BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2719c
Length=165
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609856|ref|NP_217235.1| hypothetical protein Rv2719c [Mycob... 319 1e-85
gi|31793891|ref|NP_856384.1| hypothetical protein Mb2738c [Mycob... 317 5e-85
gi|289444261|ref|ZP_06434005.1| conserved membrane protein [Myco... 316 6e-85
gi|323718713|gb|EGB27875.1| membrane protein [Mycobacterium tube... 215 1e-54
gi|167970058|ref|ZP_02552335.1| hypothetical protein MtubH3_1931... 183 6e-45
gi|183982007|ref|YP_001850298.1| hypothetical protein MMAR_1993 ... 159 9e-38
gi|336458918|gb|EGO37874.1| LysM domain-containing protein [Myco... 156 1e-36
gi|41408933|ref|NP_961769.1| hypothetical protein MAP2835c [Myco... 156 1e-36
gi|118618683|ref|YP_907015.1| hypothetical protein MUL_3362 [Myc... 155 2e-36
gi|15827480|ref|NP_301743.1| hypothetical protein ML1004 [Mycoba... 143 7e-33
gi|118462953|ref|YP_882790.1| LysM domain-containing protein [My... 141 4e-32
gi|333991098|ref|YP_004523712.1| hypothetical protein JDM601_245... 138 3e-31
gi|120403432|ref|YP_953261.1| peptidoglycan-binding LysM [Mycoba... 132 1e-29
gi|254821024|ref|ZP_05226025.1| LysM domain-containing protein [... 131 4e-29
gi|342858412|ref|ZP_08715067.1| LysM domain-containing protein [... 126 9e-28
gi|118468533|ref|YP_887075.1| DNA-damage-inducible protein [Myco... 126 1e-27
gi|296171812|ref|ZP_06852926.1| DNA-damage-inducible protein [My... 125 3e-27
gi|145224536|ref|YP_001135214.1| peptidoglycan-binding LysM [Myc... 124 3e-27
gi|108799136|ref|YP_639333.1| peptidoglycan-binding LysM [Mycoba... 124 4e-27
gi|254776053|ref|ZP_05217569.1| hypothetical protein MaviaA2_154... 123 9e-27
gi|315444867|ref|YP_004077746.1| LysM domain-containing protein ... 114 7e-24
gi|240169679|ref|ZP_04748338.1| hypothetical protein MkanA1_1022... 104 5e-21
gi|169630120|ref|YP_001703769.1| hypothetical protein MAB_3037c ... 84.0 7e-15
gi|226366184|ref|YP_002783967.1| hypothetical protein ROP_67750 ... 61.6 4e-08
gi|111023747|ref|YP_706719.1| hypothetical protein RHA1_ro06789 ... 60.1 1e-07
gi|312139400|ref|YP_004006736.1| peptidoglycan binding protein [... 58.2 4e-07
gi|325672716|ref|ZP_08152412.1| peptidoglycan-binding LysM [Rhod... 58.2 4e-07
gi|226306264|ref|YP_002766224.1| hypothetical protein RER_27770 ... 57.4 7e-07
gi|229490906|ref|ZP_04384741.1| DNA-damage-inducible protein [Rh... 57.0 1e-06
gi|302525526|ref|ZP_07277868.1| predicted protein [Streptomyces ... 55.8 2e-06
gi|262202156|ref|YP_003273364.1| peptidoglycan-binding lysin dom... 54.3 6e-06
gi|72162550|ref|YP_290207.1| peptidoglycan-binding LysM [Thermob... 53.9 8e-06
gi|326384480|ref|ZP_08206160.1| peptidoglycan-binding lysin doma... 53.1 1e-05
gi|337747181|ref|YP_004641343.1| LexA repressor [Paenibacillus m... 51.6 4e-05
gi|256375570|ref|YP_003099230.1| peptidoglycan-binding LysM [Act... 48.5 3e-04
gi|170781621|ref|YP_001709953.1| hypothetical protein CMS_1215A ... 48.5 3e-04
gi|148273198|ref|YP_001222759.1| hypothetical protein CMM_2017 [... 48.1 4e-04
gi|283458466|ref|YP_003363092.1| hypothetical protein RMDY18_144... 47.0 0.001
gi|227495181|ref|ZP_03925497.1| hypothetical protein HMPREF0044_... 47.0 0.001
gi|255326349|ref|ZP_05367433.1| peptidoglycan-binding LysM [Roth... 45.8 0.002
gi|343926990|ref|ZP_08766478.1| hypothetical protein GOALK_077_0... 45.8 0.002
gi|134098343|ref|YP_001104004.1| hypothetical protein SACE_1761 ... 45.1 0.003
gi|300784299|ref|YP_003764590.1| hypothetical protein AMED_2392 ... 44.7 0.005
gi|119718037|ref|YP_925002.1| peptidoglycan-binding LysM [Nocard... 43.1 0.015
gi|86742191|ref|YP_482591.1| peptidoglycan-binding LysM [Frankia... 42.7 0.018
gi|220931485|ref|YP_002508393.1| cell wall hydrolase SleB [Halot... 41.6 0.038
gi|323356741|ref|YP_004223137.1| hypothetical protein MTES_0293 ... 40.8 0.068
gi|227495847|ref|ZP_03926158.1| hypothetical protein HMPREF0058_... 40.8 0.069
gi|296139523|ref|YP_003646766.1| peptidoglycan-binding lysin dom... 40.4 0.088
gi|326333211|ref|ZP_08199458.1| peptidoglycan-binding LysM [Noca... 40.4 0.099
>gi|15609856|ref|NP_217235.1| hypothetical protein Rv2719c [Mycobacterium tuberculosis H37Rv]
gi|15842257|ref|NP_337294.1| hypothetical protein MT2792 [Mycobacterium tuberculosis CDC1551]
gi|148662560|ref|YP_001284083.1| hypothetical protein MRA_2747 [Mycobacterium tuberculosis H37Ra]
34 more sequence titles
Length=165
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG 60
MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG
Sbjct 1 MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG 60
Query 61 SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG 120
SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG
Sbjct 61 SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG 120
Query 121 ESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
ESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG
Sbjct 121 ESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
>gi|31793891|ref|NP_856384.1| hypothetical protein Mb2738c [Mycobacterium bovis AF2122/97]
gi|121638594|ref|YP_978818.1| hypothetical protein BCG_2732c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224991086|ref|YP_002645775.1| hypothetical protein JTY_2726 [Mycobacterium bovis BCG str. Tokyo
172]
19 more sequence titles
Length=165
Score = 317 bits (811), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG 60
MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG
Sbjct 1 MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG 60
Query 61 SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG 120
SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG
Sbjct 61 SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG 120
Query 121 ESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
ESL+DVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG
Sbjct 121 ESLHDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
>gi|289444261|ref|ZP_06434005.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289570895|ref|ZP_06451122.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289751372|ref|ZP_06510750.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289754821|ref|ZP_06514199.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289417180|gb|EFD14420.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289544649|gb|EFD48297.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289691959|gb|EFD59388.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289695408|gb|EFD62837.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=165
Score = 316 bits (810), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 163/165 (99%), Positives = 165/165 (100%), Gaps = 0/165 (0%)
Query 1 MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG 60
MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG
Sbjct 1 MTPVRPPHTPDPLNLRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHG 60
Query 61 SRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG 120
SRPVPPATTVGLALLAAAITLWLG+VAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG
Sbjct 61 SRPVPPATTVGLALLAAAITLWLGMVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETG 120
Query 121 ESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
ESL+DVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG
Sbjct 121 ESLHDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
>gi|323718713|gb|EGB27875.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=112
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 54 MSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLA 113
MSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLA
Sbjct 1 MSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLA 60
Query 114 VVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
VVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG
Sbjct 61 VVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 112
>gi|167970058|ref|ZP_02552335.1| hypothetical protein MtubH3_19313 [Mycobacterium tuberculosis
H37Ra]
gi|254551775|ref|ZP_05142222.1| hypothetical protein Mtube_15172 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|297635327|ref|ZP_06953107.1| hypothetical protein MtubK4_14445 [Mycobacterium tuberculosis
KZN 4207]
gi|297732323|ref|ZP_06961441.1| hypothetical protein MtubKR_14594 [Mycobacterium tuberculosis
KZN R506]
Length=96
Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 70 VGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVR 129
+GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVR
Sbjct 1 MGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVR 60
Query 130 VAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
VAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG
Sbjct 61 VAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 96
>gi|183982007|ref|YP_001850298.1| hypothetical protein MMAR_1993 [Mycobacterium marinum M]
gi|183175333|gb|ACC40443.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=180
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 98/155 (64%), Positives = 108/155 (70%), Gaps = 5/155 (3%)
Query 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70
+RGP+ G P R A SRR SRP APL Y TGV +S T H RP ATTV
Sbjct 27 IRGPVGGAIHEPVTGRGRLATSRRVRPSRPAVAPLSYRGTGVALSATAHRRRPASVATTV 86
Query 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130
GLALLAA ITLWLGLVA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL DVA RV
Sbjct 87 GLALLAAIITLWLGLVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLQDVAARV 145
Query 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
AP+AP RQV +RIRELN L + A GQTLIAPVG
Sbjct 146 APDAPVRQVVERIRELNALGSSMPASGQTLIAPVG 180
>gi|336458918|gb|EGO37874.1| LysM domain-containing protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=164
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/160 (60%), Positives = 108/160 (68%), Gaps = 8/160 (5%)
Query 10 PDPLNLRGPLDGP----RWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVP 65
P P +LR P++GP R+ R + RRPG+ RP GA RYH TGV MS H R V
Sbjct 9 PRPSSLRRPVNGPVQGVRYGRDGLTRPRRPGQVRPAGAATRYHGTGVAMSVAPHRRRSVT 68
Query 66 PATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYD 125
TTVGLAL A AITLWLGLVA GQ++ G + +A VPDRLAVVRV+ GESL D
Sbjct 69 WVTTVGLALAAGAITLWLGLVANVGQVLNGDAPSSAA----HVPDRLAVVRVDPGESLSD 124
Query 126 VAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
VA RVAP+AP QVADRIRELN L +P L GQTLIAPVG
Sbjct 125 VAHRVAPDAPAAQVADRIRELNDLNSPTLVAGQTLIAPVG 164
>gi|41408933|ref|NP_961769.1| hypothetical protein MAP2835c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397292|gb|AAS05152.1| hypothetical protein MAP_2835c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=170
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/160 (60%), Positives = 108/160 (68%), Gaps = 8/160 (5%)
Query 10 PDPLNLRGPLDGP----RWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVP 65
P P +LR P++GP R+ R + RRPG+ RP GA RYH TGV MS H R V
Sbjct 15 PRPSSLRRPVNGPVQGVRYGRDGLTRPRRPGQVRPAGAATRYHGTGVAMSVAPHRRRSVT 74
Query 66 PATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYD 125
TTVGLAL A AITLWLGLVA GQ++ G + +A VPDRLAVVRV+ GESL D
Sbjct 75 WVTTVGLALAAGAITLWLGLVANVGQVLNGDAPSSAA----HVPDRLAVVRVDPGESLSD 130
Query 126 VAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
VA RVAP+AP QVADRIRELN L +P L GQTLIAPVG
Sbjct 131 VAHRVAPDAPAAQVADRIRELNDLNSPTLVAGQTLIAPVG 170
>gi|118618683|ref|YP_907015.1| hypothetical protein MUL_3362 [Mycobacterium ulcerans Agy99]
gi|118570793|gb|ABL05544.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=180
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/155 (62%), Positives = 106/155 (69%), Gaps = 5/155 (3%)
Query 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70
+RGP+ G P R A SRR SRP APL Y TGV +S T H RP ATTV
Sbjct 27 IRGPVGGTIHEPVTGRGRLATSRRVRPSRPAVAPLSYRGTGVALSATAHRRRPASVATTV 86
Query 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130
GL LLAA ITLWLGLVA FG+M GGSA+ S S+G VPDRL VVRV+ GESL DVA RV
Sbjct 87 GLTLLAAIITLWLGLVAHFGEMANGGSANVSPISSG-VPDRLTVVRVDAGESLQDVAARV 145
Query 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
AP+AP RQV +RIRELN L + A GQTL+APVG
Sbjct 146 APDAPVRQVVERIRELNALGSSMPASGQTLVAPVG 180
>gi|15827480|ref|NP_301743.1| hypothetical protein ML1004 [Mycobacterium leprae TN]
gi|221229957|ref|YP_002503373.1| hypothetical protein MLBr_01004 [Mycobacterium leprae Br4923]
gi|467097|gb|AAA17280.1| B2235_C3_243 [Mycobacterium leprae]
gi|13093030|emb|CAC31385.1| possible conserved membrane protein [Mycobacterium leprae]
gi|219933064|emb|CAR71099.1| possible conserved membrane protein [Mycobacterium leprae Br4923]
Length=164
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/151 (57%), Positives = 97/151 (65%), Gaps = 10/151 (6%)
Query 18 PLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAA 77
P+ GPR E A SRRP SR AP+RY V M H R V A T+GLALLA
Sbjct 21 PILGPRCGSGESAGSRRPAPSRSASAPMRYSGASVAMLVAPHRGRTVSLAKTIGLALLAG 80
Query 78 AITLWLGLVAQFGQMITGGSADGSADSTG---RVPDRLAVVRVETGESLYDVAVRVAPNA 134
ITLWLGL+A Q+I G D+TG VP+RLAVVRVE GESL DVA RVAP+A
Sbjct 81 MITLWLGLMADVSQVIDG-------DATGFVTHVPNRLAVVRVEAGESLQDVAARVAPDA 133
Query 135 PTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
P RQV++RIRELN L + L GQTLIAPVG
Sbjct 134 PVRQVSERIRELNVLDSSMLVAGQTLIAPVG 164
>gi|118462953|ref|YP_882790.1| LysM domain-containing protein [Mycobacterium avium 104]
gi|118164240|gb|ABK65137.1| LysM domain protein [Mycobacterium avium 104]
Length=164
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/160 (60%), Positives = 107/160 (67%), Gaps = 8/160 (5%)
Query 10 PDPLNLRGPLDGP----RWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVP 65
P P +LR P++GP R+ R + RRPG RP GA RYH TGV MS H R V
Sbjct 9 PRPSSLRRPVNGPVQGVRYGRDGLTRPRRPGPVRPAGAATRYHGTGVAMSIAPHRRRSVT 68
Query 66 PATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYD 125
TTVGLAL A AITLWLGLVA GQ++ G + +A VPDRLAVVRV+ GESL D
Sbjct 69 WVTTVGLALAAGAITLWLGLVANVGQVLNGDAPSSAA----HVPDRLAVVRVDPGESLSD 124
Query 126 VAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
VA RVAP+AP QVADRIRELN L +P L GQTLIAPVG
Sbjct 125 VAHRVAPDAPAAQVADRIRELNDLNSPTLLAGQTLIAPVG 164
>gi|333991098|ref|YP_004523712.1| hypothetical protein JDM601_2458 [Mycobacterium sp. JDM601]
gi|333487066|gb|AEF36458.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=166
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/168 (56%), Positives = 110/168 (66%), Gaps = 22/168 (13%)
Query 9 TPDPLNLRGPLDGPRWR-----RAEPAQSR--RPGRSRPGGAPLRYHRTGVGMSRTGHG- 60
T DP R P+ GPR R RA +R R RSRP GAPL + TGV MSRT H
Sbjct 10 TFDPAE-RAPV-GPRRRPVTSGRAHAVHTRPARVVRSRPDGAPLSHRGTGVLMSRTAHRP 67
Query 61 --SRPVPPATTVGLALLAAAITLWLGLVAQFG-QMITGGSADGSADSTGRVPDRLAVVRV 117
++P+ PATTV LAL+AA IT+WLGL+AQFG M GGSA VP L VVRV
Sbjct 68 RPTKPITPATTVVLALIAAGITVWLGLIAQFGATMADGGSA---------VPGELGVVRV 118
Query 118 ETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
++GE+L +A RVAP+APT QV DRIRELN L++ AL GQTLIAP+G
Sbjct 119 QSGETLQHLAARVAPDAPTSQVVDRIRELNSLESAALDAGQTLIAPIG 166
>gi|120403432|ref|YP_953261.1| peptidoglycan-binding LysM [Mycobacterium vanbaalenii PYR-1]
gi|119956250|gb|ABM13255.1| Peptidoglycan-binding LysM [Mycobacterium vanbaalenii PYR-1]
Length=202
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/125 (61%), Positives = 91/125 (73%), Gaps = 9/125 (7%)
Query 41 GGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADG 100
GGAP+RY TGV +SR H RP+ PATTV LAL+AAAITLWLGLV QFG+++ G A+
Sbjct 87 GGAPVRYRGTGVLVSRAPHRRRPITPATTVLLALVAAAITLWLGLVGQFGELV-GDQAE- 144
Query 101 SADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTL 160
+P RLAVV+V++GESL VA RVAP+AP V DRIRELN L++ AL GQTL
Sbjct 145 -------IPGRLAVVQVQSGESLQHVAQRVAPDAPVADVVDRIRELNKLESVALDAGQTL 197
Query 161 IAPVG 165
IAPV
Sbjct 198 IAPVA 202
>gi|254821024|ref|ZP_05226025.1| LysM domain-containing protein [Mycobacterium intracellulare
ATCC 13950]
Length=164
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/151 (61%), Positives = 105/151 (70%), Gaps = 4/151 (2%)
Query 15 LRGPLDGPRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLAL 74
+ GP+ G R+ R A+SRRP SRP GAP RY+ TGV +S H R V ATTVGLAL
Sbjct 18 VNGPVQGVRYGRDGLARSRRPVPSRPAGAPTRYYGTGVAISVAPHRRRAVTWATTVGLAL 77
Query 75 LAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNA 134
A AITLWLGLVA GQ + G S + +A VP+RLAVVRV+ GESL DVA RVAP+A
Sbjct 78 AAGAITLWLGLVANVGQALNGDSTNSAAP----VPNRLAVVRVDAGESLQDVAHRVAPDA 133
Query 135 PTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
P VADRIRELN L +P L GQTLIAP+G
Sbjct 134 PAAAVADRIRELNDLNSPTLVAGQTLIAPIG 164
>gi|342858412|ref|ZP_08715067.1| LysM domain-containing protein [Mycobacterium colombiense CECT
3035]
gi|342134116|gb|EGT87296.1| LysM domain-containing protein [Mycobacterium colombiense CECT
3035]
Length=108
Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/112 (64%), Positives = 81/112 (73%), Gaps = 4/112 (3%)
Query 54 MSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLA 113
MS H R A+T+GLAL A AITLWLGLVA GQ++ G S++ +A VPDRLA
Sbjct 1 MSAAPHRRRVTTWASTIGLALAAGAITLWLGLVANVGQVLNGDSSNSAA----HVPDRLA 56
Query 114 VVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
VVRV+ GESL D A RVAP+APT QVADRIRELN L +P L GQTLIAPVG
Sbjct 57 VVRVDAGESLQDFAHRVAPDAPTTQVADRIRELNDLHSPNLMAGQTLIAPVG 108
>gi|118468533|ref|YP_887075.1| DNA-damage-inducible protein [Mycobacterium smegmatis str. MC2
155]
gi|71360997|emb|CAJ19248.1| DNA-damage-inducible protein [Mycobacterium smegmatis]
gi|118169820|gb|ABK70716.1| DNA-damage-inducible protein [Mycobacterium smegmatis str. MC2
155]
Length=185
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/133 (60%), Positives = 94/133 (71%), Gaps = 8/133 (6%)
Query 33 RRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQM 92
RRP RPGGA LR+ TGV MSR H RP+ PATTV LAL+AA IT+WLGLVAQFG +
Sbjct 61 RRPQPGRPGGAALRHRGTGVLMSRASH-RRPITPATTVVLALVAAGITVWLGLVAQFGGV 119
Query 93 ITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTP 152
+ G SA S VP LAVV+V++GE+L VA RVAP+AP V +IR+LN L++
Sbjct 120 L-GSSAPVS------VPSELAVVQVQSGETLQQVARRVAPDAPVAAVVQQIRDLNQLESA 172
Query 153 ALAVGQTLIAPVG 165
AL GQTLIAPVG
Sbjct 173 ALDAGQTLIAPVG 185
>gi|296171812|ref|ZP_06852926.1| DNA-damage-inducible protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893948|gb|EFG73716.1| DNA-damage-inducible protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=96
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/99 (71%), Positives = 76/99 (77%), Gaps = 4/99 (4%)
Query 67 ATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDV 126
ATTV LAL A AITLWLGLV GQ++ GGS +A VPDRLAVVRVE GESL DV
Sbjct 2 ATTVWLALAAGAITLWLGLVGNVGQVLNGGSGGSAA----HVPDRLAVVRVEAGESLQDV 57
Query 127 AVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
A RVAP+AP RQVADRIRELN + +PAL GQTLIAPVG
Sbjct 58 AHRVAPDAPARQVADRIRELNDMHSPALVAGQTLIAPVG 96
>gi|145224536|ref|YP_001135214.1| peptidoglycan-binding LysM [Mycobacterium gilvum PYR-GCK]
gi|145217022|gb|ABP46426.1| Peptidoglycan-binding LysM [Mycobacterium gilvum PYR-GCK]
Length=203
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/134 (55%), Positives = 90/134 (68%), Gaps = 9/134 (6%)
Query 32 SRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQ 91
SR+P RP GA +RY TGV +SR H RP+ P TVGLAL+A AITLWLGLVAQ G
Sbjct 79 SRQPRPQRPAGAAVRYRGTGVLVSRASHRRRPITPMATVGLALVAGAITLWLGLVAQVG- 137
Query 92 MITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQT 151
G + + ++P RLAVV+V++GESL VA RVAP+AP +V RI+ELN L +
Sbjct 138 --------GVSGAETQMPGRLAVVQVQSGESLQHVARRVAPDAPVTEVVARIQELNELDS 189
Query 152 PALAVGQTLIAPVG 165
A+ GQTLIAPV
Sbjct 190 AAVDAGQTLIAPVA 203
>gi|108799136|ref|YP_639333.1| peptidoglycan-binding LysM [Mycobacterium sp. MCS]
gi|119868251|ref|YP_938203.1| peptidoglycan-binding LysM [Mycobacterium sp. KMS]
gi|126434744|ref|YP_001070435.1| peptidoglycan-binding LysM [Mycobacterium sp. JLS]
gi|108769555|gb|ABG08277.1| Peptidoglycan-binding LysM [Mycobacterium sp. MCS]
gi|119694340|gb|ABL91413.1| Peptidoglycan-binding LysM [Mycobacterium sp. KMS]
gi|126234544|gb|ABN97944.1| Peptidoglycan-binding LysM [Mycobacterium sp. JLS]
Length=148
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/137 (55%), Positives = 88/137 (65%), Gaps = 9/137 (6%)
Query 29 PAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQ 88
P +RRP RP GA LR+ GV +SR H RP+ PATTV LAL+AA IT+WLGLVA
Sbjct 21 PVDARRPRAGRPAGAALRHRGNGVLVSRASHRRRPITPATTVLLALVAAGITVWLGLVAN 80
Query 89 FGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNG 148
G G A VP LAVV+V+ GESL+ VA RVAP+AP V +RIRELN
Sbjct 81 LG---------GVAGQQAPVPADLAVVQVQMGESLHQVAQRVAPDAPVGAVVERIRELNQ 131
Query 149 LQTPALAVGQTLIAPVG 165
L + A+ GQTLIAPVG
Sbjct 132 LDSAAIDAGQTLIAPVG 148
>gi|254776053|ref|ZP_05217569.1| hypothetical protein MaviaA2_15475 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=110
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/114 (64%), Positives = 80/114 (71%), Gaps = 4/114 (3%)
Query 52 VGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDR 111
+ MS H R V TTVGLAL A AITLWLGLVA GQ++ G + +A VPDR
Sbjct 1 MAMSVAPHRRRSVTWVTTVGLALAAGAITLWLGLVANVGQVLNGDAPSSAA----HVPDR 56
Query 112 LAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
LAVVRV+ GESL DVA RVAP+AP QVADRIRELN L +P L GQTLIAPVG
Sbjct 57 LAVVRVDPGESLSDVAHRVAPDAPAAQVADRIRELNDLNSPTLVAGQTLIAPVG 110
>gi|315444867|ref|YP_004077746.1| LysM domain-containing protein [Mycobacterium sp. Spyr1]
gi|315263170|gb|ADT99911.1| LysM domain-containing protein [Mycobacterium sp. Spyr1]
Length=156
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/123 (55%), Positives = 83/123 (68%), Gaps = 9/123 (7%)
Query 42 GAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADGS 101
GA + Y TGV +SR H RP+ P TVGLAL+A AITLWLGLVAQ G G
Sbjct 42 GAAIGYRGTGVLVSRASHRRRPITPMATVGLALVAGAITLWLGLVAQVG---------GV 92
Query 102 ADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLI 161
+ + ++P RLAVV+V++GESL VA RVAP+AP +V RI+ELN L + A+ GQTLI
Sbjct 93 SGAETQMPGRLAVVQVQSGESLQHVARRVAPDAPVTEVVARIQELNELDSAAVDAGQTLI 152
Query 162 APV 164
APV
Sbjct 153 APV 155
>gi|240169679|ref|ZP_04748338.1| hypothetical protein MkanA1_10227 [Mycobacterium kansasii ATCC
12478]
Length=90
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/94 (61%), Positives = 66/94 (71%), Gaps = 4/94 (4%)
Query 72 LALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVA 131
+A+LA ITLWLGL+A FG+++ AD S VPDRLAVVRV GESL DVA RVA
Sbjct 1 MAVLAGMITLWLGLMAHFGELVNSNYAD----SPAPVPDRLAVVRVAAGESLQDVAARVA 56
Query 132 PNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165
P+ P RQV +RIRELN L + GQTLIAPVG
Sbjct 57 PDMPVRQVVERIRELNDLDSSMPVAGQTLIAPVG 90
>gi|169630120|ref|YP_001703769.1| hypothetical protein MAB_3037c [Mycobacterium abscessus ATCC
19977]
gi|169242087|emb|CAM63115.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=170
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/130 (44%), Positives = 74/130 (57%), Gaps = 12/130 (9%)
Query 39 RPGGAPLRYHRTGV---GMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITG 95
RP G P+ Y G+ G++ H RPV T+ +A+ AA T+WL ++ Q G
Sbjct 50 RPAGRPVAYRGNGIRVSGVAHRVHRRRPVSLKATIVVAVGAAVATMWLLMLGQVSAAGIG 109
Query 96 GSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALA 155
G+ VPDRLAVV+V GE+L DVA RVAP AP V +IRELN L + +
Sbjct 110 GAG---------VPDRLAVVQVAPGETLADVASRVAPEAPRSAVVSKIRELNELDSATVQ 160
Query 156 VGQTLIAPVG 165
GQTL++PVG
Sbjct 161 AGQTLVSPVG 170
>gi|226366184|ref|YP_002783967.1| hypothetical protein ROP_67750 [Rhodococcus opacus B4]
gi|226244674|dbj|BAH55022.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=165
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/144 (37%), Positives = 68/144 (48%), Gaps = 14/144 (9%)
Query 23 RWRRAEPAQSRRPGR-SRPGGAPLRYHRTGVGMSRTGH--GSRPVPPATTVGLALLAAAI 79
R R EP + R G RP + Y + G+SR H G+ V T + ++ A +
Sbjct 28 RAYRTEPRRRRTDGELRRPSSGAVAYRPSHTGVSRADHERGANDVSWRTVLAGVVITAGV 87
Query 80 TLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQV 139
L VAQ GG+ SA + VV+V GESL VA R+AP P QV
Sbjct 88 LCGLFGVAQLA---AGGTVSHSAATE--------VVQVRRGESLAAVAARIAPETPVAQV 136
Query 140 ADRIRELNGLQTPALAVGQTLIAP 163
+RI ELN + AL GQ+LI P
Sbjct 137 IERIMELNAMSNSALHPGQSLIVP 160
>gi|111023747|ref|YP_706719.1| hypothetical protein RHA1_ro06789 [Rhodococcus jostii RHA1]
gi|110823277|gb|ABG98561.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=165
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/142 (32%), Positives = 69/142 (49%), Gaps = 10/142 (7%)
Query 23 RWRRAEPAQSRRPGR-SRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITL 81
R R EP + R G RP + Y T G+SR H + VG ++ A++ +
Sbjct 28 RSYRTEPRRRRTDGELRRPSSGAVAYRPTHTGVSRADHSR----GSNDVGWRMVLASVVI 83
Query 82 WLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVAD 141
G++ + + DG ++S VV+V+ GESL +A R++P P QV +
Sbjct 84 TAGVLCGLVGVAQLATTDGVSNSAA-----TEVVQVQQGESLAALAARISPELPVAQVVE 138
Query 142 RIRELNGLQTPALAVGQTLIAP 163
+I ELN + AL GQ+LI P
Sbjct 139 QIMELNAMSNSALHPGQSLIVP 160
>gi|312139400|ref|YP_004006736.1| peptidoglycan binding protein [Rhodococcus equi 103S]
gi|311888739|emb|CBH48051.1| putative peptidoglycan binding protein [Rhodococcus equi 103S]
Length=194
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/144 (37%), Positives = 68/144 (48%), Gaps = 20/144 (13%)
Query 31 QSRRPGRSRP-------GGAPLRYHRTGVGMSRTG---HGSRPVPPATTVGLALLAAAIT 80
Q R+ +RP G AP R+ G +SR HG + T GL+ + A
Sbjct 57 QQRQRNTTRPAAGAVHYGSAP-RHGNAGTQVSRAAGPSHGRKRA----TSGLSAVVATFV 111
Query 81 LWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVA 140
+ G+VA + A+ T VP V+V GESL DVA RVAP AP QV
Sbjct 112 ITAGVVAGLDAI-----ANLRMAQTDSVPTSTDSVQVRRGESLGDVAARVAPEAPVAQVV 166
Query 141 DRIRELNGLQTPALAVGQTLIAPV 164
DRI ELN + + GQ LI+PV
Sbjct 167 DRIVELNAMSGAEVRPGQILISPV 190
>gi|325672716|ref|ZP_08152412.1| peptidoglycan-binding LysM [Rhodococcus equi ATCC 33707]
gi|325556593|gb|EGD26259.1| peptidoglycan-binding LysM [Rhodococcus equi ATCC 33707]
Length=224
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/141 (38%), Positives = 68/141 (49%), Gaps = 14/141 (9%)
Query 31 QSRRPGRSRP-------GGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWL 83
Q R+ +RP G AP R+ G +SR S AT+ GL+ + A +
Sbjct 87 QQRQRNTTRPAAGAVHYGSAP-RHGNAGTQVSRAAGPSHGRKRATS-GLSAVVATFVITA 144
Query 84 GLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRI 143
G+VA + A+ T VP V+V GESL DVA RVAP AP QV DRI
Sbjct 145 GVVAGLDAI-----ANLRMAQTDSVPTSTDSVQVRRGESLGDVAARVAPEAPVAQVVDRI 199
Query 144 RELNGLQTPALAVGQTLIAPV 164
ELN + + GQ LI+PV
Sbjct 200 VELNAMSGAEVRPGQILISPV 220
>gi|226306264|ref|YP_002766224.1| hypothetical protein RER_27770 [Rhodococcus erythropolis PR4]
gi|226185381|dbj|BAH33485.1| hypothetical protein RER_27770 [Rhodococcus erythropolis PR4]
Length=258
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/148 (34%), Positives = 67/148 (46%), Gaps = 11/148 (7%)
Query 17 GPLDGPRWRRAEPAQ-SRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALL 75
G + G R R P + SRP G HR VG+SR H V +
Sbjct 117 GAVSGSRSLRESPRRWDGEHDSSRPYGGSF-AHRNRVGVSRVEH---EVAAEDVSWKTVF 172
Query 76 AAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAP 135
A+ L ++A G G + G +T + VVRV GESL D+A +VAP
Sbjct 173 LGAVITALAVLALVG---IGALSSGDVAATNGATE---VVRVAAGESLSDIAAKVAPGQA 226
Query 136 TRQVADRIRELNGLQTPALAVGQTLIAP 163
V ++I +LN + + L+VGQTLI P
Sbjct 227 VGSVIEQIMDLNAMSSSGLSVGQTLIVP 254
>gi|229490906|ref|ZP_04384741.1| DNA-damage-inducible protein [Rhodococcus erythropolis SK121]
gi|229322296|gb|EEN88082.1| DNA-damage-inducible protein [Rhodococcus erythropolis SK121]
Length=237
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/149 (35%), Positives = 66/149 (45%), Gaps = 13/149 (8%)
Query 17 GPLDGPRWRRAEPAQ-SRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALL 75
G + G R R P + SRP G HR VG+SR H A VG
Sbjct 96 GAVSGSRSLRESPRRWDSEHDSSRPYGGSFA-HRNRVGVSRVEHE----VAAEDVGWK-- 148
Query 76 AAAITLWLGLV-AQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNA 134
T++LG V F + G S+ VVRV GESL D+A +VAP
Sbjct 149 ----TVFLGAVFTAFAVLALVGIGALSSGDVAATNGATEVVRVAAGESLSDIAAKVAPGQ 204
Query 135 PTRQVADRIRELNGLQTPALAVGQTLIAP 163
V ++I +LN + + L+VGQTLI P
Sbjct 205 AVGSVIEQIMDLNAMSSSGLSVGQTLIVP 233
>gi|302525526|ref|ZP_07277868.1| predicted protein [Streptomyces sp. AA4]
gi|302434421|gb|EFL06237.1| predicted protein [Streptomyces sp. AA4]
Length=455
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/84 (46%), Positives = 46/84 (55%), Gaps = 1/84 (1%)
Query 82 WLGLVAQFGQMI-TGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVA 140
WL +A +I TG GS S+G VP R A V V+ G+SL +A R APNA V
Sbjct 352 WLFAIAFVACLIVTGLGVFGSGVSSGPVPSRTASVSVQPGDSLGALAARFAPNADQSAVV 411
Query 141 DRIRELNGLQTPALAVGQTLIAPV 164
+RI+ELN L AL G L PV
Sbjct 412 ERIKELNNLDDTALLPGMPLTVPV 435
>gi|262202156|ref|YP_003273364.1| peptidoglycan-binding lysin domain-containing protein [Gordonia
bronchialis DSM 43247]
gi|262085503|gb|ACY21471.1| Peptidoglycan-binding lysin domain protein [Gordonia bronchialis
DSM 43247]
Length=203
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/98 (38%), Positives = 51/98 (53%), Gaps = 11/98 (11%)
Query 67 ATTVGLAL-LAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYD 125
AT VG+ + +A A+T+W + G + ADS P VV V G+SL
Sbjct 113 ATAVGVLVGVALAVTVW----------VIGIVGNNYADSVSPQPVSTQVVHVRAGDSLSS 162
Query 126 VAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
+A RVAP+ P + V D I ELN + + L VGQ L+ P
Sbjct 163 IAARVAPDMPRQTVIDEIVELNDMPSSGLRVGQPLLTP 200
>gi|72162550|ref|YP_290207.1| peptidoglycan-binding LysM [Thermobifida fusca YX]
gi|71916282|gb|AAZ56184.1| peptidoglycan-binding LysM [Thermobifida fusca YX]
Length=180
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/71 (37%), Positives = 41/71 (58%), Gaps = 0/71 (0%)
Query 93 ITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTP 152
++ +AD S D+ +P+R V V G++L+++A R+ P R+ D I E+NGL P
Sbjct 108 LSASNADASTDTLLHLPERSRTVVVNEGDTLWEIAERLRPAEDPRKTVDEIVEINGLTEP 167
Query 153 ALAVGQTLIAP 163
L GQ L+ P
Sbjct 168 VLTPGQELVLP 178
>gi|326384480|ref|ZP_08206160.1| peptidoglycan-binding lysin domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326196825|gb|EGD54019.1| peptidoglycan-binding lysin domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length=151
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 0/50 (0%)
Query 114 VVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
VV V +GESL +A R+AP+ PT V ++RELNGL+T L VGQ +IAP
Sbjct 99 VVYVRSGESLSALAERIAPSLPTDGVIAQLRELNGLETSGLHVGQAIIAP 148
>gi|337747181|ref|YP_004641343.1| LexA repressor [Paenibacillus mucilaginosus KNP414]
gi|336298370|gb|AEI41473.1| LexA repressor [Paenibacillus mucilaginosus KNP414]
Length=67
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (37%), Positives = 35/60 (59%), Gaps = 0/60 (0%)
Query 104 STGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
+ G P+ V V G++L+++A AP+ R D I++LNGL++ AL GQ L+ P
Sbjct 8 AAGTAPEEHEFVYVHQGDTLWEIASEYAPDEDIRDYIDEIKKLNGLKSSALQTGQKLLLP 67
>gi|256375570|ref|YP_003099230.1| peptidoglycan-binding LysM [Actinosynnema mirum DSM 43827]
gi|255919873|gb|ACU35384.1| Peptidoglycan-binding LysM [Actinosynnema mirum DSM 43827]
Length=165
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 34/60 (57%), Gaps = 2/60 (3%)
Query 108 VPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAV--GQTLIAPVG 165
VPDR V+ GE+L DVA R AP + VA+RI ELNGL P V GQ L P G
Sbjct 102 VPDRTTTAHVQVGETLRDVAERSAPGSDPEAVAERIAELNGLGGPDAVVRPGQALTVPDG 161
>gi|170781621|ref|YP_001709953.1| hypothetical protein CMS_1215A [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156189|emb|CAQ01331.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length=105
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/91 (40%), Positives = 50/91 (55%), Gaps = 8/91 (8%)
Query 73 ALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAP 132
AL+AA + L GLVA + GG+A S D+ G V V +G+SL+D+A +AP
Sbjct 18 ALVAAPLALGAGLVA-----LNGGAAVASKDAAGTT---FEYVTVSSGQSLWDLAEEIAP 69
Query 133 NAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
+A R V + +LN L T +A GQ L P
Sbjct 70 SADPRDVIASVVDLNRLPTSDVAAGQQLAVP 100
>gi|148273198|ref|YP_001222759.1| hypothetical protein CMM_2017 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831128|emb|CAN02080.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length=132
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/91 (39%), Positives = 51/91 (57%), Gaps = 8/91 (8%)
Query 73 ALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAP 132
AL+AA + L GLVA + GG+A S D++G V V +G+SL+D+A +AP
Sbjct 45 ALVAAPLALGAGLVA-----LNGGAAVASKDASGTT---FEYVTVSSGQSLWDLAEEIAP 96
Query 133 NAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
+A R V + +LN L + +A GQ L P
Sbjct 97 SADPRDVIASVVDLNRLPSSDVAAGQQLAVP 127
>gi|283458466|ref|YP_003363092.1| hypothetical protein RMDY18_14400 [Rothia mucilaginosa DY-18]
gi|283134507|dbj|BAI65272.1| protein containing LysM repeat [Rothia mucilaginosa DY-18]
Length=228
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (36%), Positives = 45/93 (49%), Gaps = 8/93 (8%)
Query 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130
GL LL A + LG ++ FG + + S T VV V+ GE+L+D+A V
Sbjct 140 GLPLLTLAALIVLGAISFFGPAASASMENASVTRT--------VVVVKHGETLWDIAQAV 191
Query 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
P TR RI ELN L + ++ GQ L P
Sbjct 192 DPQGDTRDTVVRIMELNSLTSTSVDAGQRLEIP 224
>gi|227495181|ref|ZP_03925497.1| hypothetical protein HMPREF0044_1035 [Actinomyces coleocanis
DSM 15436]
gi|226831633|gb|EEH64016.1| hypothetical protein HMPREF0044_1035 [Actinomyces coleocanis
DSM 15436]
Length=207
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (29%), Positives = 38/83 (46%), Gaps = 0/83 (0%)
Query 82 WLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVAD 141
W ++ F + G G+ +V GESL+ +A +A + +V
Sbjct 124 WKQVLVIFMLAVLAGVLVGNIWQASEATVAFTTTQVSAGESLWSIAAEIAGDNEVSEVVS 183
Query 142 RIRELNGLQTPALAVGQTLIAPV 164
I+ELN L + L VGQ+L+ PV
Sbjct 184 EIKELNNLSSTELQVGQSLLVPV 206
>gi|255326349|ref|ZP_05367433.1| peptidoglycan-binding LysM [Rothia mucilaginosa ATCC 25296]
gi|255296566|gb|EET75899.1| peptidoglycan-binding LysM [Rothia mucilaginosa ATCC 25296]
Length=207
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (36%), Positives = 45/93 (49%), Gaps = 8/93 (8%)
Query 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130
GL LL A + LG ++ FG + + S T VV V+ GE+L+D+A V
Sbjct 119 GLPLLTLAALIVLGAISFFGPAASASVENASVTRT--------VVVVKHGETLWDIAQAV 170
Query 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
P TR RI ELN L + ++ GQ L P
Sbjct 171 DPQGDTRDTVVRIMELNSLTSTSVDAGQRLEIP 203
>gi|343926990|ref|ZP_08766478.1| hypothetical protein GOALK_077_00140 [Gordonia alkanivorans NBRC
16433]
gi|343763048|dbj|GAA13404.1| hypothetical protein GOALK_077_00140 [Gordonia alkanivorans NBRC
16433]
Length=178
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/92 (39%), Positives = 48/92 (53%), Gaps = 10/92 (10%)
Query 72 LALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVA 131
LA + A+ +W+ +A GQ +A + S G VV V +G+SL +A RVA
Sbjct 94 LAGVGLALAVWV--IAVVGQ---NYAATVTPSSVG-----TEVVHVRSGDSLSTIASRVA 143
Query 132 PNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
P P V D I +LN L + L VGQ L+AP
Sbjct 144 PEMPREAVVDEIIQLNDLPSSGLRVGQPLLAP 175
>gi|134098343|ref|YP_001104004.1| hypothetical protein SACE_1761 [Saccharopolyspora erythraea NRRL
2338]
gi|291006955|ref|ZP_06564928.1| hypothetical protein SeryN2_20738 [Saccharopolyspora erythraea
NRRL 2338]
gi|133910966|emb|CAM01079.1| hypothetical protein SACE_1761 [Saccharopolyspora erythraea NRRL
2338]
Length=90
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (39%), Positives = 41/73 (57%), Gaps = 0/73 (0%)
Query 92 MITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQT 151
++ G GS VP AVV+V TG++L+ +A R AP + R V DRI ++NGL
Sbjct 15 LLVGLVGPGSGMGDEPVPAGTAVVQVRTGDTLWGLAERFAPASDPRLVVDRIAQMNGLNG 74
Query 152 PALAVGQTLIAPV 164
VG+ L+ P+
Sbjct 75 VTAEVGRPLVVPM 87
>gi|300784299|ref|YP_003764590.1| hypothetical protein AMED_2392 [Amycolatopsis mediterranei U32]
gi|299793813|gb|ADJ44188.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340525719|gb|AEK40924.1| hypothetical protein RAM_12170 [Amycolatopsis mediterranei S699]
Length=154
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/85 (37%), Positives = 40/85 (48%), Gaps = 1/85 (1%)
Query 82 WLGLVAQFGQMI-TGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVA 140
WL +A ++ TG G VP+R A V VE G++L +A R AP + V
Sbjct 65 WLAALAVASCLVVTGLGLFGGGAPGAPVPERTATVSVEQGDTLASLAARFAPESEPGAVV 124
Query 141 DRIRELNGLQTPALAVGQTLIAPVG 165
RI+ELN L L G L PV
Sbjct 125 ARIKELNRLDQAVLVPGLPLTVPVA 149
>gi|119718037|ref|YP_925002.1| peptidoglycan-binding LysM [Nocardioides sp. JS614]
gi|119538698|gb|ABL83315.1| Peptidoglycan-binding LysM [Nocardioides sp. JS614]
Length=118
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/51 (40%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 114 VVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAPV 164
VV V TG++L+D+A ++ + R + DRI+ LN L + + GQ L+ PV
Sbjct 67 VVMVGTGDTLWDIAAGLSDDGDVRAMVDRIQRLNALDSGMVVAGQRLLVPV 117
>gi|86742191|ref|YP_482591.1| peptidoglycan-binding LysM [Frankia sp. CcI3]
gi|86569053|gb|ABD12862.1| Peptidoglycan-binding LysM [Frankia sp. CcI3]
Length=124
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/44 (46%), Positives = 32/44 (73%), Gaps = 0/44 (0%)
Query 120 GESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
GE+L++VAV + +A TR + DR+ LN L++P +A GQ+L+ P
Sbjct 81 GETLWEVAVALDESADTRVMVDRLMRLNHLRSPLIAPGQSLLLP 124
>gi|220931485|ref|YP_002508393.1| cell wall hydrolase SleB [Halothermothrix orenii H 168]
gi|219992795|gb|ACL69398.1| cell wall hydrolase SleB [Halothermothrix orenii H 168]
Length=546
Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 25/74 (34%), Positives = 39/74 (53%), Gaps = 8/74 (10%)
Query 90 GQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGL 149
GQ + S D S+D+ G + + VE G+SLY +A + + +RI+E+N L
Sbjct 238 GQKLYIPSPDKSSDNRGEMGK--VIYFVEPGDSLYSIATKF------KTTVERIKEINAL 289
Query 150 QTPALAVGQTLIAP 163
+ +L VGQ L P
Sbjct 290 ASDSLYVGQKLFIP 303
>gi|323356741|ref|YP_004223137.1| hypothetical protein MTES_0293 [Microbacterium testaceum StLB037]
gi|323273112|dbj|BAJ73257.1| hypothetical protein MTES_0293 [Microbacterium testaceum StLB037]
Length=117
Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/86 (34%), Positives = 40/86 (47%), Gaps = 0/86 (0%)
Query 78 AITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTR 137
A + L +V G I GG A ++ G A + V +GE+L+ +A VAP A R
Sbjct 25 AFLVALPVVVALGLAIVGGGAALASGEGGAPSGSFAEITVMSGETLWSIAEDVAPQADPR 84
Query 138 QVADRIRELNGLQTPALAVGQTLIAP 163
V I LN L +A GQ + P
Sbjct 85 DVVAEISRLNALDGGVVAAGQRIAIP 110
>gi|227495847|ref|ZP_03926158.1| hypothetical protein HMPREF0058_0150 [Actinomyces urogenitalis
DSM 15434]
gi|226834604|gb|EEH66987.1| hypothetical protein HMPREF0058_0150 [Actinomyces urogenitalis
DSM 15434]
Length=263
Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/126 (33%), Positives = 58/126 (47%), Gaps = 11/126 (8%)
Query 38 SRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGS 97
+RP + R G+ + T SR PA L +LA A L LVA G +++G
Sbjct 147 ARPARVHAEHARVGLAQASTVQESRQAVPAALRRLVVLACAAVLGALLVA-GGIVLSGLI 205
Query 98 ADGSADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVG 157
++ A T V+ GESL+D+A + V +I ELN L++ L G
Sbjct 206 SEPVAGGT---------TTVQQGESLWDIASATGAQDVSAAV-SQIVELNNLESTTLQPG 255
Query 158 QTLIAP 163
QTLI P
Sbjct 256 QTLILP 261
>gi|296139523|ref|YP_003646766.1| peptidoglycan-binding lysin domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296027657|gb|ADG78427.1| Peptidoglycan-binding lysin domain protein [Tsukamurella paurometabola
DSM 20162]
Length=214
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/55 (39%), Positives = 30/55 (55%), Gaps = 0/55 (0%)
Query 109 PDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
P +VV V +G++L VA +AP P V D + +NGL + GQTL+ P
Sbjct 158 PALTSVVTVRSGQTLEQVAREIAPERPVASVVDEVSRINGLTDGRVRAGQTLVTP 212
>gi|326333211|ref|ZP_08199458.1| peptidoglycan-binding LysM [Nocardioidaceae bacterium Broad-1]
gi|325948855|gb|EGD40948.1| peptidoglycan-binding LysM [Nocardioidaceae bacterium Broad-1]
Length=125
Score = 40.4 bits (93), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/94 (31%), Positives = 48/94 (52%), Gaps = 6/94 (6%)
Query 72 LALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRVA 131
+ + A A+ + G +A G + DG+ S P +V V G++L+D++
Sbjct 33 IVVFAFALVVLFG-IALIGARVAFAVEDGADKSPA--PSAHTMV-VGDGDTLWDISAEAV 88
Query 132 P--NAPTRQVADRIRELNGLQTPALAVGQTLIAP 163
+A R++ RI+ELN L++ L GQTLI P
Sbjct 89 AGTDASIREMEQRIKELNSLESSMLVSGQTLIIP 122
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128736477480
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40