BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2703 Length=528 Score E Sequences producing significant alignments: (Bits) Value gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA... 1054 0.0 gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor [Mycoba... 1053 0.0 gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis] 1051 0.0 gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SIG... 1050 0.0 gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis] >gi... 1050 0.0 gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA... 1049 0.0 gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA... 1045 0.0 gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA... 831 0.0 gi|240169695|ref|ZP_04748354.1| RNA polymerase sigma factor [Myc... 800 0.0 gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycoba... 796 0.0 gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycoba... 796 0.0 gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-... 786 0.0 gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae] 783 0.0 gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycob... 779 0.0 gi|342858430|ref|ZP_08715085.1| RNA polymerase sigma factor [Myc... 730 0.0 gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Myc... 728 0.0 gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD... 717 0.0 gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycob... 706 0.0 gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor Sig... 700 0.0 gi|289751356|ref|ZP_06510734.1| RNA polymerase sigma factor sigA... 700 0.0 gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycob... 699 0.0 gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [My... 690 0.0 gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor Sig... 686 0.0 gi|169630092|ref|YP_001703741.1| RNA polymerase sigma factor [My... 682 0.0 gi|226306303|ref|YP_002766263.1| RNA polymerase sigma factor Sig... 677 0.0 gi|229491308|ref|ZP_04385134.1| RNA polymerase sigma factor RpoD... 677 0.0 gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodo... 670 0.0 gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rh... 670 0.0 gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus... 665 0.0 gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase s... 663 0.0 gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Die... 660 0.0 gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhod... 657 0.0 gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococc... 651 0.0 gi|54025729|ref|YP_119971.1| RNA polymerase sigma factor [Nocard... 646 0.0 gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gor... 642 0.0 gi|289444245|ref|ZP_06433989.1| RNA polymerase sigma factor sigA... 640 0.0 gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Am... 640 0.0 gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Sa... 638 0.0 gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase s... 637 1e-180 gi|289575401|ref|ZP_06455628.1| RNA polymerase sigma factor sigA... 631 1e-178 gi|289758831|ref|ZP_06518209.1| predicted protein [Mycobacterium... 630 2e-178 gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS... 630 2e-178 gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Ac... 627 2e-177 gi|296393381|ref|YP_003658265.1| RpoD subfamily RNA polymerase s... 626 3e-177 gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma fa... 625 4e-177 gi|317506483|ref|ZP_07964284.1| RNA polymerase sigma factor RpoD... 625 6e-177 gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pse... 622 4e-176 gi|258653895|ref|YP_003203051.1| RNA polymerase, sigma 70 subuni... 620 2e-175 gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase s... 617 2e-174 gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [... 617 2e-174 >gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu003] gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu010] gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu012] gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu003] gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu010] gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu012] gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis CDC1551A] Length=530 Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/528 (100%), Positives = 528/528 (100%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 3 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 62 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 63 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 122 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 123 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 182 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 183 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 242 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 243 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 302 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 303 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 362 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 363 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 422 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 423 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 482 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 483 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 530 >gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Rv] gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551] gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97] 52 more sequence titles Length=528 Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/528 (99%), Positives = 528/528 (100%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis] Length=528 Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/528 (99%), Positives = 527/528 (99%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKL HPSRSQVLRDYLD Sbjct 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLHHPSRSQVLRDYLD 528 >gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum GM041182] gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum GM041182] Length=528 Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/528 (99%), Positives = 527/528 (99%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDG RAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGGRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis] gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis] Length=528 Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/528 (99%), Positives = 527/528 (99%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTG KRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGPKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C] gi|124601868|gb|EAY60878.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C] Length=528 Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/528 (99%), Positives = 527/528 (99%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNL LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLRLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17] gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17] Length=528 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/528 (99%), Positives = 524/528 (99%), Gaps = 0/528 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLP RDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPGIHHRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG Sbjct 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 >gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu001] gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu005] gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu001] gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis SUMu005] Length=413 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/413 (99%), Positives = 413/413 (100%), Gaps = 0/413 (0%) Query 116 LDSVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEA 175 +DSVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEA Sbjct 1 MDSVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEA 60 Query 176 AVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI 235 AVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI Sbjct 61 AVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI 120 Query 236 GKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHL 295 GKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHL Sbjct 121 GKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHL 180 Query 296 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 355 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI Sbjct 181 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 240 Query 356 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 415 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ Sbjct 241 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 300 Query 416 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV 475 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV Sbjct 301 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV 360 Query 476 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 361 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 413 >gi|240169695|ref|ZP_04748354.1| RNA polymerase sigma factor [Mycobacterium kansasii ATCC 12478] Length=518 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/533 (83%), Positives = 458/533 (86%), Gaps = 22/533 (4%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 VAAT+AS AT EPVKRTATKSPA K GAKR AAK+A+G+ PAKRATK A RS K Sbjct 3 VAATRASQATGEPVKRTATKSPA------KAGAKRPAAKTANGAAPAKRATKAAGRSTKT 56 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 A A D +T K +T A A A A+ A G A + AATDP ALD+ E Sbjct 57 ADATNDAEATTPKKGRTGAKAAKAPARDADAFGEALEG---------AATDPAVALDAAE 107 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDV-----APDADDDLDSGDDEDHEDLEAEA 175 +LD EPDLDV+P EDLD++ L LDDLEDDV A D DLD ED +++E+ A Sbjct 108 DLDDEPDLDVDPVEDLDIEVG-LGLDDLEDDVEGDVAAVVDDADLDP-TVEDTDEVESPA 165 Query 176 AVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI 235 APG DD+EEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI Sbjct 166 VAAPGSAVDDEEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI 225 Query 236 GKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHL 295 GKVALLNAEEEVELAKRIEAGLYATQLM E++ERGEKLPAAQRRDMMWICRDGDRAKNHL Sbjct 226 GKVALLNAEEEVELAKRIEAGLYATQLMAEMAERGEKLPAAQRRDMMWICRDGDRAKNHL 285 Query 296 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 355 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI Sbjct 286 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 345 Query 356 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 415 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ Sbjct 346 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 405 Query 416 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV 475 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV Sbjct 406 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV 465 Query 476 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 466 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 518 >gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10] Length=509 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/532 (83%), Positives = 464/532 (88%), Gaps = 27/532 (5%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKAS ATD PVKRTATKSP++ A R AAK+A+GS PAKRATK A+RS K Sbjct 1 MAATKASPATDGPVKRTATKSPSSPAK-------RPAAKAANGSAPAKRATKTASRSAK- 52 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDS-- 118 + + P +KTR++AK A AKAPSARG P D DALD+ Sbjct 53 ----SEAGAAAEPAKKTRSSAKGADAKAPSARGTKAAKGGPADP---------DALDTDG 99 Query 119 -VEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAV 177 VE+LD EPDL+ EPGEDLD+D DLNLDDLE+DVA D D D++ GD E+ ED EA A Sbjct 100 AVEDLDTEPDLEGEPGEDLDIDT-DLNLDDLEEDVAAD-DADIEPGDAEEGEDEEAAAPK 157 Query 178 APGQT-ADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIG 236 A G T AD+D+EIAEP+EKDKASGDFVWDEDESEALRQAR+DAELTASADSVRAYLKQIG Sbjct 158 AAGATVADEDDEIAEPSEKDKASGDFVWDEDESEALRQARRDAELTASADSVRAYLKQIG 217 Query 237 KVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLL 296 KVALLNAEEEVELAKRIEAGLYATQLM+E++ERGEKLPAAQRRDMMWICRDGDRAKNHLL Sbjct 218 KVALLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLL 277 Query 297 EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 356 EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT Sbjct 278 EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 337 Query 357 RAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQY 416 RAMADQARTIRIPVHMVEVINKLGRIQRELLQD GREPTPEELAKEMDITPEKVLEIQQY Sbjct 338 RAMADQARTIRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKEMDITPEKVLEIQQY 397 Query 417 AREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVR 476 AREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVR Sbjct 398 AREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVR 457 Query 477 LRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 458 LRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 509 >gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN] gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923] gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae] gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae] gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae] gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923] Length=574 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/535 (79%), Positives = 450/535 (85%), Gaps = 23/535 (4%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 V ATK S AT +PVKRTATK+PA T AKR+ K+A+GS P KRAT A+R+ K Sbjct 56 VVATKTSPATGQPVKRTATKTPA-------TPAKRSTTKAANGSAPTKRATSTASRATKS 108 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 + P+ + S K K R + KS KAPSA+ H TK A KD + DPE L++++ Sbjct 109 TTPPKASGASDAAK-KARTSVKSVDTKAPSAQDHTTKASAAKDTLN----DPEATLNTLD 163 Query 121 ------ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAE 174 +LDAEPDLDVEP ED+D+D + L+D D D++ G+ ED E A Sbjct 164 SDATADDLDAEPDLDVEPSEDIDIDI-EAADLGLDDLEDDDVVTDIEPGETEDGE---AT 219 Query 175 AAVAPGQ-TADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLK 233 AA + + DDDEEI EPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLK Sbjct 220 AATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLK 279 Query 234 QIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKN 293 QIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAKN Sbjct 280 QIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKN 339 Query 294 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 353 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ Sbjct 340 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 399 Query 354 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 413 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI Sbjct 400 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 459 Query 414 QQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAG 473 QQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAG Sbjct 460 QQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAG 519 Query 474 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 520 VVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 >gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium subsp. paratuberculosis S397] Length=496 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/519 (83%), Positives = 454/519 (88%), Gaps = 27/519 (5%) Query 14 VKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKPASAPQDTTTSTIP 73 +KRTATKSP++ A R AAK+A+GS PAKRATK A+RS K + + P Sbjct 1 MKRTATKSPSSPAK-------RPAAKAANGSAPAKRATKTASRSAKSEAG-----AAAEP 48 Query 74 KRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDS---VEELDAEPDLDV 130 +KTR++AK A AKAPSARG P D DALD+ VE+LD EPDL+ Sbjct 49 AKKTRSSAKGADAKAPSARGTKAAKGGPADP---------DALDTDGAVEDLDTEPDLEG 99 Query 131 EPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQT-ADDDEEI 189 EPGEDLD+D DLNLDDLE+DVA D D D++ GD E+ ED EA A A G T AD+D+EI Sbjct 100 EPGEDLDIDT-DLNLDDLEEDVAAD-DADIEPGDAEESEDEEAAAPKAAGATVADEDDEI 157 Query 190 AEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL 249 AEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL Sbjct 158 AEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL 217 Query 250 AKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKR 309 AKRIEAGLYATQLM+E++ERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKR Sbjct 218 AKRIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKR 277 Query 310 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 369 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP Sbjct 278 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 337 Query 370 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD Sbjct 338 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 397 Query 430 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTL 489 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTL Sbjct 398 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTL 457 Query 490 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 458 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 496 >gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae] Length=576 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/536 (79%), Positives = 450/536 (84%), Gaps = 23/536 (4%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 V ATK S AT +PVKRTATK+PA T AKR+ K+A+GS P KRAT A+R+ K Sbjct 56 VVATKTSPATGQPVKRTATKTPA-------TPAKRSTTKAANGSAPTKRATSTASRATKS 108 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 + P+ + S K K R + KS KAPSA+ H TK A KD + DPE L++++ Sbjct 109 TTPPKASGASDAAK-KARTSVKSVDTKAPSAQDHTTKASAAKDTLN----DPEATLNTLD 163 Query 121 ------ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPD-ADDDLDSGDDEDHEDLEA 173 +LDAEPDLDVEP ED+D+D D DD+ D D++ G+ ED E A Sbjct 164 SDATADDLDAEPDLDVEPSEDIDIDIDIEAADLGLDDLEDDDVVTDIEPGETEDGE---A 220 Query 174 EAAVAPGQ-TADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYL 232 AA + + DDDEEI EPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYL Sbjct 221 TAATKTDEASTDDDEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYL 280 Query 233 KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAK 292 KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERG KLP AQRRDMMWICRDGDRAK Sbjct 281 KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAK 340 Query 293 NHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIR 352 NHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIR Sbjct 341 NHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIR 400 Query 353 QAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLE 412 QAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLE Sbjct 401 QAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLE 460 Query 413 IQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREA 472 IQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREA Sbjct 461 IQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREA 520 Query 473 GVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 GVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 521 GVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 576 >gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycobacterium avium 104] gi|254776035|ref|ZP_05217551.1| RNA polymerase sigma factor [Mycobacterium avium subsp. avium ATCC 25291] gi|118167081|gb|ABK67978.1| sigma factor MysA [Mycobacterium avium 104] Length=496 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/518 (81%), Positives = 444/518 (86%), Gaps = 25/518 (4%) Query 14 VKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKPASAPQDTTTSTIP 73 +KRTATKSP++ A R AAK+A+GS PAKRATK A+RS K + + P Sbjct 1 MKRTATKSPSSPAK-------RPAAKAANGSAPAKRATKTASRSAKSEAG-----AAAEP 48 Query 74 KRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDS---VEELDAEPDLDV 130 +KTR++AK A AKAPS RG P D DALD+ VE+LD EPDL+ Sbjct 49 AKKTRSSAKGADAKAPSGRGTKAAKGGPADP---------DALDTDGAVEDLDTEPDLEG 99 Query 131 EPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIA 190 EPGEDLD+D DLNLDDLE+DVA D D +E ++ A A AD+D+EIA Sbjct 100 EPGEDLDIDT-DLNLDDLEEDVAADDADIEPGDAEEGEDEEAAAPKAAGATAADEDDEIA 158 Query 191 EPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 250 EP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA Sbjct 159 EPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 218 Query 251 KRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 310 KRIEAGLYATQLM+E++ERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY Sbjct 219 KRIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 278 Query 311 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 370 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV Sbjct 279 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 338 Query 371 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 430 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE Sbjct 339 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 398 Query 431 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLD 490 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLD Sbjct 399 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLD 458 Query 491 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 459 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 496 >gi|342858430|ref|ZP_08715085.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035] gi|342134134|gb|EGT87314.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035] Length=492 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/425 (90%), Positives = 396/425 (94%), Gaps = 9/425 (2%) Query 111 DPEDALDS---VEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDED 167 DP DALDS VE+LD EPDL+ EPGEDL++DA D++LDDLED+V D D +S D D Sbjct 70 DP-DALDSDGAVEDLDNEPDLEGEPGEDLEIDA-DISLDDLEDEVTADDSDADESDADSD 127 Query 168 HEDLEAEAAVAPGQT----ADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTA 223 + E AA P + A+DDEEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTA Sbjct 128 EAEGEEVAAAKPAKAGEAAAEDDEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTA 187 Query 224 SADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMW 283 SADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEL+ERG+KLPAAQRRDM+W Sbjct 188 SADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELTERGDKLPAAQRRDMVW 247 Query 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF Sbjct 248 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 307 Query 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM Sbjct 308 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 367 Query 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV Sbjct 368 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 427 Query 464 LDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 523 L+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL Sbjct 428 LETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVL 487 Query 524 RDYLD 528 RDYLD Sbjct 488 RDYLD 492 >gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC 13950] Length=488 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/519 (80%), Positives = 435/519 (84%), Gaps = 35/519 (6%) Query 14 VKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKPASAPQDTTTSTIP 73 +KRTATKS A + AKR AAK+A+GS PAKRA K ARS K +A P Sbjct 1 MKRTATKS-------ASSPAKRPAAKAANGSAPAKRAAKTTARSTKSDAAE--------P 45 Query 74 KRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDS---VEELDAEPDLDV 130 +KTRA K A+G TK A DP DALDS VE+LD EPDL+ Sbjct 46 AKKTRA-------KGAEAKGRGTK------AAKGGPADP-DALDSDGAVEDLDNEPDLEA 91 Query 131 EPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDE-DHEDLEAEAAVAPGQTADDDEEI 189 EPGEDLD+D+ D ED + DA+ ++SGD E ++ A A AD+D+EI Sbjct 92 EPGEDLDIDSDLSLDDLEEDVASEDAE--VESGDSEVGDDEEAPAPAAAAEPAADEDDEI 149 Query 190 AEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL 249 AEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL Sbjct 150 AEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL 209 Query 250 AKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKR 309 AKRIEAGLYATQLMTE++ERG+KLPAAQRRDM WICRDGDRAKNHLLEANLRLVVSLAKR Sbjct 210 AKRIEAGLYATQLMTEMTERGDKLPAAQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKR 269 Query 310 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 369 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP Sbjct 270 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 329 Query 370 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD Sbjct 330 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 389 Query 430 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTL 489 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTL Sbjct 390 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTL 449 Query 490 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 450 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 488 >gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=503 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/533 (79%), Positives = 442/533 (83%), Gaps = 35/533 (6%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKAS ATD PVKRTATKSP+A PAKR+ AA Sbjct 1 MAATKASPATDAPVKRTATKSPSA---------------------PAKRSAAKAAHGAAA 39 Query 61 ASAPQDTTTSTIPKRKTRA---AAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALD 117 + + K + A A K AAKAPS RG AP A + L+ Sbjct 40 PAKRAAKAPARTAKPEADAEAGAKKPRAAKAPSGRGTKAAKGAPAGADVD--------LE 91 Query 118 SVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADD-DLD-SGDDEDHEDLEAEA 175 VE+LD + +LD EPGEDL++DA DL+LDDLEDDVA D +D D+D + ++ E+ A A Sbjct 92 VVEDLD-DAELDAEPGEDLEIDAGDLSLDDLEDDVAADGEDADVDPTEAEDAEEEGAAPA 150 Query 176 AVAPGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI 235 A AP ADD+EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI Sbjct 151 AAAPEAAADDEEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQI 210 Query 236 GKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHL 295 GKVALLNAEEEVELAKRIEAGLYATQLM E++ERG+KLPAAQRRDMMWICRDGDRAKNHL Sbjct 211 GKVALLNAEEEVELAKRIEAGLYATQLMAEMAERGDKLPAAQRRDMMWICRDGDRAKNHL 270 Query 296 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 355 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI Sbjct 271 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 330 Query 356 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 415 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ Sbjct 331 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 390 Query 416 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVV 475 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVV Sbjct 391 YAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVV 450 Query 476 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 451 RLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 503 >gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycobacterium vanbaalenii PYR-1] gi|119956269|gb|ABM13274.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium vanbaalenii PYR-1] Length=478 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/529 (75%), Positives = 420/529 (80%), Gaps = 52/529 (9%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKAS AT+EPVKRTA K+PA A K A ATKP A Sbjct 1 MAATKASPATEEPVKRTAAKAPAKKAPAKKAAKSAPAK-----------ATKPRA----- 44 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHE-AATDPEDALDSV 119 AKSA AP+ RG A K AP + A +D E D V Sbjct 45 --------------------AKSA--DAPATRGRAKKATAPGAVDDDLAGSDVETGDDLV 82 Query 120 EELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAP 179 E EPG+DL+++ DL LD+ ++ D D +D D++ D A A P Sbjct 83 E---------AEPGDDLEVEDTDLVLDE---ELEVDDDTAVDGDSDDEDADEGAPKAAKP 130 Query 180 GQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVA 239 + DDD +AEP+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVA Sbjct 131 AKDGDDDG-VAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVA 189 Query 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEAN 299 LLNAEEEVELAKRIEAGLYATQLM EL+++GEKLPAAQRRDMMWICRDGDRAKNHLLEAN Sbjct 190 LLNAEEEVELAKRIEAGLYATQLMAELADKGEKLPAAQRRDMMWICRDGDRAKNHLLEAN 249 Query 300 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 359 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM Sbjct 250 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 309 Query 360 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 419 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE Sbjct 310 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 369 Query 420 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRF 479 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRF Sbjct 370 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRF 429 Query 480 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 430 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 478 >gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M] gi|183175351|gb|ACC40461.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M] Length=501 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/347 (98%), Positives = 344/347 (99%), Gaps = 0/347 (0%) Query 182 TADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALL 241 T D+EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALL Sbjct 155 TPSDEEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALL 214 Query 242 NAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLR 301 NAEEEVELAKRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLR Sbjct 215 NAEEEVELAKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLR 274 Query 302 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 361 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD Sbjct 275 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 334 Query 362 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 421 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI Sbjct 335 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 394 Query 422 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 481 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL Sbjct 395 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 454 Query 482 TDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 TDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 455 TDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 >gi|289751356|ref|ZP_06510734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92] gi|289691943|gb|EFD59372.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92] Length=470 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/356 (99%), Positives = 356/356 (100%), Gaps = 0/356 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 356 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 356 >gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycobacterium ulcerans Agy99] gi|118570776|gb|ABL05527.1| RNA polymerase sigma factor SigA [Mycobacterium ulcerans Agy99] Length=501 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/344 (99%), Positives = 343/344 (99%), Gaps = 0/344 (0%) Query 185 DDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAE 244 D+EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAE Sbjct 158 DEEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAE 217 Query 245 EEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVV 304 EEVELAKRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVV Sbjct 218 EEVELAKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVV 277 Query 305 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR 364 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR Sbjct 278 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR 337 Query 365 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD 424 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD Sbjct 338 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD 397 Query 425 QTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDG 484 QTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDG Sbjct 398 QTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDG 457 Query 485 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 458 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 >gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK] gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. Spyr1] gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum PYR-GCK] gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. Spyr1] Length=488 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/528 (74%), Positives = 402/528 (77%), Gaps = 53/528 (10%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 VAATKAS ATDEPVKRTA K+PA A K R+ K Sbjct 14 VAATKASAATDEPVKRTAAKAPAKKAPAKKA------------------TKATKPRAAKS 55 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 A AP TR AK A A P E DA D Sbjct 56 ADAP-----------ATRGRAKKATAAEPGV------------VDDELTGTEVDATD--- 89 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 D+EPGEDL +D DL LDD+E + DDD D E + A A Sbjct 90 --------DIEPGEDL-VDDGDLELDDIEVEDEATEDDDSDDEAAEADPVVATTKAAAKP 140 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 DD+ + EP+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 141 AKEADDDSLPEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVAL 200 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLY TQLM E +E+GEKL AQRRD MWICRDGDRAKNHLLEANL Sbjct 201 LNAEEEVELAKRIEAGLYCTQLMAEFAEKGEKLTTAQRRDYMWICRDGDRAKNHLLEANL 260 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 261 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 320 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 321 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 380 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFG Sbjct 381 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFG 440 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 441 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 488 >gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601] gi|333487052|gb|AEF36444.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601] Length=512 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/409 (88%), Positives = 373/409 (92%), Gaps = 8/409 (1%) Query 120 EELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAP 179 EELDA+ +LD EPG D D+D DLNL+DL++D +SG DE A A Sbjct 112 EELDADTELDTEPG-DEDIDETDLNLEDLDEDAE-------ESGADEAVPAAGAATEEAG 163 Query 180 GQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVA 239 + ADDD+EIAEP+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVA Sbjct 164 EEAADDDDEIAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVA 223 Query 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEAN 299 LLNAEEEVELAKRIEAGL+ATQ M E +E+GEKL A RRDM WICRDGDRAKNHLLEAN Sbjct 224 LLNAEEEVELAKRIEAGLFATQKMAEHAEKGEKLAVAYRRDMAWICRDGDRAKNHLLEAN 283 Query 300 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 359 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM Sbjct 284 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 343 Query 360 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 419 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA+EMDITPEKVLEIQQYARE Sbjct 344 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITPEKVLEIQQYARE 403 Query 420 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRF 479 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRF Sbjct 404 PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRF 463 Query 480 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 464 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 512 >gi|169630092|ref|YP_001703741.1| RNA polymerase sigma factor [Mycobacterium abscessus ATCC 19977] gi|169242059|emb|CAM63087.1| Probable RNA polymerase sigma factor RpoD (Sigma-A) [Mycobacterium abscessus] Length=467 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/338 (98%), Positives = 338/338 (100%), Gaps = 0/338 (0%) Query 191 EPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 250 EP+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA Sbjct 130 EPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 189 Query 251 KRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 310 KRIEAGLYATQ++TEL+E+GEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY Sbjct 190 KRIEAGLYATQIVTELTEKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 249 Query 311 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 370 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV Sbjct 250 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 309 Query 371 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 430 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE Sbjct 310 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 369 Query 431 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLD 490 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLD Sbjct 370 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLD 429 Query 491 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 430 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467 >gi|226306303|ref|YP_002766263.1| RNA polymerase sigma factor SigA [Rhodococcus erythropolis PR4] gi|226185420|dbj|BAH33524.1| RNA polymerase sigma factor SigA [Rhodococcus erythropolis PR4] Length=452 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/346 (96%), Positives = 340/346 (99%), Gaps = 0/346 (0%) Query 183 ADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLN 242 +D+E AEP+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLN Sbjct 107 GEDEETAAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN 166 Query 243 AEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRL 302 AEEEVELAKRIEAGLYA Q+M +L+++GEKLPAAQRRDM WICRDG+RAKNHLLEANLRL Sbjct 167 AEEEVELAKRIEAGLYAVQIMQDLADKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRL 226 Query 303 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 362 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ Sbjct 227 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 286 Query 363 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 422 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS Sbjct 287 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 346 Query 423 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLT 482 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLT Sbjct 347 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLT 406 Query 483 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 407 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 452 >gi|229491308|ref|ZP_04385134.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121] gi|229321847|gb|EEN87642.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121] Length=430 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/346 (96%), Positives = 340/346 (99%), Gaps = 0/346 (0%) Query 183 ADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLN 242 +D+E AEP+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLN Sbjct 85 GEDEETAAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN 144 Query 243 AEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRL 302 AEEEVELAKRIEAGLYA Q+M +L+++GEKLPAAQRRDM WICRDG+RAKNHLLEANLRL Sbjct 145 AEEEVELAKRIEAGLYAVQIMQDLADKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRL 204 Query 303 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 362 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ Sbjct 205 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 264 Query 363 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 422 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS Sbjct 265 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 324 Query 423 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLT 482 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLT Sbjct 325 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLT 384 Query 483 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 385 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 430 >gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodococcus jostii RHA1] gi|110823311|gb|ABG98595.1| sigma factor, sigma 70 type, probable group 1 (principle sigma factor) [Rhodococcus jostii RHA1] Length=457 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/334 (98%), Positives = 331/334 (99%), Gaps = 0/334 (0%) Query 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 KDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE Sbjct 124 KDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 183 Query 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 AGLYATQ+M ELS+ GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYTGRG Sbjct 184 AGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRG 243 Query 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct 244 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 303 Query 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct 304 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 363 Query 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct 364 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 423 Query 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 424 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457 >gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rhodococcus opacus B4] gi|226244707|dbj|BAH55055.1| RNA polymerase sigma factor SigA [Rhodococcus opacus B4] gi|254553058|dbj|BAH85841.1| RNA polymerase sigma A factor [Rhodococcus opacus] Length=457 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/334 (98%), Positives = 331/334 (99%), Gaps = 0/334 (0%) Query 195 KDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 254 KDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE Sbjct 124 KDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 183 Query 255 AGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 314 AGLYATQ+M ELS+ GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVSLAKRYTGRG Sbjct 184 AGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRG 243 Query 315 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 374 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE Sbjct 244 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 303 Query 375 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 434 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ Sbjct 304 VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ 363 Query 435 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQ 494 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQ Sbjct 364 LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ 423 Query 495 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 424 VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457 >gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188] Length=474 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/339 (96%), Positives = 332/339 (98%), Gaps = 0/339 (0%) Query 190 AEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL 249 +EPT +DKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL Sbjct 136 SEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVEL 195 Query 250 AKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKR 309 AKRIEAGL+A + M E +E+GEKLP AQRRDM WICRDG+RAKNHLLEANLRLVVSLAKR Sbjct 196 AKRIEAGLFAVEKMRESAEKGEKLPVAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKR 255 Query 310 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 369 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP Sbjct 256 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 315 Query 370 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD Sbjct 316 VHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 375 Query 430 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTL 489 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTL Sbjct 376 EGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTL 435 Query 490 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 436 DEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 474 >gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella paurometabola DSM 20162] gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella paurometabola DSM 20162] Length=483 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/421 (83%), Positives = 362/421 (86%), Gaps = 27/421 (6%) Query 111 DPEDALDSVEELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHED 170 +PED ++EE D E D D +P E D +DV D+DD D D D Sbjct 87 NPEDG--AIEEEDVELDGDPDPTELSD------------EDVTIDSDDTAD-----DVSD 127 Query 171 LEAEAAV---APGQTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADS 227 +A++AV AP DD EP+E+DKASGDFVWDE+ESEALRQARKDAELTASADS Sbjct 128 SKAKSAVTKPAPADAEDD-----EPSEQDKASGDFVWDEEESEALRQARKDAELTASADS 182 Query 228 VRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRD 287 VRAYLKQIGKVALLNAEEEVELAKRIEAGL+A Q++ ERGEK RRDM WI RD Sbjct 183 VRAYLKQIGKVALLNAEEEVELAKRIEAGLFAEQMINRWVERGEKPAIGIRRDMNWIARD 242 Query 288 GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 347 G+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA Sbjct 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302 Query 348 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 407 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP Sbjct 303 TWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP 362 Query 408 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 467 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL Sbjct 363 EKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTL 422 Query 468 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL Sbjct 423 SEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 482 Query 528 D 528 D Sbjct 483 D 483 >gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Dietzia cinnamea P4] gi|319437300|gb|EFV92323.1| RNA polymerase sigma factor [Dietzia cinnamea P4] Length=460 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/383 (87%), Positives = 342/383 (90%), Gaps = 0/383 (0%) Query 146 DDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAEPTEKDKASGDFVWD 205 D +EDD DA D L+ D + D+E EP+ KDKASGDFVWD Sbjct 78 DVVEDDQLKDAGDALEVEPDTSELEDVEVDVEDVEDEQADEETKEEPSAKDKASGDFVWD 137 Query 206 EDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTE 265 EDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAT M + Sbjct 138 EDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATWYMAQ 197 Query 266 LSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGN 325 ++ERGEKL AQRRD WI RDG RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGN Sbjct 198 VTERGEKLTTAQRRDFKWIERDGVRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGN 257 Query 326 LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 385 LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE Sbjct 258 LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 317 Query 386 LLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV 445 LLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV Sbjct 318 LLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV 377 Query 446 VAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQ 505 VAVDAVSFTLLQDQL+SVLDTLSEREAGVVRLRFGLTDG PRTLDEIGQVYGVTRERIRQ Sbjct 378 VAVDAVSFTLLQDQLRSVLDTLSEREAGVVRLRFGLTDGLPRTLDEIGQVYGVTRERIRQ 437 Query 506 IESKTMSKLRHPSRSQVLRDYLD 528 IESKTMSKLRHPSRSQVLRDYLD Sbjct 438 IESKTMSKLRHPSRSQVLRDYLD 460 >gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhodococcus ruber] Length=447 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/383 (87%), Positives = 347/383 (91%), Gaps = 10/383 (2%) Query 146 DDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAEPTEKDKASGDFVWD 205 D+ E + A D D+ + E ED+ EAA ADD EP++KDKASGDFVWD Sbjct 75 DEFEGEEAALEDIDVAEAELEGAEDVVVEAA-----DADD-----EPSDKDKASGDFVWD 124 Query 206 EDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTE 265 E+ESEALRQARKDAEL ASADSVRAYLKQIGKVALLNAEE VELAKRIEAGLYAT + E Sbjct 125 EEESEALRQARKDAELNASADSVRAYLKQIGKVALLNAEEGVELAKRIEAGLYATYRLQE 184 Query 266 LSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGN 325 +++GEKLP AQRRD+ W CRDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGN Sbjct 185 YADKGEKLPVAQRRDLNWTCRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGN 244 Query 326 LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 385 LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE Sbjct 245 LGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 304 Query 386 LLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV 445 LLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV Sbjct 305 LLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAV 364 Query 446 VAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQ 505 VAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQ Sbjct 365 VAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQ 424 Query 506 IESKTMSKLRHPSRSQVLRDYLD 528 IESKTMSKLRH SRSQVLRDYLD Sbjct 425 IESKTMSKLRHLSRSQVLRDYLD 447 >gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S] gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC 33707] gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S] gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC 33707] Length=459 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/337 (95%), Positives = 327/337 (98%), Gaps = 0/337 (0%) Query 192 PTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 251 P+EKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK Sbjct 123 PSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 182 Query 252 RIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYT 311 RIEAGL+AT M E++E+GEK RR++ WI RDG+RAKNHLLEANLRLVVSLAKRYT Sbjct 183 RIEAGLFATHKMNEMAEKGEKPSPTDRRNLNWITRDGNRAKNHLLEANLRLVVSLAKRYT 242 Query 312 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 371 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH Sbjct 243 GRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVH 302 Query 372 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 431 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG Sbjct 303 MVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 362 Query 432 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDE 491 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDE Sbjct 363 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 422 Query 492 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 423 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 459 >gi|54025729|ref|YP_119971.1| RNA polymerase sigma factor [Nocardia farcinica IFM 10152] gi|54017237|dbj|BAD58607.1| putative principal sigma factor [Nocardia farcinica IFM 10152] Length=454 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/332 (96%), Positives = 322/332 (97%), Gaps = 0/332 (0%) Query 197 KASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAG 256 KASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAG Sbjct 123 KASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAG 182 Query 257 LYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMA 316 LYA + M E +E GEKLP A RRD WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMA Sbjct 183 LYAAEKMREFAESGEKLPVAMRRDYNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMA 242 Query 317 FLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVI 376 FLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVI Sbjct 243 FLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVI 302 Query 377 NKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLG 436 NKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLG Sbjct 303 NKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLG 362 Query 437 DFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVY 496 DFIEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVY Sbjct 363 DFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVY 422 Query 497 GVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 GVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 423 GVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 454 >gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395] gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395] Length=466 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/393 (85%), Positives = 350/393 (90%), Gaps = 10/393 (2%) Query 137 DLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLE-AEAAVAPGQTADDDEEIAEPTEK 195 DLD A LDD++D AD DL +D+D ED + A+ A G A+ ++ Sbjct 83 DLDTAGEGLDDVDDSQIDLADSDLIVDEDDDAEDEKPAKPAKGRG---------AKAKKE 133 Query 196 DKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEA 255 D+A DFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEA Sbjct 134 DEAKPDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEA 193 Query 256 GLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGM 315 GL+AT+ + + E GEKL AQRRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGM Sbjct 194 GLFATERLRRVMESGEKLSVAQRRDLSWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGM 253 Query 316 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV Sbjct 254 AFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 313 Query 376 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 435 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL Sbjct 314 INKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQL 373 Query 436 GDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQV 495 GDFIEDSEAVVAVDAVSFTLLQDQLQ VLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQV Sbjct 374 GDFIEDSEAVVAVDAVSFTLLQDQLQDVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQV 433 Query 496 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 434 YGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466 >gi|289444245|ref|ZP_06433989.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46] gi|289417164|gb|EFD14404.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46] Length=375 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/330 (99%), Positives = 330/330 (100%), Gaps = 0/330 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIR 330 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIR Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIR 330 >gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1] gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1] Length=503 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/450 (76%), Positives = 367/450 (82%), Gaps = 28/450 (6%) Query 81 AKSAAAKAPSARGHATKPRAPKDAQHEA--ATDPEDALDSVEELDAEPDLDVEPGEDLDL 138 A+ AA K + G ATK K AQ A AT+P ++D+ E + D+EPGEDL Sbjct 80 ARRAAKKTTRSEG-ATKKAPRKTAQKAAPSATEPA-SVDADAEAEENGLPDIEPGEDL-- 135 Query 139 DAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAEPTEKDKA 198 AD +++ D E L+A A Q + + EKD Sbjct 136 -----------------ADAEIELSDAE----LDASDAATAAQGRRRRSQAPDKDEKDP- 173 Query 199 SGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLY 258 SGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGL+ Sbjct 174 SGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLF 233 Query 259 ATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFL 318 A + M +E GEK+ R+++ W+ RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFL Sbjct 234 AAEKMRRFAEAGEKVAPPLRQNLSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFL 293 Query 319 DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK 378 DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK Sbjct 294 DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK 353 Query 379 LGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDF 438 LGRIQRELLQDLGREPTPEELAKEMDI+PEKVLEIQQYAREPISLDQTIGDEGDSQLGDF Sbjct 354 LGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDF 413 Query 439 IEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGV 498 IEDSEAVVAVDAVSFTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGV Sbjct 414 IEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGV 473 Query 499 TRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 TRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 474 TRERIRQIESKTMSKLRHPSRSQVLRDYLD 503 >gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338] gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338] gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL 2338] Length=467 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/335 (93%), Positives = 317/335 (95%), Gaps = 0/335 (0%) Query 194 EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 253 E KA DFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI Sbjct 133 EDGKADSDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 192 Query 254 EAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGR 313 EAGLYA + + + E E+L RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGR Sbjct 193 EAGLYAAERLRQAEEAEERLAMQMRRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGR 252 Query 314 GMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 373 GMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV Sbjct 253 GMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 312 Query 374 EVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDS 433 EVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDS Sbjct 313 EVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDS 372 Query 434 QLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIG 493 QLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRTLDEIG Sbjct 373 QLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPRTLDEIG 432 Query 494 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 433 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467 >gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia dioxanivorans CB1190] gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia dioxanivorans CB1190] Length=461 Score = 637 bits (1644), Expect = 1e-180, Method: Compositional matrix adjust. Identities = 351/468 (75%), Positives = 371/468 (80%), Gaps = 26/468 (5%) Query 66 DTTTSTIPKRKTRA----AAKSAAAKAPSAR-GHATKPRAPKDAQHEAATDPEDALDSVE 120 D ++ P R+ +A A K A K+ AR G A KP A K A +A D D Sbjct 15 DEAVASAPARRRKAGTTGAPKKTATKSTRARSGPAAKP-ATKKADGDADGDEVD------ 67 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 L+ P E GE D+ LDDLE D P+ DD D +D E + P Sbjct 68 -LEGSP----EAGE-----LEDVELDDLEVDDEPETA----DSDDSDDDDDEDDEEEEPT 113 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 T + + + K SGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 114 NTGANRRAPTTRSSQQKQSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVAL 173 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYA + + E GEK+ RRD+ WI RDG+RAKNHLLEANL Sbjct 174 LNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQLRRDLRWIVRDGERAKNHLLEANL 233 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 360 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA Sbjct 234 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 293 Query 361 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 420 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP Sbjct 294 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 353 Query 421 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFG 480 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL TLSEREAGVVRLRFG Sbjct 354 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFG 413 Query 481 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 414 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 461 >gi|289575401|ref|ZP_06455628.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis K85] gi|289539832|gb|EFD44410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis K85] Length=470 Score = 631 bits (1627), Expect = 1e-178, Method: Compositional matrix adjust. Identities = 325/327 (99%), Positives = 326/327 (99%), Gaps = 0/327 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 +AATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLG 327 RLVVSLAKRYTGRGMAFLDLIQEGN G Sbjct 301 RLVVSLAKRYTGRGMAFLDLIQEGNRG 327 >gi|289758831|ref|ZP_06518209.1| predicted protein [Mycobacterium tuberculosis T85] gi|289714395|gb|EFD78407.1| predicted protein [Mycobacterium tuberculosis T85] Length=330 Score = 630 bits (1625), Expect = 2e-178, Method: Compositional matrix adjust. Identities = 325/327 (99%), Positives = 325/327 (99%), Gaps = 0/327 (0%) Query 1 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 60 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP Sbjct 3 VAATKASTATDEPVKRTATKSPAASASGAKTGAKRTAAKSASGSPPAKRATKPAARSVKP 62 Query 61 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 120 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE Sbjct 63 ASAPQDTTTSTIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVE 122 Query 121 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 180 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG Sbjct 123 ELDAEPDLDVEPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPG 182 Query 181 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 240 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL Sbjct 183 QTADDDEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVAL 242 Query 241 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 300 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL Sbjct 243 LNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 302 Query 301 RLVVSLAKRYTGRGMAFLDLIQEGNLG 327 RLVVSLAKRYTGRGMAFLDLIQEG G Sbjct 303 RLVVSLAKRYTGRGMAFLDLIQEGLPG 329 >gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4] gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4] Length=476 Score = 630 bits (1624), Expect = 2e-178, Method: Compositional matrix adjust. Identities = 308/328 (94%), Positives = 314/328 (96%), Gaps = 0/328 (0%) Query 201 DFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAT 260 DFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA Sbjct 149 DFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAA 208 Query 261 QLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 320 + + E GEKL RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDL Sbjct 209 ERVRTAEEEGEKLVTQMRRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 268 Query 321 IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 380 IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG Sbjct 269 IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 328 Query 381 RIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 440 RIQRELLQDLGREPTPEELAKEMDI+PEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE Sbjct 329 RIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 388 Query 441 DSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTR 500 DSEAVVAVDAVSFTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTR Sbjct 389 DSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTR 448 Query 501 ERIRQIESKTMSKLRHPSRSQVLRDYLD 528 ERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 449 ERIRQIESKTMSKLRHPSRSQVLRDYLD 476 >gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827] gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema mirum DSM 43827] Length=435 Score = 627 bits (1617), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 308/329 (94%), Positives = 314/329 (96%), Gaps = 0/329 (0%) Query 200 GDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA 259 GDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA Sbjct 107 GDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA 166 Query 260 TQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLD 319 + + + EKL RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLD Sbjct 167 AERLRRAEDESEKLTPQMRRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLD 226 Query 320 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 379 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL Sbjct 227 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 286 Query 380 GRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI 439 GRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI Sbjct 287 GRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI 346 Query 440 EDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVT 499 EDSEAVVAVDAVSFTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVT Sbjct 347 EDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVT 406 Query 500 RERIRQIESKTMSKLRHPSRSQVLRDYLD 528 RERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 407 RERIRQIESKTMSKLRHPSRSQVLRDYLD 435 >gi|296393381|ref|YP_003658265.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus rotundus DSM 44985] gi|296180528|gb|ADG97434.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus rotundus DSM 44985] Length=441 Score = 626 bits (1615), Expect = 3e-177, Method: Compositional matrix adjust. Identities = 320/387 (83%), Positives = 343/387 (89%), Gaps = 3/387 (0%) Query 142 DLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIAEPTEKDKASGD 201 +L++DDLE V D D D+ DD E E P + E A+ E ++ASGD Sbjct 58 ELSMDDLEP-VESDIDIDIALEDDPIAE--EGFNGDEPEGSDAAPAEEADEEEPERASGD 114 Query 202 FVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQ 261 FVWDEDESEALRQARK+AELTASADSVRAYLKQIGKVALLNAE+EVELAKRIEAGLYA + Sbjct 115 FVWDEDESEALRQARKNAELTASADSVRAYLKQIGKVALLNAEQEVELAKRIEAGLYAQE 174 Query 262 LMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLI 321 + +E G++LP RRD+ W+ RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLI Sbjct 175 RLRIAAEEGDRLPTTSRRDLNWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLI 234 Query 322 QEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGR 381 QEGNLGLIRAVEKFDY+KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGR Sbjct 235 QEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGR 294 Query 382 IQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIED 441 IQRELLQDLGREPTPEEL +EMDI PEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIED Sbjct 295 IQRELLQDLGREPTPEELGREMDIPPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIED 354 Query 442 SEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRE 501 SEAVVAVDAVSFTLLQDQLQ+VL+TLSEREAGVVR+RFGLTDGQPRTLDEIGQVYGVTRE Sbjct 355 SEAVVAVDAVSFTLLQDQLQAVLETLSEREAGVVRMRFGLTDGQPRTLDEIGQVYGVTRE 414 Query 502 RIRQIESKTMSKLRHPSRSQVLRDYLD 528 RIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 415 RIRQIESKTMSKLRHPSRSQVLRDYLD 441 >gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei U32] gi|299794021|gb|ADJ44396.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei U32] gi|340525928|gb|AEK41133.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei S699] Length=467 Score = 625 bits (1613), Expect = 4e-177, Method: Compositional matrix adjust. Identities = 308/328 (94%), Positives = 314/328 (96%), Gaps = 0/328 (0%) Query 201 DFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAT 260 DFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA Sbjct 140 DFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYAA 199 Query 261 QLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 320 + + E GEKL RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAFLDL Sbjct 200 ERVRTAEEEGEKLVTQMRRDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 259 Query 321 IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 380 IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG Sbjct 260 IQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 319 Query 381 RIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 440 RIQRELLQDLGREPTPEELAKEMDI+PEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE Sbjct 320 RIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIE 379 Query 441 DSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTR 500 DSEAVVAVDAVSFTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTR Sbjct 380 DSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTR 439 Query 501 ERIRQIESKTMSKLRHPSRSQVLRDYLD 528 ERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 440 ERIRQIESKTMSKLRHPSRSQVLRDYLD 467 >gi|317506483|ref|ZP_07964284.1| RNA polymerase sigma factor RpoD [Segniliparus rugosus ATCC BAA-974] gi|316255244|gb|EFV14513.1| RNA polymerase sigma factor RpoD [Segniliparus rugosus ATCC BAA-974] Length=452 Score = 625 bits (1612), Expect = 6e-177, Method: Compositional matrix adjust. Identities = 303/335 (91%), Positives = 320/335 (96%), Gaps = 0/335 (0%) Query 194 EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 253 E ++ +GDFVWDEDESEALRQARK+AELTASADSVRAYLKQIGKVALLNAE+EVELAKRI Sbjct 118 EPERTAGDFVWDEDESEALRQARKNAELTASADSVRAYLKQIGKVALLNAEQEVELAKRI 177 Query 254 EAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGR 313 EAGLYA + + +E G++LP RRDM W+ RDG+RAKNHLLEANLRLVVSLAKRYTGR Sbjct 178 EAGLYAQERLRIATEEGDRLPTTSRRDMNWVVRDGNRAKNHLLEANLRLVVSLAKRYTGR 237 Query 314 GMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 373 GMAFLDLIQEGNLGLIRAVEKFDY+KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV Sbjct 238 GMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 297 Query 374 EVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDS 433 EVINKLGRIQRELLQDLGREPTPEEL +EMDI PEKVLEIQQYAREPISLDQTIGDEGDS Sbjct 298 EVINKLGRIQRELLQDLGREPTPEELGREMDIPPEKVLEIQQYAREPISLDQTIGDEGDS 357 Query 434 QLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIG 493 QLGDFIEDSEAVVAVDAVSFTLLQDQLQ+VL+TLSEREAGVVR+RFGLTDGQPRTLDEIG Sbjct 358 QLGDFIEDSEAVVAVDAVSFTLLQDQLQAVLETLSEREAGVVRMRFGLTDGQPRTLDEIG 417 Query 494 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 418 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 452 >gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1] Length=469 Score = 622 bits (1605), Expect = 4e-176, Method: Compositional matrix adjust. Identities = 345/520 (67%), Positives = 377/520 (73%), Gaps = 66/520 (12%) Query 23 AASASGAKTGAKRTAAKSASGSPPAKRAT------------KPAARSVKPASAPQDTTTS 70 AA+ S A+T + + SG+ P R T KPAAR+ KP + Sbjct 2 AAADSAARTD---STIEPTSGTAPRSRRTSAAGTTGAATAKKPAARTRKPGT-------- 50 Query 71 TIPKRKTRAAAKSAAAKAPSARGHATKPRAPKDAQHEAATDPEDALDSVEELDAEPDLDV 130 A K+A P D + D ++ Sbjct 51 ---------ATKAAPGTGPKKPAAKKASTKKADGE---------------------DAEL 80 Query 131 EPGEDLDLDAADLNLDDLEDDVAPDADDDLDSGDDEDHEDLEAEAAVAPGQTADDDEEIA 190 E G D++++ +L D+E D+A A ++ + +A T +A Sbjct 81 EDG-DVEIEDGELEEADIEADIAEAA---------QEVDAEDASDDDEDDDTNTGKNRVA 130 Query 191 EPTEKD--KASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 248 PT + + S DFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE Sbjct 131 -PTTRSSQQKSADFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 189 Query 249 LAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAK 308 LAKRIEAGLY + + +L E +KL RRD+ WI RDG+RAKNHLLEANLRLVVSLAK Sbjct 190 LAKRIEAGLYGAERIRKLFESNDKLSPQMRRDLRWIVRDGERAKNHLLEANLRLVVSLAK 249 Query 309 RYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI 368 RYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI Sbjct 250 RYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRI 309 Query 369 PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 428 PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG Sbjct 310 PVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 369 Query 429 DEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRT 488 DEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQPRT Sbjct 370 DEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPRT 429 Query 489 LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 430 LDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 469 >gi|258653895|ref|YP_003203051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella multipartita DSM 44233] gi|258557120|gb|ACV80062.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella multipartita DSM 44233] Length=448 Score = 620 bits (1599), Expect = 2e-175, Method: Compositional matrix adjust. Identities = 310/354 (88%), Positives = 326/354 (93%), Gaps = 5/354 (1%) Query 176 AVAPGQTADDDEEIAEPTEKDKASGDFVWD-EDESEALRQARKDAELTASADSVRAYLKQ 234 AVA + A D +P E S +F WD E+ESEAL+QARKDAELTASADSVRAYLKQ Sbjct 99 AVAKAKPAGKDATPDKPGE----SEEFTWDDEEESEALKQARKDAELTASADSVRAYLKQ 154 Query 235 IGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNH 294 IGKVALLNAEEEV+LAKRIEAGLY+++ M + E GE+LP RRD+ WI RDG+RAKNH Sbjct 155 IGKVALLNAEEEVDLAKRIEAGLYSSERMRQFEEAGERLPNQMRRDLRWIKRDGERAKNH 214 Query 295 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 354 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA Sbjct 215 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 274 Query 355 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQ 414 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP+KVLEIQ Sbjct 275 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQ 334 Query 415 QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGV 474 QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQ+VL TLSEREAGV Sbjct 335 QYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQAVLQTLSEREAGV 394 Query 475 VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL+ Sbjct 395 VRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLE 448 >gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus obscurus DSM 43160] gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus obscurus DSM 43160] Length=429 Score = 617 bits (1590), Expect = 2e-174, Method: Compositional matrix adjust. Identities = 303/331 (92%), Positives = 313/331 (95%), Gaps = 1/331 (0%) Query 199 SGDFVWD-EDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGL 257 GDF WD E+ESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV+LAKRIEAGL Sbjct 99 GGDFEWDDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVDLAKRIEAGL 158 Query 258 YATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAF 317 Y + + + E G+KL RRD+ WI RDG+RAKNHLLEANLRLVVSLAKRYTGRGMAF Sbjct 159 YGAERLRQAEEEGQKLSPQMRRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAF 218 Query 318 LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN 377 LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN Sbjct 219 LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN 278 Query 378 KLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGD 437 KLGRIQRELLQDLGREPTPEELAKEMDITP+KVLEIQQYAREPISLDQTIGDEGDSQLGD Sbjct 279 KLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTIGDEGDSQLGD 338 Query 438 FIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYG 497 FIEDSEAVVAVDAVSFTL+QDQL SVL TLSEREAGVVRLRFGLTDGQPRTLDEIGQVYG Sbjct 339 FIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYG 398 Query 498 VTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 VTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 399 VTRERIRQIESKTMSKLRHPSRSQVLRDYLD 429 >gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702] gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702] Length=536 Score = 617 bits (1590), Expect = 2e-174, Method: Compositional matrix adjust. Identities = 300/329 (92%), Positives = 310/329 (95%), Gaps = 0/329 (0%) Query 200 GDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYA 259 G FVWDEDES ALRQARKDAELTASADSVRAYLKQIGKVALLNAE+EV LAKRIEAGLYA Sbjct 208 GSFVWDEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYA 267 Query 260 TQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLD 319 T M ++ E GEK+ Q+RD+ I RDG +AKNHLLEANLRLVVSLAKRYTGRGMAFLD Sbjct 268 TYKMEQIKESGEKVSPMQKRDLREIDRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 327 Query 320 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 379 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL Sbjct 328 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 387 Query 380 GRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI 439 GRIQRELLQDLGREPTPEELAKEMDIT +KVLEIQQYAREPISLDQTIGDEGDSQLGDFI Sbjct 388 GRIQRELLQDLGREPTPEELAKEMDITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFI 447 Query 440 EDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVT 499 EDSEAV+AVDAVSFTLLQDQLQ VL TLSEREAGVV+LRFGLTDG PRTLDEIGQVYGVT Sbjct 448 EDSEAVIAVDAVSFTLLQDQLQDVLHTLSEREAGVVKLRFGLTDGMPRTLDEIGQVYGVT 507 Query 500 RERIRQIESKTMSKLRHPSRSQVLRDYLD 528 RERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct 508 RERIRQIESKTMSKLRHPSRSQVLRDYLD 536 Lambda K H 0.310 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1162294116864 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40