BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2704
Length=142
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609841|ref|NP_217220.1| hypothetical protein Rv2704 [Mycoba... 277 4e-73
gi|285803253|pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A ... 274 4e-72
gi|308371102|ref|ZP_07667092.1| hypothetical protein TMCG_01952 ... 266 9e-70
gi|183982023|ref|YP_001850314.1| hypothetical protein MMAR_2009 ... 197 4e-49
gi|342858429|ref|ZP_08715084.1| hypothetical protein MCOL_06126 ... 197 5e-49
gi|240169694|ref|ZP_04748353.1| hypothetical protein MkanA1_1030... 195 2e-48
gi|118618667|ref|YP_906999.1| hypothetical protein MUL_3344 [Myc... 193 8e-48
gi|254821651|ref|ZP_05226652.1| hypothetical protein MintA_17077... 191 3e-47
gi|296171843|ref|ZP_06852942.1| endoribonuclease L-PSP [Mycobact... 184 6e-45
gi|41408919|ref|NP_961755.1| hypothetical protein MAP2821 [Mycob... 180 5e-44
gi|126434758|ref|YP_001070449.1| endoribonuclease L-PSP [Mycobac... 177 4e-43
gi|254776037|ref|ZP_05217553.1| hypothetical protein MaviaA2_153... 176 1e-42
gi|108799150|ref|YP_639347.1| endoribonuclease L-PSP [Mycobacter... 174 4e-42
gi|118463786|ref|YP_882774.1| endoribonuclease L-PSP [Mycobacter... 173 8e-42
gi|120403447|ref|YP_953276.1| endoribonuclease L-PSP [Mycobacter... 158 3e-37
gi|226366312|ref|YP_002784095.1| hypothetical protein ROP_69030 ... 156 1e-36
gi|111024072|ref|YP_707044.1| YigF family translation initiation... 154 4e-36
gi|315444854|ref|YP_004077733.1| translation initiation inhibito... 154 4e-36
gi|145224523|ref|YP_001135201.1| endoribonuclease L-PSP [Mycobac... 153 7e-36
gi|302561660|ref|ZP_07314002.1| endoribonuclease L-PSP family pr... 153 1e-35
gi|169630100|ref|YP_001703749.1| hypothetical protein MAB_3017 [... 150 5e-35
gi|54022195|ref|YP_116437.1| putative endoribonuclease [Nocardia... 149 1e-34
gi|152966621|ref|YP_001362405.1| endoribonuclease L-PSP [Kineoco... 143 7e-33
gi|81301217|ref|YP_401425.1| hypothetical protein Synpcc7942_240... 139 2e-31
gi|124005087|ref|ZP_01689929.1| endoribonuclease L-PSP [Microsci... 139 2e-31
gi|56751706|ref|YP_172407.1| hypothetical protein syc1697_d [Syn... 135 2e-30
gi|229493566|ref|ZP_04387351.1| endoribonuclease L-PSP [Rhodococ... 134 6e-30
gi|226306446|ref|YP_002766406.1| hypothetical protein RER_29590 ... 132 3e-29
gi|338532911|ref|YP_004666245.1| hypothetical protein LILAB_1632... 130 6e-29
gi|325672585|ref|ZP_08152281.1| endoribonuclease L-PSP family pr... 129 2e-28
gi|334136255|ref|ZP_08509725.1| endoribonuclease L-PSP [Paenibac... 129 2e-28
gi|322371424|ref|ZP_08045973.1| hypothetical protein ZOD2009_180... 128 3e-28
gi|312139531|ref|YP_004006867.1| endoribonuclease [Rhodococcus e... 127 8e-28
gi|302035444|ref|YP_003795766.1| putative endoribonuclease L-PSP... 125 2e-27
gi|317124461|ref|YP_004098573.1| endoribonuclease L-PSP [Intrasp... 122 2e-26
gi|296128280|ref|YP_003635530.1| Endoribonuclease L-PSP [Cellulo... 122 2e-26
gi|108761507|ref|YP_634128.1| hypothetical protein MXAN_5993 [My... 122 3e-26
gi|338211655|ref|YP_004655708.1| endoribonuclease L-PSP [Runella... 118 3e-25
gi|284991653|ref|YP_003410207.1| endoribonuclease L-PSP [Geoderm... 117 4e-25
gi|15805074|ref|NP_293759.1| hypothetical protein DR_0033 [Deino... 117 5e-25
gi|336253794|ref|YP_004596901.1| endoribonuclease L-PSP [Halopig... 117 5e-25
gi|108805177|ref|YP_645114.1| endoribonuclease L-PSP [Rubrobacte... 117 7e-25
gi|226314106|ref|YP_002774002.1| hypothetical protein BBR47_4521... 115 2e-24
gi|302536877|ref|ZP_07289219.1| pyrimidine utilization protein C... 114 5e-24
gi|269127104|ref|YP_003300474.1| endoribonuclease L-PSP [Thermom... 113 1e-23
gi|325108601|ref|YP_004269669.1| endoribonuclease L-PSP [Plancto... 112 1e-23
gi|291296155|ref|YP_003507553.1| Endoribonuclease L-PSP [Meiothe... 111 3e-23
gi|257386353|ref|YP_003176126.1| endoribonuclease L-PSP [Halomic... 110 6e-23
gi|212634157|ref|YP_002310682.1| endoribonuclease L-PSP [Shewane... 110 9e-23
gi|329850643|ref|ZP_08265488.1| endoribonuclease L-PSP family pr... 109 2e-22
>gi|15609841|ref|NP_217220.1| hypothetical protein Rv2704 [Mycobacterium tuberculosis H37Rv]
gi|15842242|ref|NP_337279.1| hypothetical protein MT2777.1 [Mycobacterium tuberculosis CDC1551]
gi|31793876|ref|NP_856369.1| hypothetical protein Mb2723 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=142
Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA 60
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA
Sbjct 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA 60
Query 61 GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY 120
GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY
Sbjct 61 GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY 120
Query 121 VGSAVADRNSGAGPKDPSPAGG 142
VGSAVADRNSGAGPKDPSPAGG
Sbjct 121 VGSAVADRNSGAGPKDPSPAGG 142
>gi|285803253|pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A Member Of Highly Conserved
YjgfYER057CUK114 FAMILY, FROM MYCOBACTERIUM TUBERCULOSIS
Length=149
Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGA 62
ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGA
Sbjct 2 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGA 61
Query 63 TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVG 122
TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVG
Sbjct 62 TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVG 121
Query 123 SAVADRNSGAGPKDPSPAGG 142
SAVADRNSGAGPKDPSPAGG
Sbjct 122 SAVADRNSGAGPKDPSPAGG 141
>gi|308371102|ref|ZP_07667092.1| hypothetical protein TMCG_01952 [Mycobacterium tuberculosis SUMu003]
gi|308372371|ref|ZP_07667363.1| hypothetical protein TMDG_00418 [Mycobacterium tuberculosis SUMu004]
gi|308373481|ref|ZP_07667591.1| hypothetical protein TMEG_03383 [Mycobacterium tuberculosis SUMu005]
14 more sequence titles
Length=136
Score = 266 bits (679), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%), Gaps = 0/136 (0%)
Query 7 MVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATLAD 66
MVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATLAD
Sbjct 1 MVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATLAD 60
Query 67 VVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVA 126
VVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVA
Sbjct 61 VVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVA 120
Query 127 DRNSGAGPKDPSPAGG 142
DRNSGAGPKDPSPAGG
Sbjct 121 DRNSGAGPKDPSPAGG 136
>gi|183982023|ref|YP_001850314.1| hypothetical protein MMAR_2009 [Mycobacterium marinum M]
gi|183175349|gb|ACC40459.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=147
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/143 (75%), Positives = 117/143 (82%), Gaps = 2/143 (1%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALG 58
MS SRT++SS S+FESAVGYSRAVRIGP V VAGTTG+G DIAAQTRDALRRIE+AL
Sbjct 4 MSTSRTIISSESDFESAVGYSRAVRIGPHVAVAGTTGNGPAGDIAAQTRDALRRIEVALT 63
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
AGA+LADV+RTRIYVTDISRWREVG+VHAQ FG IRPV +MVEV+ALIAP LLVEIEAD
Sbjct 64 DAGASLADVIRTRIYVTDISRWREVGDVHAQVFGHIRPVATMVEVSALIAPDLLVEIEAD 123
Query 119 AYVGSAVADRNSGAGPKDPSPAG 141
AYV S + PK PS G
Sbjct 124 AYVQSPGGQPSPETDPKVPSGPG 146
>gi|342858429|ref|ZP_08715084.1| hypothetical protein MCOL_06126 [Mycobacterium colombiense CECT
3035]
gi|342134133|gb|EGT87313.1| hypothetical protein MCOL_06126 [Mycobacterium colombiense CECT
3035]
Length=142
Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/144 (75%), Positives = 117/144 (82%), Gaps = 4/144 (2%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALG 58
MS +RT+VSSGS FES VGYSRAVR+GP V VAGTTG+G DIAAQ RDALRRIEIAL
Sbjct 1 MSTNRTLVSSGSGFESTVGYSRAVRVGPHVAVAGTTGTGPAGDIAAQARDALRRIEIALH 60
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
QAGATL DVVRTRIYVTDISRWREVG VH Q FG +RP +MVEV+ALIAP L+VEIEAD
Sbjct 61 QAGATLTDVVRTRIYVTDISRWREVGAVHEQFFGAVRPAATMVEVSALIAPELMVEIEAD 120
Query 119 AYVGSAVADRNSGAGPKDPSPAGG 142
AYV S + GA K+PSPAGG
Sbjct 121 AYVDSPGSPLEIGA--KEPSPAGG 142
>gi|240169694|ref|ZP_04748353.1| hypothetical protein MkanA1_10302 [Mycobacterium kansasii ATCC
12478]
Length=123
Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/121 (83%), Positives = 107/121 (89%), Gaps = 0/121 (0%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA 60
MSA+R VSSGS+FESAVGYSRAVR+GP V VAGTTGSG DIAAQTRDAL RIE ALGQA
Sbjct 1 MSATRRWVSSGSDFESAVGYSRAVRVGPHVAVAGTTGSGSDIAAQTRDALHRIEAALGQA 60
Query 61 GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY 120
GA L DVVRTRIYVTDIS WREVG+VHA+ FG IRP +MVEV+ALIAPGLLVEIEADAY
Sbjct 61 GAKLGDVVRTRIYVTDISCWREVGDVHAEVFGGIRPAATMVEVSALIAPGLLVEIEADAY 120
Query 121 V 121
V
Sbjct 121 V 121
>gi|118618667|ref|YP_906999.1| hypothetical protein MUL_3344 [Mycobacterium ulcerans Agy99]
gi|118570777|gb|ABL05528.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=144
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/143 (73%), Positives = 115/143 (81%), Gaps = 2/143 (1%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALG 58
MS SRT++SS S+FESAVGYSRAVRIGP V VA TTG+G DIAAQTRDALRRIE+AL
Sbjct 1 MSTSRTIISSESDFESAVGYSRAVRIGPHVAVAETTGNGPAGDIAAQTRDALRRIEVALT 60
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
GA+LADV+RTRIYVTDISRWREVG+VHAQ FG IRPV +MVEV+ALIAP LLVEIEAD
Sbjct 61 DVGASLADVIRTRIYVTDISRWREVGDVHAQVFGHIRPVATMVEVSALIAPDLLVEIEAD 120
Query 119 AYVGSAVADRNSGAGPKDPSPAG 141
AYV S + PK PS G
Sbjct 121 AYVQSPGGQPSPETDPKVPSGPG 143
>gi|254821651|ref|ZP_05226652.1| hypothetical protein MintA_17077 [Mycobacterium intracellulare
ATCC 13950]
Length=138
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/144 (73%), Positives = 115/144 (80%), Gaps = 8/144 (5%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALG 58
MSA RT+V+SGSEFES GYSRAVR+GP V VAGTTG+G DIAAQTRDALRRI+IAL
Sbjct 1 MSAHRTVVASGSEFESVAGYSRAVRVGPHVAVAGTTGTGPAGDIAAQTRDALRRIDIALQ 60
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
QAGA+L DVVRTR+YVTDISRWREVG VH + FG IRPV +MVEV+ALIAP LLVEIEAD
Sbjct 61 QAGASLTDVVRTRLYVTDISRWREVGAVHEEVFGAIRPVATMVEVSALIAPELLVEIEAD 120
Query 119 AYVGSAVADRNSGAGPKDPSPAGG 142
AYV S V G K PS GG
Sbjct 121 AYVDSPV------TGGKAPSAPGG 138
>gi|296171843|ref|ZP_06852942.1| endoribonuclease L-PSP [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295893927|gb|EFG73696.1| endoribonuclease L-PSP [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=137
Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/123 (79%), Positives = 105/123 (86%), Gaps = 2/123 (1%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG--DDIAAQTRDALRRIEIALG 58
MSA+RT+VSS S FE VGYSRAVR+GP V VAGTTG+G DIAAQTRDALRRIEIALG
Sbjct 1 MSANRTLVSSDSAFEETVGYSRAVRVGPHVSVAGTTGAGPATDIAAQTRDALRRIEIALG 60
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
+AGA L DVVRTR+YVTDISRWREV VHA+ FG IRP +MVEV+ALIAP LLVEIEAD
Sbjct 61 RAGAALTDVVRTRVYVTDISRWREVAAVHAEFFGAIRPAATMVEVSALIAPELLVEIEAD 120
Query 119 AYV 121
AYV
Sbjct 121 AYV 123
>gi|41408919|ref|NP_961755.1| hypothetical protein MAP2821 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397278|gb|AAS05138.1| hypothetical protein MAP_2821 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458800|gb|EGO37757.1| putative translation initiation inhibitor, yjgF family [Mycobacterium
avium subsp. paratuberculosis S397]
Length=135
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/125 (77%), Positives = 104/125 (84%), Gaps = 2/125 (1%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALG 58
MS SRT+V S S FES VGY+RAVR+GP V VAGTTG+G DIAAQ RDALRRIEIAL
Sbjct 1 MSTSRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALH 60
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
QAGA LADVVR RIYVTDISRWREVG VHA+ FG IRP +MVEV+ALIAP LLVEIEAD
Sbjct 61 QAGAALADVVRNRIYVTDISRWREVGAVHAEVFGAIRPAATMVEVSALIAPELLVEIEAD 120
Query 119 AYVGS 123
AYV +
Sbjct 121 AYVAT 125
>gi|126434758|ref|YP_001070449.1| endoribonuclease L-PSP [Mycobacterium sp. JLS]
gi|126234558|gb|ABN97958.1| Endoribonuclease L-PSP [Mycobacterium sp. JLS]
Length=122
Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/122 (74%), Positives = 104/122 (86%), Gaps = 0/122 (0%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA 60
M RT SGSE+E+ VGYSRAVRIG V+VAGTTGSGDDI AQTRDALRRIE AL QA
Sbjct 1 MPGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGSGDDIVAQTRDALRRIESALIQA 60
Query 61 GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY 120
GA+L+DVVRTRIYVTDI+RWR+VG VHA+ FG +RP ++MVEV+ALI+P L VEIEADA+
Sbjct 61 GASLSDVVRTRIYVTDIARWRDVGAVHAEVFGAVRPASTMVEVSALISPDLYVEIEADAH 120
Query 121 VG 122
VG
Sbjct 121 VG 122
>gi|254776037|ref|ZP_05217553.1| hypothetical protein MaviaA2_15395 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=135
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 103/125 (83%), Gaps = 2/125 (1%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALG 58
MS +RT+V S S FES VGY+RAVR+GP V VAGTTG+G DIAAQ RDAL RIEIAL
Sbjct 1 MSGNRTVVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALCRIEIALR 60
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
QAGA LADVVRTRIYVTDISRWREVG VHA+ FG IRP +MVEV ALIAP LLVEIEAD
Sbjct 61 QAGAELADVVRTRIYVTDISRWREVGAVHAEVFGAIRPAATMVEVAALIAPELLVEIEAD 120
Query 119 AYVGS 123
AYV +
Sbjct 121 AYVAT 125
>gi|108799150|ref|YP_639347.1| endoribonuclease L-PSP [Mycobacterium sp. MCS]
gi|119868265|ref|YP_938217.1| endoribonuclease L-PSP [Mycobacterium sp. KMS]
gi|108769569|gb|ABG08291.1| Endoribonuclease L-PSP [Mycobacterium sp. MCS]
gi|119694354|gb|ABL91427.1| Endoribonuclease L-PSP [Mycobacterium sp. KMS]
Length=122
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/122 (72%), Positives = 103/122 (85%), Gaps = 0/122 (0%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA 60
M RT SGSE+E+ VGYSRAVRIG V+VAGTTG+GDDI QTRDALRRIE AL QA
Sbjct 1 MPGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGAGDDIVTQTRDALRRIESALIQA 60
Query 61 GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY 120
GA+L+DVVRTRIYVTDI+RWR+VG VHA+ FG +RP ++MVEV+ALI+P L VE+EADA+
Sbjct 61 GASLSDVVRTRIYVTDIARWRDVGAVHAEVFGAVRPASTMVEVSALISPDLYVEVEADAH 120
Query 121 VG 122
VG
Sbjct 121 VG 122
>gi|118463786|ref|YP_882774.1| endoribonuclease L-PSP [Mycobacterium avium 104]
gi|118165073|gb|ABK65970.1| endoribonuclease L-PSP [Mycobacterium avium 104]
Length=129
Score = 173 bits (439), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/119 (79%), Positives = 99/119 (84%), Gaps = 2/119 (1%)
Query 7 MVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--DIAAQTRDALRRIEIALGQAGATL 64
MV S S FES VGY+RAVR+GP V VAGTTG+G DIAAQ RDALRRIEIAL QAGA L
Sbjct 1 MVQSDSAFESDVGYARAVRVGPHVWVAGTTGAGPAGDIAAQARDALRRIEIALRQAGAEL 60
Query 65 ADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGS 123
ADVVRTRIYVTDISRWREVG VHA+ FG IRP +MVEV ALIAP LLVEIEADAYV +
Sbjct 61 ADVVRTRIYVTDISRWREVGAVHAEVFGAIRPAATMVEVAALIAPELLVEIEADAYVAT 119
>gi|120403447|ref|YP_953276.1| endoribonuclease L-PSP [Mycobacterium vanbaalenii PYR-1]
gi|119956265|gb|ABM13270.1| Endoribonuclease L-PSP [Mycobacterium vanbaalenii PYR-1]
Length=133
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/118 (73%), Positives = 97/118 (83%), Gaps = 0/118 (0%)
Query 5 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATL 64
R +SSGS FE+ VGYSRAVR+GP V VAGTT G AAQ R+AL RIE AL QAGA+L
Sbjct 13 RMNISSGSPFEAEVGYSRAVRVGPHVAVAGTTAPGAGPAAQAREALHRIEAALNQAGASL 72
Query 65 ADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVG 122
+DVVRTRIYVTDIS W EVG VHA+ FG IRPVT+MVEV+ALI+P L+VEIEADA+VG
Sbjct 73 SDVVRTRIYVTDISSWAEVGAVHAEFFGDIRPVTAMVEVSALISPELVVEIEADAFVG 130
>gi|226366312|ref|YP_002784095.1| hypothetical protein ROP_69030 [Rhodococcus opacus B4]
gi|226244802|dbj|BAH55150.1| hypothetical protein [Rhodococcus opacus B4]
Length=132
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/129 (60%), Positives = 100/129 (78%), Gaps = 7/129 (5%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG-------DDIAAQTRDALRRI 53
+ ++R +SSGSE+E +GYSRAVRIG LV V+GTT SG DD+ QTR+ALRRI
Sbjct 3 LMSNRNNISSGSEWEGKIGYSRAVRIGQLVSVSGTTASGPDGPVGGDDLVEQTREALRRI 62
Query 54 EIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLV 113
E AL +AGA+ DV+RTR+Y+TD+SRW E G H + FG+IRP T+++EV+ALIAPGLL+
Sbjct 63 EAALTEAGASTTDVIRTRMYLTDMSRWEEAGIAHGEVFGEIRPATTILEVSALIAPGLLI 122
Query 114 EIEADAYVG 122
EIEADA +G
Sbjct 123 EIEADAVIG 131
>gi|111024072|ref|YP_707044.1| YigF family translation initiation factor [Rhodococcus jostii
RHA1]
gi|110823602|gb|ABG98886.1| possible translation initiation inhibitor, YjgF family protein
[Rhodococcus jostii RHA1]
Length=141
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/127 (60%), Positives = 100/127 (79%), Gaps = 7/127 (5%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG-------DDIAAQTRDALRRIEI 55
++R VSSGSE+E+ +GYSRAVRIG LV V+GTT SG +D+ QTR+ALRRI+
Sbjct 14 SNRNNVSSGSEWEAKIGYSRAVRIGQLVSVSGTTASGPDGPVGGNDLGEQTREALRRIDA 73
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL +AGA+ DV+RTR+Y+TD+SRW E G H + FG+IRP T+++EV+ALIAPGLL+EI
Sbjct 74 ALTEAGASTTDVIRTRMYLTDMSRWEEAGIAHGEVFGEIRPATTILEVSALIAPGLLIEI 133
Query 116 EADAYVG 122
EADA +G
Sbjct 134 EADAVIG 140
>gi|315444854|ref|YP_004077733.1| translation initiation inhibitor, yjgF family [Mycobacterium
sp. Spyr1]
gi|315263157|gb|ADT99898.1| putative translation initiation inhibitor, yjgF family [Mycobacterium
sp. Spyr1]
Length=121
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/119 (67%), Positives = 92/119 (78%), Gaps = 0/119 (0%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGA 62
A R VSSGSEFE+AVGYSRAVR+G V VAGTTG GD +AQ RDAL RI ALG GA
Sbjct 2 AERINVSSGSEFEAAVGYSRAVRVGAHVFVAGTTGRGDSASAQARDALVRIAAALGDVGA 61
Query 63 TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYV 121
+L DVVRTR++VTDI+ WRE+G VH + FG +RP +MVEV ALI+P L+VEIE DA V
Sbjct 62 SLTDVVRTRMFVTDITAWREIGSVHDEVFGAVRPAATMVEVAALISPELVVEIEVDAIV 120
>gi|145224523|ref|YP_001135201.1| endoribonuclease L-PSP [Mycobacterium gilvum PYR-GCK]
gi|145217009|gb|ABP46413.1| Endoribonuclease L-PSP [Mycobacterium gilvum PYR-GCK]
Length=138
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/119 (67%), Positives = 92/119 (78%), Gaps = 0/119 (0%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGA 62
A R VSSGSEFE+AVGYSRAVR+G V VAGTTG GD +AQ RDAL RI ALG GA
Sbjct 19 AERINVSSGSEFEAAVGYSRAVRVGAHVFVAGTTGRGDSASAQARDALVRIAAALGDVGA 78
Query 63 TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYV 121
+L DVVRTR++VTDI+ WRE+G VH + FG +RP +MVEV ALI+P L+VEIE DA V
Sbjct 79 SLTDVVRTRMFVTDITAWREIGSVHDEVFGAVRPAATMVEVAALISPELVVEIEVDAIV 137
>gi|302561660|ref|ZP_07314002.1| endoribonuclease L-PSP family protein [Streptomyces griseoflavus
Tu4000]
gi|302479278|gb|EFL42371.1| endoribonuclease L-PSP family protein [Streptomyces griseoflavus
Tu4000]
gi|335346658|gb|AEH41786.1| HrmH [Streptomyces griseoflavus]
Length=140
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/128 (61%), Positives = 96/128 (75%), Gaps = 7/128 (5%)
Query 2 SASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTG-------SGDDIAAQTRDALRRIE 54
S+ R +VS GS FES GYSRAVR+GP V VAG+T GDD+ AQTR+ALRRIE
Sbjct 12 SSGRKLVSGGSRFESVFGYSRAVRVGPFVSVAGSTAMTANGPVGGDDVLAQTREALRRIE 71
Query 55 IALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVE 114
AL AGA+L DV+RTR++VTDI W +VG+VH++ FG IRP +++VEV+AL+ P LLVE
Sbjct 72 AALEDAGASLQDVMRTRVFVTDIREWEKVGQVHSEYFGHIRPASTIVEVSALVDPSLLVE 131
Query 115 IEADAYVG 122
IEADA V
Sbjct 132 IEADALVN 139
>gi|169630100|ref|YP_001703749.1| hypothetical protein MAB_3017 [Mycobacterium abscessus ATCC 19977]
gi|169242067|emb|CAM63095.1| Conserved hypothetical protein (endoribonuclease?) [Mycobacterium
abscessus]
Length=128
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/125 (65%), Positives = 93/125 (75%), Gaps = 8/125 (6%)
Query 5 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGS--------GDDIAAQTRDALRRIEIA 56
R +SS E+E+AVGYSRAVR+G + VAGTT + GDDIA QT + LRRIE A
Sbjct 3 RFRISSDGEWEAAVGYSRAVRVGAHIAVAGTTAARPNQPPAGGDDIAEQTHEVLRRIESA 62
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L Q GA+L+DVVRTRI+VTDISRWREVG VH FG IRP +MVEV+ALI P LLVEIE
Sbjct 63 LSQTGASLSDVVRTRIFVTDISRWREVGLVHGAFFGDIRPAATMVEVSALIDPALLVEIE 122
Query 117 ADAYV 121
ADA V
Sbjct 123 ADAIV 127
>gi|54022195|ref|YP_116437.1| putative endoribonuclease [Nocardia farcinica IFM 10152]
gi|54013703|dbj|BAD55073.1| putative endoribonuclease [Nocardia farcinica IFM 10152]
Length=130
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/127 (64%), Positives = 92/127 (73%), Gaps = 8/127 (6%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG--------DDIAAQTRDALRRIE 54
+ R +SS SEFE VGYSRAVRIG + V+GTT +G DDI AQ R+ALRRI
Sbjct 2 SQRVNISSASEFEDVVGYSRAVRIGDHIAVSGTTAAGPGGTAIGGDDIGAQAREALRRIG 61
Query 55 IALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVE 114
IAL +AGA+LADVVRTRI+VTDI+RW EV HA+ FG IRP SM EV ALI P LLVE
Sbjct 62 IALTEAGASLADVVRTRIFVTDIARWPEVAAAHAEVFGDIRPAASMYEVRALITPALLVE 121
Query 115 IEADAYV 121
IEADA V
Sbjct 122 IEADAVV 128
>gi|152966621|ref|YP_001362405.1| endoribonuclease L-PSP [Kineococcus radiotolerans SRS30216]
gi|151361138|gb|ABS04141.1| Endoribonuclease L-PSP [Kineococcus radiotolerans SRS30216]
Length=133
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/128 (59%), Positives = 94/128 (74%), Gaps = 8/128 (6%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG--------DDIAAQTRDALRRIE 54
+ R +VSSG+ +E VGYSRAVR+G + VAGTT +G DDIA QTR+A+RRIE
Sbjct 6 SDREVVSSGAVWEPLVGYSRAVRVGSWISVAGTTAAGPDGAPVGGDDIAEQTREAIRRIE 65
Query 55 IALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVE 114
AL Q GA L DVVRTR++VTDI+RW EVG H + F IRP +SMV+++ALI P LLVE
Sbjct 66 AALAQVGAGLGDVVRTRMFVTDITRWEEVGRAHGEFFADIRPASSMVQISALIDPRLLVE 125
Query 115 IEADAYVG 122
+EADA +G
Sbjct 126 VEADAVLG 133
>gi|81301217|ref|YP_401425.1| hypothetical protein Synpcc7942_2408 [Synechococcus elongatus
PCC 7942]
gi|81170098|gb|ABB58438.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length=128
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/126 (57%), Positives = 92/126 (74%), Gaps = 7/126 (5%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDD-------IAAQTRDALRRIEIA 56
+R +SSGS +E +GYSRAV++GP V V+GTT S D QT+ AL+ I A
Sbjct 2 TRQNISSGSAWEPVLGYSRAVKVGPYVHVSGTTASTPDGVVGLGDPYEQTKAALKTIAQA 61
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L +AGA L+DVVRTR+YVTDISRW E+G+ H + FG+IRP ++VEV+ LI+P LLVEIE
Sbjct 62 LTEAGAQLSDVVRTRLYVTDISRWEEIGKAHGEVFGEIRPAMAIVEVSQLISPELLVEIE 121
Query 117 ADAYVG 122
ADAY+G
Sbjct 122 ADAYIG 127
>gi|124005087|ref|ZP_01689929.1| endoribonuclease L-PSP [Microscilla marina ATCC 23134]
gi|123989339|gb|EAY28900.1| endoribonuclease L-PSP [Microscilla marina ATCC 23134]
Length=128
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/126 (58%), Positives = 88/126 (70%), Gaps = 8/126 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--------DIAAQTRDALRRIEI 55
+R V+SG+ +E VGYSRAV+IG L+ V+GTT D D QTR L +IE
Sbjct 2 TRVNVTSGTMWEKQVGYSRAVKIGNLIEVSGTTAVEDENRIVGIDDAYRQTRFVLEKIED 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL QAGATL DVVRTR+YVTDIS+W +G+ H + FG I P TSMVEV+ALI P LLVEI
Sbjct 62 ALNQAGATLKDVVRTRMYVTDISQWEAIGKAHNEFFGAINPATSMVEVSALINPDLLVEI 121
Query 116 EADAYV 121
EA AY+
Sbjct 122 EATAYI 127
>gi|56751706|ref|YP_172407.1| hypothetical protein syc1697_d [Synechococcus elongatus PCC 6301]
gi|56686665|dbj|BAD79887.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length=128
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/126 (56%), Positives = 91/126 (73%), Gaps = 7/126 (5%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDD-------IAAQTRDALRRIEIA 56
+R +SSGS +E +GYSRAV++GP V V+GTT S D QT+ AL+ I A
Sbjct 2 TRQNISSGSAWEPVLGYSRAVKVGPYVHVSGTTASTPDGVVGLGDPYEQTKAALKTIAQA 61
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L +AGA L+DVVRTR+YVTDISRW E+G+ H + FG+IRP ++VEV+ LI+P LLVEI
Sbjct 62 LTEAGAQLSDVVRTRLYVTDISRWEEIGKAHGEVFGEIRPAMAIVEVSQLISPELLVEIG 121
Query 117 ADAYVG 122
ADAY+G
Sbjct 122 ADAYIG 127
>gi|229493566|ref|ZP_04387351.1| endoribonuclease L-PSP [Rhodococcus erythropolis SK121]
gi|229319527|gb|EEN85363.1| endoribonuclease L-PSP [Rhodococcus erythropolis SK121]
Length=121
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/119 (53%), Positives = 90/119 (76%), Gaps = 0/119 (0%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGA 62
++R +SSGSE+E +GYSRAVRIG + V+GTT G+ + QTR AL I+ AL +AGA
Sbjct 2 SNRINISSGSEWEPKIGYSRAVRIGNQIAVSGTTAPGETLTDQTRAALETIKAALAEAGA 61
Query 63 TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYV 121
+L DV+RTR+Y+ D+++W + H + FG+IRP T+++EV++LI PGLL+EIEADA +
Sbjct 62 SLEDVIRTRMYLRDMTQWEQAALAHGEVFGEIRPATTILEVSSLIDPGLLIEIEADAVL 120
>gi|226306446|ref|YP_002766406.1| hypothetical protein RER_29590 [Rhodococcus erythropolis PR4]
gi|226185563|dbj|BAH33667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=126
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/118 (53%), Positives = 88/118 (75%), Gaps = 0/118 (0%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGAT 63
+R +SSGSE+E +GYSRAVRIG V V+GTT G+ + QTR AL I+ AL +AGA+
Sbjct 8 NRINISSGSEWEPKIGYSRAVRIGNQVAVSGTTAPGETLTDQTRAALETIKAALAEAGAS 67
Query 64 LADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYV 121
L DV+RTR+Y+ D+++W + H + FG+IRP T+++EV++LI P LL+EIEADA +
Sbjct 68 LDDVIRTRMYLRDMTQWEQAALAHGEVFGEIRPATTILEVSSLIDPALLIEIEADAVL 125
>gi|338532911|ref|YP_004666245.1| hypothetical protein LILAB_16320 [Myxococcus fulvus HW-1]
gi|337259007|gb|AEI65167.1| hypothetical protein LILAB_16320 [Myxococcus fulvus HW-1]
Length=131
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/129 (57%), Positives = 86/129 (67%), Gaps = 8/129 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTT---GSGD-----DIAAQTRDALRRIEI 55
RT S+G+ +E VGYSRAVR+GP V V+GTT G G+ D Q R AL+ I+
Sbjct 2 KRTQHSTGTPWEPKVGYSRAVRVGPFVSVSGTTATDGHGNIVGVGDAYIQARRALQNIQA 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL GA L DVVRTR+YVTDI RW EVG H + F IRP TSMVEV+ LI+P +LVEI
Sbjct 62 ALEALGARLEDVVRTRMYVTDIQRWEEVGRAHGEFFAHIRPATSMVEVSRLISPEILVEI 121
Query 116 EADAYVGSA 124
EADA V A
Sbjct 122 EADAVVTDA 130
>gi|325672585|ref|ZP_08152281.1| endoribonuclease L-PSP family protein [Rhodococcus equi ATCC
33707]
gi|325556462|gb|EGD26128.1| endoribonuclease L-PSP family protein [Rhodococcus equi ATCC
33707]
Length=153
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/121 (53%), Positives = 88/121 (73%), Gaps = 0/121 (0%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA 60
++ +R +SSGSE+E +GYSRAVRIG V V+GTT G + QTR AL I +L +A
Sbjct 31 LAMTRKNISSGSEWEPKIGYSRAVRIGNQVAVSGTTSPGATLEEQTRGALATIAASLTEA 90
Query 61 GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY 120
GA+L+DV+RTR+Y+ D+S+W E H + FG+IRP T+++EV+ALI LL+EIEADA
Sbjct 91 GASLSDVIRTRMYLRDMSKWEEAALAHGEVFGEIRPATTILEVSALIDSDLLIEIEADAV 150
Query 121 V 121
V
Sbjct 151 V 151
>gi|334136255|ref|ZP_08509725.1| endoribonuclease L-PSP [Paenibacillus sp. HGF7]
gi|333606228|gb|EGL17572.1| endoribonuclease L-PSP [Paenibacillus sp. HGF7]
Length=136
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/125 (58%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD-------DIAAQTRDALRRIEIA 56
R +SSGS +E VGYSRAVR+G +V VAGTT D D AQT+ AL IE A
Sbjct 3 KRKNISSGSPWEPVVGYSRAVRVGNIVEVAGTTAMKDGAVVGIGDAYAQTKFALGIIEEA 62
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L +AGA LADVVRTR++VTDI RW E+G+ H + F IRP ++MVEV ALI P LLVEIE
Sbjct 63 LNRAGAKLADVVRTRMFVTDIGRWEEIGKAHGEFFKDIRPASTMVEVRALIDPELLVEIE 122
Query 117 ADAYV 121
A V
Sbjct 123 VQAIV 127
>gi|322371424|ref|ZP_08045973.1| hypothetical protein ZOD2009_18045 [Haladaptatus paucihalophilus
DX253]
gi|320548956|gb|EFW90621.1| hypothetical protein ZOD2009_18045 [Haladaptatus paucihalophilus
DX253]
Length=129
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/126 (55%), Positives = 85/126 (68%), Gaps = 8/126 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDD--------IAAQTRDALRRIEI 55
+R +S G+E+E VGYSRAVR+G V V+GTT + DD QT+ L +E
Sbjct 2 NREKISRGTEWEGRVGYSRAVRVGNEVRVSGTTATDDDGTIVGEGDAYRQTKRTLENVES 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL +AGA+L DVVRTR+YVTDI W VGE HA+ FG +RP TSMVEV+ LI +LVEI
Sbjct 62 ALDEAGASLDDVVRTRMYVTDIENWEPVGEAHAEFFGDVRPATSMVEVSRLIDSEMLVEI 121
Query 116 EADAYV 121
EADA V
Sbjct 122 EADAIV 127
>gi|312139531|ref|YP_004006867.1| endoribonuclease [Rhodococcus equi 103S]
gi|311888870|emb|CBH48183.1| putative endoribonuclease [Rhodococcus equi 103S]
Length=121
Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/118 (54%), Positives = 85/118 (73%), Gaps = 0/118 (0%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGAT 63
+R +SSGSE+E +GYSRAVRIG V V+GTT G + QTR AL I +L +AGA+
Sbjct 2 TRKNISSGSEWEPKIGYSRAVRIGNQVAVSGTTSPGATLEEQTRGALATIAASLTEAGAS 61
Query 64 LADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYV 121
L+DV+RTR+Y+ D+S+W E H + FG+IRP T+++EV+ LI LL+EIEADA V
Sbjct 62 LSDVIRTRMYLRDMSKWEEAALAHGEVFGEIRPATTILEVSGLIDSDLLIEIEADAVV 119
>gi|302035444|ref|YP_003795766.1| putative endoribonuclease L-PSP, YjgF-like [Candidatus Nitrospira
defluvii]
gi|300603508|emb|CBK39838.1| putative Endoribonuclease L-PSP, YjgF-like [Candidatus Nitrospira
defluvii]
Length=127
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/126 (54%), Positives = 88/126 (70%), Gaps = 9/126 (7%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTT--------GSGDDIAAQTRDALRRIEI 55
+R VS+G +E+ +GYSRAVR+G V V+GTT G GD A QT AL+ IE
Sbjct 2 ARQNVSTGGPWEAKIGYSRAVRVGQSVQVSGTTAMTATGLVGKGDPYA-QTIQALKTIEA 60
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL Q+GA++ADVVRTRIY+ +I +W+EVG H + FG +RP T+MVEV LI P +L+EI
Sbjct 61 ALVQSGASIADVVRTRIYMANIDQWQEVGRAHGEVFGSVRPATTMVEVKRLIDPDMLIEI 120
Query 116 EADAYV 121
EADA V
Sbjct 121 EADAIV 126
>gi|317124461|ref|YP_004098573.1| endoribonuclease L-PSP [Intrasporangium calvum DSM 43043]
gi|315588549|gb|ADU47846.1| Endoribonuclease L-PSP [Intrasporangium calvum DSM 43043]
Length=130
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/127 (55%), Positives = 83/127 (66%), Gaps = 7/127 (5%)
Query 5 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTG-------SGDDIAAQTRDALRRIEIAL 57
R VS+GS +E VGYSRAVR+G + VAGTT G D QT+ L I AL
Sbjct 2 RQQVSTGSAWERHVGYSRAVRVGDTIHVAGTTAVRDGAVVGGGDAYLQTKAVLEIIVAAL 61
Query 58 GQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEA 117
+ GA+ DVVRTRI+VTDI+RW E+G H + FG RP +MV+V+ALI P LLVEIEA
Sbjct 62 AELGASPVDVVRTRIFVTDITRWEEIGRAHGEVFGASRPAATMVQVSALIDPVLLVEIEA 121
Query 118 DAYVGSA 124
DA VG A
Sbjct 122 DAVVGQA 128
>gi|296128280|ref|YP_003635530.1| Endoribonuclease L-PSP [Cellulomonas flavigena DSM 20109]
gi|296020095|gb|ADG73331.1| Endoribonuclease L-PSP [Cellulomonas flavigena DSM 20109]
Length=205
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/108 (62%), Positives = 78/108 (73%), Gaps = 8/108 (7%)
Query 23 AVRIGPLVVVAGTTGSG--------DDIAAQTRDALRRIEIALGQAGATLADVVRTRIYV 74
A+R+G V VAGTT +G DDIA QTR+A+RRIE AL Q GA L DVVRTR+YV
Sbjct 98 ALRVGAWVSVAGTTAAGPDGAPVGGDDIAEQTREAVRRIEAALEQVGAGLGDVVRTRMYV 157
Query 75 TDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVG 122
TDISRW EVG H + F +RP +SMVEV+ALI P LLV +EADA +G
Sbjct 158 TDISRWEEVGRAHGEFFADVRPASSMVEVSALIDPRLLVGVEADAVLG 205
>gi|108761507|ref|YP_634128.1| hypothetical protein MXAN_5993 [Myxococcus xanthus DK 1622]
gi|108465387|gb|ABF90572.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length=131
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/130 (52%), Positives = 81/130 (63%), Gaps = 8/130 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSG--------DDIAAQTRDALRRIEI 55
RT S+G+ +E VGYSRAVR+GP V V+GTT + D Q R L+ I+
Sbjct 2 KRTQHSTGTPWEPQVGYSRAVRVGPFVSVSGTTATDAQGHIVGVGDAYLQARQTLQNIQS 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL GA L DVVRTR+YV DI +W VG H + F IRP TSMVEV+ LI+P +LVEI
Sbjct 62 ALEALGARLEDVVRTRMYVVDIQQWEAVGRAHGEFFAHIRPATSMVEVSRLISPEILVEI 121
Query 116 EADAYVGSAV 125
EADA V V
Sbjct 122 EADAVVADGV 131
>gi|338211655|ref|YP_004655708.1| endoribonuclease L-PSP [Runella slithyformis DSM 19594]
gi|336305474|gb|AEI48576.1| Endoribonuclease L-PSP [Runella slithyformis DSM 19594]
Length=129
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 83/128 (65%), Gaps = 7/128 (5%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIA-------AQTRDALRRIEIA 56
R +SSG+ +E+ VGYSRAV+IG + ++GT +D QT L++IE
Sbjct 2 HRINISSGTPWETIVGYSRAVKIGNTIEISGTVAVENDQLIGLNDPYVQTGVILKKIENV 61
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L QAGA+L DVVRTRI+VTDIS+W VG H + FG+IRP T+MVEV LI P +VEIE
Sbjct 62 LQQAGASLRDVVRTRIFVTDISQWEAVGRAHGEFFGEIRPCTTMVEVARLIFPEYMVEIE 121
Query 117 ADAYVGSA 124
A A + A
Sbjct 122 ATAIIADA 129
>gi|284991653|ref|YP_003410207.1| endoribonuclease L-PSP [Geodermatophilus obscurus DSM 43160]
gi|284064898|gb|ADB75836.1| Endoribonuclease L-PSP [Geodermatophilus obscurus DSM 43160]
Length=130
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/117 (57%), Positives = 79/117 (68%), Gaps = 7/117 (5%)
Query 10 SGSEFESAVGYSRAVRIGPLVVVAGTTGSGD-------DIAAQTRDALRRIEIALGQAGA 62
S + +E+ VGYSR V G V+GTT + D D AQTR AL + AL +AG
Sbjct 8 SDTRWEAVVGYSRVVVHGDTAWVSGTTATVDGVVVHPGDAGAQTRQALALVGEALERAGF 67
Query 63 TLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADA 119
TLADVVRTR++VTDISRW EVG H + FG IRP TSMV+V ALI P +LVE+EADA
Sbjct 68 TLADVVRTRLFVTDISRWEEVGRAHGEVFGDIRPATSMVQVAALIDPAMLVEVEADA 124
>gi|15805074|ref|NP_293759.1| hypothetical protein DR_0033 [Deinococcus radiodurans R1]
gi|6457694|gb|AAF09626.1|AE001867_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length=157
Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/124 (55%), Positives = 81/124 (66%), Gaps = 7/124 (5%)
Query 3 ASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD-------DIAAQTRDALRRIEI 55
A R ++ S +E VGYSRAVR+G +V VAGTT + D D QT+ AL I
Sbjct 28 AMRQNIAGTSPWEDTVGYSRAVRVGNIVQVAGTTATVDGEVVGVGDAYWQTKVALGLIRQ 87
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL QAGA L DVVRTR+YV DISRW +VG H + FG IRP +MV+V ALI P LVEI
Sbjct 88 ALEQAGARLEDVVRTRMYVPDISRWEQVGRAHGEVFGAIRPAATMVQVAALIDPRHLVEI 147
Query 116 EADA 119
EA+A
Sbjct 148 EAEA 151
>gi|336253794|ref|YP_004596901.1| endoribonuclease L-PSP [Halopiger xanaduensis SH-6]
gi|335337783|gb|AEH37022.1| Endoribonuclease L-PSP [Halopiger xanaduensis SH-6]
Length=131
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/125 (54%), Positives = 83/125 (67%), Gaps = 8/125 (6%)
Query 5 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDD--------IAAQTRDALRRIEIA 56
R VSSG+E+ES VGYSRAVR+G V V+GTT +G+D AQT+ AL + A
Sbjct 3 RYPVSSGTEWESTVGYSRAVRVGSQVHVSGTTATGEDGDVVAPGDPYAQTKYALEVVADA 62
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L +AG++L DVVRTR+YVTDI W +G+ H + FG +RP SMVEV LI P VEIE
Sbjct 63 LEEAGSSLEDVVRTRLYVTDIDGWEAIGKAHGEVFGDVRPAASMVEVQRLIDPDHRVEIE 122
Query 117 ADAYV 121
A A V
Sbjct 123 AVAIV 127
>gi|108805177|ref|YP_645114.1| endoribonuclease L-PSP [Rubrobacter xylanophilus DSM 9941]
gi|108766420|gb|ABG05302.1| Endoribonuclease L-PSP [Rubrobacter xylanophilus DSM 9941]
Length=132
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/124 (56%), Positives = 85/124 (69%), Gaps = 10/124 (8%)
Query 5 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGT---------TGSGDDIAAQTRDALRRIEI 55
R V SG+ +E VGYSRAVR GP V V+GT G+GD A Q AL I +
Sbjct 3 RENVVSGTLWEERVGYSRAVRRGPFVFVSGTTATDGTGGIVGAGDPYA-QAVQALGNIRV 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL AGA L+DVVRTRIY+TDIS W +VG HA+ FG++RP T+MVEV+ LI+P +LVEI
Sbjct 62 ALEAAGARLSDVVRTRIYLTDISSWEQVGRAHAEFFGRVRPATTMVEVSRLISPEILVEI 121
Query 116 EADA 119
EA+A
Sbjct 122 EAEA 125
>gi|226314106|ref|YP_002774002.1| hypothetical protein BBR47_45210 [Brevibacillus brevis NBRC 100599]
gi|226097056|dbj|BAH45498.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length=126
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/125 (51%), Positives = 81/125 (65%), Gaps = 7/125 (5%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD-------DIAAQTRDALRRIEIA 56
+R V +GS +E VGY RA+R+G + VAGTT D D QTR L IE A
Sbjct 2 NRKKVFTGSPWEPVVGYCRAIRVGDRIEVAGTTAMKDGEVVGLDDAYVQTRFILETIEKA 61
Query 57 LGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIE 116
L + A L+ VVRTR++VTDIS+W E+G+ H + F +I+PV +MVEV ALI P LLVEIE
Sbjct 62 LRELDADLSHVVRTRMFVTDISKWEEIGKAHGEFFREIQPVATMVEVKALIDPRLLVEIE 121
Query 117 ADAYV 121
+A V
Sbjct 122 VEAVV 126
>gi|302536877|ref|ZP_07289219.1| pyrimidine utilization protein C [Streptomyces sp. C]
gi|302445772|gb|EFL17588.1| pyrimidine utilization protein C [Streptomyces sp. C]
Length=130
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/129 (51%), Positives = 79/129 (62%), Gaps = 8/129 (6%)
Query 1 MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDD--------IAAQTRDALRR 52
M+ R VSSGS E +G+SRAVR GP V VAGT GDD + AQT L
Sbjct 1 MTDIRRTVSSGSPLEPRIGFSRAVRTGPYVAVAGTAPIGDDGSTVGPGDVHAQTVRCLDI 60
Query 53 IEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLL 112
+ AL +AGA+LADVVRTRI +TDI+ W E H + F +RPVT+ VEV+ I P L
Sbjct 61 AQRALEEAGASLADVVRTRIMLTDITAWEEAARAHGERFAAVRPVTTFVEVSRFIDPAWL 120
Query 113 VEIEADAYV 121
VE+E DA V
Sbjct 121 VEVEVDAVV 129
>gi|269127104|ref|YP_003300474.1| endoribonuclease L-PSP [Thermomonospora curvata DSM 43183]
gi|268312062|gb|ACY98436.1| Endoribonuclease L-PSP [Thermomonospora curvata DSM 43183]
Length=132
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/122 (53%), Positives = 76/122 (63%), Gaps = 9/122 (7%)
Query 8 VSSGSEFESAVGYSRAVRIGPLVVVAGTTG---------SGDDIAAQTRDALRRIEIALG 58
V SG+ +E VGYSRAV G V V+G D AQTR L + AL
Sbjct 5 VGSGAPWEGIVGYSRAVAAGDHVHVSGCAPVDPADGRVVHEGDAYAQTRQCLANVLRALE 64
Query 59 QAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEAD 118
+ G + ADVVRTRIYVTDI+RWRE G H + FG++RP T+MVEV LI P +LVEIEAD
Sbjct 65 RFGCSAADVVRTRIYVTDIARWREYGRAHGEVFGEVRPATTMVEVAGLIDPAMLVEIEAD 124
Query 119 AY 120
AY
Sbjct 125 AY 126
>gi|325108601|ref|YP_004269669.1| endoribonuclease L-PSP [Planctomyces brasiliensis DSM 5305]
gi|324968869|gb|ADY59647.1| Endoribonuclease L-PSP [Planctomyces brasiliensis DSM 5305]
Length=129
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/126 (48%), Positives = 85/126 (68%), Gaps = 8/126 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDD--------IAAQTRDALRRIEI 55
++ ++SSGS +E +GYSRAVRIG +V V+GTT + ++ A Q L++IE
Sbjct 2 AKQLISSGSAWEGKIGYSRAVRIGNIVHVSGTTATNENGEVVGVGEPAEQAAYILQKIEG 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL AGA++ DVVRTR+YVT I W + H ++FG+IRP T++VEV+ LI P LVEI
Sbjct 62 ALKDAGASMNDVVRTRMYVTRIDDWEAIALAHGKSFGEIRPATTIVEVSRLINPDHLVEI 121
Query 116 EADAYV 121
EA+A +
Sbjct 122 EAEAVI 127
>gi|291296155|ref|YP_003507553.1| Endoribonuclease L-PSP [Meiothermus ruber DSM 1279]
gi|290471114|gb|ADD28533.1| Endoribonuclease L-PSP [Meiothermus ruber DSM 1279]
Length=118
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/113 (54%), Positives = 76/113 (68%), Gaps = 5/113 (4%)
Query 14 FESAVGYSRAVRIGPLVVVAGTTGSG----DDIAAQTRDALRRIEIALGQAGATLADVVR 69
+E VGYSRAVR+G + VAGTT + DD QT LR IE AL +AGA+L VVR
Sbjct 5 YELVVGYSRAVRVGSYIHVAGTTATDASGQDDPYIQTVQILRNIEAALKRAGASLEHVVR 64
Query 70 TRIYVTDISR-WREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYV 121
TRIYV +I R W+E+G H + F IRP ++M+E + L+ P +LVEIEADA V
Sbjct 65 TRIYVVNIERNWKEIGRAHGEFFVHIRPASTMLEASRLVEPEMLVEIEADAIV 117
>gi|257386353|ref|YP_003176126.1| endoribonuclease L-PSP [Halomicrobium mukohataei DSM 12286]
gi|257168660|gb|ACV46419.1| Endoribonuclease L-PSP [Halomicrobium mukohataei DSM 12286]
Length=128
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/122 (50%), Positives = 78/122 (64%), Gaps = 8/122 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--------DIAAQTRDALRRIEI 55
R V SG+E+E+ VGYSRAVR+G + V+GTT + + D AQ A+ IE
Sbjct 2 ERETVDSGTEWEAEVGYSRAVRVGDRIEVSGTTATDEAGGVVGVGDPYAQAAKAIENIET 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL AGA L DVVRTR++VT+I + VG H +AFG +RP TSM E+ L+ P LLVE+
Sbjct 62 ALETAGAGLEDVVRTRMFVTEIENYEAVGRAHREAFGDVRPATSMYEIERLVDPDLLVEV 121
Query 116 EA 117
EA
Sbjct 122 EA 123
>gi|212634157|ref|YP_002310682.1| endoribonuclease L-PSP [Shewanella piezotolerans WP3]
gi|212555641|gb|ACJ28095.1| Endoribonuclease L-PSP [Shewanella piezotolerans WP3]
Length=129
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/128 (47%), Positives = 79/128 (62%), Gaps = 8/128 (6%)
Query 4 SRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGD--------DIAAQTRDALRRIEI 55
SR +V S S + S +G+SRAV++G + V GT D D A QTR ++ IE
Sbjct 2 SRILVPSTSPYASKLGFSRAVKVGNFISVGGTAPIDDNGKTVGINDPALQTRQCIKTIEN 61
Query 56 ALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEI 115
AL +AGATL DVVRTR+ +T+I W+EV EV + F I PV +++EV+ I P L+EI
Sbjct 62 ALKEAGATLNDVVRTRMLLTNIDHWKEVAEVRGEYFKDILPVDTVMEVSKFINPEWLIEI 121
Query 116 EADAYVGS 123
E DA V S
Sbjct 122 EVDAVVQS 129
>gi|329850643|ref|ZP_08265488.1| endoribonuclease L-PSP family protein [Asticcacaulis biprosthecum
C19]
gi|328840958|gb|EGF90529.1| endoribonuclease L-PSP family protein [Asticcacaulis biprosthecum
C19]
Length=128
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/124 (48%), Positives = 78/124 (63%), Gaps = 7/124 (5%)
Query 5 RTMVSSGSEFESAVGYSRAVRIGPLVVVAGT-------TGSGDDIAAQTRDALRRIEIAL 57
R +VSSGS FE +G+SRAVR G + V+GT T DD+ QTR L I A+
Sbjct 3 RQLVSSGSPFEGEIGFSRAVRTGNRIEVSGTAPIRDGKTAGIDDLYEQTRTCLDIIVKAV 62
Query 58 GQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEA 117
QAG +D++RTRI++TDISRW+E + H + FG IRP +S + +ALI LVEIEA
Sbjct 63 EQAGGKPSDIIRTRIFLTDISRWKEAAKAHGEIFGDIRPASSFIGSSALINSEWLVEIEA 122
Query 118 DAYV 121
A +
Sbjct 123 SAQI 126
Lambda K H
0.315 0.131 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129798780480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40