BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2710
Length=323
Score E
Sequences producing significant alignments: (Bits) Value
gi|289553505|ref|ZP_06442715.1| RNA polymerase sigma factor sigB... 649 0.0
gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB... 648 0.0
gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor Sig... 648 0.0
gi|15609847|ref|NP_217226.1| RNA polymerase sigma factor SigB [M... 647 0.0
gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuber... 647 0.0
gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [M... 622 2e-176
gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma f... 620 8e-176
gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [... 620 1e-175
gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB... 619 2e-175
gi|240169688|ref|ZP_04748347.1| RNA polymerase sigma factor SigB... 618 4e-175
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-7... 618 5e-175
gi|342858422|ref|ZP_08715077.1| RNA polymerase sigma factor SigB... 615 3e-174
gi|183982017|ref|YP_001850308.1| RNA polymerase sigma factor Sig... 612 3e-173
gi|118618673|ref|YP_907005.1| RNA polymerase sigma factor SigB [... 608 4e-172
gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [... 604 5e-171
gi|333991092|ref|YP_004523706.1| RNA polymerase sigma factor Sig... 603 2e-170
gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [... 600 8e-170
gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [... 599 2e-169
gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor Sig... 598 3e-169
gi|315444860|ref|YP_004077739.1| RNA polymerase sigma factor, si... 598 4e-169
gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegma... 590 9e-167
gi|15827487|ref|NP_301750.1| RNA polymerase sigma factor SigB [M... 587 1e-165
gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor Sig... 567 7e-160
gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [N... 564 7e-159
gi|312139424|ref|YP_004006760.1| sigma-70 factor sigb [Rhodococc... 552 3e-155
gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase ... 552 3e-155
gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB... 548 5e-154
gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [... 547 1e-153
gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor Sig... 546 2e-153
gi|226306291|ref|YP_002766251.1| RNA polymerase sigma factor Sig... 541 7e-152
gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase s... 540 1e-151
gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D... 538 4e-151
gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB... 524 8e-147
gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sig... 522 4e-146
gi|340525895|gb|AEK41100.1| RNA polymerase sigma factor SigB [Am... 519 2e-145
gi|333919424|ref|YP_004493005.1| RNA polymerase sigma factor [Am... 519 2e-145
gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus r... 517 1e-144
gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase s... 516 2e-144
gi|319948428|ref|ZP_08022566.1| RNA polymerase sigma factor SigB... 514 1e-143
gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS... 512 2e-143
gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor Sig... 506 1e-141
gi|257056437|ref|YP_003134269.1| RNA polymerase sigma factor Sig... 506 2e-141
gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor Sig... 502 2e-140
gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor Sig... 501 5e-140
gi|331696792|ref|YP_004333031.1| RpoD subfamily RNA polymerase s... 501 5e-140
gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB... 498 4e-139
gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [... 497 1e-138
gi|336325738|ref|YP_004605704.1| RNA polymerase sigma factor B [... 488 4e-136
gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [C... 487 8e-136
gi|213964561|ref|ZP_03392761.1| RNA polymerase sigma factor RpoD... 483 2e-134
>gi|289553505|ref|ZP_06442715.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
KZN 605]
gi|289438137|gb|EFD20630.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
KZN 605]
Length=338
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH
Sbjct 16 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 75
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 76 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 135
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 136 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 195
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Sbjct 196 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 255
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 256 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 315
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVMSKLRHGERADRLRSYAS
Sbjct 316 IERDVMSKLRHGERADRLRSYAS 338
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
7 more sequence titles
Length=333
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH
Sbjct 11 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 70
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 71 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Sbjct 191 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVMSKLRHGERADRLRSYAS
Sbjct 311 IERDVMSKLRHGERADRLRSYAS 333
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
KZN 1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
24 more sequence titles
Length=345
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH
Sbjct 23 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 82
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 83 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 142
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 143 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 202
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Sbjct 203 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 262
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 263 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 322
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVMSKLRHGERADRLRSYAS
Sbjct 323 IERDVMSKLRHGERADRLRSYAS 345
>gi|15609847|ref|NP_217226.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
H37Rv]
gi|15842248|ref|NP_337285.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CDC1551]
gi|31793882|ref|NP_856375.1| RNA polymerase sigma factor SigB [Mycobacterium bovis AF2122/97]
40 more sequence titles
Length=323
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/323 (100%), Positives = 323/323 (100%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH
Sbjct 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Sbjct 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVMSKLRHGERADRLRSYAS
Sbjct 301 IERDVMSKLRHGERADRLRSYAS 323
>gi|1657704|gb|AAC44535.1| sigma factor MytB [Mycobacterium tuberculosis]
Length=345
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/323 (99%), Positives = 322/323 (99%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLN AGEVELAKRIEAGLYAEH
Sbjct 23 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNPAGEVELAKRIEAGLYAEH 82
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 83 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 142
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 143 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 202
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Sbjct 203 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 262
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 263 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 322
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVMSKLRHGERADRLRSYAS
Sbjct 323 IERDVMSKLRHGERADRLRSYAS 345
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length=332
Score = 622 bits (1604), Expect = 2e-176, Method: Compositional matrix adjust.
Identities = 310/320 (97%), Positives = 314/320 (99%), Gaps = 0/320 (0%)
Query 4 APTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63
A A+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE
Sbjct 13 AMANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 72
Query 64 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 123
TRKRLGENRKRDL AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL
Sbjct 73 TRKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 132
Query 124 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ
Sbjct 133 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 192
Query 184 HLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 243
+LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE
Sbjct 193 NLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 252
Query 244 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 303
NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER
Sbjct 253 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 312
Query 304 DVMSKLRHGERADRLRSYAS 323
DVMSKLR+GERADRLRSYAS
Sbjct 313 DVMSKLRNGERADRLRSYAS 332
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=329
Score = 620 bits (1600), Expect = 8e-176, Method: Compositional matrix adjust.
Identities = 308/320 (97%), Positives = 314/320 (99%), Gaps = 0/320 (0%)
Query 4 APTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63
A A+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE
Sbjct 10 AMANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 69
Query 64 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 123
TRKRLGENR+RDL AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL
Sbjct 70 TRKRLGENRRRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 129
Query 124 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ
Sbjct 130 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 189
Query 184 HLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 243
+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE
Sbjct 190 NLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 249
Query 244 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 303
NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER
Sbjct 250 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 309
Query 304 DVMSKLRHGERADRLRSYAS 323
DVMSKLRHGERADRLRSYAS
Sbjct 310 DVMSKLRHGERADRLRSYAS 329
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
Length=319
Score = 620 bits (1599), Expect = 1e-175, Method: Compositional matrix adjust.
Identities = 309/316 (98%), Positives = 313/316 (99%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
A+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR
Sbjct 4 ASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGENRKRDL AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS
Sbjct 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
ATCC 13950]
Length=319
Score = 619 bits (1596), Expect = 2e-175, Method: Compositional matrix adjust.
Identities = 308/316 (98%), Positives = 313/316 (99%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
A+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR
Sbjct 4 ASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGENRKRDL AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGENRKRDLEAVVRDGKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELAAESGIP+DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAAESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS
Sbjct 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|240169688|ref|ZP_04748347.1| RNA polymerase sigma factor SigB [Mycobacterium kansasii ATCC
12478]
Length=319
Score = 618 bits (1594), Expect = 4e-175, Method: Compositional matrix adjust.
Identities = 308/316 (98%), Positives = 312/316 (99%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
ATTSR DSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAE+LLETRKR
Sbjct 4 ATTSRADSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEYLLETRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGENRKR+LAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGENRKRELAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELA ESGIP+DKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAEESGIPVDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM
Sbjct 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303
Query 308 KLRHGERADRLRSYAS 323
KLRHGERADRLRSYAS
Sbjct 304 KLRHGERADRLRSYAS 319
>gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length=319
Score = 618 bits (1593), Expect = 5e-175, Method: Compositional matrix adjust.
Identities = 308/316 (98%), Positives = 312/316 (99%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
A+TSR D DLDAQSPAADLVRVYLNGIGK ALLNAAGEVELAKRIEAGLYAEHLLETRKR
Sbjct 4 ASTSRFDGDLDAQSPAADLVRVYLNGIGKKALLNAAGEVELAKRIEAGLYAEHLLETRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGENRKRDL AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS
Sbjct 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|342858422|ref|ZP_08715077.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
gi|342134126|gb|EGT87306.1| RNA polymerase sigma factor SigB [Mycobacterium colombiense CECT
3035]
Length=319
Score = 615 bits (1586), Expect = 3e-174, Method: Compositional matrix adjust.
Identities = 306/316 (97%), Positives = 312/316 (99%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
A+TSR D DLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLL TRKR
Sbjct 4 ASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLATRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGENRKRDL AVVRDG+AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS
Sbjct 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|183982017|ref|YP_001850308.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
gi|183175343|gb|ACC40453.1| RNA polymerase sigma factor SigB [Mycobacterium marinum M]
Length=333
Score = 612 bits (1578), Expect = 3e-173, Method: Compositional matrix adjust.
Identities = 305/323 (95%), Positives = 310/323 (96%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH
Sbjct 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Sbjct 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVM KLRHGERADRLRSYAS
Sbjct 311 IERDVMCKLRHGERADRLRSYAS 333
>gi|118618673|ref|YP_907005.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
gi|118570783|gb|ABL05534.1| RNA polymerase sigma factor SigB [Mycobacterium ulcerans Agy99]
Length=323
Score = 608 bits (1567), Expect = 4e-172, Method: Compositional matrix adjust.
Identities = 303/323 (94%), Positives = 310/323 (96%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH
Sbjct 1 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 60
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 61 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
+HQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAM
Sbjct 181 IHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAM 240
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ
Sbjct 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IERDVM KLRHGERADRLRSYAS
Sbjct 301 IERDVMCKLRHGERADRLRSYAS 323
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length=329
Score = 604 bits (1558), Expect = 5e-171, Method: Compositional matrix adjust.
Identities = 300/320 (94%), Positives = 311/320 (98%), Gaps = 0/320 (0%)
Query 4 APTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63
A ATTSR+D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+
Sbjct 10 AMANATTSRIDQDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLD 69
Query 64 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 123
TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL
Sbjct 70 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 129
Query 124 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
IRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ
Sbjct 130 IRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 189
Query 184 HLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 243
+LGREATDEELAAESGIP++KI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAE
Sbjct 190 NLGREATDEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAE 249
Query 244 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 303
NAVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER
Sbjct 250 NAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 309
Query 304 DVMSKLRHGERADRLRSYAS 323
+VM+KLR+GERADRLRSYAS
Sbjct 310 EVMAKLRNGERADRLRSYAS 329
>gi|333991092|ref|YP_004523706.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487060|gb|AEF36452.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length=321
Score = 603 bits (1554), Expect = 2e-170, Method: Compositional matrix adjust.
Identities = 299/320 (94%), Positives = 308/320 (97%), Gaps = 0/320 (0%)
Query 4 APTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63
A AT SR+D DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLLE
Sbjct 2 AKADATISRIDGDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAKHLLE 61
Query 64 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 123
TRKR GE RKR+LA VVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL
Sbjct 62 TRKRFGEKRKRELATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 121
Query 124 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
IRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ
Sbjct 122 IRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 181
Query 184 HLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 243
LGREATDEELAAESGIP +KINDLLEHSRDPVSLDMPVGS+EEAPLGDFIED+EAMSAE
Sbjct 182 QLGREATDEELAAESGIPAEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDSEAMSAE 241
Query 244 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 303
NAVI+ELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER
Sbjct 242 NAVISELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 301
Query 304 DVMSKLRHGERADRLRSYAS 323
+VM+KLRHGERADRLRSYAS
Sbjct 302 EVMAKLRHGERADRLRSYAS 321
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
sp. KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
sp. JLS]
Length=319
Score = 600 bits (1548), Expect = 8e-170, Method: Compositional matrix adjust.
Identities = 299/316 (95%), Positives = 309/316 (98%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL T+KR
Sbjct 4 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNTKKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGE+RKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELA ESGIP +KI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+
Sbjct 244 SELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str.
MC2 155]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
Length=319
Score = 599 bits (1545), Expect = 2e-169, Method: Compositional matrix adjust.
Identities = 296/316 (94%), Positives = 310/316 (99%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR
Sbjct 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI
Sbjct 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+
Sbjct 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
gilvum PYR-GCK]
Length=329
Score = 598 bits (1543), Expect = 3e-169, Method: Compositional matrix adjust.
Identities = 298/320 (94%), Positives = 308/320 (97%), Gaps = 0/320 (0%)
Query 4 APTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63
A ATTSR D DLDAQSPAADLVRVYLNGIGKTALL AA EVELAKRIEAGLYA+HLL
Sbjct 10 AMANATTSRFDQDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEAGLYAQHLLA 69
Query 64 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 123
TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL
Sbjct 70 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 129
Query 124 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
IRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ
Sbjct 130 IRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 189
Query 184 HLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 243
+LGREATDEELA ESGIP++KINDLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAE
Sbjct 190 NLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAE 249
Query 244 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 303
NAVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER
Sbjct 250 NAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 309
Query 304 DVMSKLRHGERADRLRSYAS 323
+VM+KLR+G+RADRLRSYAS
Sbjct 310 EVMAKLRNGDRADRLRSYAS 329
>gi|315444860|ref|YP_004077739.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp.
Spyr1]
Length=319
Score = 598 bits (1541), Expect = 4e-169, Method: Compositional matrix adjust.
Identities = 297/316 (94%), Positives = 307/316 (98%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
ATTSR D DLDAQSPAADLVRVYLNGIGKTALL AA EVELAKRIEAGLYA+HLL TRKR
Sbjct 4 ATTSRFDQDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEAGLYAQHLLATRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+
Sbjct 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303
Query 308 KLRHGERADRLRSYAS 323
KLR+G+RADRLRSYAS
Sbjct 304 KLRNGDRADRLRSYAS 319
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length=319
Score = 590 bits (1521), Expect = 9e-167, Method: Compositional matrix adjust.
Identities = 292/316 (93%), Positives = 307/316 (98%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
ATTSRVD+DLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYA+HLL+T+KR
Sbjct 4 ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDTKKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
LGE RKRDL AVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 LGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELA ESGIP++KINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAENAVI
Sbjct 184 EATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM+
Sbjct 244 SELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMA 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERAD+ YAS
Sbjct 304 KLRNGERADQPAVYAS 319
>gi|15827487|ref|NP_301750.1| RNA polymerase sigma factor SigB [Mycobacterium leprae TN]
gi|221229964|ref|YP_002503380.1| RNA polymerase sigma factor SigB [Mycobacterium leprae Br4923]
gi|699187|gb|AAA62952.1| u1764a [Mycobacterium leprae]
gi|13093037|emb|CAC31395.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933071|emb|CAR71109.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length=319
Score = 587 bits (1512), Expect = 1e-165, Method: Compositional matrix adjust.
Identities = 304/316 (97%), Positives = 309/316 (98%), Gaps = 0/316 (0%)
Query 8 ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKR 67
ATT+RVDSDLDAQSPAADLVRVYLNGIGKTALLNAA EVELAKRIEAGLYAEHLL+TRKR
Sbjct 4 ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQTRKR 63
Query 68 LGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 127
GE RKR LAAV RDG AARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM
Sbjct 64 FGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAM 123
Query 128 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGR 187
EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ+LGR
Sbjct 124 EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGR 183
Query 188 EATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 247
EATDEELAAESGIPI+KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI
Sbjct 184 EATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVI 243
Query 248 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMS 307
AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVM
Sbjct 244 AELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMC 303
Query 308 KLRHGERADRLRSYAS 323
KLR+GERADRLRSYAS
Sbjct 304 KLRNGERADRLRSYAS 319
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
Length=323
Score = 567 bits (1462), Expect = 7e-160, Method: Compositional matrix adjust.
Identities = 279/323 (87%), Positives = 301/323 (94%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
MA+A TR + DLDAQSPAADLVRVYLNGIGKTALL A EVELAKRIEAGLYA+H
Sbjct 1 MANATTRPARTTESEDLDAQSPAADLVRVYLNGIGKTALLTAEDEVELAKRIEAGLYAQH 60
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LL+T+KRLGE RK+DLA +VR+G AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 61 LLDTKKRLGEARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 121 LGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
+HQ LGREA+DEELA ESGIP++KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED EAM
Sbjct 181 LHQRLGREASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAM 240
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAENAVIAELLH+D+RSVLATLDERE QVIRLR+GLDDGQ RTLDQIGKLFGLSRERVRQ
Sbjct 241 SAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQ 300
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IER+VM+KLRHG+RA+RLRSYAS
Sbjct 301 IEREVMAKLRHGDRAERLRSYAS 323
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length=322
Score = 564 bits (1453), Expect = 7e-159, Method: Compositional matrix adjust.
Identities = 281/321 (88%), Positives = 300/321 (94%), Gaps = 3/321 (0%)
Query 6 TRATTSRV---DSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLL 62
T T+RV DSDLDAQSPAADLVRVYLNGIG+TALL AA EVELAKRIEAGLYA+HLL
Sbjct 2 TSPATTRVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLL 61
Query 63 ETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 122
ET KRL +K+DLA +VRDG+AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG
Sbjct 62 ETSKRLSAAKKKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 121
Query 123 LIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMH 182
LIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+H
Sbjct 122 LIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELH 181
Query 183 QHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSA 242
Q LGREATDEELAAESGIP++KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SA
Sbjct 182 QQLGREATDEELAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSA 241
Query 243 ENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIE 302
E+AVIA LLH D+RSVLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIE
Sbjct 242 ESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIE 301
Query 303 RDVMSKLRHGERADRLRSYAS 323
R+VM+KLR GERADRLR+YAS
Sbjct 302 REVMAKLRKGERADRLRAYAS 322
>gi|312139424|ref|YP_004006760.1| sigma-70 factor sigb [Rhodococcus equi 103S]
gi|325672687|ref|ZP_08152383.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi
ATCC 33707]
gi|311888763|emb|CBH48075.1| sigma-70 factor SigB [Rhodococcus equi 103S]
gi|325556564|gb|EGD26230.1| RNA polymerase principal sigma factor SigB [Rhodococcus equi
ATCC 33707]
Length=322
Score = 552 bits (1422), Expect = 3e-155, Method: Compositional matrix adjust.
Identities = 273/320 (86%), Positives = 293/320 (92%), Gaps = 0/320 (0%)
Query 4 APTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLE 63
+P +DSDLD QSPAADLVRVYLNGIG+TALL AA EV+LA+RIEAGLYA H+L
Sbjct 3 SPGTTRPRTIDSDLDGQSPAADLVRVYLNGIGRTALLTAADEVDLARRIEAGLYAAHVLA 62
Query 64 TRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 123
T+KRL +KRDLA +VRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL
Sbjct 63 TKKRLTAAKKRDLATIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGL 122
Query 124 IRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQ 183
IRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ
Sbjct 123 IRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQ 182
Query 184 HLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAE 243
LGREATDEEL+ ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAE
Sbjct 183 QLGREATDEELSQESGIPEHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAE 242
Query 244 NAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER 303
NAVIA LLH+D+RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER
Sbjct 243 NAVIAGLLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIER 302
Query 304 DVMSKLRHGERADRLRSYAS 323
+VM KLR GERADRLR+YAS
Sbjct 303 EVMGKLRQGERADRLRAYAS 322
>gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085518|gb|ACY21486.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length=337
Score = 552 bits (1422), Expect = 3e-155, Method: Compositional matrix adjust.
Identities = 271/323 (84%), Positives = 296/323 (92%), Gaps = 0/323 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
AD TR + + DLDAQSPAADLVRVYLNGIG+TALLNA EVELAK+IEAGLYA+H
Sbjct 15 FADDATRTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKH 74
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
+L T+KRL +KRDLA VVR+GEAAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 75 VLATKKRLSAAKKRDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 134
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 135 LGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 194
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
+HQ LGREATDEELA ESGIP +KI DLL+HSRDPVSLDMPVGS+EEAPLGDFIEDAEA
Sbjct 195 LHQQLGREATDEELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAT 254
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAE+AVIA L+HTD+R+VLATLDERE QVIR+R+GLDDGQPRTLDQIG++FGLSRERVRQ
Sbjct 255 SAESAVIAGLMHTDVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQ 314
Query 301 IERDVMSKLRHGERADRLRSYAS 323
IER+VM KLR G+RA+RLR+YAS
Sbjct 315 IEREVMGKLRQGDRAERLRAYAS 337
>gi|343924623|ref|ZP_08764167.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC
16433]
gi|343765423|dbj|GAA11093.1| RNA polymerase sigma factor SigB [Gordonia alkanivorans NBRC
16433]
Length=338
Score = 548 bits (1411), Expect = 5e-154, Method: Compositional matrix adjust.
Identities = 268/311 (87%), Positives = 291/311 (94%), Gaps = 0/311 (0%)
Query 13 VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72
+ DLDAQSPAADLVRVYLNGIG+TALLNA EVELAK+IEAGLYA+H+L T+KRL +
Sbjct 28 TEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHVLATKKRLSATK 87
Query 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
KRDLA +VR+GEAAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY
Sbjct 88 KRDLATIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 147
Query 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDE
Sbjct 148 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDE 207
Query 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
ELA ESGIP +KI DLL+HSRDPVSLDMPVGS+EEAPLGDFIEDAEA SAENAVIA LLH
Sbjct 208 ELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAENAVIAGLLH 267
Query 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
+DIR+VLATLDERE QVIR+R+GLDDGQPRTLDQIG++FGLSRERVRQIER+VM KLR G
Sbjct 268 SDIRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRAG 327
Query 313 ERADRLRSYAS 323
+RA+RLR+YAS
Sbjct 328 DRAERLRAYAS 338
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential) [Rhodococcus
jostii RHA1]
Length=323
Score = 547 bits (1409), Expect = 1e-153, Method: Compositional matrix adjust.
Identities = 272/319 (86%), Positives = 295/319 (93%), Gaps = 3/319 (0%)
Query 8 ATTSRV---DSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 64
+TT+R+ +DLDAQSPAADLVRVYLNGIG+TALL AA EVEL+KRIEAGLYA H+LET
Sbjct 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64
Query 65 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
KRL +KRDLA VVR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI
Sbjct 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
Query 125 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQH 184
RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ
Sbjct 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184
Query 185 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 244
LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN
Sbjct 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244
Query 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304
AVIA LLH+D+RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+
Sbjct 245 AVIAGLLHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304
Query 305 VMSKLRHGERADRLRSYAS 323
VM KLR G+RA+RLRSYAS
Sbjct 305 VMGKLRQGDRAERLRSYAS 323
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
Length=323
Score = 546 bits (1406), Expect = 2e-153, Method: Compositional matrix adjust.
Identities = 271/319 (85%), Positives = 295/319 (93%), Gaps = 3/319 (0%)
Query 8 ATTSRV---DSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 64
+TT+R+ +DLDAQSPAADLVRVYLNGIG+TALL AA EVEL+KRIEAGLYA H+LET
Sbjct 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILET 64
Query 65 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
KRL +KRDLA VVR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI
Sbjct 65 GKRLSPAKKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
Query 125 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQH 184
RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ
Sbjct 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184
Query 185 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 244
LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN
Sbjct 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244
Query 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304
AVIA LLH+D+R+VLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+
Sbjct 245 AVIAGLLHSDVRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304
Query 305 VMSKLRHGERADRLRSYAS 323
VM KLR G+RA+RLRSYAS
Sbjct 305 VMGKLRQGDRAERLRSYAS 323
>gi|226306291|ref|YP_002766251.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
Length=323
Score = 541 bits (1393), Expect = 7e-152, Method: Compositional matrix adjust.
Identities = 269/319 (85%), Positives = 293/319 (92%), Gaps = 3/319 (0%)
Query 8 ATTSRV---DSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 64
+TT+R+ +DLDAQSPAADLVRVYLNGIG+TALL AA EVELAKRIEAGLYA H+L T
Sbjct 5 STTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLAT 64
Query 65 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
KRL +KRDLA +VR+G++AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI
Sbjct 65 GKRLTVAKKRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
Query 125 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQH 184
RAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ
Sbjct 125 RAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQ 184
Query 185 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 244
LGREATD+ELA ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAEN
Sbjct 185 LGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAEN 244
Query 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304
AVIA LLH+D+RSVL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+
Sbjct 245 AVIAGLLHSDVRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIERE 304
Query 305 VMSKLRHGERADRLRSYAS 323
VM KLR G+RA++LRSYAS
Sbjct 305 VMGKLRVGDRAEKLRSYAS 323
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length=330
Score = 540 bits (1391), Expect = 1e-151, Method: Compositional matrix adjust.
Identities = 273/322 (85%), Positives = 299/322 (93%), Gaps = 0/322 (0%)
Query 2 ADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHL 61
A A R ++DLDAQSPAADLVRVYLNGIG+TALL A EVELAKRIEAGLYA+HL
Sbjct 9 APAAERVRPELTEADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHL 68
Query 62 LETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 121
L+T+KRL ++KRDLA +VRDG+AAR+HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL
Sbjct 69 LDTKKRLSASKKRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNL 128
Query 122 GLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREM 181
GLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARI+RE+
Sbjct 129 GLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRREL 188
Query 182 HQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMS 241
HQ LGREATD ELAAESGIP +KI DL++HSRDPVSLDMPVGS+EEAPLGDFIEDAEA S
Sbjct 189 HQQLGREATDAELAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAAS 248
Query 242 AENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQI 301
AE+AVI+ L+H+D+RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQI
Sbjct 249 AESAVISTLMHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQI 308
Query 302 ERDVMSKLRHGERADRLRSYAS 323
ER+VMSKLR+GERADRLR+YAS
Sbjct 309 EREVMSKLRNGERADRLRAYAS 330
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length=323
Score = 538 bits (1387), Expect = 4e-151, Method: Compositional matrix adjust.
Identities = 264/311 (85%), Positives = 287/311 (93%), Gaps = 0/311 (0%)
Query 13 VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72
D+DLDAQSPAADLVRVYLNGIG+TALL A EV+LAKRIEAGLYA+ +LE KRL +
Sbjct 13 TDADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIEAGLYAKQVLENTKRLSAVK 72
Query 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
KR+LA +VRDG AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY
Sbjct 73 KRNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
Query 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDE
Sbjct 133 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDE 192
Query 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
EL++ESGI ++KI DLL+HSRDPVSLDMPVGS+EEAPLGDFIED+EA SAENAVIA LLH
Sbjct 193 ELSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAENAVIAGLLH 252
Query 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
+D+R VL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G
Sbjct 253 SDVRVVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQG 312
Query 313 ERADRLRSYAS 323
+RA++LRSYAS
Sbjct 313 DRAEKLRSYAS 323
>gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
gi|326196808|gb|EGD54002.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
Length=332
Score = 524 bits (1349), Expect = 8e-147, Method: Compositional matrix adjust.
Identities = 256/318 (81%), Positives = 287/318 (91%), Gaps = 0/318 (0%)
Query 6 TRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETR 65
TR + + DLDAQSP+ADLVRVYLNGIG+TALLNA EV+L+K IEAGLYA+HLL T+
Sbjct 15 TRTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVDLSKAIEAGLYAKHLLATK 74
Query 66 KRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 125
KRL +KRD A +VR+GE AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR
Sbjct 75 KRLTPAKKRDYAILVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 134
Query 126 AMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHL 185
A+EKFDY KG+KFSTYATWWIRQAI+RGMADQSRTIRLPVHLVEQVNKLARI+RE+HQ L
Sbjct 135 AVEKFDYAKGYKFSTYATWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQL 194
Query 186 GREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENA 245
GREATDEELA ESGIP +KI DL++HSRDPVSLDMPVG++EEAPLGDFIEDAEA SAE
Sbjct 195 GREATDEELALESGIPAEKIADLMDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETV 254
Query 246 VIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDV 305
VIA LLH+DIRSVL+TLDERE QVI +R+GLDDGQPRTLDQIG+ FGLSRERVRQIER+V
Sbjct 255 VIANLLHSDIRSVLSTLDEREMQVITMRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREV 314
Query 306 MSKLRHGERADRLRSYAS 323
M KLR G+RA++LR+YAS
Sbjct 315 MGKLRQGDRAEKLRAYAS 332
>gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sigma factor [Amycolatopsis mediterranei
U32]
gi|299793988|gb|ADJ44363.1| RNA polymerase primary-like sigma factor [Amycolatopsis mediterranei
U32]
Length=343
Score = 522 bits (1344), Expect = 4e-146, Method: Compositional matrix adjust.
Identities = 257/319 (81%), Positives = 289/319 (91%), Gaps = 0/319 (0%)
Query 5 PTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 64
P+ + + D+DLDAQSPAADLVRVYLNGIGKTALL+AA EVELAKRIEAG++A+H+L+T
Sbjct 25 PSMSLGALTDADLDAQSPAADLVRVYLNGIGKTALLSAADEVELAKRIEAGVFAQHMLDT 84
Query 65 RKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 124
+ L R+ +LAA+VRDG A+ HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI
Sbjct 85 GENLTTKRRTELAALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 144
Query 125 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQH 184
RA+EKFDY+KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ
Sbjct 145 RAVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQ 204
Query 185 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 244
LGR+AT EELAAESGIP KI+DLL+HSRDPVSLDMPVG+EE+APLGDFIED+EA AE+
Sbjct 205 LGRDATHEELAAESGIPAHKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAES 264
Query 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304
AVI+ LL D+R VLATLD+RE VIRLR+GLDDGQPRTLDQIGK FGLSRERVRQIER+
Sbjct 265 AVISGLLQDDLRRVLATLDDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIERE 324
Query 305 VMSKLRHGERADRLRSYAS 323
VMSKLR GERADRLR+YAS
Sbjct 325 VMSKLRQGERADRLRAYAS 343
>gi|340525895|gb|AEK41100.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei
S699]
Length=317
Score = 519 bits (1337), Expect = 2e-145, Method: Compositional matrix adjust.
Identities = 256/311 (83%), Positives = 285/311 (92%), Gaps = 0/311 (0%)
Query 13 VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72
D+DLDAQSPAADLVRVYLNGIGKTALL+AA EVELAKRIEAG++A+H+L+T + L R
Sbjct 7 TDADLDAQSPAADLVRVYLNGIGKTALLSAADEVELAKRIEAGVFAQHMLDTGENLTTKR 66
Query 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
+ +LAA+VRDG A+ HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY
Sbjct 67 RTELAALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 126
Query 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
+KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGR+AT E
Sbjct 127 SKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHE 186
Query 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
ELAAESGIP KI+DLL+HSRDPVSLDMPVG+EE+APLGDFIED+EA AE+AVI+ LL
Sbjct 187 ELAAESGIPAHKISDLLDHSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQ 246
Query 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
D+R VLATLD+RE VIRLR+GLDDGQPRTLDQIGK FGLSRERVRQIER+VMSKLR G
Sbjct 247 DDLRRVLATLDDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMSKLRQG 306
Query 313 ERADRLRSYAS 323
ERADRLR+YAS
Sbjct 307 ERADRLRAYAS 317
>gi|333919424|ref|YP_004493005.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481645|gb|AEF40205.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length=327
Score = 519 bits (1337), Expect = 2e-145, Method: Compositional matrix adjust.
Identities = 252/309 (82%), Positives = 282/309 (92%), Gaps = 0/309 (0%)
Query 15 SDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRKR 74
++LD+QSPAADLVRVYLNGIG+TALL AA EVELAKRIEAGLYA H+L+T +L +KR
Sbjct 19 AELDSQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYATHILQTAPKLTPAKKR 78
Query 75 DLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 134
DLA +VRDG+ AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY K
Sbjct 79 DLAYIVRDGQKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 138
Query 135 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEEL 194
GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREAT+ EL
Sbjct 139 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATEAEL 198
Query 195 AAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 254
A ESGIP +KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED++A AE AVI LLH+D
Sbjct 199 ARESGIPQEKIQDLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSDATDAETAVITRLLHSD 258
Query 255 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGER 314
IR+VL+TLDERE QVI R+GL+DGQPRTLDQIG++FGLSRERVRQIER+VM+KLR G+R
Sbjct 259 IRTVLSTLDERERQVITFRYGLEDGQPRTLDQIGRIFGLSRERVRQIEREVMTKLRQGDR 318
Query 315 ADRLRSYAS 323
A++LR YAS
Sbjct 319 AEKLRGYAS 327
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length=348
Score = 517 bits (1331), Expect = 1e-144, Method: Compositional matrix adjust.
Identities = 257/325 (80%), Positives = 286/325 (88%), Gaps = 2/325 (0%)
Query 1 MADAPTR--ATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYA 58
+A+AP R + R+ DLD QSPAADLVRVYLNGIG+TALL A EV LAK IEAGLYA
Sbjct 24 IAEAPGRLHVASERLQEDLDTQSPAADLVRVYLNGIGRTALLTAEDEVTLAKSIEAGLYA 83
Query 59 EHLLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQE 118
EHL+ T + L R+R+L AVVRDG AAR HLLEANLRLVVSLAKRYTGRG+PLLDLIQE
Sbjct 84 EHLINTSEGLTPQRRRELKAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQE 143
Query 119 GNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIK 178
GNLGLIRAMEKFDY+KGFKFSTYATWWIRQAITRG+ADQSRTIRLPVHLVEQVNKL+RIK
Sbjct 144 GNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVNKLSRIK 203
Query 179 REMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAE 238
RE+HQ LGREAT EEL+ E+GIP +I DLL+HSRDPVSLDMPVG++EEAPLGDFIED+E
Sbjct 204 RELHQQLGREATSEELSRETGIPEHRIADLLDHSRDPVSLDMPVGADEEAPLGDFIEDSE 263
Query 239 AMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERV 298
SAENAVIA LH D+RSVLATL + E QVIRLR+GLDDGQPRTLDQIGK+F LSRERV
Sbjct 264 GASAENAVIAGFLHRDVRSVLATLSDSEQQVIRLRYGLDDGQPRTLDQIGKIFSLSRERV 323
Query 299 RQIERDVMSKLRHGERADRLRSYAS 323
RQIER+VM KLR+G+RA+RLRSYAS
Sbjct 324 RQIEREVMVKLRNGDRAERLRSYAS 348
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus rotundus
DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length=377
Score = 516 bits (1328), Expect = 2e-144, Method: Compositional matrix adjust.
Identities = 253/310 (82%), Positives = 279/310 (90%), Gaps = 0/310 (0%)
Query 14 DSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRK 73
+ DLD QSPAADLVRVYLNGIG+TALL AA EVELAK IEAGLYAEHLL+T L R+
Sbjct 68 EGDLDTQSPAADLVRVYLNGIGRTALLTAADEVELAKSIEAGLYAEHLLKTSDNLTPQRR 127
Query 74 RDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 133
R+L V RDG+AAR HLLEANLRLVVSLAKRYTGRG+PLLDLIQEGNLGLIRAMEKFDY
Sbjct 128 RELKTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDYA 187
Query 134 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEE 193
KGFKFSTYATWWIRQAITRG+ADQSRTIRLPVHLVEQVNKL+RIKRE+HQ LGREAT EE
Sbjct 188 KGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVNKLSRIKRELHQQLGREATSEE 247
Query 194 LAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 253
L+ E+GIP +I DLL+HSRDPVSLDMPVG++EEAPLGDFIED+E SAENAVIA LH
Sbjct 248 LSRETGIPEHRIADLLDHSRDPVSLDMPVGADEEAPLGDFIEDSEGASAENAVIAGFLHR 307
Query 254 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGE 313
D+R+VLATL+E E QVIRLR+GLDDGQPRTLDQIGK+F LSRERVRQIER+VM KLR+G+
Sbjct 308 DVRTVLATLNEVEQQVIRLRYGLDDGQPRTLDQIGKVFSLSRERVRQIEREVMVKLRNGD 367
Query 314 RADRLRSYAS 323
RA+RLRSYAS
Sbjct 368 RAERLRSYAS 377
>gi|319948428|ref|ZP_08022566.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
gi|319437910|gb|EFV92892.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
Length=322
Score = 514 bits (1323), Expect = 1e-143, Method: Compositional matrix adjust.
Identities = 262/322 (82%), Positives = 289/322 (90%), Gaps = 1/322 (0%)
Query 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60
M A TR + R ++D + QSP+ADLVRVYLNGIGKTALLNA EVEL+KRIEAGLYA+H
Sbjct 1 MTSAITR-SDRRTEADPEGQSPSADLVRVYLNGIGKTALLNAEDEVELSKRIEAGLYAKH 59
Query 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
LLET+KRLG +K DL +V +GEAAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN
Sbjct 60 LLETKKRLGPAKKADLKTIVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 119
Query 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180
LGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE
Sbjct 120 LGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 179
Query 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240
+HQ LGREAT EELA ESGIP KI +LL+HSRDPVSLDMPVG++EEAPLGDFIEDAEA
Sbjct 180 LHQQLGREATLEELAEESGIPAHKIEELLDHSRDPVSLDMPVGADEEAPLGDFIEDAEAT 239
Query 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300
SAEN V++ ++H+D+R+VLATL+ERE QVI LRFGLDDGQPRTLDQIGK FGLSRERVRQ
Sbjct 240 SAENTVVSNVMHSDVRAVLATLEEREQQVITLRFGLDDGQPRTLDQIGKRFGLSRERVRQ 299
Query 301 IERDVMSKLRHGERADRLRSYA 322
IER+VM+KLR G RAD+LRSYA
Sbjct 300 IEREVMAKLREGRRADKLRSYA 321
>gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434605|gb|EFL06421.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length=317
Score = 512 bits (1319), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 251/311 (81%), Positives = 284/311 (92%), Gaps = 0/311 (0%)
Query 13 VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72
D+DLDAQSPAADLVRVYLNGIGKTALL AA EVELAKRIEAG++A+H+L+T + L R
Sbjct 7 TDADLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEAGVFAQHMLDTAEDLTPQR 66
Query 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
+++L A+VRDG A+ HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY
Sbjct 67 RKELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 126
Query 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
+KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARI+R++HQ LGR+AT E
Sbjct 127 SKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIRRDLHQQLGRDATHE 186
Query 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
EL+AESGIP+ KI+DLL+ SRDPVSLDMPVG+EE+APLGDFIED+EA AE+AVI+ LL
Sbjct 187 ELSAESGIPVHKISDLLDQSRDPVSLDMPVGTEEDAPLGDFIEDSEATDAESAVISGLLQ 246
Query 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
D+R VLATLD+RE VIRLR+GLDDGQPRTLDQIGK FGLSRERVRQIER+VM+KLR G
Sbjct 247 DDLRRVLATLDDREQHVIRLRYGLDDGQPRTLDQIGKHFGLSRERVRQIEREVMAKLRQG 306
Query 313 ERADRLRSYAS 323
ERADRLR+YAS
Sbjct 307 ERADRLRAYAS 317
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea
NRRL 2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea
NRRL 2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length=324
Score = 506 bits (1304), Expect = 1e-141, Method: Compositional matrix adjust.
Identities = 244/311 (79%), Positives = 280/311 (91%), Gaps = 0/311 (0%)
Query 13 VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72
+++DLD Q P+ADLVRVYLNGIG+TALL A EV+LAKRIEAG++A H+LET +L R
Sbjct 14 IEADLDTQGPSADLVRVYLNGIGRTALLTAQEEVDLAKRIEAGVFANHVLETSGKLSPER 73
Query 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
+ DL AVVRDG A+ HL+EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY
Sbjct 74 RSDLKAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 133
Query 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK+ARIKR++HQ LGREATDE
Sbjct 134 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDE 193
Query 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
ELA E+G+ ++K+ DLL+HSRDPVSLDMPVG+EE+APLGDFIEDAE+ AENAVI+ L
Sbjct 194 ELANEAGLTVEKVADLLDHSRDPVSLDMPVGAEEDAPLGDFIEDAESADAENAVISGFLQ 253
Query 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
D+R VL+TL+ERE VIR+R+GLDDGQPRTLDQIGK FGLSRERVRQIER+VMSKLR G
Sbjct 254 DDLRRVLSTLEEREQAVIRMRYGLDDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLRQG 313
Query 313 ERADRLRSYAS 323
+RAD+LR+YAS
Sbjct 314 DRADKLRAYAS 324
>gi|257056437|ref|YP_003134269.1| RNA polymerase sigma factor SigB [Saccharomonospora viridis DSM
43017]
gi|256586309|gb|ACU97442.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length=342
Score = 506 bits (1303), Expect = 2e-141, Method: Compositional matrix adjust.
Identities = 249/310 (81%), Positives = 281/310 (91%), Gaps = 0/310 (0%)
Query 14 DSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRK 73
++DLDAQ PAADLVRVYLNGIGKTALL A EV+LAKRIEAG++A+H+L+T L E RK
Sbjct 33 EADLDAQGPAADLVRVYLNGIGKTALLTAEEEVDLAKRIEAGVFAQHVLDTSDDLSEERK 92
Query 74 RDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 133
+L+ VVRDGE A+ HLL+ANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDYT
Sbjct 93 AELSEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 152
Query 134 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEE 193
KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT EE
Sbjct 153 KGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATHEE 212
Query 194 LAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 253
LAAESGI K+ DLL+H+RDPVSLDMPVG++E+APLGDFIED+EA +AEN+VI+ LL
Sbjct 213 LAAESGIAEKKVADLLDHARDPVSLDMPVGADEDAPLGDFIEDSEAANAENSVISTLLQD 272
Query 254 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGE 313
D+R VLATLD+RE VIRLR+GLDDGQPRTLDQIGK F LSRERVRQIER+VM+KLRHGE
Sbjct 273 DLRRVLATLDDREEHVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMAKLRHGE 332
Query 314 RADRLRSYAS 323
RAD+LR+YAS
Sbjct 333 RADKLRAYAS 342
>gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor SigB [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758568|gb|ACR17818.1| RNA polymerase sigma factor B [Corynebacterium kroppenstedtii
DSM 44385]
Length=326
Score = 502 bits (1293), Expect = 2e-140, Method: Compositional matrix adjust.
Identities = 250/320 (79%), Positives = 285/320 (90%), Gaps = 5/320 (1%)
Query 8 ATTSRVDSDL-----DAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLL 62
+TT+ V+ D + ++P+ADLVRVYLNGIG+TALLNA EVEL++RIEAGLYA+HLL
Sbjct 7 STTTEVNGDPGRRANNNENPSADLVRVYLNGIGRTALLNAEDEVELSQRIEAGLYAQHLL 66
Query 63 ETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 122
E+ ++ ++KRDL AV +DG AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG
Sbjct 67 ESDEQFTPSKKRDLKAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLG 126
Query 123 LIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMH 182
LIRA+EKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+
Sbjct 127 LIRAVEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMY 186
Query 183 QHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSA 242
QHLGREAT+EELA ESGI KI+ LL+ SRDPVSLDMPVG++EEAPLGDFIED+EA A
Sbjct 187 QHLGREATNEELAEESGIDESKIDLLLKQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDA 246
Query 243 ENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIE 302
E AV+A L H+DIR+VLATL++RE VIRLRFGLDDG PRTLDQIG+ FGLSRERVRQIE
Sbjct 247 EEAVVASLRHSDIRTVLATLEKREQDVIRLRFGLDDGVPRTLDQIGREFGLSRERVRQIE 306
Query 303 RDVMSKLRHGERADRLRSYA 322
R+VM+KLR GERAD+LRSYA
Sbjct 307 REVMAKLRKGERADKLRSYA 326
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length=330
Score = 501 bits (1291), Expect = 5e-140, Method: Compositional matrix adjust.
Identities = 249/311 (81%), Positives = 278/311 (90%), Gaps = 0/311 (0%)
Query 13 VDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENR 72
VD DLDAQ PAADLVRVYLNGIGKTALL AA EVELAKRIEAG++A H+LET L R
Sbjct 20 VDLDLDAQGPAADLVRVYLNGIGKTALLTAAQEVELAKRIEAGVFAHHVLETTTALNAGR 79
Query 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
+L A+VRDG A+ HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY
Sbjct 80 ADELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 139
Query 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
TKGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT+E
Sbjct 140 TKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNE 199
Query 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 252
ELAAESG+ K++DLL+H+RDPVSLDMPVG+EE+APLGDFIED++A AE+AVI+ LL
Sbjct 200 ELAAESGLSPTKVSDLLDHARDPVSLDMPVGAEEDAPLGDFIEDSDATDAESAVISGLLQ 259
Query 253 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHG 312
D+R VLATL++RE VIRLR+GL+DGQPRTLDQIGK FGLSRERVRQIER+VMSKLR G
Sbjct 260 DDLRRVLATLEQREQAVIRLRYGLEDGQPRTLDQIGKQFGLSRERVRQIEREVMSKLRQG 319
Query 313 ERADRLRSYAS 323
ERA +LR+YAS
Sbjct 320 ERAAKLRAYAS 330
>gi|331696792|ref|YP_004333031.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951481|gb|AEA25178.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length=348
Score = 501 bits (1291), Expect = 5e-140, Method: Compositional matrix adjust.
Identities = 256/326 (79%), Positives = 280/326 (86%), Gaps = 8/326 (2%)
Query 2 ADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHL 61
AD P + +LDAQSPAADLVRVYLNGIGKTALL AA EV+LAKRIEAG++A H+
Sbjct 27 ADTPVELSAD----ELDAQSPAADLVRVYLNGIGKTALLTAAQEVDLAKRIEAGVFARHV 82
Query 62 LETR----KRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 117
L+T + L + RDL AV RDG AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQ
Sbjct 83 LDTAAAEGRELDPDYARDLRAVARDGARARNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 142
Query 118 EGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARI 177
EGNLGLIRA+EKFDY KGFKFSTYATWWIRQAITRGMADQ+RTIRLPVHLVEQVNKLARI
Sbjct 143 EGNLGLIRAVEKFDYAKGFKFSTYATWWIRQAITRGMADQARTIRLPVHLVEQVNKLARI 202
Query 178 KREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDA 237
KR+MHQ LGREAT ELA ESG+P +KI DLL+H+RDPVSLDMPVGSEEEAPLGDFIEDA
Sbjct 203 KRDMHQRLGREATHAELAEESGLPEEKIADLLDHARDPVSLDMPVGSEEEAPLGDFIEDA 262
Query 238 EAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRER 297
EA AEN VI+ LLH D+R VLATLDERE VIR+R+GLDDGQP TLDQIG+ FGLSRER
Sbjct 263 EAADAENTVISHLLHDDLRRVLATLDEREQNVIRMRYGLDDGQPCTLDQIGRRFGLSRER 322
Query 298 VRQIERDVMSKLRHGERADRLRSYAS 323
VRQIER+VM+KLR GERADRLR+YAS
Sbjct 323 VRQIEREVMAKLRVGERADRLRAYAS 348
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length=380
Score = 498 bits (1283), Expect = 4e-139, Method: Compositional matrix adjust.
Identities = 249/314 (80%), Positives = 277/314 (89%), Gaps = 6/314 (1%)
Query 16 DLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETR------KRLG 69
DLDAQSPAADLVRVYLNGIG+TALL AA EV+LAKRIEAG++A+H L+T + L
Sbjct 67 DLDAQSPAADLVRVYLNGIGRTALLTAAEEVDLAKRIEAGIFAQHRLDTATAEGTLESLD 126
Query 70 ENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEK 129
+RDL AVVRDG A+ HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EK
Sbjct 127 PQYRRDLRAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEK 186
Query 130 FDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREA 189
FDYTKGFKFSTYATWWIRQAITRGMADQ+RTIRLPVHLVEQVNKLARIKR+MHQ GRE
Sbjct 187 FDYTKGFKFSTYATWWIRQAITRGMADQARTIRLPVHLVEQVNKLARIKRDMHQRQGREP 246
Query 190 TDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAE 249
++ ELA ESGIP KI+DLL+H+RDPVSLDMPVGSEEEAPLGDFIEDAEA AEN VI+
Sbjct 247 SEAELAQESGIPEHKISDLLDHARDPVSLDMPVGSEEEAPLGDFIEDAEATDAENTVISS 306
Query 250 LLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKL 309
LL D+R VLATL++RE +VIR+RFGLDDGQPRTLDQIG+ F LSRERVRQIER+VM+KL
Sbjct 307 LLSDDLRRVLATLEDREQKVIRMRFGLDDGQPRTLDQIGRAFTLSRERVRQIEREVMAKL 366
Query 310 RHGERADRLRSYAS 323
R GERAD+LR+YAS
Sbjct 367 RVGERADKLRAYAS 380
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM
44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM
44702]
Length=397
Score = 497 bits (1279), Expect = 1e-138, Method: Compositional matrix adjust.
Identities = 243/303 (81%), Positives = 272/303 (90%), Gaps = 0/303 (0%)
Query 20 QSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAV 79
++P+ADLVRVYLNGIGKTALL AA EVEL++RIEAGLYAEHLLET ++L RKRDL +
Sbjct 94 ENPSADLVRVYLNGIGKTALLTAADEVELSQRIEAGLYAEHLLETGEKLTRARKRDLKIL 153
Query 80 VRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 139
R+G AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFS
Sbjct 154 AREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFS 213
Query 140 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESG 199
TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+QHLGREAT+EELA ESG
Sbjct 214 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 273
Query 200 IPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 259
I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED+++ AE AV+A L H+D+R+VL
Sbjct 274 IDESKIETLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDSTDAEAAVVASLRHSDVRAVL 333
Query 260 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLR 319
TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM+KLR GERA++LR
Sbjct 334 DTLEEREQDVIKLRYGLDDGMPRTLDQIGRSFGLSRERVRQIEREVMAKLREGERAEKLR 393
Query 320 SYA 322
YA
Sbjct 394 EYA 396
>gi|336325738|ref|YP_004605704.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM
45100]
gi|336101720|gb|AEI09540.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM
45100]
Length=337
Score = 488 bits (1257), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 241/303 (80%), Positives = 268/303 (89%), Gaps = 0/303 (0%)
Query 20 QSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAV 79
++P+ADLVRVYLNGIGKTALL A EVEL++RIE GLYAEHLL+ L RKRDL +
Sbjct 34 ENPSADLVRVYLNGIGKTALLTAEDEVELSQRIEVGLYAEHLLKNSTDLTRARKRDLKIL 93
Query 80 VRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 139
R+G+AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS
Sbjct 94 AREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 153
Query 140 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESG 199
TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+QHLGREAT+EELA ESG
Sbjct 154 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 213
Query 200 IPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 259
I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED++A AE AV+A L H+D+R+VL
Sbjct 214 IEESKIELLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAEAAVVASLRHSDVRAVL 273
Query 260 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLR 319
TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM+KLR G RAD+LR
Sbjct 274 GTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGHRADKLR 333
Query 320 SYA 322
YA
Sbjct 334 EYA 336
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium jeikeium
ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium jeikeium
ATCC 43734]
Length=343
Score = 487 bits (1254), Expect = 8e-136, Method: Compositional matrix adjust.
Identities = 237/303 (79%), Positives = 269/303 (89%), Gaps = 0/303 (0%)
Query 20 QSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAV 79
++P+ADLVRVYLNGIGKTALL A EVEL+KRIE GLY+E+LL ++L +KRDL +
Sbjct 40 ENPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYSEYLLSNAEKLTRAKKRDLKVL 99
Query 80 VRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 139
R+G+AAR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS
Sbjct 100 AREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 159
Query 140 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESG 199
TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q LGREAT+EEL+ ESG
Sbjct 160 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSEESG 219
Query 200 IPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 259
I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED++A AE AV+A L H+D+R+VL
Sbjct 220 IEESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAETAVVASLRHSDVRAVL 279
Query 260 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLR 319
TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM+KLR G+RAD+LR
Sbjct 280 GTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGDRADKLR 339
Query 320 SYA 322
YA
Sbjct 340 EYA 342
>gi|213964561|ref|ZP_03392761.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum
SK46]
gi|213952754|gb|EEB64136.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum
SK46]
Length=329
Score = 483 bits (1242), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 236/303 (78%), Positives = 270/303 (90%), Gaps = 0/303 (0%)
Query 21 SPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAVV 80
+P+ADLVRVYLNGIGKTALL+A EVEL+KRIEAG+YAEHLL+T ++ +KRD+ +
Sbjct 27 NPSADLVRVYLNGIGKTALLSAEEEVELSKRIEAGVYAEHLLQTGAKMTRAKKRDVKILA 86
Query 81 RDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 140
++G+AAR HLLEANLRLVVSLAKRYT RGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
Sbjct 87 KEGKAARAHLLEANLRLVVSLAKRYTNRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 146
Query 141 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGI 200
YATWWIRQAITRGMADQSRTIRLPVHLVEQVNK++RIKRE++Q LGREAT+EELA ESGI
Sbjct 147 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKISRIKRELYQQLGREATNEELAEESGI 206
Query 201 PIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 260
P KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE AV+A L H D+R VL+
Sbjct 207 PEAKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDAEEAVVASLRHHDVRKVLS 266
Query 261 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRS 320
TL+ RE +VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VMSKLR G+RAD+LR
Sbjct 267 TLEIREQEVIKLRYGLDDGLPRTLDQIGRHFGLSRERVRQIEREVMSKLREGDRADKLRE 326
Query 321 YAS 323
YA+
Sbjct 327 YAN 329
Lambda K H
0.318 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 570943570224
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40