BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2709
Length=148
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609846|ref|NP_217225.1| transmembrane protein [Mycobacteriu... 296 1e-78
gi|31793881|ref|NP_856374.1| transmembrane protein [Mycobacteriu... 295 2e-78
gi|254365366|ref|ZP_04981411.1| conserved transmembrane protein ... 293 6e-78
gi|289758837|ref|ZP_06518215.1| transmembrane protein [Mycobacte... 284 3e-75
gi|326904325|gb|EGE51258.1| conserved membrane protein [Mycobact... 284 3e-75
gi|308232218|ref|ZP_07415325.2| conserved membrane protein [Myco... 283 8e-75
gi|294994200|ref|ZP_06799891.1| hypothetical protein Mtub2_06718... 281 3e-74
gi|308372373|ref|ZP_07428434.2| conserved membrane protein [Myco... 273 8e-72
gi|339295566|gb|AEJ47677.1| transmembrane protein [Mycobacterium... 271 2e-71
gi|240169689|ref|ZP_04748348.1| hypothetical protein MkanA1_1027... 206 1e-51
gi|296171823|ref|ZP_06852937.1| transmembrane protein [Mycobacte... 192 1e-47
gi|118618672|ref|YP_907004.1| hypothetical protein MUL_3349 [Myc... 191 4e-47
gi|183982018|ref|YP_001850309.1| hypothetical protein MMAR_2004 ... 190 6e-47
gi|342858423|ref|ZP_08715078.1| hypothetical protein MCOL_06096 ... 185 2e-45
gi|41408923|ref|NP_961759.1| hypothetical protein MAP2825 [Mycob... 181 4e-44
gi|108799145|ref|YP_639342.1| hypothetical protein Mmcs_2178 [My... 180 5e-44
gi|126434753|ref|YP_001070444.1| hypothetical protein Mjls_2167 ... 179 9e-44
gi|118464240|ref|YP_882779.1| hypothetical protein MAV_3602 [Myc... 177 6e-43
gi|254821656|ref|ZP_05226657.1| hypothetical protein MintA_17102... 174 3e-42
gi|333991091|ref|YP_004523705.1| transmembrane protein [Mycobact... 174 4e-42
gi|145224528|ref|YP_001135206.1| hypothetical protein Mflv_3947 ... 171 3e-41
gi|120403442|ref|YP_953271.1| hypothetical protein Mvan_2452 [My... 171 4e-41
gi|118468312|ref|YP_887084.1| hypothetical protein MSMEG_2753 [M... 168 2e-40
gi|15827488|ref|NP_301751.1| hypothetical protein ML1015 [Mycoba... 157 4e-37
gi|699180|gb|AAA62945.1| u1764b [Mycobacterium leprae] 157 4e-37
gi|254776042|ref|ZP_05217558.1| hypothetical protein MaviaA2_154... 154 4e-36
gi|169630110|ref|YP_001703759.1| hypothetical protein MAB_3027 [... 152 2e-35
gi|229491300|ref|ZP_04385126.1| u1764b [Rhodococcus erythropolis... 127 7e-28
gi|226306293|ref|YP_002766253.1| hypothetical protein RER_28060 ... 126 1e-27
gi|54025742|ref|YP_119984.1| hypothetical protein nfa37720 [Noca... 123 7e-27
gi|333919427|ref|YP_004493008.1| hypothetical protein AS9A_1759 ... 121 4e-26
gi|111023773|ref|YP_706745.1| hypothetical protein RHA1_ro06815 ... 117 7e-25
gi|226366209|ref|YP_002783992.1| hypothetical protein ROP_68000 ... 117 7e-25
gi|312139426|ref|YP_004006762.1| integral membrane protein [Rhod... 117 7e-25
gi|296393378|ref|YP_003658262.1| hypothetical protein Srot_0958 ... 107 5e-22
gi|262202172|ref|YP_003273380.1| hypothetical protein Gbro_2239 ... 104 4e-21
gi|317506479|ref|ZP_07964280.1| prickle protein 3 [Segniliparus ... 100 9e-20
gi|343924624|ref|ZP_08764168.1| hypothetical protein GOALK_021_0... 99.4 2e-19
gi|134098372|ref|YP_001104033.1| hypothetical protein SACE_1792 ... 94.0 6e-18
gi|296139550|ref|YP_003646793.1| hypothetical protein Tpau_1836 ... 92.8 2e-17
gi|291006926|ref|ZP_06564899.1| hypothetical protein SeryN2_2059... 89.7 1e-16
gi|257056434|ref|YP_003134266.1| hypothetical protein Svir_24450... 89.7 1e-16
gi|300784478|ref|YP_003764769.1| hypothetical protein AMED_2572 ... 86.3 1e-15
gi|302525714|ref|ZP_07278056.1| conserved hypothetical protein [... 82.8 2e-14
gi|256375634|ref|YP_003099294.1| hypothetical protein Amir_1497 ... 82.4 2e-14
gi|324998208|ref|ZP_08119320.1| hypothetical protein PseP1_05546... 80.9 6e-14
gi|326384458|ref|ZP_08206138.1| hypothetical protein SCNU_16039 ... 78.2 3e-13
gi|319949009|ref|ZP_08023106.1| hypothetical membrane protein [D... 76.3 2e-12
gi|331696800|ref|YP_004333039.1| hypothetical protein Psed_2986 ... 75.9 2e-12
gi|111019038|ref|YP_702010.1| hypothetical protein RHA1_ro02045 ... 72.8 2e-11
>gi|15609846|ref|NP_217225.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15842247|ref|NP_337284.1| hypothetical protein MT2782 [Mycobacterium tuberculosis CDC1551]
gi|148662550|ref|YP_001284073.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
40 more sequence titles
Length=148
Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/148 (100%), Positives = 148/148 (100%), Gaps = 0/148 (0%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV
Sbjct 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL
Sbjct 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
Query 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
FPTAERPALEPRRQPAERSAPRGFADHG
Sbjct 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
>gi|31793881|ref|NP_856374.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121638584|ref|YP_978808.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224991076|ref|YP_002645765.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|31619475|emb|CAD94913.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121494232|emb|CAL72710.1| Probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774191|dbj|BAH26997.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341602622|emb|CCC65298.1| probable conserved transmembrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=148
Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/148 (99%), Positives = 148/148 (100%), Gaps = 0/148 (0%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLI+AAAPSYEVEHRTRVRKYLTLMAFRV
Sbjct 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLISAAAPSYEVEHRTRVRKYLTLMAFRV 60
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL
Sbjct 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
Query 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
FPTAERPALEPRRQPAERSAPRGFADHG
Sbjct 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
>gi|254365366|ref|ZP_04981411.1| conserved transmembrane protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134150879|gb|EBA42924.1| conserved transmembrane protein [Mycobacterium tuberculosis str.
Haarlem]
Length=148
Score = 293 bits (750), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 147/148 (99%), Positives = 147/148 (99%), Gaps = 0/148 (0%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV
Sbjct 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYGAWHNGLISLLIVAA VPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL
Sbjct 61 PALILAAIAYGAWHNGLISLLIVAAPVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
Query 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
FPTAERPALEPRRQPAERSAPRGFADHG
Sbjct 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
>gi|289758837|ref|ZP_06518215.1| transmembrane protein [Mycobacterium tuberculosis T85]
gi|289714401|gb|EFD78413.1| transmembrane protein [Mycobacterium tuberculosis T85]
Length=148
Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/148 (98%), Positives = 145/148 (98%), Gaps = 3/148 (2%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDSRVMKHGLRLGFNGQFDDFDD KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV
Sbjct 4 MWDSRVMKHGLRLGFNGQFDDFDD---KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL
Sbjct 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
Query 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
FPTAERPALEPRRQPAERSAPRGFADHG
Sbjct 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
>gi|326904325|gb|EGE51258.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
Length=145
Score = 284 bits (726), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/148 (98%), Positives = 145/148 (98%), Gaps = 3/148 (2%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDSRVMKHGLRLGFNGQFDDFDD KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV
Sbjct 1 MWDSRVMKHGLRLGFNGQFDDFDD---KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 57
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL
Sbjct 58 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 117
Query 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
FPTAERPALEPRRQPAERSAPRGFADHG
Sbjct 118 FPTAERPALEPRRQPAERSAPRGFADHG 145
>gi|308232218|ref|ZP_07415325.2| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308369833|ref|ZP_07419228.2| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308371105|ref|ZP_07423838.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
18 more sequence titles
Length=142
Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%), Gaps = 0/142 (0%)
Query 7 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 66
MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA
Sbjct 1 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 60
Query 67 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 126
AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER
Sbjct 61 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 120
Query 127 PALEPRRQPAERSAPRGFADHG 148
PALEPRRQPAERSAPRGFADHG
Sbjct 121 PALEPRRQPAERSAPRGFADHG 142
>gi|294994200|ref|ZP_06799891.1| hypothetical protein Mtub2_06718 [Mycobacterium tuberculosis
210]
Length=145
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 144/148 (98%), Positives = 144/148 (98%), Gaps = 3/148 (2%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDSRVMKHGLRLGFNGQFDDFDD KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV
Sbjct 1 MWDSRVMKHGLRLGFNGQFDDFDD---KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 57
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL
Sbjct 58 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 117
Query 121 FPTAERPALEPRRQPAERSAPRGFADHG 148
FPTAE PALEPRRQPAERSAPRGFADHG
Sbjct 118 FPTAEPPALEPRRQPAERSAPRGFADHG 145
>gi|308372373|ref|ZP_07428434.2| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308379288|ref|ZP_07485764.2| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308333463|gb|EFP22314.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308357502|gb|EFP46353.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
Length=138
Score = 273 bits (697), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 137/138 (99%), Positives = 138/138 (100%), Gaps = 0/138 (0%)
Query 11 LRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAY 70
+RLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAY
Sbjct 1 MRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAY 60
Query 71 GAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALE 130
GAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALE
Sbjct 61 GAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALE 120
Query 131 PRRQPAERSAPRGFADHG 148
PRRQPAERSAPRGFADHG
Sbjct 121 PRRQPAERSAPRGFADHG 138
>gi|339295566|gb|AEJ47677.1| transmembrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339299184|gb|AEJ51294.1| transmembrane protein [Mycobacterium tuberculosis CCDC5180]
Length=139
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/142 (98%), Positives = 139/142 (98%), Gaps = 3/142 (2%)
Query 7 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 66
MKHGLRLGFNGQFDDFDD KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA
Sbjct 1 MKHGLRLGFNGQFDDFDD---KGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 57
Query 67 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 126
AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER
Sbjct 58 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 117
Query 127 PALEPRRQPAERSAPRGFADHG 148
PALEPRRQPAERSAPRGFADHG
Sbjct 118 PALEPRRQPAERSAPRGFADHG 139
>gi|240169689|ref|ZP_04748348.1| hypothetical protein MkanA1_10277 [Mycobacterium kansasii ATCC
12478]
Length=138
Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/133 (79%), Positives = 114/133 (86%), Gaps = 7/133 (5%)
Query 7 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 66
MK G L F DDFD++GRPVLITAAAPSYE +HR RVRKYLTLMAFR+PALILA
Sbjct 1 MKRGFELSF-------DDFDERGRPVLITAAAPSYEEQHRARVRKYLTLMAFRIPALILA 53
Query 67 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 126
A+AYGAWHNGL+SLLIVA S+PLPWMAVLIANDRPPR ADEPRRFD ARRR PLFPTA+R
Sbjct 54 AVAYGAWHNGLVSLLIVAVSIPLPWMAVLIANDRPPRSADEPRRFDDARRRTPLFPTAKR 113
Query 127 PALEPRRQPAERS 139
PALEPRR PA +S
Sbjct 114 PALEPRRDPAPQS 126
>gi|296171823|ref|ZP_06852937.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295893959|gb|EFG73727.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=133
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/110 (87%), Positives = 102/110 (93%), Gaps = 0/110 (0%)
Query 25 FDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVA 84
FDD GRPVLITAAAPSYE +HR RVRKYLTLMAFR+PALILAA+AYGAWHNGLISL IVA
Sbjct 9 FDDDGRPVLITAAAPSYEEQHRARVRKYLTLMAFRIPALILAALAYGAWHNGLISLAIVA 68
Query 85 ASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQ 134
S+PLPWMAVLIANDRPPR ADEPRRFD A+RR PLFPTA+RPALEPRR+
Sbjct 69 VSIPLPWMAVLIANDRPPRSADEPRRFDDAKRRTPLFPTAQRPALEPRRR 118
>gi|118618672|ref|YP_907004.1| hypothetical protein MUL_3349 [Mycobacterium ulcerans Agy99]
gi|118570782|gb|ABL05533.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=142
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/149 (71%), Positives = 113/149 (76%), Gaps = 8/149 (5%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MW+S M L F DDFDDK RPVLIT AAPSYEV+HR RVRKYLTLMAFR+
Sbjct 1 MWESGGMTRDSELSF-------DDFDDKHRPVLITGAAPSYEVQHRARVRKYLTLMAFRI 53
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAAIAYG WHNGLISLL VAASVPLPWMAVLIANDRPPR +DEPRRFD ARR PL
Sbjct 54 PALILAAIAYGLWHNGLISLLTVAASVPLPWMAVLIANDRPPRSSDEPRRFDDARRHTPL 113
Query 121 FPTAERPALEPRRQ-PAERSAPRGFADHG 148
FPTAER AL+ + PA R + F + G
Sbjct 114 FPTAERLALDAGLEDPAPRWDAQRFDERG 142
>gi|183982018|ref|YP_001850309.1| hypothetical protein MMAR_2004 [Mycobacterium marinum M]
gi|183175344|gb|ACC40454.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=136
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/128 (79%), Positives = 108/128 (85%), Gaps = 1/128 (0%)
Query 22 FDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLL 81
FDDFDDK RPVLIT AAPSYEV+HR RVRKYLTLMAFR+PALILAAIAYG WHNGLISLL
Sbjct 9 FDDFDDKHRPVLITGAAPSYEVQHRARVRKYLTLMAFRIPALILAAIAYGLWHNGLISLL 68
Query 82 IVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQ-PAERSA 140
IVAASVPLPWMAVLIANDRPPR +DEPRRFD ARR PLFPTAER AL+ + PA R
Sbjct 69 IVAASVPLPWMAVLIANDRPPRSSDEPRRFDDARRHTPLFPTAERLALDAGLEDPAPRWD 128
Query 141 PRGFADHG 148
+ F + G
Sbjct 129 AQRFDERG 136
>gi|342858423|ref|ZP_08715078.1| hypothetical protein MCOL_06096 [Mycobacterium colombiense CECT
3035]
gi|342134127|gb|EGT87307.1| hypothetical protein MCOL_06096 [Mycobacterium colombiense CECT
3035]
Length=138
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/144 (72%), Positives = 110/144 (77%), Gaps = 8/144 (5%)
Query 7 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 66
MKHG GF DDFD +KGRPVLITAAA SYE +HR RVRKYLTLMAFR+PALILA
Sbjct 1 MKHGSDPGF----DDFDG--NKGRPVLITAAATSYEEQHRARVRKYLTLMAFRIPALILA 54
Query 67 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 126
A+AYGAWHNGLISL IVA S+PLPWMAVLIANDRPPR ADEPRRFD A +R PLFP AER
Sbjct 55 AVAYGAWHNGLISLAIVALSIPLPWMAVLIANDRPPRSADEPRRFDNAGQRTPLFPRAER 114
Query 127 PALEP--RRQPAERSAPRGFADHG 148
ALE Q P+G DHG
Sbjct 115 RALEAPQHPQQQWHQGPQGGIDHG 138
>gi|41408923|ref|NP_961759.1| hypothetical protein MAP2825 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397282|gb|AAS05142.1| hypothetical protein MAP_2825 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=153
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/144 (71%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MWDS MKHG D +K RPVLITAAAPSYE +HR RVRKYLTLMAFR+
Sbjct 1 MWDSGGMKHGSDS--GFDGGFDDFDRNKSRPVLITAAAPSYEEQHRARVRKYLTLMAFRI 58
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAA+AYGAWHNGLISL IVAAS+PLPWMAVLIANDRPPR DEPRRFD ARRR PL
Sbjct 59 PALILAAVAYGAWHNGLISLAIVAASIPLPWMAVLIANDRPPRSPDEPRRFDNARRRTPL 118
Query 121 FPTAERPALEPRRQPAERSAPRGF 144
FP AE+ ALEP R P G+
Sbjct 119 FPRAEQAALEPPPAAQARWQPGGW 142
>gi|108799145|ref|YP_639342.1| hypothetical protein Mmcs_2178 [Mycobacterium sp. MCS]
gi|119868260|ref|YP_938212.1| hypothetical protein Mkms_2224 [Mycobacterium sp. KMS]
gi|108769564|gb|ABG08286.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119694349|gb|ABL91422.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=138
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/136 (71%), Positives = 106/136 (78%), Gaps = 12/136 (8%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MW+S MKHG L F DD+GRPVLIT AAP+YE +HR RVRKYLTLM+FR+
Sbjct 1 MWNSGGMKHGSELSF----------DDEGRPVLITRAAPAYEEQHRARVRKYLTLMSFRI 50
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAA+AY W NGLISL IV S+PLPWMAVLIANDRPPRRA+EPRRFD RRIPL
Sbjct 51 PALILAAVAYSIWENGLISLGIVVLSIPLPWMAVLIANDRPPRRAEEPRRFD--NRRIPL 108
Query 121 FPTAERPALEPRRQPA 136
FPTAERPALE +PA
Sbjct 109 FPTAERPALEYPTRPA 124
>gi|126434753|ref|YP_001070444.1| hypothetical protein Mjls_2167 [Mycobacterium sp. JLS]
gi|126234553|gb|ABN97953.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=138
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/136 (71%), Positives = 106/136 (78%), Gaps = 12/136 (8%)
Query 1 MWDSRVMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRV 60
MW+S MKHG L F DD+GRPVLIT AAP+YE +HR RVRKYLTLM+FR+
Sbjct 1 MWNSGGMKHGSELSF----------DDEGRPVLITRAAPAYEEQHRARVRKYLTLMSFRI 50
Query 61 PALILAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPL 120
PALILAA+AY W NGLISL IV S+PLPWMAVLIANDRPPRRA+EPRRFD RRIPL
Sbjct 51 PALILAAVAYSIWENGLISLGIVVLSIPLPWMAVLIANDRPPRRAEEPRRFD--NRRIPL 108
Query 121 FPTAERPALEPRRQPA 136
FPTAERPALE +PA
Sbjct 109 FPTAERPALEYPARPA 124
>gi|118464240|ref|YP_882779.1| hypothetical protein MAV_3602 [Mycobacterium avium 104]
gi|118165527|gb|ABK66424.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336458795|gb|EGO37752.1| Protein of unknown function (DUF3099) [Mycobacterium avium subsp.
paratuberculosis S397]
Length=147
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/118 (78%), Positives = 99/118 (84%), Gaps = 0/118 (0%)
Query 27 DKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAAS 86
+K RPVLITAAAPSYE +HR RVRKYLTLMAFR+PALILAA+AYGAWHNGLISL IVAAS
Sbjct 19 NKSRPVLITAAAPSYEEQHRARVRKYLTLMAFRIPALILAAVAYGAWHNGLISLAIVAAS 78
Query 87 VPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQPAERSAPRGF 144
+PLPWMAVLIANDRPPR DEPRRFD ARRR PLFP AE+ ALEP R P G+
Sbjct 79 IPLPWMAVLIANDRPPRSPDEPRRFDNARRRTPLFPRAEQAALEPPPAAQARWQPGGW 136
>gi|254821656|ref|ZP_05226657.1| hypothetical protein MintA_17102 [Mycobacterium intracellulare
ATCC 13950]
Length=142
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/144 (76%), Positives = 114/144 (80%), Gaps = 4/144 (2%)
Query 7 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 66
MKHG GF+G FDDF KGRPVLITAA PSYE +HR RVRKYLTLMAFR+PALILA
Sbjct 1 MKHGSDAGFDGSFDDFAG--HKGRPVLITAAEPSYEEQHRARVRKYLTLMAFRIPALILA 58
Query 67 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 126
A+AYGAWHNGLISL IVA S+PLPWMAVLIANDRPPRR DEPRRFD ARRR PLFP AER
Sbjct 59 ALAYGAWHNGLISLAIVAVSIPLPWMAVLIANDRPPRRPDEPRRFDNARRRTPLFPRAER 118
Query 127 PALEPRR--QPAERSAPRGFADHG 148
PALE R QP PRG D G
Sbjct 119 PALEAPRHPQPGWPPDPRGGIDDG 142
>gi|333991091|ref|YP_004523705.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333487059|gb|AEF36451.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=153
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/137 (70%), Positives = 103/137 (76%), Gaps = 11/137 (8%)
Query 6 VMKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALIL 65
+MKHG LGF DD GRPVLITAAAPS+E +HR RVRKYLTLMAFRVPALIL
Sbjct 1 MMKHGPELGF----------DDDGRPVLITAAAPSFEQQHRERVRKYLTLMAFRVPALIL 50
Query 66 AAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAE 125
AA+AYG WHNG ISL I+ AS+PLPW+AVLIANDRPPR ADEPRR+D A R PLFPTA
Sbjct 51 AAVAYGIWHNGWISLAILIASIPLPWIAVLIANDRPPRSADEPRRYDAAPTRTPLFPTAP 110
Query 126 RPALEPRRQPAERSAPR 142
R L P R P SA R
Sbjct 111 RRELGP-RSPQPESAGR 126
>gi|145224528|ref|YP_001135206.1| hypothetical protein Mflv_3947 [Mycobacterium gilvum PYR-GCK]
gi|315444859|ref|YP_004077738.1| hypothetical protein Mspyr1_32920 [Mycobacterium sp. Spyr1]
gi|145217014|gb|ABP46418.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315263162|gb|ADT99903.1| hypothetical protein Mspyr1_32920 [Mycobacterium sp. Spyr1]
Length=132
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/129 (70%), Positives = 101/129 (79%), Gaps = 9/129 (6%)
Query 20 DDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLIS 79
D FDD+GRPVLIT AAP+YE +HR RVRKYLTLM+FRVPALILAA+AYG W NGLIS
Sbjct 3 DSELSFDDEGRPVLITRAAPAYEEQHRQRVRKYLTLMSFRVPALILAAVAYGIWENGLIS 62
Query 80 LLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQPAERS 139
L I+ S+PLPWMAVLIANDRPPR A+EPRR+D+ RRIPLFPTAERPA+E S
Sbjct 63 LAIIVVSIPLPWMAVLIANDRPPRNAEEPRRYDMP-RRIPLFPTAERPAIE--------S 113
Query 140 APRGFADHG 148
A R HG
Sbjct 114 ATRRAPQHG 122
>gi|120403442|ref|YP_953271.1| hypothetical protein Mvan_2452 [Mycobacterium vanbaalenii PYR-1]
gi|119956260|gb|ABM13265.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=145
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/129 (69%), Positives = 101/129 (79%), Gaps = 9/129 (6%)
Query 20 DDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLIS 79
D FDD+GRPVLIT AAP+YE +HR RVRKYLTLM+FR+PALILAA+AYG WHNGLIS
Sbjct 16 DSELSFDDEGRPVLITRAAPAYEEQHRQRVRKYLTLMSFRIPALILAAVAYGIWHNGLIS 75
Query 80 LLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQPAERS 139
L I+ S+PLPWMAVLIANDRPPR+A+EPRR+DV RRIPLFPTAE PA+ S
Sbjct 76 LAILVVSLPLPWMAVLIANDRPPRKAEEPRRYDVP-RRIPLFPTAEHPAIN--------S 126
Query 140 APRGFADHG 148
AP HG
Sbjct 127 APDRTPQHG 135
>gi|118468312|ref|YP_887084.1| hypothetical protein MSMEG_2753 [Mycobacterium smegmatis str.
MC2 155]
gi|118169599|gb|ABK70495.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=142
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/123 (70%), Positives = 97/123 (79%), Gaps = 6/123 (4%)
Query 7 MKHGLRLGFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILA 66
MK L F+ DDFD + RPVLIT AAP+YEV+HR RVRKYLTLMAFR+PALILA
Sbjct 1 MKQSHELSFD------DDFDAEARPVLITRAAPAYEVQHRQRVRKYLTLMAFRIPALILA 54
Query 67 AIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAER 126
A+AY W NGLISL I+A S+PLPWMAVLIANDRPPR+ +EPRR+ +IPLFPTAER
Sbjct 55 AVAYNIWENGLISLAIIAVSIPLPWMAVLIANDRPPRKREEPRRYAGRGEKIPLFPTAER 114
Query 127 PAL 129
PAL
Sbjct 115 PAL 117
>gi|15827488|ref|NP_301751.1| hypothetical protein ML1015 [Mycobacterium leprae TN]
gi|221229965|ref|YP_002503381.1| hypothetical protein MLBr_01015 [Mycobacterium leprae Br4923]
gi|13093038|emb|CAC31396.1| possible conserved membrane protein [Mycobacterium leprae]
gi|219933072|emb|CAR71110.1| possible conserved membrane protein [Mycobacterium leprae Br4923]
Length=139
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/113 (76%), Positives = 93/113 (83%), Gaps = 0/113 (0%)
Query 23 DDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLI 82
D FDD RPVLIT AAPSYE E RTRVRKY+TLMAFR+PAL+L +AY AWHNGLISLLI
Sbjct 14 DTFDDNSRPVLITTAAPSYEEERRTRVRKYMTLMAFRIPALMLTTVAYSAWHNGLISLLI 73
Query 83 VAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQP 135
VAASVPLPWMAVLIANDRP RR +EPRRFD RRR PL T E+PA + R+P
Sbjct 74 VAASVPLPWMAVLIANDRPLRRTEEPRRFDSRRRRTPLLLTTEQPAFKSLRRP 126
>gi|699180|gb|AAA62945.1| u1764b [Mycobacterium leprae]
Length=162
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/131 (68%), Positives = 98/131 (75%), Gaps = 6/131 (4%)
Query 11 LRLGFNGQFDD------FDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALI 64
L LG G+ D FDD RPVLIT AAPSYE E RTRVRKY+TLMAFR+PAL+
Sbjct 19 LVLGTVGKLSTAPNRGTTDTFDDNSRPVLITTAAPSYEEERRTRVRKYMTLMAFRIPALM 78
Query 65 LAAIAYGAWHNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTA 124
L +AY AWHNGLISLLIVAASVPLPWMAVLIANDRP RR +EPRRFD RRR PL T
Sbjct 79 LTTVAYSAWHNGLISLLIVAASVPLPWMAVLIANDRPLRRTEEPRRFDSRRRRTPLLLTT 138
Query 125 ERPALEPRRQP 135
E+PA + R+P
Sbjct 139 EQPAFKSLRRP 149
>gi|254776042|ref|ZP_05217558.1| hypothetical protein MaviaA2_15420 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=106
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/88 (87%), Positives = 81/88 (93%), Gaps = 0/88 (0%)
Query 27 DKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAAS 86
+K RPVLITAAAPSYE +HR RVRKYLTLMAFR+PALILAA+AYGAWHNGLISL IVAAS
Sbjct 19 NKSRPVLITAAAPSYEEQHRARVRKYLTLMAFRIPALILAAVAYGAWHNGLISLAIVAAS 78
Query 87 VPLPWMAVLIANDRPPRRADEPRRFDVA 114
+PLPWMAVLIANDRPPR DEPRRFD A
Sbjct 79 IPLPWMAVLIANDRPPRSPDEPRRFDNA 106
>gi|169630110|ref|YP_001703759.1| hypothetical protein MAB_3027 [Mycobacterium abscessus ATCC 19977]
gi|169242077|emb|CAM63105.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=130
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/123 (64%), Positives = 92/123 (75%), Gaps = 0/123 (0%)
Query 24 DFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIV 83
FDD GRPVLITAAA S E +HR RVR+YLT+MAFR+PALI AA AY WHNG +SL I+
Sbjct 6 SFDDDGRPVLITAAAVSVEEQHRARVRRYLTIMAFRIPALIGAAWAYSVWHNGWVSLAIL 65
Query 84 AASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQPAERSAPRG 143
AAS+PLPWMAVLIANDRPPR+A+EPRR+ + LFPTAER A++ P P+
Sbjct 66 AASIPLPWMAVLIANDRPPRKAEEPRRYGPQTQHHALFPTAERRAIDTASAPQPHHPPQD 125
Query 144 FAD 146
AD
Sbjct 126 SAD 128
>gi|229491300|ref|ZP_04385126.1| u1764b [Rhodococcus erythropolis SK121]
gi|229321839|gb|EEN87634.1| u1764b [Rhodococcus erythropolis SK121]
Length=119
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/115 (54%), Positives = 77/115 (67%), Gaps = 0/115 (0%)
Query 16 NGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHN 75
NG F D+ PVLIT A S E +H+ RVRKY+ +M+FR PALILAAIAYG W N
Sbjct 4 NGAFGRSDEAGTPDNPVLITEAQQSVEEQHKARVRKYMIIMSFRFPALILAAIAYGIWAN 63
Query 76 GLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALE 130
IS+LI+ AS+PLPW+AVLIANDRPPR DEP R+D ++ +A +E
Sbjct 64 AWISMLIIGASIPLPWIAVLIANDRPPRTKDEPSRYDGRKKTAGEIESATHHTIE 118
>gi|226306293|ref|YP_002766253.1| hypothetical protein RER_28060 [Rhodococcus erythropolis PR4]
gi|226185410|dbj|BAH33514.1| hypothetical protein RER_28060 [Rhodococcus erythropolis PR4]
Length=119
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/97 (62%), Positives = 71/97 (74%), Gaps = 0/97 (0%)
Query 16 NGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHN 75
NG F D+ PVLIT A S E +H+ RVRKY+ +M+FR PALILAAIAYG W N
Sbjct 4 NGAFGRSDEAGTPDNPVLITEAQKSVEEQHKARVRKYMIIMSFRFPALILAAIAYGIWAN 63
Query 76 GLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFD 112
IS+LI+ AS+PLPW+AVLIANDRPPR DEP R+D
Sbjct 64 AWISMLIIGASIPLPWIAVLIANDRPPRTKDEPSRYD 100
>gi|54025742|ref|YP_119984.1| hypothetical protein nfa37720 [Nocardia farcinica IFM 10152]
gi|54017250|dbj|BAD58620.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=137
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/85 (72%), Positives = 69/85 (82%), Gaps = 0/85 (0%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLP 90
PVLIT AAPS E +HR RVR+Y LMAFR+PAL+LAAIAY W N LISLLI+ AS+PLP
Sbjct 40 PVLITEAAPSLEDQHRARVRRYTILMAFRIPALVLAAIAYSVWGNALISLLIIGASIPLP 99
Query 91 WMAVLIANDRPPRRADEPRRFDVAR 115
W+AVLIANDRPPR DEP R+D R
Sbjct 100 WIAVLIANDRPPRTKDEPSRWDRPR 124
>gi|333919427|ref|YP_004493008.1| hypothetical protein AS9A_1759 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481648|gb|AEF40208.1| hypothetical protein AS9A_1759 [Amycolicicoccus subflavus DQS3-9A1]
Length=133
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/104 (57%), Positives = 71/104 (69%), Gaps = 0/104 (0%)
Query 15 FNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWH 74
F G F +P+LIT A S+E +HR RVRKY LM+FR+PALILAAIAY
Sbjct 13 FTGDESTAKAFGKPSKPLLITGATESFEQQHRARVRKYTILMSFRIPALILAAIAYSVTG 72
Query 75 NGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFDVARRRI 118
G + LLI+A S+PLPW+AVL+ANDRPPRR EP R+D RR I
Sbjct 73 TGWVPLLIIALSIPLPWVAVLVANDRPPRRKGEPDRYDARRRAI 116
>gi|111023773|ref|YP_706745.1| hypothetical protein RHA1_ro06815 [Rhodococcus jostii RHA1]
gi|110823303|gb|ABG98587.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=119
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/99 (60%), Positives = 68/99 (69%), Gaps = 4/99 (4%)
Query 14 GFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAW 73
GF G D PVLIT AA S E +HR RVRKYL +M+FR PALI AA+AYG W
Sbjct 6 GFGGSHDA----GSPSNPVLITEAARSIEDQHRARVRKYLLIMSFRFPALIFAAVAYGIW 61
Query 74 HNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFD 112
N IS+ I+ S+PLPW+AVLIANDRPPR DEP R+D
Sbjct 62 ENPWISMAIIGVSIPLPWIAVLIANDRPPRSKDEPSRYD 100
>gi|226366209|ref|YP_002783992.1| hypothetical protein ROP_68000 [Rhodococcus opacus B4]
gi|226244699|dbj|BAH55047.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=119
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/99 (60%), Positives = 68/99 (69%), Gaps = 4/99 (4%)
Query 14 GFNGQFDDFDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAW 73
GF G D PVLIT AA S E +HR RVRKYL +M+FR PALI AA+AYG W
Sbjct 6 GFGGSHDA----GSPSNPVLITEAARSIEDQHRARVRKYLLIMSFRFPALIFAAVAYGIW 61
Query 74 HNGLISLLIVAASVPLPWMAVLIANDRPPRRADEPRRFD 112
N IS+ I+ S+PLPW+AVLIANDRPPR DEP R+D
Sbjct 62 ENPWISMAIIGVSIPLPWIAVLIANDRPPRTKDEPSRYD 100
>gi|312139426|ref|YP_004006762.1| integral membrane protein [Rhodococcus equi 103S]
gi|325672685|ref|ZP_08152381.1| hypothetical protein HMPREF0724_10162 [Rhodococcus equi ATCC
33707]
gi|311888765|emb|CBH48077.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325556562|gb|EGD26228.1| hypothetical protein HMPREF0724_10162 [Rhodococcus equi ATCC
33707]
Length=118
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/94 (62%), Positives = 71/94 (76%), Gaps = 3/94 (3%)
Query 22 FDDFDDKG---RPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLI 78
F D + G P LIT A S E +HR RV+KYLT+M+FR+PALILAA+AYGA+ N I
Sbjct 7 FGDSAESGTPRHPALITEAQQSIEDQHRARVKKYLTIMSFRIPALILAALAYGAFGNAWI 66
Query 79 SLLIVAASVPLPWMAVLIANDRPPRRADEPRRFD 112
S+ I+A S+PLPW+AVLIANDRPPR DEP R+D
Sbjct 67 SVGIIALSIPLPWIAVLIANDRPPRSKDEPSRYD 100
>gi|296393378|ref|YP_003658262.1| hypothetical protein Srot_0958 [Segniliparus rotundus DSM 44985]
gi|296180525|gb|ADG97431.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=111
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/87 (55%), Positives = 66/87 (76%), Gaps = 0/87 (0%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLP 90
P LIT A PS + R RVRKY +M+FR+P L+LA++ Y +HNG++++LI+AASVPLP
Sbjct 7 PSLITEAEPSLHDQQRARVRKYTIMMSFRIPLLLLASLVYAEFHNGVVAMLILAASVPLP 66
Query 91 WMAVLIANDRPPRRADEPRRFDVARRR 117
WMAVLIANDRPP+ ++ + +R+R
Sbjct 67 WMAVLIANDRPPKNKEQSAMLEASRKR 93
>gi|262202172|ref|YP_003273380.1| hypothetical protein Gbro_2239 [Gordonia bronchialis DSM 43247]
gi|262085519|gb|ACY21487.1| hypothetical protein Gbro_2239 [Gordonia bronchialis DSM 43247]
Length=147
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/72 (69%), Positives = 59/72 (82%), Gaps = 0/72 (0%)
Query 33 LITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLPWM 92
LIT A SYE +HR RVRKYLTLMAFRVPAL++A I Y + NGL++L IV S+PLPW+
Sbjct 25 LITDAQESYEAQHRARVRKYLTLMAFRVPALVIAGIVYSSTGNGLLALGIVVLSIPLPWV 84
Query 93 AVLIANDRPPRR 104
AVL+ANDRPPR+
Sbjct 85 AVLVANDRPPRK 96
>gi|317506479|ref|ZP_07964280.1| prickle protein 3 [Segniliparus rugosus ATCC BAA-974]
gi|316255240|gb|EFV14509.1| prickle protein 3 [Segniliparus rugosus ATCC BAA-974]
Length=126
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/77 (58%), Positives = 59/77 (77%), Gaps = 0/77 (0%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLP 90
P LIT A PS + + R RVRKY +M+FR+P ILA++ Y HNG++++ I+AAS+PLP
Sbjct 7 PSLITEAEPSLQDQQRARVRKYTIMMSFRIPLFILASLVYAELHNGILAMAILAASIPLP 66
Query 91 WMAVLIANDRPPRRADE 107
WMAVLIANDRPP+R +
Sbjct 67 WMAVLIANDRPPKRKQK 83
>gi|343924624|ref|ZP_08764168.1| hypothetical protein GOALK_021_00020 [Gordonia alkanivorans NBRC
16433]
gi|343765424|dbj|GAA11094.1| hypothetical protein GOALK_021_00020 [Gordonia alkanivorans NBRC
16433]
Length=155
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/111 (51%), Positives = 68/111 (62%), Gaps = 4/111 (3%)
Query 33 LITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLPWM 92
LIT A S E + + RVRKYL +MAFRVPALI+A IAY +GL++L IVA S+PLPWM
Sbjct 42 LITDAQDSLEAQQKARVRKYLIMMAFRVPALIVAGIAYSITGSGLLALAIVAISIPLPWM 101
Query 93 AVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQPAERSAPRG 143
AVLIANDRPPR+ E + + P PAL Q +R G
Sbjct 102 AVLIANDRPPRKRGEVPHYKYGADHHVVGP----PALSHTDQQLDRGTVEG 148
>gi|134098372|ref|YP_001104033.1| hypothetical protein SACE_1792 [Saccharopolyspora erythraea NRRL
2338]
gi|133910995|emb|CAM01108.1| hypothetical protein SACE_1792 [Saccharopolyspora erythraea NRRL
2338]
Length=109
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/88 (53%), Positives = 60/88 (69%), Gaps = 0/88 (0%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLP 90
PVLIT A PSY+ + R RKY +MA R+P L AA+ Y AW ++L+++A SVPLP
Sbjct 11 PVLITEAQPSYDDQQAVRRRKYAIMMACRIPCLAFAALIYQAWGLWWLALIVLAISVPLP 70
Query 91 WMAVLIANDRPPRRADEPRRFDVARRRI 118
WMAVLIANDRPPR+ + R+ + R I
Sbjct 71 WMAVLIANDRPPRKQEHVSRYHHSSRSI 98
>gi|296139550|ref|YP_003646793.1| hypothetical protein Tpau_1836 [Tsukamurella paurometabola DSM
20162]
gi|296027684|gb|ADG78454.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=118
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/79 (57%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 33 LITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLPWM 92
+IT A SYE +HR RVR+YL +MAFR+PAL+L+A+ Y A + I+L I+A S+P+PW+
Sbjct 17 VITDAEDSYEEQHRRRVRRYLLIMAFRIPALVLSAVVYSATGSWPIALAIIAVSIPIPWI 76
Query 93 AVLIANDRPPRRADEPRRF 111
AV+ ANDRP RR EP RF
Sbjct 77 AVIRANDRPKRRRGEPGRF 95
>gi|291006926|ref|ZP_06564899.1| hypothetical protein SeryN2_20593 [Saccharopolyspora erythraea
NRRL 2338]
Length=98
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/87 (51%), Positives = 59/87 (68%), Gaps = 0/87 (0%)
Query 32 VLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLPW 91
+LIT A PSY+ + R RKY +MA R+P L AA+ Y AW ++L+++A SVPLPW
Sbjct 1 MLITEAQPSYDDQQAVRRRKYAIMMACRIPCLAFAALIYQAWGLWWLALIVLAISVPLPW 60
Query 92 MAVLIANDRPPRRADEPRRFDVARRRI 118
MAVLIANDRPPR+ + R+ + R I
Sbjct 61 MAVLIANDRPPRKQEHVSRYHHSSRSI 87
>gi|257056434|ref|YP_003134266.1| hypothetical protein Svir_24450 [Saccharomonospora viridis DSM
43017]
gi|256586306|gb|ACU97439.1| hypothetical protein Svir_24450 [Saccharomonospora viridis DSM
43017]
Length=107
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/90 (48%), Positives = 59/90 (66%), Gaps = 3/90 (3%)
Query 22 FDDFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLL 81
+ D+ PVLIT AAPSY+ +H R RKYL +M RVP L+LA Y W ++L
Sbjct 1 MKEHDEHAAPVLITEAAPSYDDQHAARKRKYLIMMTMRVPCLVLAGFFYQTW---WLALG 57
Query 82 IVAASVPLPWMAVLIANDRPPRRADEPRRF 111
++ S+PL W+AVLIANDRPPR+A+ ++
Sbjct 58 LIVLSLPLSWIAVLIANDRPPRKAERVHKY 87
>gi|300784478|ref|YP_003764769.1| hypothetical protein AMED_2572 [Amycolatopsis mediterranei U32]
gi|299793992|gb|ADJ44367.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340525899|gb|AEK41104.1| hypothetical protein RAM_13070 [Amycolatopsis mediterranei S699]
Length=104
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (67%), Gaps = 3/86 (3%)
Query 27 DKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAAS 86
+ PVLIT AAPSYE + TR RKY+ +M R+P LI A + Y W ++L +A S
Sbjct 6 NDSDPVLITGAAPSYEQQLATRKRKYVIMMVCRIPCLIAAGLTYHVW---WLALGFLAIS 62
Query 87 VPLPWMAVLIANDRPPRRADEPRRFD 112
VPLPW+AVLIANDRPPR+++ +
Sbjct 63 VPLPWIAVLIANDRPPRKSEHVSTYQ 88
>gi|302525714|ref|ZP_07278056.1| conserved hypothetical protein [Streptomyces sp. AA4]
gi|302434609|gb|EFL06425.1| conserved hypothetical protein [Streptomyces sp. AA4]
Length=118
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/87 (46%), Positives = 58/87 (67%), Gaps = 3/87 (3%)
Query 26 DDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAA 85
D + PVLIT A PS + + R RKY+ +M R+P L+LA + Y W +++L +
Sbjct 19 DPRPEPVLITEAEPSLDDQLAARKRKYVIMMVCRIPCLVLAGLTYHTW---WLAILFLVI 75
Query 86 SVPLPWMAVLIANDRPPRRADEPRRFD 112
SVPLPW+AVLIANDRPPR++++ R+
Sbjct 76 SVPLPWIAVLIANDRPPRKSEKVSRYS 102
>gi|256375634|ref|YP_003099294.1| hypothetical protein Amir_1497 [Actinosynnema mirum DSM 43827]
gi|255919937|gb|ACU35448.1| hypothetical protein Amir_1497 [Actinosynnema mirum DSM 43827]
Length=106
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/80 (52%), Positives = 54/80 (68%), Gaps = 3/80 (3%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLP 90
PVLIT A PSYE + R RKY +M R+P L+LA + Y W ++L + S+PLP
Sbjct 7 PVLITEAEPSYEDQLAARKRKYAIMMGSRIPCLLLAMVFYDTW---WLALAFIVLSIPLP 63
Query 91 WMAVLIANDRPPRRADEPRR 110
WMAVLIANDRPPR++++ R
Sbjct 64 WMAVLIANDRPPRKSEKASR 83
>gi|324998208|ref|ZP_08119320.1| hypothetical protein PseP1_05546 [Pseudonocardia sp. P1]
Length=164
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/113 (42%), Positives = 65/113 (58%), Gaps = 8/113 (7%)
Query 32 VLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGA-WHNGLISLLIVAASVPLP 90
VLIT A SYE E R R+Y M R+P +ILA I Y W +++ ++A SVPLP
Sbjct 10 VLITDAQMSYEEELEIRKRRYKLTMGLRIPCMILAGICYQIPW----LAVTLLAISVPLP 65
Query 91 WMAVLIANDRPPRRADEPRRFDVARRRIPLFPTAERPALEPRRQPAERSAPRG 143
W+AVL+ANDR PR+A++P R+ R I P ++ Q A+ + P G
Sbjct 66 WIAVLVANDRLPRKAEKPNRYRREHRAIEARP---HQVIDSSEQEADEAGPSG 115
>gi|326384458|ref|ZP_08206138.1| hypothetical protein SCNU_16039 [Gordonia neofelifaecis NRRL
B-59395]
gi|326196803|gb|EGD53997.1| hypothetical protein SCNU_16039 [Gordonia neofelifaecis NRRL
B-59395]
Length=146
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/84 (47%), Positives = 55/84 (66%), Gaps = 0/84 (0%)
Query 24 DFDDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIV 83
+ D LIT+A P + +R R R+Y +M+ R+PALI+A+I YG NG I+L I+
Sbjct 6 EHDGNSDSFLITSAEPDQDAVYRARRRRYFIMMSIRIPALIIASIVYGVTQNGWIALAII 65
Query 84 AASVPLPWMAVLIANDRPPRRADE 107
S+P+PW+AVL ANDR PR+ E
Sbjct 66 VVSIPIPWIAVLKANDREPRKHGE 89
>gi|319949009|ref|ZP_08023106.1| hypothetical membrane protein [Dietzia cinnamea P4]
gi|319437297|gb|EFV92320.1| hypothetical membrane protein [Dietzia cinnamea P4]
Length=138
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (67%), Gaps = 0/86 (0%)
Query 26 DDKGRPVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAA 85
DD RPVLIT A SY E R ++Y LM+ R+PAL+LAA + W+N I+L IVA
Sbjct 14 DDTSRPVLITGARESYRDELAARKKRYFVLMSVRIPALLLAAGSLALWNNPWIALAIVAG 73
Query 86 SVPLPWMAVLIANDRPPRRADEPRRF 111
S+P+PW+AV+ ANDRPP + R +
Sbjct 74 SIPIPWIAVIGANDRPPLPKGQARTY 99
>gi|331696800|ref|YP_004333039.1| hypothetical protein Psed_2986 [Pseudonocardia dioxanivorans
CB1190]
gi|326951489|gb|AEA25186.1| hypothetical protein Psed_2986 [Pseudonocardia dioxanivorans
CB1190]
Length=106
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/82 (52%), Positives = 55/82 (68%), Gaps = 5/82 (6%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGA-WHNGLISLLIVAASVPL 89
PVLIT AA SYE E R R+Y T+M RVP +I AA Y W +++ ++ S+PL
Sbjct 12 PVLITDAAMSYEQELAVRKRRYKTMMLMRVPCMIAAAAFYQIPW----LAVGLLVLSIPL 67
Query 90 PWMAVLIANDRPPRRADEPRRF 111
PW+AVL+ANDR PR+A+ P RF
Sbjct 68 PWIAVLVANDRLPRKAENPNRF 89
>gi|111019038|ref|YP_702010.1| hypothetical protein RHA1_ro02045 [Rhodococcus jostii RHA1]
gi|110818568|gb|ABG93852.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=109
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/77 (45%), Positives = 50/77 (65%), Gaps = 0/77 (0%)
Query 31 PVLITAAAPSYEVEHRTRVRKYLTLMAFRVPALILAAIAYGAWHNGLISLLIVAASVPLP 90
P+ IT A+ S E +HR RVRKY+ + +FR A +L+A+ YG N +++ I+ S+PLP
Sbjct 30 PISITTASVSLEQQHRVRVRKYVIVASFRFLAFLLSAVVYGLSGNPWVAVAIIGVSLPLP 89
Query 91 WMAVLIANDRPPRRADE 107
W+ LI +D PP DE
Sbjct 90 WLVALIVDDLPPWEKDE 106
Lambda K H
0.326 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130586878330
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40