BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2706c

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609843|ref|NP_217222.1|  hypothetical protein Rv2706c [Mycob...   169    2e-40
gi|159483237|ref|XP_001699667.1|  hypothetical protein CHLREDRAFT...  33.9    8.2  


>gi|15609843|ref|NP_217222.1| hypothetical protein Rv2706c [Mycobacterium tuberculosis H37Rv]
 gi|31793878|ref|NP_856371.1| hypothetical protein Mb2725c [Mycobacterium bovis AF2122/97]
 gi|121638581|ref|YP_978805.1| hypothetical protein BCG_2719c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 24 more sequence titles
 Length=85

 Score =  169 bits (427),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   VLVGVMLAEKKLGSGGQLGAHPSCSATAVAAVCSSQLRTGQSCVHGSPFSGIFTFSDVRG  60
           +LVGVMLAEKKLGSGGQLGAHPSCSATAVAAVCSSQLRTGQSCVHGSPFSGIFTFSDVRG
Sbjct  1   MLVGVMLAEKKLGSGGQLGAHPSCSATAVAAVCSSQLRTGQSCVHGSPFSGIFTFSDVRG  60

Query  61  SRRVPRPLSGVSFLTTFAPANRAGW  85
           SRRVPRPLSGVSFLTTFAPANRAGW
Sbjct  61  SRRVPRPLSGVSFLTTFAPANRAGW  85


>gi|159483237|ref|XP_001699667.1| hypothetical protein CHLREDRAFT_166605 [Chlamydomonas reinhardtii]
 gi|158281609|gb|EDP07363.1| predicted protein [Chlamydomonas reinhardtii]
Length=191

 Score = 33.9 bits (76),  Expect = 8.2, Method: Compositional matrix adjust.
 Identities = 19/49 (39%), Positives = 25/49 (52%), Gaps = 0/49 (0%)

Query  33   CSSQLRTGQSCVHGSPFSGIFTFSDVRGSRRVPRPLSGVSFLTTFAPAN  81
            C++  R+G SC+         TF DV     +P  LSG+S LT  A AN
Sbjct  108  CNNFTRSGLSCITTLTRLTHLTFEDVFYKEGIPHELSGLSALTRLAEAN  156



Lambda     K      H
   0.321    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40