BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2726c Length=289 Score E Sequences producing significant alignments: (Bits) Value gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [... 570 8e-161 gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobact... 570 1e-160 gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [... 570 1e-160 gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopim... 569 1e-160 gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [... 568 3e-160 gi|342858407|ref|ZP_08715062.1| diaminopimelate epimerase [Mycob... 424 9e-117 gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF ... 424 1e-116 gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobac... 420 1e-115 gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobac... 414 6e-114 gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobact... 412 3e-113 gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycob... 403 2e-110 gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobact... 401 5e-110 gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobac... 400 8e-110 gi|336458913|gb|EGO37869.1| diaminopimelate epimerase [Mycobacte... 398 4e-109 gi|333991108|ref|YP_004523722.1| diaminopimelate epimerase DapF ... 398 5e-109 gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobac... 395 4e-108 gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycob... 390 2e-106 gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobac... 388 5e-106 gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobac... 386 2e-105 gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Myco... 385 4e-105 gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Myco... 382 4e-104 gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Myco... 379 3e-103 gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycob... 352 3e-95 gi|333919392|ref|YP_004492973.1| diaminopimelate epimerase [Amyc... 347 9e-94 gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodo... 347 1e-93 gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf ... 347 1e-93 gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhod... 337 1e-90 gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodo... 335 4e-90 gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycob... 329 4e-88 gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodoco... 321 8e-86 gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhod... 319 3e-85 gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia... 316 3e-84 gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordo... 308 4e-82 gi|343926998|ref|ZP_08766486.1| diaminopimelate epimerase [Gordo... 305 5e-81 gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gord... 296 3e-78 gi|305680693|ref|ZP_07403500.1| diaminopimelate epimerase [Coryn... 290 2e-76 gi|225021208|ref|ZP_03710400.1| hypothetical protein CORMATOL_01... 287 1e-75 gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Coryn... 281 1e-73 gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Coryn... 279 3e-73 gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Cory... 278 6e-73 gi|337290960|ref|YP_004629981.1| Diaminopimelate epimerase [Cory... 277 2e-72 gi|340794571|ref|YP_004760034.1| Diaminopimelate epimerase [Cory... 274 1e-71 gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Sacc... 273 2e-71 gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsuk... 273 3e-71 gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Coryn... 272 5e-71 gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Coryn... 268 5e-70 gi|227833311|ref|YP_002835018.1| Diaminopimelate epimerase [Cory... 267 2e-69 gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segni... 263 2e-68 gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Coryn... 263 2e-68 gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Strep... 262 4e-68 >gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] 20 more sequence titles Length=292 Score = 570 bits (1470), Expect = 8e-161, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL Sbjct 4 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 63 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV Sbjct 64 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 123 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA Sbjct 124 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 183 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA Sbjct 184 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 243 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG Sbjct 244 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 292 >gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv] gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97] 58 more sequence titles Length=289 Score = 570 bits (1468), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL Sbjct 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV Sbjct 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA Sbjct 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA Sbjct 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG Sbjct 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 >gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] Length=289 Score = 570 bits (1468), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 288/289 (99%), Positives = 289/289 (100%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL Sbjct 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV Sbjct 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA Sbjct 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA Sbjct 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 VGSPTGTLTVHVPGGEVVVT+TDATSFLRGPSVLVARGDLADDWWNAMG Sbjct 241 VGSPTGTLTVHVPGGEVVVTITDATSFLRGPSVLVARGDLADDWWNAMG 289 >gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Mycobacterium Tuberculosis Dapf Length=290 Score = 569 bits (1467), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL Sbjct 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 61 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV Sbjct 62 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 121 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA Sbjct 122 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 181 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA Sbjct 182 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 241 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG Sbjct 242 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 290 >gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] Length=292 Score = 568 bits (1465), Expect = 3e-160, Method: Compositional matrix adjust. Identities = 288/288 (100%), Positives = 288/288 (100%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL Sbjct 4 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 63 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV Sbjct 64 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 123 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA Sbjct 124 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 183 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA Sbjct 184 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 243 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM Sbjct 244 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 291 >gi|342858407|ref|ZP_08715062.1| diaminopimelate epimerase [Mycobacterium colombiense CECT 3035] gi|342134111|gb|EGT87291.1| diaminopimelate epimerase [Mycobacterium colombiense CECT 3035] Length=290 Score = 424 bits (1089), Expect = 9e-117, Method: Compositional matrix adjust. Identities = 235/288 (82%), Positives = 252/288 (88%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGTQNDFV+LPD AEL LT A VAALCDRR+GLGADGVLRVTTAGAA + GVL Sbjct 1 MHFAKGHGTQNDFVVLPDPQAELSLTGAGVAALCDRRRGLGADGVLRVTTAGAALSAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D +P+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASG+E RDEFVVGSLAGPRPV Sbjct 61 DRVPDGVDAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGMESRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H +A AD+SVDMGKAN LG G+AVVGGRRF GL+VDVGNPHLACVD QLT D LAA Sbjct 121 AVHRADATTADISVDMGKANTLGPGDAVVGGRRFSGLSVDVGNPHLACVDPQLTADALAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV APVSFD AQFPDGVNVE++TAP DGAV MRVHERGVGETRSCGTGTVAAAVAALA Sbjct 181 LDVAAPVSFDAAQFPDGVNVEIVTAPADGAVHMRVHERGVGETRSCGTGTVAAAVAALAG 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 GS TGTLTV VPGGEVVVT+TDATSFLRGPSVLVARG+L+++WW A Sbjct 241 SGSATGTLTVRVPGGEVVVTITDATSFLRGPSVLVARGELSEEWWRAQ 288 >gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] gi|229813234|sp|B2HL16.1|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] Length=290 Score = 424 bits (1089), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 227/286 (80%), Positives = 248/286 (87%), Gaps = 0/286 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDV A L LTAA+VAALCDRR+GLGADG+LRVTTA AA A GVL Sbjct 1 MIFAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 HRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T HH + +ADV+VDMGKAN+LG GEAVVGGRR G+AVDVGNPHLAC+D LT + LAA Sbjct 121 TVHHADQTHADVTVDMGKANKLGPGEAVVGGRRLSGVAVDVGNPHLACLDPGLTPEQLAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFD AQFP+GVNVEVLTAP G V MRVHERGVGETRSCGTGTVAAAVAALA+ Sbjct 181 LDVGAPVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGVGETRSCGTGTVAAAVAALAS 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 G TGTLTV +PGG+V V +TDATS LRGPSVLVA G+++++WW Sbjct 241 AGQETGTLTVRIPGGDVTVNITDATSLLRGPSVLVASGEISEEWWR 286 >gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99] gi|166225737|sp|A0PT80.1|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99] Length=290 Score = 420 bits (1079), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 226/286 (80%), Positives = 247/286 (87%), Gaps = 0/286 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFVLLPDV A L LTAA+VAALCDRR+GLGADG+LRVTTA AA A GVL Sbjct 1 MIFAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 HRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T HH + +ADV+VDMGKAN+LG GEAVVGGRR G+AVDVGNPHLAC+D LT + LAA Sbjct 121 TVHHADQTHADVTVDMGKANKLGPGEAVVGGRRLSGVAVDVGNPHLACLDPGLTPEQLAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDVGAPVSFD AQFP+GVNVEVLTA G V MRVHERGVGETRSCGTGTVAAAVAALA+ Sbjct 181 LDVGAPVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGVGETRSCGTGTVAAAVAALAS 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 G TGTLTV +PGG+V V +TDATS LRGPSVLVA G+++++WW Sbjct 241 AGQETGTLTVRIPGGDVTVNITDATSLLRGPSVLVASGEISEEWWR 286 >gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] gi|166225738|sp|A1T7U8.1|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] Length=289 Score = 414 bits (1065), Expect = 6e-114, Method: Compositional matrix adjust. Identities = 230/289 (80%), Positives = 249/289 (87%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGTQNDFVLLPD+ A+L LT A VAALCDRR+GLGADGVLRVTTAGAA+A GV Sbjct 1 MKFAKGHGTQNDFVLLPDLTADLALTPAAVAALCDRRQGLGADGVLRVTTAGAARAAGVF 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LPEGV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 DRLPEGVVEGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 + + ADV+V+MGKAN+LG G A VGGR+F+GLAVDVGNPHLACVD+ ++ LAA Sbjct 121 VLNALAGVGADVTVEMGKANQLGVGAATVGGRQFNGLAVDVGNPHLACVDAAMSSRELAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV APV FD AQFPDGVNVEVLTAP DGAV MRVHERGVGETRSCGTGTVAAAVAALA Sbjct 181 LDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGETRSCGTGTVAAAVAALAH 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 GS TG+LTV +PGGEVVVT+TDA S+LRGPSVLVA GDLAD+WW A G Sbjct 241 QGSQTGSLTVRIPGGEVVVTITDANSYLRGPSVLVAHGDLADEWWAAQG 289 >gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN] gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] gi|1169226|sp|P46814.1|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767117|sp|B8ZQU1.1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae] gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae] gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] Length=296 Score = 412 bits (1059), Expect = 3e-113, Method: Compositional matrix adjust. Identities = 222/292 (77%), Positives = 251/292 (86%), Gaps = 4/292 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGTQNDFV+LPDV+A++ TAA+VAALC+RR+GLGADGVLRVTTAGAA GVL Sbjct 1 MIFAKGHGTQNDFVVLPDVEADVTFTAAQVAALCNRRQGLGADGVLRVTTAGAAVTAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 + LP+GV +DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE DEFVVGSLAGPR V Sbjct 61 EHLPDGVSCSDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRLV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAG----EAVVGGRRFHGLAVDVGNPHLACVDSQLTVD 176 HHV+ ADV+VDMGKAN LG+G VGGRRF G+AVDVGNPHLAC+D QL+++ Sbjct 121 NVHHVDELNADVTVDMGKANLLGSGGPAFAVTVGGRRFSGVAVDVGNPHLACMDPQLSLE 180 Query 177 GLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVA 236 LAALD+GAPV D QFPDGVN+EVLTAPVDG V MRVHERGVGETRSCGTGTVAAAVA Sbjct 181 ELAALDLGAPVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVGETRSCGTGTVAAAVA 240 Query 237 ALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 ALA+ G+ TGTLTV VPGG+VV+T+TD TS+LRGPSVLVA G+LAD WW ++ Sbjct 241 ALASAGADTGTLTVRVPGGDVVITITDVTSYLRGPSVLVAHGELADAWWYSL 292 >gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478] Length=290 Score = 403 bits (1035), Expect = 2e-110, Method: Compositional matrix adjust. Identities = 231/288 (81%), Positives = 252/288 (88%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M+FAKGHGT+NDFVLLPD+ A+L L A++AALCDRR+GLGADGVLRVTTA AA A GVL Sbjct 1 MMFAKGHGTENDFVLLPDIKAQLSLGTAQIAALCDRRRGLGADGVLRVTTAEAAAAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 DRLPDGVGAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T H V+A+ ADV+VDMGKANR+G G AVVGGRRF GLAVDVGNPHLAC+D +LTV LAA Sbjct 121 TVHSVDASNADVTVDMGKANRIGTGTAVVGGRRFPGLAVDVGNPHLACLDPRLTVADLAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV APVSFD QFPDGVN+EVLTAPVDG V MRVHERGVGETRSCGTGTVAAAVAALA Sbjct 181 LDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGETRSCGTGTVAAAVAALAG 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G+ TGTLTV VPGG+V VTVTDATSFLRGPSVLVA G+++ +WW A Sbjct 241 AGAETGTLTVRVPGGDVAVTVTDATSFLRGPSVLVATGEVSGEWWRAQ 288 >gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571142|sp|Q73W21.1|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10] Length=294 Score = 401 bits (1031), Expect = 5e-110, Method: Compositional matrix adjust. Identities = 230/290 (80%), Positives = 246/290 (85%), Gaps = 4/290 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFVLL D AEL LT A VAALCDRR+GLGADGVLRVT A AA A GVL Sbjct 1 MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAG----EAVVGGRRFHGLAVDVGNPHLACVDSQLTVD 176 T H +A ADVSVDMGKAN LG G EA VGGRRF GLAVDVGNPHLAC+D +L+VD Sbjct 121 TVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAGLAVDVGNPHLACLDPELSVD 180 Query 177 GLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVA 236 LAALDV APVSFD AQFPDGVN+EVLTAP G V MRVHERGVGETRSCGTGTVAA VA Sbjct 181 ELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA 240 Query 237 ALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 ALAA G+ TGTLTV VPGG+VVVTVTDATS+LRGPSVLVA G+++++WW Sbjct 241 ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQ 290 >gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104] gi|166225731|sp|A0QIQ8.1|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104] Length=294 Score = 400 bits (1029), Expect = 8e-110, Method: Compositional matrix adjust. Identities = 233/290 (81%), Positives = 250/290 (87%), Gaps = 4/290 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFVLL D AEL LTAA VAALCDRR+GLGADGVLRVTTAGAA A GVL Sbjct 1 MKFAKGHGTENDFVLLCDTPAELRLTAAGVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LP+GV DWYMDYRN+DGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 DRLPDGVAGDDWYMDYRNSDGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAG----EAVVGGRRFHGLAVDVGNPHLACVDSQLTVD 176 T H +A ADVSVDMGKAN LG+G EA VGGRRF GLAVDVGNPHLAC+D +L+VD Sbjct 121 TVHAADATGADVSVDMGKANTLGSGGKAFEATVGGRRFAGLAVDVGNPHLACLDPELSVD 180 Query 177 GLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVA 236 LAALDV APVSFD AQFPDGVNVEVLTAP G V MRVHERGVGETRSCGTGTVAAAVA Sbjct 181 ELAALDVAAPVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAAVA 240 Query 237 ALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 AL A G+ TGTLTV VPGG+VVVTVTDATS+LRGPSVLVA G+++++WW Sbjct 241 ALTAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQ 290 >gi|336458913|gb|EGO37869.1| diaminopimelate epimerase [Mycobacterium avium subsp. paratuberculosis S397] Length=294 Score = 398 bits (1023), Expect = 4e-109, Method: Compositional matrix adjust. Identities = 229/290 (79%), Positives = 245/290 (85%), Gaps = 4/290 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFVLL D AEL L A VAALCDRR+GLGADGVLRVTTA AA A GVL Sbjct 1 MKFAKGHGTENDFVLLCDPPAELRLIGAGVAALCDRRRGLGADGVLRVTTAAAAAAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPV Sbjct 61 DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAG----EAVVGGRRFHGLAVDVGNPHLACVDSQLTVD 176 T H +A ADVSVDMGKAN LG G EA VGGR F GLAVDVGNPHLAC+D +L+VD Sbjct 121 TVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRLFAGLAVDVGNPHLACLDPELSVD 180 Query 177 GLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVA 236 LAALDV APVSFD AQFPDGVN+EVLTAP G V MRVHERGVGETRSCGTGTVAA VA Sbjct 181 ELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA 240 Query 237 ALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 ALAA G+ TGTLTV VPGG+VVVTVTDATS+LRGPSVLVA G+++++WW Sbjct 241 ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQ 290 >gi|333991108|ref|YP_004523722.1| diaminopimelate epimerase DapF [Mycobacterium sp. JDM601] gi|333487076|gb|AEF36468.1| diaminopimelate epimerase DapF [Mycobacterium sp. JDM601] Length=288 Score = 398 bits (1022), Expect = 5e-109, Method: Compositional matrix adjust. Identities = 223/288 (78%), Positives = 244/288 (85%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M+FAKGHGTQNDFV+LPD+ EL LTAA V+ALCDRR+GLGADGVLRVTTAGAA GVL Sbjct 1 MLFAKGHGTQNDFVVLPDLGVELDLTAAAVSALCDRRRGLGADGVLRVTTAGAAVTAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LPEGV DW+MDYRNADGS A+MCGNGVRVFAHYLRA+GLE DEFVVGSLAGPRP+ Sbjct 61 DQLPEGVSAGDWFMDYRNADGSVAEMCGNGVRVFAHYLRAAGLESADEFVVGSLAGPRPI 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T HH + A+V+VDMGKAN LG GEAVVGGRRF GLAVDVGNPHLACVD L+ LAA Sbjct 121 TVHHADDVRAEVTVDMGKANTLGPGEAVVGGRRFAGLAVDVGNPHLACVDPALSAAELAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV APVSFD QFP+GVNVEVLTA DGAV MRVHERGVGETRSCGTGTVAAAVAALA Sbjct 181 LDVAAPVSFDRGQFPNGVNVEVLTAARDGAVSMRVHERGVGETRSCGTGTVAAAVAALAD 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G+ TGTL V +PGG+V V VT+ATS+LRGPS LVARGD+A WW+A Sbjct 241 AGASTGTLRVDIPGGQVRVIVTEATSYLRGPSELVARGDIAAGWWSAQ 288 >gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] gi|166225733|sp|A0QVY0.1|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] Length=291 Score = 395 bits (1015), Expect = 4e-108, Method: Compositional matrix adjust. Identities = 223/291 (77%), Positives = 244/291 (84%), Gaps = 5/291 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 MIFAKGHGT+NDFV+LPD+DA L LT + VAALCDRR+GLGADGVLRVT AGAA+A GV Sbjct 1 MIFAKGHGTENDFVVLPDLDAALSLTPSAVAALCDRRRGLGADGVLRVTRAGAARAAGVF 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE DEFVVGSLAGPRPV Sbjct 61 DRLPDGVSAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESADEFVVGSLAGPRPV 120 Query 121 TCHHVE---AAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDG 177 H + A A+V+V+MGKAN+ GAG AVVGGR F GLAVDVGNPHLACV +T D Sbjct 121 VLHGFDPARATTAEVTVEMGKANQFGAGSAVVGGRSFDGLAVDVGNPHLACV--GITADD 178 Query 178 LAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAA 237 LAALDV APVSFD A FPDGVNVEVLTA VDGAV MRVHERGVGETRSCGTGTVAA VAA Sbjct 179 LAALDVAAPVSFDPALFPDGVNVEVLTASVDGAVSMRVHERGVGETRSCGTGTVAATVAA 238 Query 238 LAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 LA G+ TGTL V +PGGEV VTVT++TS+LRGPSVLVARG+L WW+A+ Sbjct 239 LAHDGADTGTLRVRIPGGEVTVTVTESTSYLRGPSVLVARGELDPHWWHAV 289 >gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950] Length=288 Score = 390 bits (1001), Expect = 2e-106, Method: Compositional matrix adjust. Identities = 230/285 (81%), Positives = 251/285 (89%), Gaps = 0/285 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGTQNDFV+LPD AEL LT +RVAALCDRR+GLGADGVLRVTTAGAA A GVL Sbjct 1 MKFAKGHGTQNDFVVLPDPAAELSLTGSRVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RD+FVVGSLAGPRPV Sbjct 61 DRLPDGVAADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLEDRDDFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 + H V+ AD+SVDMGKAN LG G+AV+GGRRF G+A+DVGNPHLACVD LTVD LAA Sbjct 121 SVHRVDGTTADISVDMGKANTLGPGDAVLGGRRFSGVAIDVGNPHLACVDPDLTVDALAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV APVSFD AQFPDGVNVE+LTAP GAV MRVHERGVGETRSCGTGTVAAAVAALA Sbjct 181 LDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGETRSCGTGTVAAAVAALAG 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWW 285 G+ TGTLTV VPGGEVVVT+TDATS+LRGPSVLVA G+++++WW Sbjct 241 TGADTGTLTVRVPGGEVVVTITDATSYLRGPSVLVAHGEISEEWW 285 >gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS] gi|166225734|sp|A3PYF9.1|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225735|sp|A1UEZ9.1|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS] Length=293 Score = 388 bits (997), Expect = 5e-106, Method: Compositional matrix adjust. Identities = 218/290 (76%), Positives = 238/290 (83%), Gaps = 3/290 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGTQNDFVLLPD+DA L LT A V+ALCDRR+GLGADGVLRVTTA AA + GV Sbjct 1 MQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 + LPEGV DWYMDYRNADGS AQMCGNGVRVFAHYLRA+ LE RDEFVVGSLAGPRPV Sbjct 61 ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 120 Query 121 TCHHVEAAY---ADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDG 177 H + A+ A+V+V+MGK N LG+G AVVGGRRF GL +DVGNPHLACVD+ LT Sbjct 121 VLHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGRRFTGLGIDVGNPHLACVDTTLTEAE 180 Query 178 LAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAA 237 LAALDV APV FD AQFPDGVNVEVLTA DGAV MRVHERGVGETRSCGTGTVAAAVAA Sbjct 181 LAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGETRSCGTGTVAAAVAA 240 Query 238 LAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNA 287 LA G+ GTL V +PGG V V+VTD TSFLRGPS LVA G+LA +WW + Sbjct 241 LAQEGAAVGTLDVRIPGGVVTVSVTDTTSFLRGPSELVATGELAGEWWQS 290 >gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS] gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS] Length=313 Score = 386 bits (991), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 217/288 (76%), Positives = 237/288 (83%), Gaps = 3/288 (1%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 FAKGHGTQNDFVLLPD+DA L LT A V+ALCDRR+GLGADGVLRVTTA AA + GV + Sbjct 23 FAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVFER 82 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LPEGV DWYMDYRNADGS AQMCGNGVRVFAHYLRA+ LE RDEFVVGSLAGPRPV Sbjct 83 LPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPVVL 142 Query 123 HHVEAAY---ADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLA 179 H + A+ A+V+V+MGK N LG+G AVVGGRRF GL +DVGNPHLACVD+ LT LA Sbjct 143 HGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGRRFTGLGIDVGNPHLACVDTTLTEAELA 202 Query 180 ALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALA 239 ALDV APV FD AQFPDGVNVEVLTA DGAV MRVHERGVGETRSCGTGTVAAAVAALA Sbjct 203 ALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGETRSCGTGTVAAAVAALA 262 Query 240 AVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNA 287 G+ GTL V +PGG V V+VTD TSFLRGPS LVA G+LA +WW + Sbjct 263 QEGAAVGTLDVRIPGGVVTVSVTDTTSFLRGPSELVATGELAGEWWQS 310 >gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977] gi|229813233|sp|B1MD00.1|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium abscessus] Length=295 Score = 385 bits (989), Expect = 4e-105, Method: Compositional matrix adjust. Identities = 198/292 (68%), Positives = 226/292 (78%), Gaps = 3/292 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F KGHGTQNDFV+LPDV + L+ A V ALCDR++GLGADGVLRVTT GAA GVL Sbjct 1 MKFTKGHGTQNDFVVLPDVHIKRDLSVAAVQALCDRQRGLGADGVLRVTTVGAALEGGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 P GV DW+MDYRNADGS A+MCGNGVRVFAHYLR+ GLE RDEFVV SLAGPRPV Sbjct 61 AEKPAGVSSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 + ADV+VDMG GAGEA+VGGRRF GLA+DVGNPHLACVD+ LT + L Sbjct 121 RINSWSQLTADVTVDMGPVKEFGAGEAIVGGRRFSGLAIDVGNPHLACVDAVLTTEQLRI 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDG---AVWMRVHERGVGETRSCGTGTVAAAVAA 237 LDVGAPV+FD FPDGVNVEVLTAP G V MRVHERGVGETRSCGTGTVAAA AA Sbjct 181 LDVGAPVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGVGETRSCGTGTVAAAYAA 240 Query 238 LAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 L +G TG + V++PGG+V VTVT +SFLRGPS+L+A G+++D+WW +G Sbjct 241 LRHIGQRTGEVVVNIPGGQVRVTVTGESSFLRGPSMLLADGEISDEWWGGIG 292 >gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] gi|189082836|sp|A4TCN3.1|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] Length=289 Score = 382 bits (980), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 214/288 (75%), Positives = 236/288 (82%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGTQNDFVLLPD++A+ LTA VAALCDRR+GLGADG+LRVTTAGAA A GV Sbjct 1 MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LPEGV DW+MDYRNADGS A+MCGNGVRVFAHYL A GLE R EFVVGSLAGPRPV Sbjct 61 DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + ADV+V+MGKA R G G A VGGRRF GLAVDVGNPHLACVD +LT GLA+ Sbjct 121 VLHEADDTTADVTVEMGKAVRCGTGTATVGGRRFSGLAVDVGNPHLACVDEELTDAGLAS 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV +PV+FD QFP GVNVE+LTAP DGAV MRVHERGVGETRSCGTGTVAAAVAAL Sbjct 181 LDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSCGTGTVAAAVAALDH 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G+ TGTL V +PGGEV VTVT+ S+LRGPSVL+A G+LA+ WW A Sbjct 241 QGARTGTLRVRIPGGEVCVTVTETDSYLRGPSVLLAHGELAEQWWAAQ 288 >gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] Length=289 Score = 379 bits (973), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 213/288 (74%), Positives = 235/288 (82%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGTQNDFVLLPD++A+ LTA VAALCDRR+GLGADG+LRVTTAGAA A GV Sbjct 1 MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D LPEGV DW+MDYRNADGS A+MCGNGVRVFAHYL A GLE R EFVVGSLAGPRPV Sbjct 61 DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + ADV+V+MGKA R G G A VGGR F GLAVDVGNPHLACVD +LT GLA+ Sbjct 121 VLHEADDTTADVTVEMGKAVRCGTGTATVGGRTFSGLAVDVGNPHLACVDEELTDAGLAS 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LDV +PV+FD QFP GVNVE+LTAP DGAV MRVHERGVGETRSCGTGTVAAAVAAL Sbjct 181 LDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSCGTGTVAAAVAALDH 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G+ TGTL V +PGGEV VTVT+ S+LRGPSVL+A G+LA+ WW A Sbjct 241 EGAHTGTLRVRIPGGEVCVTVTETDSYLRGPSVLLAHGELAEQWWAAQ 288 >gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=255 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 198/254 (78%), Positives = 215/254 (85%), Gaps = 4/254 (1%) Query 40 LGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLR 99 +GADGVLRVTTAGAA + GVLD LP+GV DWYMDYRNADGS AQMCGNGVRVFAHYLR Sbjct 1 MGADGVLRVTTAGAALSAGVLDRLPDGVAPGDWYMDYRNADGSIAQMCGNGVRVFAHYLR 60 Query 100 ASGLEVRDEFVVGSLAGPRPVTCHHVEAAYADVSVDMGKANRLGAG----EAVVGGRRFH 155 ASG+E RDEFVV S AGPRPVT H +A AD++VDMGKAN LG+G EA VGGRRF Sbjct 61 ASGMEGRDEFVVASAAGPRPVTVHRADATRADITVDMGKANTLGSGGPAFEATVGGRRFA 120 Query 156 GLAVDVGNPHLACVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRV 215 GL VDVGNPHLACVD LT D LA LDV APVSFD AQFP+GVN+EVLTAP DGAV MRV Sbjct 121 GLGVDVGNPHLACVDPALTADDLAGLDVAAPVSFDHAQFPEGVNIEVLTAPADGAVRMRV 180 Query 216 HERGVGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLV 275 HERGVGETRSCGTGTVAAAVAALAA G+ TGTL V VPGGEVVVTVTDATS+LRGPSVLV Sbjct 181 HERGVGETRSCGTGTVAAAVAALAAAGTDTGTLAVRVPGGEVVVTVTDATSYLRGPSVLV 240 Query 276 ARGDLADDWWNAMG 289 A G+++ +WW+A G Sbjct 241 AHGEVSGEWWDAQG 254 >gi|333919392|ref|YP_004492973.1| diaminopimelate epimerase [Amycolicicoccus subflavus DQS3-9A1] gi|333481613|gb|AEF40173.1| Diaminopimelate epimerase [Amycolicicoccus subflavus DQS3-9A1] Length=312 Score = 347 bits (891), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 183/287 (64%), Positives = 210/287 (74%), Gaps = 1/287 (0%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGT+NDF++L D D L LT +R AALCDR++GLGADGVLRV AG VL Sbjct 12 FTKGHGTENDFIILRDTDVRLDLTVSRTAALCDRQRGLGADGVLRVARAGDLAEKRVLSH 71 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LP GV DW+MDYRNADGS A+MCGNGVRVFAHYLR SGLE R EF VGS AG RPVT Sbjct 72 LPAGVAPDDWFMDYRNADGSIAEMCGNGVRVFAHYLRTSGLETRAEFTVGSRAGARPVTV 131 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H +V+V+MG LG EA +GGR F GL +DVGNPHLACVD LT + L LD Sbjct 132 HQAGPYLGEVTVEMGPVTSLGQSEATLGGRTFTGLGIDVGNPHLACVDDTLTAESLKQLD 191 Query 183 VGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVG 242 V PV FD + FP GVN+E+LTA G V MRV+ERGVGETRSCGTGTVAAA AALAA G Sbjct 192 VSEPV-FDKSFFPRGVNIEILTALRHGVVEMRVNERGVGETRSCGTGTVAAAAAALAATG 250 Query 243 SPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 TG++ V +PGGEV VT+T +SFLRGPSVLVA G++A WW+ +G Sbjct 251 ESTGSVVVRIPGGEVTVTITAESSFLRGPSVLVASGEIAGQWWDVVG 297 >gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] Length=289 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 190/289 (66%), Positives = 218/289 (76%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F+KGHGT+NDFV+LPD DA+L L A RVAALCDRR+GLGADG+LRV AGA AVGVL Sbjct 1 MEFSKGHGTENDFVILPDPDADLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 LPEGV DW+MDYRN DGS A++CGNGVRVFAHYLRA+GLE+RDEFVVGS AG RPV Sbjct 61 PELPEGVGADDWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + + DV+VDMG+ LG A VGGR G+ +DVGNPHLACVD LT LA+ Sbjct 121 HVHSADHVHGDVTVDMGRVRELGTSTATVGGRVLEGIGIDVGNPHLACVDPDLTPASLAS 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LD+ A FD FP+GVN+E+LTA VDGAV MRVHERGVGETRSCGTGTVAAAVAAL A Sbjct 181 LDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSCGTGTVAAAVAALRA 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 G G + V VPGG V V+V + LRGPS+LVA G + D WW +G Sbjct 241 HGDADGKVEVRVPGGRVEVSVDGGRAALRGPSMLVAAGRIDDRWWTELG 289 >gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S] gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S] Length=289 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 190/289 (66%), Positives = 217/289 (76%), Gaps = 0/289 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F+KGHGT+NDFV+LPD D +L L A RVAALCDRR+GLGADG+LRV AGA AVGVL Sbjct 1 MEFSKGHGTENDFVILPDPDVDLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 LPEGV DW+MDYRN DGS A+MCGNGVRVFAHYLRA+GLE+RDEFVVGS AG RPV Sbjct 61 PELPEGVGADDWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + + DV+VDMG+ LG A VGGR G+ +DVGNPHLACVD LT LA+ Sbjct 121 HVHSADHVHGDVTVDMGRVRELGTSTATVGGRVLEGIGIDVGNPHLACVDPDLTPASLAS 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LD+ A FD FP+GVN+E+LTA VDGAV MRVHERGVGETRSCGTGTVAAAVAAL A Sbjct 181 LDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSCGTGTVAAAVAALRA 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 G G + V VPGG V V+V + LRGPS+LVA G + D WW +G Sbjct 241 HGDADGKVEVRVPGGRVEVSVDGGRAALRGPSMLVAAGRIDDRWWTELG 289 >gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] gi|259595060|sp|C0ZYN8.1|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] Length=292 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 176/288 (62%), Positives = 210/288 (73%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F+KGHGTQNDFV+LPD+D + L ARV+ALCDR++GLGADG+LRV AGA GVL Sbjct 4 MDFSKGHGTQNDFVVLPDLDVRVDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL 63 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 +LP+GV DW+MDYRN+DGS A+MCGNGVRVFAHYL+ASGLE +DEFVVGS AG RPV Sbjct 64 GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV 123 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H +A + DV+V MG LG A + GR F G+ +DVGNPHLACVD +T + L+A Sbjct 124 VVHGYDATHGDVTVAMGPIKDLGTSSATIDGRVFAGVGIDVGNPHLACVDEHVTAEVLSA 183 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LD+ FD FP GVN+E++T DG V MRVHERGVGETRSCGTGTVAAA AAL Sbjct 184 LDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCGTGTVAAAAAALKF 243 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G G++ V V GGEV VTV LRGPSVLVA G ++D WW ++ Sbjct 244 DGRDEGSVLVRVLGGEVQVTVEGGEGSLRGPSVLVANGTISDAWWQSL 291 >gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] Length=289 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 175/288 (61%), Positives = 210/288 (73%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F+KGHGTQNDFV+LPD+D + L ARV+ALCDR++GLGADG+LRV AGA GVL Sbjct 1 MDFSKGHGTQNDFVVLPDLDVRIDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 +LP+GV DW+MDYRN+DGS A+MCGNGVRVFAHYL+ASGLE +DEFVVGS AG RPV Sbjct 61 GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H +A + DV+V MG LG A + GR F G+ +DVGNPHLACVD +T + L++ Sbjct 121 VVHGYDATHGDVTVAMGTIKDLGTSSATIDGRVFAGVGIDVGNPHLACVDEHVTPEVLSS 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LD+ FD FP GVN+E++T DG V MRVHERGVGETRSCGTGTVAAA AAL Sbjct 181 LDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCGTGTVAAAAAALRY 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G G++ V V GGEV VTV LRGPSVLVA G ++D WW ++ Sbjct 241 DGRDEGSVLVRVLGGEVQVTVEGGKGSLRGPSVLVASGTISDAWWQSL 288 >gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC 25291] Length=231 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 182/227 (81%), Positives = 196/227 (87%), Gaps = 4/227 (1%) Query 64 PEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCH 123 P+GV DWYMDYRNADGS AQMCGNGVRVFAHYLRASGLE RDEFVVGSLAGPRPVT H Sbjct 1 PDGVAAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVH 60 Query 124 HVEAAYADVSVDMGKANRLGAG----EAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLA 179 +A ADVSVDMGKAN LG+G EA VGGRRF GLAVDVGNPHLAC+D +L+VD LA Sbjct 61 AADATGADVSVDMGKANTLGSGGKAFEATVGGRRFAGLAVDVGNPHLACLDPELSVDELA 120 Query 180 ALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALA 239 ALDV APVSFD AQFPDGVNVEVLTAP G V MRVHERGVGETRSCGTGTVAAAVAAL Sbjct 121 ALDVAAPVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAAVAALT 180 Query 240 AVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 A G+ TGTLTV VPGG+VVVTVTDATS+LRGPSVLVA G+++++WW Sbjct 181 AAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQ 227 >gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] gi|122955072|sp|Q0S1N7.1|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] Length=289 Score = 321 bits (823), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 180/288 (63%), Positives = 213/288 (74%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F+KGHGT+NDFV+LPD D + L+A RVAALCDRR+GLGADG+LRV AGA GVL Sbjct 1 MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAGAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 LP+G DW+MDYRNADGS A+MCGNGVRVFAHYLRA+GLE RDEFVVGS AG +PV Sbjct 61 AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRAAGLESRDEFVVGSRAGGKPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + A+ +V+VDMG LG A + G+ F+G+ +DVGNPHLACVD+ LT L+A Sbjct 121 IVHSADGAFGEVTVDMGVVRDLGTSAATIDGKVFNGIGIDVGNPHLACVDAHLTAASLSA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LD+ A FD FP GVNVE+LT GAV MRVHERGVGETRSCGTGTVAAA AAL Sbjct 181 LDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSCGTGTVAAATAALRF 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G+ +G + V +PGG+V V V+ + LRGPSVLVA G L D WWN + Sbjct 241 DGADSGEVNVRIPGGQVTVAVSGGRATLRGPSVLVASGTLDDGWWNGL 288 >gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4] gi|254767119|sp|C1B393.1|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4] Length=289 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/288 (62%), Positives = 214/288 (75%), Gaps = 0/288 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M F+KGHGT+NDFV+LPD D + L+A RVAALCDRR+GLGADG+LRV AGA A GVL Sbjct 1 MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAAAGVL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 LP+G DW+MDYRNADGS A+MCGNGVRVFAHYLR++GLE RDEFVVGS AG +PV Sbjct 61 AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRSTGLETRDEFVVGSRAGGKPV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + + +V+VDMG LG A + G+ F+G+ +DVGNPHLACVD+ LT L+A Sbjct 121 IVHSADGSAGEVTVDMGVVRDLGTSAATIDGKVFNGIGIDVGNPHLACVDAHLTAASLSA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 LD+ A FD FP GVNVE+LT GAV MRVHERGVGETRSCGTGTVAAA AAL Sbjct 181 LDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSCGTGTVAAATAALRF 240 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAM 288 G+ +G + V +PGG+V V ++ + LRGPSVLVA G+L D WWN + Sbjct 241 DGADSGEVKVRIPGGQVTVALSGGRATLRGPSVLVASGNLDDSWWNGL 288 >gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152] gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152] Length=302 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 180/293 (62%), Positives = 209/293 (72%), Gaps = 7/293 (2%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGT+NDFV+LPD D L LT ARVAALCDR++GLGADGVLRV AGA GVLD+ Sbjct 11 FTKGHGTENDFVVLPDEDVRLDLTPARVAALCDRQRGLGADGVLRVARAGALLRAGVLDA 70 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LP GV TDW+MDYRNADGS A+MCGNGVRVFAHYL A+G E VVGS AG RPVT Sbjct 71 LPAGVSDTDWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPVTV 130 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H + +V+V MG+ LGA A V G + GL +DVGNPHLACVD LT + LA LD Sbjct 131 HAAGPTHGEVTVAMGEVRALGASTATVAGWGYSGLGIDVGNPHLACVDPTLTAEALAKLD 190 Query 183 VGAPVSFDGAQFPDGVNVEVLTAPVDG--AVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 + +D FP GVNVE+LT P+D AV MRV+ERGVGETRSCGTGTVAAA AAL+A Sbjct 191 LTVSPGYDPDLFPHGVNVEILT-PLDEQRAVDMRVYERGVGETRSCGTGTVAAAAAALSA 249 Query 241 VG----SPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 G + +G +TV VPGG V V + +++LRGPSVLVA G L DWW +G Sbjct 250 EGFELATGSGAVTVRVPGGAVRVGLEAGSAWLRGPSVLVATGRLTADWWQTLG 302 >gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] Length=300 Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 174/292 (60%), Positives = 200/292 (69%), Gaps = 8/292 (2%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 + F KGHGTQNDFV+LPD A++ LT AALCDR++GLGADGVLRV TAG+ A GVL Sbjct 7 LAFVKGHGTQNDFVILPDRQAQIELTEELTAALCDRQRGLGADGVLRVATAGSLVAEGVL 66 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 + LP+GV DW+MDYRNADGS A+MCGNGVRVFAH+ RA GL DEF VGS AG RPV Sbjct 67 ERLPDGVSGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGARPV 126 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 H + A+VSV MG GAG + GR G AVDVGNPHLACV LTV LA Sbjct 127 RIHSADETDAEVSVSMGPVVLEGAGRVGIAGRTLTGEAVDVGNPHLACVVDGLTVADLAG 186 Query 181 LDVGAPVSFDGAQFPDGVNVEV---LTAPVDGA-----VWMRVHERGVGETRSCGTGTVA 232 LD+ D AQFP G NVE+ LTA DG MRV ERGVGETRSCGTG VA Sbjct 187 LDLTTGAELDAAQFPHGANVEILTPLTAASDGGSADFHAHMRVFERGVGETRSCGTGLVA 246 Query 233 AAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDW 284 AA AAL+ G +G + + VPGG+V+VTV D ++ LRGPS LVARG+L W Sbjct 247 AAAAALSGAGRESGAVAITVPGGDVLVTVADGSAVLRGPSRLVARGELLAGW 298 >gi|343926998|ref|ZP_08766486.1| diaminopimelate epimerase [Gordonia alkanivorans NBRC 16433] gi|343763056|dbj|GAA13412.1| diaminopimelate epimerase [Gordonia alkanivorans NBRC 16433] Length=300 Score = 305 bits (781), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 169/287 (59%), Positives = 200/287 (70%), Gaps = 5/287 (1%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGTQNDFV+L D AEL L A VAALCDR++G+GADG+LRV GA GVLD+ Sbjct 12 FVKGHGTQNDFVVLADPAAELSLDAEMVAALCDRQRGIGADGLLRVARTGALVERGVLDA 71 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LP+GV DW+MDYRN DGS A+MCGNGVRVFAH++RA+GL D F VGS AG RPVT Sbjct 72 LPDGVAADDWFMDYRNGDGSIAEMCGNGVRVFAHFVRATGLTDTDTFTVGSRAGARPVTI 131 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H + +A+V+V+MG A G +G + G+ VDVGNPHLACV + LT DGLAA+D Sbjct 132 HSFDDVHAEVTVEMGVARLDGTSVVRIGDDIYPGVKVDVGNPHLACVVADLTADGLAAVD 191 Query 183 VGAPVSFDGAQFPDGVNVEVLTAP---VDGAVW--MRVHERGVGETRSCGTGTVAAAVAA 237 A V + FP+G NVE+LT P VDG ++ MRV ERGVGETRSCGTG VAA AA Sbjct 192 FTAGVVIEADDFPNGANVELLTPPVEDVDGRLYARMRVFERGVGETRSCGTGLVAATRAA 251 Query 238 LAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDW 284 L A G TG L + +PGGEV VT+ S LRGPS+LVA G L W Sbjct 252 LDARGQDTGELRIGIPGGEVTVTIRTDGSTLRGPSMLVADGVLRPGW 298 >gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] Length=302 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 173/292 (60%), Positives = 201/292 (69%), Gaps = 5/292 (1%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGTQNDFV+L D A+L + A+ VAALCDR +G+GADG+LRV AGA A GVL+ Sbjct 9 FVKGHGTQNDFVILADPAADLDIDASLVAALCDRPRGIGADGLLRVARAGALVAAGVLEM 68 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LP+GV DW+MDYRNADGS A+MCGNGVRVFAH+LRA GL DEF VGS AG RPVT Sbjct 69 LPDGVAPDDWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGGRPVTV 128 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H +A ADV+V+MG+A +G + G VDVGNPHLACV L VD LAA+D Sbjct 129 HSHDALSADVTVEMGQATVDFDAAVRIGDDLYVGTKVDVGNPHLACVVGDLDVDELAAVD 188 Query 183 VGAPVSFDGAQFPDGVNVEVLTAPV---DGAV--WMRVHERGVGETRSCGTGTVAAAVAA 237 A V + A FP G NVE+LT P DG + MRV ERGVGETRSCGTG VAAA AA Sbjct 189 FTAGVRLEAADFPHGANVELLTRPAVADDGVLTAHMRVFERGVGETRSCGTGLVAAAAAA 248 Query 238 LAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 A G P G L +HVPGG V+VT+ + LRGPS+LVA G+L D W G Sbjct 249 FAGRGEPGGDLRIHVPGGTVLVTIAATGTRLRGPSMLVAEGELRDGWCGGPG 300 >gi|305680693|ref|ZP_07403500.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266] gi|305658898|gb|EFM48398.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266] Length=305 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/285 (57%), Positives = 196/285 (69%), Gaps = 8/285 (2%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGTQNDF++LPD +A+L LT +A LCDR++G+GADG+LRV T GA + G+L + Sbjct 16 FTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAGLLTN 75 Query 63 LP---EGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRP 119 P E + DW+MDY NADGS A+MCGNG RVFAHY+R+ GL D+F +G+ AG +P Sbjct 76 NPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRAGAKP 135 Query 120 VTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLA 179 VT H + A VSV MG A LG +GGR + G+ VD+GNPHLACV LT + LA Sbjct 136 VTVHSFDDDNAVVSVAMGPATSLGESTCSMGGRMYAGMGVDMGNPHLACVVPGLTAEALA 195 Query 180 ALDVGAPVSFDGAQFPDGVNVEVLT----APVDGAVWMRVHERGVGETRSCGTGTVAAAV 235 L + P FD FP+GVNVEVLT +P MRV+ERGVGETRSCGTGTVAAA Sbjct 196 DLTLDRP-EFDAEFFPEGVNVEVLTELAHSPEGYRTHMRVYERGVGETRSCGTGTVAAAR 254 Query 236 AALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDL 280 AALA G GT+ V +PGG+V VT+ TS LRGPS LVA G+L Sbjct 255 AALAYAGFVNGTVMVQIPGGQVEVTIDGDTSTLRGPSALVATGEL 299 >gi|225021208|ref|ZP_03710400.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii ATCC 33806] gi|224945941|gb|EEG27150.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii ATCC 33806] Length=307 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/285 (56%), Positives = 195/285 (69%), Gaps = 8/285 (2%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGTQNDF++LPD +A+L LT +A LCDR++G+GADG+LRV T GA + G+L + Sbjct 18 FTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAGLLTN 77 Query 63 LP---EGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRP 119 P E + DW+MDY NADGS A+MCGNG RVFAHY+R+ GL D+F +G+ AG +P Sbjct 78 NPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRAGAKP 137 Query 120 VTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLA 179 V H + A VSV MG A LG +GGR + G+ VD+GNPHLACV LT + LA Sbjct 138 VIVHSFDDDNAVVSVAMGPATSLGESTCSMGGRMYAGMGVDMGNPHLACVVPGLTAEALA 197 Query 180 ALDVGAPVSFDGAQFPDGVNVEVLT----APVDGAVWMRVHERGVGETRSCGTGTVAAAV 235 L + P FD FP+GVNVEVLT +P MRV+ERGVGETRSCGTGTVAAA Sbjct 198 DLTLDRP-EFDTEFFPEGVNVEVLTELVHSPEGYRTHMRVYERGVGETRSCGTGTVAAAR 256 Query 236 AALAAVGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDL 280 AALA G GT+ V +PGG+V VT+ TS LRGPS LVA G+L Sbjct 257 AALAYAGFVNGTVMVQIPGGQVEVTIDGDTSTLRGPSALVATGEL 301 >gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] Length=281 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/281 (57%), Positives = 193/281 (69%), Gaps = 1/281 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFV++ D DAE L+ RVAALCDRR G+G DG+LRV AGA G L Sbjct 1 MKFAKGHGTENDFVIVEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 +LP+GV DW+MDYRNADGS A+MCGNG RVFAH+LR+ L D F +G+ AG + V Sbjct 61 AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T H +A A V+V+MG A G A VGG + GL VD+GNPHLA V L + LAA Sbjct 121 TVHSCDATAASVTVEMGPARVTGVSTASVGGESYAGLGVDMGNPHLAAVIPGLEPEALAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 D+ APV +D + FP GVN E++T +G V MRV ERGVGET+SCGTGTVAAA AALA Sbjct 181 KDLTAPV-YDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGTGTVAAATAALAD 239 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLA 281 GT+ VHVPGGEV V V D + L GPS +VA G+ + Sbjct 240 AAQALGTVHVHVPGGEVTVEVYDGGTRLTGPSAIVATGETS 280 >gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] Length=281 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 159/281 (57%), Positives = 191/281 (68%), Gaps = 1/281 (0%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFV++ D DAE L+ RVAALCDRR G+G DG+LRV AGA G L Sbjct 1 MKFAKGHGTENDFVIIEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 +LP+GV DW+MDYRNADGS A+MCGNG RVFAH+LR+ L D F +G+ AG + V Sbjct 61 AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T H A A V+V+MG A G A V G + GL VD+GNPHLA V L + LAA Sbjct 121 TVHSCNATAASVTVEMGPARVTGVSTASVAGESYAGLGVDMGNPHLAAVIPGLEPEALAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 D+ APV +D + FP GVN E++T +G V MRV ERGVGET+SCGTGTVAAA AALA Sbjct 181 KDLTAPV-YDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGTGTVAAATAALAD 239 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLA 281 GT+ VHVPGGEV V V D + L GPS +VA G+ + Sbjct 240 AAQALGTVHVHVPGGEVTVEVYDGGTRLTGPSAIVATGETS 280 >gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231] gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002] gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19] gi|341825057|gb|AEK92578.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis PAT10] Length=297 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 157/279 (57%), Positives = 193/279 (70%), Gaps = 2/279 (0%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 FAKGHGT+NDFV++ D+DA+L LT ++A+CDRR G+GADGVLRV G+ A GVL Sbjct 13 FAKGHGTENDFVIIEDLDAKLPLTPQLISAICDRRAGVGADGVLRVAHVGSLLASGVLTQ 72 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 PEG+ +D++MDY NADGSAA+MCGNG RVFAH+LR+ L D+F +G+ AG R V+ Sbjct 73 APEGLDPSDYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTVSV 132 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H A ADVSVDMG A G +G + G+ VD+GNPHLACV LT LA +D Sbjct 133 HAFSATDADVSVDMGPAEVTGVSTCRIGTASYAGMGVDMGNPHLACVVPGLTPQALAEVD 192 Query 183 VGAPVSFDGAQFPDGVNVEVLTA-PVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAV 241 + PV DG FP+GVNVE+LT + MRV+ERGVGETRSCGTGTVAAA +ALA Sbjct 193 LVQPV-VDGEFFPEGVNVELLTELDQQSQIHMRVYERGVGETRSCGTGTVAAARSALADA 251 Query 242 GSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDL 280 G G + VH+PGG V VT+ TS LRGPS +VA G L Sbjct 252 GLVDGHVVVHIPGGSVSVTIQGDTSVLRGPSKIVAWGQL 290 >gi|337290960|ref|YP_004629981.1| Diaminopimelate epimerase [Corynebacterium ulcerans BR-AD22] gi|334697074|gb|AEG81871.1| Diaminopimelate epimerase [Corynebacterium ulcerans 809] gi|334699266|gb|AEG84062.1| Diaminopimelate epimerase [Corynebacterium ulcerans BR-AD22] Length=297 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 156/279 (56%), Positives = 192/279 (69%), Gaps = 2/279 (0%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 FAKGHGT+NDFV++ D+DA+L LT ++A+CDRR G+GADGVLRV GA A GVL Sbjct 13 FAKGHGTENDFVIIEDLDAKLPLTPQLISAMCDRRAGVGADGVLRVARVGALLASGVLTQ 72 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 PEG+ +D++MDY NADGSAA+MCGNG RVFAH+LR+ L D+F +G+ AG R V+ Sbjct 73 APEGLDPSDYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDADDFSIGTRAGVRTVSV 132 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H A ADVSVDMG A G +G + G+ VD+GNPHLACV LT L+ +D Sbjct 133 HSFSATDADVSVDMGSAEVTGVSTCHIGTASYAGMGVDMGNPHLACVVPGLTPQALSEVD 192 Query 183 VGAPVSFDGAQFPDGVNVEVLTA-PVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAV 241 + PV D FP+GVNVE+LT + MRV+ERGVGETRSCGTGTVAAA +ALA Sbjct 193 LVQPV-VDSEFFPEGVNVELLTELDHQSQIHMRVYERGVGETRSCGTGTVAAARSALADA 251 Query 242 GSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDL 280 G G + VH+PGG V VT+ TS LRGPS +VA G L Sbjct 252 GLVDGHVVVHIPGGSVSVTIQGDTSVLRGPSKIVAWGQL 290 >gi|340794571|ref|YP_004760034.1| Diaminopimelate epimerase [Corynebacterium variabile DSM 44702] gi|340534481|gb|AEK36961.1| Diaminopimelate epimerase [Corynebacterium variabile DSM 44702] Length=292 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 159/276 (58%), Positives = 188/276 (69%), Gaps = 0/276 (0%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGT NDFV+LPD ++ LT V L DR +G+G DGV+R+ T GA GV+D Sbjct 6 FLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAGVIDE 65 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 PEGV DW+MDYRNADGS A+MCGNGVRVF H L GL + V+G+ AG R +T Sbjct 66 APEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRRELTV 125 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H V ADVSVDMG LG A + G +HG VD+GNPHLACV L+ + LA L Sbjct 126 HAVAGTTADVSVDMGAPVVLGESSATLAGETYHGTGVDMGNPHLACVVPGLSPEKLATLP 185 Query 183 VGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVG 242 VG +D A FP GVN+E++TAPVDG V MRVHERGVGET SCGTGTVAAAVAAL + G Sbjct 186 VGLLPEWDPAFFPAGVNLELVTAPVDGVVHMRVHERGVGETLSCGTGTVAAAVAALRSTG 245 Query 243 SPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARG 278 TG + V +PGGEV VTV+ +S LRGPS L+ RG Sbjct 246 EETGQVRVRIPGGEVQVTVSSESSELRGPSQLLFRG 281 >gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] Length=286 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 161/285 (57%), Positives = 187/285 (66%), Gaps = 14/285 (4%) Query 2 IFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLD 61 +F KGHGT+NDFV+LPD D EL LT +RV ALCDRR+GLGADGVLRV A L+ Sbjct 14 LFLKGHGTENDFVILPDPDGELKLTDSRVQALCDRRRGLGADGVLRVVRTAA------LE 67 Query 62 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVT 121 P+ V W+MDYRNADGS A+MCGNGVRVFA+YL +GL E VG+ AG RPV Sbjct 68 DAPDSVPGDVWFMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPV- 126 Query 122 CHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAAL 181 V A V+VDMG A G VG F G+AVD+GNPHLACV ++ +DGL Sbjct 127 ---VTRADGRVTVDMGPAALFGRSRTAVGKENFPGVAVDLGNPHLACV-TEADLDGL--- 179 Query 182 DVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAV 241 D+ + FD FP GVN+E + G V MRV+ERGVGETRSCGTGTVAA VAAL A Sbjct 180 DLSSQPPFDPQVFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAALDAD 239 Query 242 GSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWN 286 G+ TG V VPGG V V VT+ TS L GP+VLVA G L WW Sbjct 240 GATTGHRIVDVPGGTVEVEVTEQTSTLTGPAVLVAAGRLDALWWE 284 >gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] Length=290 Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 173/276 (63%), Positives = 192/276 (70%), Gaps = 0/276 (0%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGT+NDFV+LPD ++ LT VAALCDRR G+GADGVLR+ AG GVLD+ Sbjct 6 FLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVLDA 65 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LP GV DW+MDYRN+DGS A+MCGNGVRVFAH L AS L EFVVGS AG RPV Sbjct 66 LPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASSLVPGPEFVVGSRAGGRPVVV 125 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 HH + ADVSV MG A G+ A V GR G+AVDVGNPHLACV LT L LD Sbjct 126 HHADPEAADVSVAMGPATVFGSSSAGVDGRDLAGIAVDVGNPHLACVVPGLTAADLGGLD 185 Query 183 VGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVG 242 V +P SFD FP G NVEV+T VDGAV MRVHERG GETRSCGTGTVAAAVAAL + Sbjct 186 VASPPSFDHGLFPHGTNVEVITPLVDGAVHMRVHERGSGETRSCGTGTVAAAVAALRSDD 245 Query 243 SPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARG 278 G + VHVPGG V VTV + LRGPS +VA G Sbjct 246 RQEGVVGVHVPGGTVTVTVAPDGAVLRGPSRIVATG 281 >gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] Length=286 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 160/286 (56%), Positives = 192/286 (68%), Gaps = 6/286 (2%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFV++ D A L RVAALCDRR G+G DG+LRV A A A G + Sbjct 1 MKFAKGHGTENDFVIVEDHAAATPLAPERVAALCDRRAGIGGDGLLRVVRAEALLAAGEI 60 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 ++L EG+ TDW+MDYRNADGS A+MCGNG RVFAH+LR+ GL DEF +G+ AG + V Sbjct 61 EALAEGIAPTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRV 120 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T H + A+V+V+MG A G A + G + GL VD+GNPHLA V L +GLAA Sbjct 121 TVHSCDEQAAEVTVEMGPAEVTGVSTASMAGESYAGLGVDMGNPHLAAVVPGLDAEGLAA 180 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 PV D A FP GVNVEV+T DG V MRV ERGVGETRSCGTGTVAAA AALA Sbjct 181 KTFEQPV-IDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETRSCGTGTVAAATAALAD 239 Query 241 -----VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLA 281 +P GT+ VHVPGGEV V + + S L GPS +VA G+ + Sbjct 240 AAVDHTTTPHGTVHVHVPGGEVTVDIYEGGSRLTGPSAIVATGETS 285 >gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] Length=276 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 156/278 (57%), Positives = 187/278 (68%), Gaps = 6/278 (2%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFV++ D + L L++ RV LCDRR G+G DG+LRV AGA + Sbjct 1 MKFAKGHGTENDFVIIEDHEGTLELSSERVRVLCDRRAGIGGDGLLRVVRAGA-----LG 55 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 + + EG+ DW+MDYRNADGS A+MCGNG RVFAH++R+ GL + FVVG+ AG + V Sbjct 56 EPVAEGIAPADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQV 115 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T H + A VSV+MG A G A + G F GL VD+GNPHLA V LT + LA Sbjct 116 TVHSFDEHDAQVSVEMGPAEVTGVSTASMVGENFAGLGVDMGNPHLAAVIPGLTPESLAD 175 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 + P FD FP GVNVEVLT VDGAV MRV ERGVGETRSCGTGTVAAA AALA Sbjct 176 MAFAQP-EFDHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGTGTVAAARAALAD 234 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARG 278 G GT+ V+VPGG+V V + D S L GPS +VA G Sbjct 235 AGEGAGTVIVNVPGGQVQVEIFDGGSRLTGPSRIVAEG 272 >gi|227833311|ref|YP_002835018.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] gi|262184295|ref|ZP_06043716.1| diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] gi|254767098|sp|C3PGX6.1|DAPF_CORA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|227454327|gb|ACP33080.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] Length=278 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/281 (56%), Positives = 185/281 (66%), Gaps = 4/281 (1%) Query 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 M FAKGHGT+NDFV+ V+ L +V ALCDRR G+GADGVLR+ AG A G + Sbjct 1 MKFAKGHGTENDFVI---VEGTGPLPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEI 57 Query 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 D L G+ DW+MDYRNADGS A+MCGNG RVFAH++R+ GL D F VG+ AG + V Sbjct 58 DELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLLEEDTFTVGTRAGAKQV 117 Query 121 TCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAA 180 T H A+VSV+MG A LG A + G F GL VD+GNPHLA V LT + LAA Sbjct 118 TVHSFSETEAEVSVEMGPAQVLGVSTASMAGESFAGLGVDMGNPHLAAVIPGLTAEDLAA 177 Query 181 LDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAA 240 + PV FD FP GVNVE++T DG + MRV ERG GETRSCGTGTVAAA AALA Sbjct 178 KRLEQPV-FDADFFPAGVNVELVTPLCDGVIHMRVFERGSGETRSCGTGTVAAACAALAD 236 Query 241 VGSPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLA 281 TG + V VPGGEV V +T+ S L GPS +VA G+ + Sbjct 237 ASQVTGHVRVIVPGGEVEVEITEDGSTLTGPSRIVATGETS 277 >gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] Length=306 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/291 (54%), Positives = 191/291 (66%), Gaps = 9/291 (3%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGTQNDFVLL D DA+L L+A RVA +CDRR G+G DG+LR AGA A G + + Sbjct 15 FGKGHGTQNDFVLLADPDAKLRLSAERVARICDRRAGIGGDGLLRAARAGALLAEGEIAA 74 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 LPEGV DW+MDYRNADG A QMCGNG RVFAH+LRA+GLE RDE V+G+ AG + V Sbjct 75 LPEGVGEEDWFMDYRNADGGAVQMCGNGARVFAHFLRANGLEERDEHVIGTRAGAKRVRL 134 Query 123 HHVEAAYADVSVDMGKANRLGA-------GEAVVGGRRFHGLAVDVGNPHLACVDSQLTV 175 + A+V V+MG+A R+G E G R F G AVDVGNPHL C+ L + Sbjct 135 LAFDRGSAEVEVEMGRA-RVGGRSAASLPAEGTEGRRVFDGFAVDVGNPHLVCLAPALGL 193 Query 176 DGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAV 235 DGLA LD+ +D FP+GVN+E + +RVHERGVGET++CGTG+VA A Sbjct 194 DGLAGLDLARQPEYDRDVFPEGVNIEFVVPHSPEKATLRVHERGVGETKACGTGSVAVAA 253 Query 236 AALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLADDWW 285 LA +GS G + V PGG+V V V +D +S L GPS LVARG+ W Sbjct 254 VVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEFDLGQW 304 >gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] Length=278 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 157/273 (58%), Positives = 181/273 (67%), Gaps = 10/273 (3%) Query 5 KGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLP 64 KGHGT+NDFV+L D D L T VAALCDR G+GADG+LRV A A Sbjct 13 KGHGTENDFVILVDTDNCLAPTPEEVAALCDRHAGIGADGLLRVVRARDINASSA----- 67 Query 65 EGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHH 124 DW+MDYRNADGS A+MCGNG+RVFAHYL SGLE EF+VG+ AG + VT H Sbjct 68 -----ADWFMDYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHA 122 Query 125 VEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALDVG 184 + ADVSV+MG+A+ G V+G F GL VDVGNPHLAC+ LT D L AL + Sbjct 123 ADERTADVSVEMGEASVTGVSTCVLGQTTFAGLGVDVGNPHLACIIPTLTKDQLEALPIQ 182 Query 185 APVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVGSP 244 + D FP GVNVE+ T VDGAV+MRV+ERGVGETRSCGTGTVA AVAALA G Sbjct 183 DGFAVDTEFFPAGVNVEIATELVDGAVYMRVNERGVGETRSCGTGTVATAVAALADAGLA 242 Query 245 TGTLTVHVPGGEVVVTVTDATSFLRGPSVLVAR 277 GT+ VHV GG V VTV D + LRGPS +V R Sbjct 243 DGTVAVHVLGGTVQVTVKDGKAALRGPSEIVFR 275 >gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length=275 Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 155/287 (55%), Positives = 184/287 (65%), Gaps = 18/287 (6%) Query 3 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDS 62 F KGHGTQNDFVLLPD L LTA RVAALCDR++G+GADGVLRV A +A+G Sbjct 6 FLKGHGTQNDFVLLPDAAGRLDLTAERVAALCDRQRGIGADGVLRVVRA---KAIGEES- 61 Query 63 LPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTC 122 V +W+MDYRNADGS A+MCGNG RVFA YL +GL EFV+G+ AG RPV Sbjct 62 ------VGEWFMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVV 115 Query 123 HHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLACVDSQLTVDGLAALD 182 H + V+V MG A G VV G+ F G+AV+VGNPHL V T +A LD Sbjct 116 HPDRS----VTVQMGPAAITGTSVTVVAGQPFSGVAVNVGNPHLVSV----TDTDIAGLD 167 Query 183 VGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGTGTVAAAVAALAAVG 242 + FD FP GVN+E + +GA+ MRVHERGVGETR+CGTGTVAA A+L G Sbjct 168 LRDQPDFDHDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASLHLAG 227 Query 243 SPTGTLTVHVPGGEVVVTVTDATSFLRGPSVLVARGDLADDWWNAMG 289 TG TV +PGG V VTV S L GP+ +VARG+L + WW A G Sbjct 228 KDTGESTVDIPGGRVSVTVGRGESTLTGPAEIVARGELDEAWWLAAG 274 Lambda K H 0.320 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 470845709104 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40