BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2722

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842260|ref|NP_337297.1|  hypothetical protein MT2794.1 [Myco...   169    1e-40
gi|15609859|ref|NP_217238.1|  hypothetical protein Rv2722 [Mycoba...   168    3e-40
gi|118465985|ref|YP_882793.1|  hypothetical protein MAV_3617 [Myc...  55.5    2e-06
gi|15827477|ref|NP_301740.1|  hypothetical protein ML1001 [Mycoba...  52.8    2e-05


>gi|15842260|ref|NP_337297.1| hypothetical protein MT2794.1 [Mycobacterium tuberculosis CDC1551]
 gi|167970055|ref|ZP_02552332.1| hypothetical protein MtubH3_19298 [Mycobacterium tuberculosis 
H37Ra]
 gi|13882552|gb|AAK47111.1| hypothetical protein MT2794.1 [Mycobacterium tuberculosis CDC1551]
Length=94

 Score =  169 bits (428),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA  60
           MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA
Sbjct  13  MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA  72

Query  61  VVSNRAAARAGFALPCRKRQPD  82
           VVSNRAAARAGFALPCRKRQPD
Sbjct  73  VVSNRAAARAGFALPCRKRQPD  94


>gi|15609859|ref|NP_217238.1| hypothetical protein Rv2722 [Mycobacterium tuberculosis H37Rv]
 gi|31793894|ref|NP_856387.1| hypothetical protein Mb2741 [Mycobacterium bovis AF2122/97]
 gi|121638597|ref|YP_978821.1| hypothetical protein BCG_2735 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 28 more sequence titles
 Length=82

 Score =  168 bits (425),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA  60
           MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA
Sbjct  1   MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA  60

Query  61  VVSNRAAARAGFALPCRKRQPD  82
           VVSNRAAARAGFALPCRKRQPD
Sbjct  61  VVSNRAAARAGFALPCRKRQPD  82


>gi|118465985|ref|YP_882793.1| hypothetical protein MAV_3617 [Mycobacterium avium 104]
 gi|118167272|gb|ABK68169.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=79

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 30/55 (55%), Positives = 36/55 (66%), Gaps = 0/55 (0%)

Query  16  GPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAAVVSNRAAARA  70
           GP   P C RARITLLQ T  AKSN ++Y+NGY  DV+ M GH  + + RA  RA
Sbjct  23  GPTHDPPCRRARITLLQPTRNAKSNYEFYKNGYRIDVEPMRGHVRIATRRAPGRA  77


>gi|15827477|ref|NP_301740.1| hypothetical protein ML1001 [Mycobacterium leprae TN]
 gi|221229954|ref|YP_002503370.1| hypothetical protein MLBr_01001 [Mycobacterium leprae Br4923]
 gi|13093027|emb|CAC31382.1| hypothetical protein [Mycobacterium leprae]
 gi|219933061|emb|CAR71096.1| hypothetical protein MLBr01001 [Mycobacterium leprae Br4923]
Length=91

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 29/74 (40%), Positives = 40/74 (55%), Gaps = 0/74 (0%)

Query  1   MPCLARQPVDLPPWAGPRCGPYCPRARITLLQRTTIAKSNRKYYENGYPADVKLMPGHAA  60
           MP     PV  P     +  PY   A+ITLLQ+T +AK N+KYY N Y  DV+++  H  
Sbjct  1   MPDPVVMPVPCPTSGFTQYSPYYRGAQITLLQQTILAKLNQKYYNNRYRVDVEMVLSHTG  60

Query  61  VVSNRAAARAGFAL  74
           V ++ AA+     L
Sbjct  61  VEADSAASHTILGL  74



Lambda     K      H
   0.323    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127967590486


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40