positives = 122/161 (76%), Gaps = 3/161 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR +VRYRERLWVP WWW LAALIA EV+ GV A+PDW+P+A L VAA Sbjct 1 MSDTRATARTVRYRERLWVPLWWWLPGLGLAALIALEVDQGVRAVPDWLPYAVLLPVAAV 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 L+ LGR E++V D +LW G AHLP +V+ RSA +P +AKSAALGRQLDPAAY Sbjct 61 VLIGLGRTEVQVVG---DDGNTELWVGNAHLPASVVTRSAVVPRSAKSAALGRQLDPAAY 117 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 V+H+ WVGP+VL+VLDDP+DPTPYWL+S RHP++VL+AL S Sbjct 118 VVHKTWVGPLVLLVLDDPDDPTPYWLISARHPDKVLAALNS 158 >gi|41408913|ref|NP_961749.1| hypothetical protein MAP2815 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397272|gb|AAS05132.1| hypothetical protein MAP_2815 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458806|gb|EGO37763.1| Protein of unknown function (DUF3093) [Mycobacterium avium subsp. paratuberculosis S397] Length=161 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/160 (77%), Positives = 135/160 (85%), Gaps = 0/160 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR+APH+VRYRERLWVPWWWWP AFALA +IAFE N+GV W P+A LF VAA Sbjct 1 MSDTRVAPHNVRYRERLWVPWWWWPPAFALAGIIAFEFNMGVTRQSSWWPYAALFAVAAA 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LLWLGR+E+RVTA A V+LWAGPAHLPV IARSA + +AKSAALGRQLDPAAY Sbjct 61 ALLWLGRIEVRVTADPAAPGEVELWAGPAHLPVTAIARSAPVAPSAKSAALGRQLDPAAY 120 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALR 160 VLHRAWVGPM+LVVLDDP+DPTPYWLVSCRHPERVLSALR Sbjct 121 VLHRAWVGPMILVVLDDPDDPTPYWLVSCRHPERVLSALR 160 >gi|145224515|ref|YP_001135193.1| hypothetical protein Mflv_3934 [Mycobacterium gilvum PYR-GCK] gi|145217001|gb|ABP46405.1| putative conserved alanine rich transmembrane protein [Mycobacterium gilvum PYR-GCK] Length=158 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/161 (62%), Positives = 122/161 (76%), Gaps = 3/161 (1%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR +VRYRERLWVP WWW LAALIA EV+ GV A+PDW+P+A L VAA Sbjct 1 MSDTRATARTVRYRERLWVPLWWWLPGLGLAALIALEVDQGVRAVPDWLPYAVLLPVAAV 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 L+ LGR E++V D +LW G AHLP +V+ RSA +P +AKSAALGRQLDPAAY Sbjct 61 VLIGLGRTEVQVVG---DEGNTELWVGNAHLPASVVTRSAVVPRSAKSAALGRQLDPAAY 117 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 V+H+ WVGP+VL+VLDDP+DPTPYWL+S RHP++VL+AL S Sbjct 118 VVHKTWVGPLVLLVLDDPDDPTPYWLISARHPDKVLAALNS 158 >gi|342858435|ref|ZP_08715090.1| hypothetical protein MCOL_06156 [Mycobacterium colombiense CECT 3035] gi|342134139|gb|EGT87319.1| hypothetical protein MCOL_06156 [Mycobacterium colombiense CECT 3035] Length=161 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/159 (77%), Positives = 134/159 (85%), Gaps = 0/159 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR+APH+VRYRERLWVPWWWWP AFALA ++AFE N+GV W P+A LF VAA Sbjct 1 MSDTRVAPHNVRYRERLWVPWWWWPPAFALAGIVAFEFNMGVTRQSSWWPYAALFAVAAA 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LLWLGR+EIRVTA A V+LWAG AHLPV VI+RSAEI +AKSAALGRQLDPAAY Sbjct 61 ALLWLGRIEIRVTADPAAPGDVQLWAGQAHLPVTVISRSAEIAPSAKSAALGRQLDPAAY 120 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 VLHRAWVGPM+L VLDDP+DPTPYWLVSCRHPERVLSAL Sbjct 121 VLHRAWVGPMILAVLDDPDDPTPYWLVSCRHPERVLSAL 159 >gi|169630087|ref|YP_001703736.1| hypothetical protein MAB_3004 [Mycobacterium abscessus ATCC 19977] gi|169242054|emb|CAM63082.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=159 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/152 (66%), Positives = 117/152 (77%), Gaps = 2/152 (1%) Query 10 SVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVE 69 +RY ERLWVPWWW F A L+ EVN G+ LP WVP+ LF + AG LLW R+ Sbjct 10 DIRYLERLWVPWWWALPGFGAATLLGLEVNQGLRQLPSWVPYPILFAIVAGVLLWFSRIR 69 Query 70 IRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGP 129 + V AG DG +L AG AHLPV+VIA+SA IPATAKSAALGRQLDPAA+V+HRAW+GP Sbjct 70 VEVAAGP-DGTP-ELRAGSAHLPVSVIAKSAAIPATAKSAALGRQLDPAAFVVHRAWIGP 127 Query 130 MVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 MVLVVL+D +DPTPYWLVS RHP+R+L+ALRS Sbjct 128 MVLVVLNDADDPTPYWLVSSRHPDRLLAALRS 159 >gi|254776030|ref|ZP_05217546.1| hypothetical protein MaviaA2_15360 [Mycobacterium avium subsp. avium ATCC 25291] Length=143 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 107/143 (75%), Positives = 118/143 (83%), Gaps = 0/143 (0%) Query 19 VPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSAD 78 +PWWWWP AFALA +IAFE N+GV W P+A LF VAA LLWLGR+E+RVTA A Sbjct 1 MPWWWWPPAFALAGIIAFEFNMGVTRQSSWWPYAALFAVAAAALLWLGRIEVRVTANPAV 60 Query 79 GAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDP 138 V+LWAGPAHLPV IARSA + +AKSAALGRQLDPAAYVLHRAWVGPM+LVVLDDP Sbjct 61 PGEVELWAGPAHLPVTAIARSAPVAPSAKSAALGRQLDPAAYVLHRAWVGPMILVVLDDP 120 Query 139 NDPTPYWLVSCRHPERVLSALRS 161 +DPTPYWLVSCRHPERVLSALR Sbjct 121 DDPTPYWLVSCRHPERVLSALRG 143 >gi|333991080|ref|YP_004523694.1| alanine rich transmembrane protein [Mycobacterium sp. JDM601] gi|333487048|gb|AEF36440.1| alanine rich transmembrane protein [Mycobacterium sp. JDM601] Length=156 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 104/155 (68%), Positives = 124/155 (80%), Gaps = 3/155 (1%) Query 7 APHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLG 66 A +VRYRE+LWVPWWWWPL F L+A+EV LG+ +LP W+PFA F + LLWLG Sbjct 5 ASQTVRYREQLWVPWWWWPLGFVGNGLMAYEVRLGLRSLPGWLPFAVFFAITVAALLWLG 64 Query 67 RVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAW 126 R+++RV DG V+LW G AHLP VIARSAE+P +AKSAALGRQLDPAAYV+HR W Sbjct 65 RIQVRVV--ETDGE-VELWVGEAHLPAGVIARSAEVPQSAKSAALGRQLDPAAYVVHRGW 121 Query 127 VGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 VGPMVL+VLDDP+DPTPYWLVSCRHP+RVL+AL+ Sbjct 122 VGPMVLIVLDDPDDPTPYWLVSCRHPQRVLAALQG 156 >gi|254821645|ref|ZP_05226646.1| hypothetical protein MintA_17047 [Mycobacterium intracellulare ATCC 13950] Length=161 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/159 (75%), Positives = 133/159 (84%), Gaps = 0/159 (0%) Query 1 VSGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAG 60 +S TR+APH+VRYRERLWVPWWWWP A ALA ++AFE N+GV W P+A LF VAA Sbjct 1 MSDTRVAPHNVRYRERLWVPWWWWPPALALAGILAFEFNMGVTRHSSWWPYAALFAVAAA 60 Query 61 TLLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LLWLGRVEIRVTA + V+LWAGPAHLPV IARSA++ +AKSAALGRQLDPAAY Sbjct 61 ALLWLGRVEIRVTANPSAPGEVELWAGPAHLPVTAIARSAQVAPSAKSAALGRQLDPAAY 120 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 VLHRAWV PM+L+VLDDP+DPTPYWLVSCRHPERVLSAL Sbjct 121 VLHRAWVAPMILIVLDDPDDPTPYWLVSCRHPERVLSAL 159 >gi|118467103|ref|YP_882767.1| hypothetical protein MAV_3590 [Mycobacterium avium 104] gi|118168390|gb|ABK69287.1| conserved hypothetical protein [Mycobacterium avium 104] Length=145 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 101/134 (76%), Positives = 111/134 (83%), Gaps = 0/134 (0%) Query 27 AFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSADGAGVKLWA 86 AFALA +IAFE N+GV W P+A LF VAA LLWLGR+E+RVTA A V+LWA Sbjct 11 AFALAGIIAFEFNMGVTRQSSWWPYAALFAVAAAALLWLGRIEVRVTANPAVPGEVELWA 70 Query 87 GPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDPNDPTPYWL 146 GPAHLPV IARSA + +AKSAALGRQLDPAAYVLHRAWVGPM+LVVLDDP+DPTPYWL Sbjct 71 GPAHLPVTAIARSAPVAPSAKSAALGRQLDPAAYVLHRAWVGPMILVVLDDPDDPTPYWL 130 Query 147 VSCRHPERVLSALR 160 VSCRHPERVLSALR Sbjct 131 VSCRHPERVLSALR 144 >gi|54025724|ref|YP_119966.1| hypothetical protein nfa37540 [Nocardia farcinica IFM 10152] gi|54017232|dbj|BAD58602.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=176 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/156 (57%), Positives = 110/156 (71%), Gaps = 4/156 (2%) Query 5 RLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLW 64 R P YRERLWVPWWWWP+ +A L+A E+++G L W+P+A LF V LLW Sbjct 18 RRDPTVHTYRERLWVPWWWWPIGLGVAGLLAAEIHMGAPGLRAWLPYALLFPVPVWVLLW 77 Query 65 LGRVEIRVTAGSADGAGV-KLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLH 123 + R + V + D +G +L AHLPV +AR+A + +AKSAALGRQLDPAAYV H Sbjct 78 MSRHRLEV---APDASGTPELRVDRAHLPVNFVARAAVVAPSAKSAALGRQLDPAAYVQH 134 Query 124 RAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 R WVGPMVL+VL+DP+DPTPYWLVS R P+RVL+AL Sbjct 135 RPWVGPMVLLVLNDPDDPTPYWLVSARRPDRVLAAL 170 >gi|312139439|ref|YP_004006775.1| integral membrane protein [Rhodococcus equi 103S] gi|311888778|emb|CBH48090.1| putative integral membrane protein [Rhodococcus equi 103S] Length=169 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 77/147 (53%), Positives = 100/147 (69%), Gaps = 4/147 (2%) Query 13 YRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRV 72 Y ERLWVP WWWP +A L+A E+++G + W+P+ LF LLW+ R+ I V Sbjct 19 YSERLWVPLWWWPAGLFIAGLLAAEIHMGSPGVRAWLPYVLLFPFPVWALLWVSRLRIEV 78 Query 73 TAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVL 132 DG +L G AHLP++VI+R+A IP +AKSAALGRQLDPAA+V +R+WV L Sbjct 79 F----DGPDAELRVGRAHLPLSVISRTATIPPSAKSAALGRQLDPAAFVTNRSWVKQTAL 134 Query 133 VVLDDPNDPTPYWLVSCRHPERVLSAL 159 +VLDDP DPTPYWLVS R P +L+A+ Sbjct 135 IVLDDPEDPTPYWLVSTRRPAELLAAI 161 >gi|226366222|ref|YP_002784005.1| hypothetical protein ROP_68130 [Rhodococcus opacus B4] gi|226244712|dbj|BAH55060.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=173 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 84/151 (56%), Positives = 103/151 (69%), Gaps = 3/151 (1%) Query 11 VRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEI 70 V Y ERLWVP WWW + +A L+A EV++G L W+P+ L + L+WL R+ + Sbjct 18 VLYSERLWVPVWWWAVGLFVAGLLAAEVHMGAPGLRAWLPYVLLLPLPVWGLVWLSRLRV 77 Query 71 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM 130 V + +GV L G AHLPV VIAR AE+P +AKSAALGRQLDPAA+V HR WV PM Sbjct 78 EVVR---EPSGVHLRVGQAHLPVDVIARVAEVPGSAKSAALGRQLDPAAFVQHRVWVKPM 134 Query 131 VLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 L+VLDDP DPTPYWLVS R P +L+AL S Sbjct 135 ALIVLDDPEDPTPYWLVSTRRPAELLAALDS 165 >gi|296139592|ref|YP_003646835.1| hypothetical protein Tpau_1883 [Tsukamurella paurometabola DSM 20162] gi|296027726|gb|ADG78496.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=157 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/151 (53%), Positives = 101/151 (67%), Gaps = 8/151 (5%) Query 10 SVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALP-DWVPFATLFTVAAGTLLWLGRV 68 S Y ERL VPW+WW A +AALI +E+NL + F +F +AA L + R Sbjct 7 STGYFERLTVPWYWWLFAAGVAALICYEINLAARGASWMYALFPVVFLLAAAILWSMSRA 66 Query 69 EIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVG 128 + V G +LWAG AHLP+ VI+R+A +PA AKSAALGRQLDPAA+V HR W+ Sbjct 67 SVGVRDG-------ELWAGNAHLPLDVISRAAAVPAEAKSAALGRQLDPAAFVYHRGWIK 119 Query 129 PMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 +V VVLDDP+DPTPYWLVS RHPER+L+ + Sbjct 120 TLVAVVLDDPDDPTPYWLVSTRHPERLLACI 150 >gi|229491258|ref|ZP_04385084.1| putative conserved alanine rich transmembrane protein [Rhodococcus erythropolis SK121] gi|229321797|gb|EEN87592.1| putative conserved alanine rich transmembrane protein [Rhodococcus erythropolis SK121] Length=165 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 80/158 (51%), Positives = 103/158 (66%), Gaps = 5/158 (3%) Query 3 GTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTL 62 T P + Y ERLWVP WWW A+A L+A EV++G L ++ + L + Sbjct 10 ATTTPPSTTLYSERLWVPIWWWIAGLAVAGLLAAEVHMGRPGLLSYLAYVVLLPIPIWAA 69 Query 63 LWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYV 121 WL R+ + V + AGVK L G AHLPV +I+R+A +PA+AKSAA+GRQLDP+A+V Sbjct 70 FWLSRMRVEVV----ETAGVKELHVGRAHLPVELISRAAAVPASAKSAAMGRQLDPSAFV 125 Query 122 LHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 HR WV MVL+VLDDP DPTPYWLVS R P +L+AL Sbjct 126 QHRPWVKTMVLIVLDDPEDPTPYWLVSTRRPADLLAAL 163 >gi|226306308|ref|YP_002766268.1| hypothetical protein RER_28210 [Rhodococcus erythropolis PR4] gi|226185425|dbj|BAH33529.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=165 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/158 (50%), Positives = 103/158 (66%), Gaps = 5/158 (3%) Query 3 GTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTL 62 T P + + ERLWVP WWW A+A L+A EV++G L ++ + L + Sbjct 10 ATTTPPSTTLFSERLWVPIWWWIAGLAVAGLLAAEVHMGRPGLLSYLAYVVLLPIPIWAA 69 Query 63 LWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYV 121 WL R+ + V + AGVK L G AHLPV +I+R+A +PA+AKSAA+GRQLDP+A+V Sbjct 70 FWLSRMRVEVV----ETAGVKELHVGRAHLPVELISRAAAVPASAKSAAMGRQLDPSAFV 125 Query 122 LHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 HR WV MVL+VLDDP DPTPYWLVS R P +L+AL Sbjct 126 QHRPWVKTMVLIVLDDPEDPTPYWLVSTRRPADLLAAL 163 >gi|262202183|ref|YP_003273391.1| hypothetical protein Gbro_2250 [Gordonia bronchialis DSM 43247] gi|262085530|gb|ACY21498.1| hypothetical protein Gbro_2250 [Gordonia bronchialis DSM 43247] Length=195 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/149 (56%), Positives = 101/149 (68%), Gaps = 7/149 (4%) Query 12 RYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLW-LGRVEI 70 RY ERL+VPWWWW A L ++ E+ L + P + + V +LW GRV I Sbjct 26 RYDERLFVPWWWWLAAAVLTGVVGHEIELAAHSSPWGLLGYPVTAVLCAAVLWSAGRVRI 85 Query 71 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM 130 VTA DG +L A A LP +VIAR A IPA+AKSAALGRQLDPAA+++HRAWV M Sbjct 86 SVTA---DG---ELQANRARLPRSVIARGASIPASAKSAALGRQLDPAAFLVHRAWVKTM 139 Query 131 VLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 +LVVLDDP+DPTPYWLVS RHP +L+AL Sbjct 140 ILVVLDDPDDPTPYWLVSTRHPAELLAAL 168 >gi|326384433|ref|ZP_08206113.1| hypothetical protein SCNU_15914 [Gordonia neofelifaecis NRRL B-59395] gi|326196778|gb|EGD53972.1| hypothetical protein SCNU_15914 [Gordonia neofelifaecis NRRL B-59395] Length=177 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/157 (54%), Positives = 100/157 (64%), Gaps = 13/157 (8%) Query 7 APHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLW-- 64 A RYRERL VPWWWW A+ A+ +EV L P W A + + AG + W Sbjct 9 AQQQDRYRERLIVPWWWWLAGLAVTAIFGYEVQLAAYRQP-WSIVA--YPIIAGLIAWGL 65 Query 65 --LGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVL 122 +GR +RV ADGA L AG A LP VIAR A + A +SAA+GRQLDPAA+VL Sbjct 66 YSMGRTPVRV---DADGA---LHAGKAMLPGEVIARGAVVSAAQRSAAMGRQLDPAAFVL 119 Query 123 HRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 HR WV MVLVVLDDP+DPTPYWL+S R P +VL+AL Sbjct 120 HRTWVKTMVLVVLDDPDDPTPYWLISTREPAQVLAAL 156 >gi|300784512|ref|YP_003764803.1| hypothetical protein AMED_2606 [Amycolatopsis mediterranei U32] gi|299794026|gb|ADJ44401.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340525933|gb|AEK41138.1| hypothetical protein RAM_13240 [Amycolatopsis mediterranei S699] Length=160 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/160 (49%), Positives = 93/160 (59%), Gaps = 4/160 (2%) Query 2 SGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGT 61 S A +VR+ ERL+VPWW WPL A L+A E++LG + W+P+ V Sbjct 4 SAKTAANAAVRHSERLYVPWWGWPLPVLGAVLLAAEIDLGYPGIRAWLPYVIALPVVVAL 63 Query 62 LLWLGRVEIRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYV 121 LL LGR ++R+T G +LW G AHLP+ AK ALGR DPAAYV Sbjct 64 LLSLGRSKVRITGGDEP----ELWVGDAHLPLRYAGEVEIFDKEAKRKALGRDGDPAAYV 119 Query 122 LHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 LHR WVGP+V V L D NDPTPYWL S RHPERV L+ Sbjct 120 LHRGWVGPVVKVRLTDANDPTPYWLFSTRHPERVAELLKG 159 >gi|343924635|ref|ZP_08764179.1| hypothetical protein GOALK_021_00130 [Gordonia alkanivorans NBRC 16433] gi|343765435|dbj|GAA11105.1| hypothetical protein GOALK_021_00130 [Gordonia alkanivorans NBRC 16433] Length=184 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/149 (54%), Positives = 97/149 (66%), Gaps = 9/149 (6%) Query 13 YRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTL-LW-LGRVEI 70 + ERL VPWWWW A + ++ +E+ L A W + T G L LW +GR + Sbjct 29 FDERLHVPWWWWLAAAVVTGVVGYEIQLS-AHGSKWSVIGYIVTAILGVLVLWSMGRTRV 87 Query 71 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM 130 RVTA +L A A LP AV+AR A IPATAKSAALGRQLDPAAY++HR WV M Sbjct 88 RVTADR------ELQAHRARLPRAVVARGASIPATAKSAALGRQLDPAAYLVHRFWVKTM 141 Query 131 VLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 VL+VLDDP+DPTPYWLVS R P +L+AL Sbjct 142 VLIVLDDPDDPTPYWLVSTRRPAELLAAL 170 >gi|302525749|ref|ZP_07278091.1| hypothetical protein SSMG_02130 [Streptomyces sp. AA4] gi|302434644|gb|EFL06460.1| hypothetical protein SSMG_02130 [Streptomyces sp. AA4] Length=319 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/151 (48%), Positives = 92/151 (61%), Gaps = 4/151 (2%) Query 11 VRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEI 70 V + ERL++PWW WPL A A L+ EV+LG ++P W+P A V A LL +GR ++ Sbjct 168 VAHSERLYLPWWGWPLPMAGAILLGVEVHLGYPSIPMWIPLAIAVPVMAALLLSMGRAKV 227 Query 71 RVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPM 130 +TAG +LW G AHLP+ + + AK ALGR DPAA+VLHR WVGP Sbjct 228 TITAGDD----PELWLGDAHLPLRYVGDITVVEKDAKRHALGRDADPAAFVLHRGWVGPA 283 Query 131 VLVVLDDPNDPTPYWLVSCRHPERVLSALRS 161 V + L DP DPTPYWL S R P+RV L + Sbjct 284 VRITLTDPADPTPYWLFSTRKPKRVAELLSN 314 >gi|333919437|ref|YP_004493018.1| hypothetical protein AS9A_1769 [Amycolicicoccus subflavus DQS3-9A1] gi|333481658|gb|AEF40218.1| hypothetical protein AS9A_1769 [Amycolicicoccus subflavus DQS3-9A1] Length=181 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 73/131 (56%), Positives = 92/131 (71%), Gaps = 2/131 (1%) Query 31 AALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSADGAGVKLWAGPAH 90 ++L+A + LG++ALP W+P+ L V L +L R +RVT +G L G AH Sbjct 49 SSLVATQFALGISALPAWLPYVILAPVPLWVLWYLSRTTLRVTHHGPEGPA--LHVGDAH 106 Query 91 LPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDPNDPTPYWLVSCR 150 LP +VIAR+A IP +AK AA+GRQLDPAAYV HR WV PMVLVVL+DP DPTPYWLVS R Sbjct 107 LPTSVIARTAVIPPSAKRAAMGRQLDPAAYVQHRNWVRPMVLVVLNDPEDPTPYWLVSTR 166 Query 151 HPERVLSALRS 161 PER++ A+ S Sbjct 167 RPERLVEAIDS 177 >gi|305680929|ref|ZP_07403736.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] gi|305659134|gb|EFM48634.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC 14266] Length=182 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/164 (46%), Positives = 103/164 (63%), Gaps = 8/164 (4%) Query 1 VSGTRLAPHS----VRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFT 56 VS + P++ V Y ER WVPW+WW +A + ALI+ + L AAL ++P L Sbjct 4 VSNKQAQPNTAEPKVLYSERQWVPWYWWLIAAFIVALISAQFALNRAALWLYIPAVVLSV 63 Query 57 VAAGTLLWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQL 115 +A L+WL + V D G + L G A+LP V++RS +PATAK A+GRQL Sbjct 64 LAVWVLVWLSSTSVVV---EEDPDGTRWLVTGQANLPHTVVSRSLAVPATAKRNAMGRQL 120 Query 116 DPAAYVLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 DPAA+V+ WV MV++VLDDP DPTPYWLV+ +HPE++L+A Sbjct 121 DPAAFVVSHGWVPEMVMLVLDDPEDPTPYWLVASKHPEQLLAAF 164 >gi|225021270|ref|ZP_03710462.1| hypothetical protein CORMATOL_01282 [Corynebacterium matruchotii ATCC 33806] gi|224946003|gb|EEG27212.1| hypothetical protein CORMATOL_01282 [Corynebacterium matruchotii ATCC 33806] Length=200 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/164 (46%), Positives = 103/164 (63%), Gaps = 8/164 (4%) Query 1 VSGTRLAPHS----VRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFT 56 VS + P++ V Y ER WVPW+WW +A + ALI+ + L AAL ++P L Sbjct 22 VSNKQAQPNTAEPKVLYSERQWVPWYWWLIAAFIVALISAQFALNRAALWLYIPAVVLSV 81 Query 57 VAAGTLLWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQL 115 +A L+WL + V D G + L G A+LP V++RS +PATAK A+GRQL Sbjct 82 LAVWVLVWLSSTSVVV---EEDPDGTRWLVTGQANLPHTVVSRSLAVPATAKRNAMGRQL 138 Query 116 DPAAYVLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 DPAA+V+ WV MV++VLDDP DPTPYWLV+ +HPE++L+A Sbjct 139 DPAAFVVSHGWVPEMVMLVLDDPEDPTPYWLVASKHPEQLLAAF 182 >gi|134098385|ref|YP_001104046.1| hypothetical protein SACE_1806 [Saccharopolyspora erythraea NRRL 2338] gi|133911008|emb|CAM01121.1| hypothetical protein SACE_1806 [Saccharopolyspora erythraea NRRL 2338] Length=313 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/147 (47%), Positives = 89/147 (61%), Gaps = 7/147 (4%) Query 13 YRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRV 72 +RERL+ WW WPL A L+A +V++G + W+P+ L +A LWLGR + V Sbjct 169 FRERLYASWWTWPLPVIGAVLMAAQVHMGYPGVRAWLPYVVLVPLAIAIPLWLGRTRVEV 228 Query 73 TAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVL 132 G +LWAG AHLP+ + +P K LG LDPAAYVLHRAWV V Sbjct 229 RDG-------ELWAGEAHLPLRFVEDVEVVPGRDKRRTLGPDLDPAAYVLHRAWVPTSVR 281 Query 133 VVLDDPNDPTPYWLVSCRHPERVLSAL 159 V LDDP+DPTPYW+VS R PE++ +AL Sbjct 282 VWLDDPDDPTPYWIVSTRRPEKLAAAL 308 >gi|291006913|ref|ZP_06564886.1| hypothetical protein SeryN2_20528 [Saccharopolyspora erythraea NRRL 2338] Length=170 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/148 (47%), Positives = 89/148 (61%), Gaps = 7/148 (4%) Query 12 RYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIR 71 +RERL+ WW WPL A L+A +V++G + W+P+ L +A LWLGR + Sbjct 25 EFRERLYASWWTWPLPVIGAVLMAAQVHMGYPGVRAWLPYVVLVPLAIAIPLWLGRTRVE 84 Query 72 VTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMV 131 V G +LWAG AHLP+ + +P K LG LDPAAYVLHRAWV V Sbjct 85 VRDG-------ELWAGEAHLPLRFVEDVEVVPGRDKRRTLGPDLDPAAYVLHRAWVPTSV 137 Query 132 LVVLDDPNDPTPYWLVSCRHPERVLSAL 159 V LDDP+DPTPYW+VS R PE++ +AL Sbjct 138 RVWLDDPDDPTPYWIVSTRRPEKLAAAL 165 >gi|300781036|ref|ZP_07090890.1| conserved alanine rich transmembrane protein [Corynebacterium genitalium ATCC 33030] gi|300532743|gb|EFK53804.1| conserved alanine rich transmembrane protein [Corynebacterium genitalium ATCC 33030] Length=187 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/152 (49%), Positives = 92/152 (61%), Gaps = 8/152 (5%) Query 10 SVRYRERLWVPWWWWPLAFALAALIAFE--VNLGVAALPDWVPFATLFTVAAGTLLWLGR 67 V Y ER WVP WWW A AAL+ + VN G+ W AT + A T +L Sbjct 23 EVLYSERQWVPLWWWIAGTAFAALLGAQMGVNRGM-----WWFVATFIVIGALTAWFLIH 77 Query 68 VEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAW 126 + V DG G + L G A+LP +V++RS +P +AK ALGRQLDPAAY++HRAW Sbjct 78 LSSTVVRVERDGDGTRWLVVGDANLPSSVVSRSLAVPRSAKQNALGRQLDPAAYLVHRAW 137 Query 127 VGPMVLVVLDDPNDPTPYWLVSCRHPERVLSA 158 V M L VLDDP DPTPYWLVS ++PE +L A Sbjct 138 VKEMALFVLDDPEDPTPYWLVSSKNPEELLRA 169 >gi|111023786|ref|YP_706758.1| hypothetical protein RHA1_ro06828 [Rhodococcus jostii RHA1] gi|110823316|gb|ABG98600.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=141 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 68/135 (51%), Positives = 90/135 (67%), Gaps = 3/135 (2%) Query 26 LAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRVTAGSADGAGVKLW 85 + +A L+A EV++G L W+P+ L + L+WL R+ + V + GV L Sbjct 1 MGLFVAGLLAAEVHMGAPGLRAWLPYVLLLPLPVWGLVWLSRLRVEVVE---EPNGVHLR 57 Query 86 AGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMVLVVLDDPNDPTPYW 145 G AHLP+ VI+R AE+P +AKSAALGRQLDPAA+V HR WV PM L+VLDDP DPTPYW Sbjct 58 VGQAHLPLDVISRVAEVPGSAKSAALGRQLDPAAFVQHRVWVKPMALIVLDDPEDPTPYW 117 Query 146 LVSCRHPERVLSALR 160 L+S R P +L+A+ Sbjct 118 LISTRRPAELLAAVN 132 >gi|334564692|ref|ZP_08517683.1| hypothetical protein CbovD2_08957 [Corynebacterium bovis DSM 20582] Length=179 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/153 (48%), Positives = 97/153 (64%), Gaps = 10/153 (6%) Query 11 VRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWV---PFATLFTVAAGTLLWLGR 67 V Y E VP WW LA ++ALI ++ + + P WV F + +A L W+ R Sbjct 28 VLYEETQRVPLSWWLLALGVSALIGWQSQM---SRPTWVGVVAFIVVMGLAGWALWWMSR 84 Query 68 VEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAW 126 IRV D G + L G A LP +V++R+ +P TAKSAA+GRQLDPAA+V+H+AW Sbjct 85 TRIRVVT---DDDGERWLDVGDASLPASVVSRTMVVPHTAKSAAMGRQLDPAAFVVHKAW 141 Query 127 VGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 V M L+VLDDP+DPTPYWLVS P+R+L+AL Sbjct 142 VPTMALLVLDDPDDPTPYWLVSSTAPDRLLAAL 174 >gi|68536160|ref|YP_250865.1| hypothetical protein jk1083 [Corynebacterium jeikeium K411] gi|260578857|ref|ZP_05846763.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|68263759|emb|CAI37247.1| hypothetical protein jk1083 [Corynebacterium jeikeium K411] gi|258603004|gb|EEW16275.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length=161 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/148 (44%), Positives = 92/148 (63%), Gaps = 4/148 (2%) Query 13 YRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRV 72 Y E VP WW A + A+I+++ +G +V +A L++ R ++ V Sbjct 12 YSEHQRVPLVWWLFAAGVVAIISWQAQMGRPMWAFYVGLVVSGALAVWALIYFSRTKVEV 71 Query 73 TAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMV 131 T D +G + L+ GPA LP +V++RS IP TAK AA+GRQLDPAAYV+H+ W+ M Sbjct 72 TE---DNSGERWLYVGPAKLPASVVSRSLVIPPTAKRAAMGRQLDPAAYVVHKNWIPTMA 128 Query 132 LVVLDDPNDPTPYWLVSCRHPERVLSAL 159 ++VLDDP+DPTPYWL+S + P+ VL L Sbjct 129 MLVLDDPDDPTPYWLISTKEPQEVLEKL 156 >gi|257056417|ref|YP_003134249.1| hypothetical protein Svir_24270 [Saccharomonospora viridis DSM 43017] gi|256586289|gb|ACU97422.1| hypothetical protein Svir_24270 [Saccharomonospora viridis DSM 43017] Length=171 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/150 (46%), Positives = 90/150 (60%), Gaps = 4/150 (2%) Query 10 SVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVE 69 +RY ERL+VP W WP AAL+AF+++ G +LP W+P+A L +A L LGR Sbjct 12 DLRYSERLFVPLWHWPAPLIAAALLAFQIHYGYPSLPMWLPYAVLLPLAVAVTLALGRTR 71 Query 70 IRVTAGSADGAGVKLWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGP 129 I V +LW G A+LP+ IA +P +K ALG + DPAA+ +H+ W+ Sbjct 72 IAVVEDDEP----RLWVGQANLPLRYIAAVEIVPHESKRQALGPEFDPAAFCVHKPWIRS 127 Query 130 MVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 MV V LDDP DPTPYW+ S R PERV + L Sbjct 128 MVRVHLDDPEDPTPYWIFSTRRPERVAALL 157 >gi|213964581|ref|ZP_03392781.1| probable conserved alanine rich transmembrane protein [Corynebacterium amycolatum SK46] gi|213952774|gb|EEB64156.1| probable conserved alanine rich transmembrane protein [Corynebacterium amycolatum SK46] Length=158 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/153 (45%), Positives = 93/153 (61%), Gaps = 8/153 (5%) Query 10 SVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGT--LLWLGR 67 S+ Y E+LWVPWW+W L AA+ +G P W + +A G LL + + Sbjct 8 SIVYSEKLWVPWWFWVLG--AAAVFVCTAQIGFNRSPIWFVIGGIICLAVGVWVLLTMSK 65 Query 68 VEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAW 126 + V D G + L AG A LP +V+A+S +P +A+ ALGRQLDPAA+++ W Sbjct 66 TTVSV---EVDSTGERWLHAGTAVLPASVVAKSLVVPKSAQRNALGRQLDPAAFLVTHTW 122 Query 127 VGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 + MVL+VLDDP+DPTPYWLVS RHPE +L +L Sbjct 123 IPTMVLLVLDDPDDPTPYWLVSTRHPEALLDSL 155 >gi|38233986|ref|NP_939753.1| hypothetical protein DIP1401 [Corynebacterium diphtheriae NCTC 13129] gi|38200248|emb|CAE49932.1| Putative membrane protein [Corynebacterium diphtheriae] Length=170 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/159 (46%), Positives = 96/159 (61%), Gaps = 4/159 (2%) Query 2 SGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGT 61 S A SV Y E+ WVPW WW L + ALI ++ + +AL + P L VA Sbjct 7 SAGSTADTSVIYSEKQWVPWHWWLLGAFVVALITAQLAMNRSALWLYAPAVLLTAVAVWV 66 Query 62 LLWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 LL L + I V D G + L AG A+LP +V++RS +PATAK A+GRQLDP+A+ Sbjct 67 LLSLSKTRIAV---EVDPDGTRWLVAGDANLPDSVVSRSMMVPATAKRNAMGRQLDPSAF 123 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 V+ WV MV++VL+D +DPTPYWLVS + PE +L A Sbjct 124 VVSHEWVPEMVMLVLNDDDDPTPYWLVSSKDPETLLHAF 162 >gi|25028356|ref|NP_738410.1| hypothetical protein CE1800 [Corynebacterium efficiens YS-314] gi|23493641|dbj|BAC18610.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length=183 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/158 (47%), Positives = 92/158 (59%), Gaps = 9/158 (5%) Query 3 GTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTL 62 GTR+ YRER WVPW+WW L AL+ + L L ++P L +A L Sbjct 21 GTRII-----YRERQWVPWYWWLGMAFLVALLTAQFGLNRDDLWIYIPALVLSVLAVWIL 75 Query 63 LWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYV 121 L L I V D G + L AG A+LP V++RS +PATAK A+GRQLDPAA+V Sbjct 76 LSLSSTVITV---EEDEDGTRWLIAGQANLPHDVVSRSLAVPATAKRNAMGRQLDPAAFV 132 Query 122 LHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 + WV MV++VLDDP DPTPYWL+ R PE +L A Sbjct 133 VSHGWVHEMVMLVLDDPEDPTPYWLIGSRDPEALLRAF 170 >gi|259507411|ref|ZP_05750311.1| membrane protein [Corynebacterium efficiens YS-314] gi|259165036|gb|EEW49590.1| membrane protein [Corynebacterium efficiens YS-314] Length=174 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/158 (47%), Positives = 92/158 (59%), Gaps = 9/158 (5%) Query 3 GTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTL 62 GTR+ YRER WVPW+WW L AL+ + L L ++P L +A L Sbjct 12 GTRII-----YRERQWVPWYWWLGMAFLVALLTAQFGLNRDDLWIYIPALVLSVLAVWIL 66 Query 63 LWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYV 121 L L I V D G + L AG A+LP V++RS +PATAK A+GRQLDPAA+V Sbjct 67 LSLSSTVITV---EEDEDGTRWLIAGQANLPHDVVSRSLAVPATAKRNAMGRQLDPAAFV 123 Query 122 LHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 + WV MV++VLDDP DPTPYWL+ R PE +L A Sbjct 124 VSHGWVHEMVMLVLDDPEDPTPYWLIGSRDPEALLRAF 161 >gi|145295810|ref|YP_001138631.1| hypothetical protein cgR_1735 [Corynebacterium glutamicum R] gi|140845730|dbj|BAF54729.1| hypothetical protein [Corynebacterium glutamicum R] gi|344044041|gb|EGV39722.1| hypothetical protein CgS9114_11072 [Corynebacterium glutamicum S9114] Length=183 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/159 (43%), Positives = 89/159 (56%), Gaps = 4/159 (2%) Query 2 SGTRLAPHSVRYRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGT 61 SG + YRER WVPW+WW + AL+ + L ++P L V Sbjct 15 SGNSADGVTTIYRERQWVPWYWWLAMAFVVALLTAQFGLNRNEYWIYIPAVLLSIVGVWV 74 Query 62 LLWLGRVEIRVTAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAY 120 L+ + I V D G + L AG A+LP V++RS +PATAK A+GRQLDPAA+ Sbjct 75 LVSMSNTVITV---EQDADGTRWLIAGQANLPSDVVSRSLAVPATAKRNAMGRQLDPAAF 131 Query 121 VLHRAWVGPMVLVVLDDPNDPTPYWLVSCRHPERVLSAL 159 V+ WV MV++VLDDP D TPYWL+ C+ PE +L A Sbjct 132 VVSHGWVPEMVMLVLDDPEDSTPYWLIGCKDPEALLRAF 170 >gi|62390745|ref|YP_226147.1| hypothetical protein cg2087 [Corynebacterium glutamicum ATCC 13032] gi|41326083|emb|CAF20246.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032] Length=192 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 65/148 (44%), Positives = 86/148 (59%), Gaps = 4/148 (2%) Query 13 YRERLWVPWWWWPLAFALAALIAFEVNLGVAALPDWVPFATLFTVAAGTLLWLGRVEIRV 72 YRER WVPW+WW + AL+ + L ++P L V L+ + I V Sbjct 35 YRERQWVPWYWWLAMAFVVALLTAQFGLNRNEYWIYIPAVLLSIVGVWVLVSMSNTVITV 94 Query 73 TAGSADGAGVK-LWAGPAHLPVAVIARSAEIPATAKSAALGRQLDPAAYVLHRAWVGPMV 131 D G + L AG A+LP V++RS +PATAK A+GRQLDPAA+V+ WV MV Sbjct 95 ---EQDADGTRWLIAGQANLPSDVVSRSLAVPATAKRNAMGRQLDPAAFVVSHGWVPEMV 151 Query 132 LVVLDDPNDPTPYWLVSCRHPERVLSAL 159 ++VLDDP D TPYWL+ C+ PE +L A Sbjct 152 MLVLDDPEDSTPYWLIGCKDPEALLRAF 179 Lambda K H 0.324 0.136 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131112251088 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40