BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2743c Length=270 Score E Sequences producing significant alignments: (Bits) Value gi|15609880|ref|NP_217259.1| hypothetical protein Rv2743c [Mycob... 525 2e-147 gi|289444287|ref|ZP_06434031.1| conserved alanine rich membrane ... 524 6e-147 gi|289448399|ref|ZP_06438143.1| conserved alanine rich membrane ... 523 8e-147 gi|326904358|gb|EGE51291.1| conserved alanine rich membrane prot... 523 1e-146 gi|240171182|ref|ZP_04749841.1| hypothetical protein MkanA1_1785... 366 2e-99 gi|183981986|ref|YP_001850277.1| hypothetical protein MMAR_1972 ... 339 3e-91 gi|254776073|ref|ZP_05217589.1| hypothetical protein MaviaA2_155... 324 1e-86 gi|118464379|ref|YP_882811.1| hypothetical protein MAV_3634 [Myc... 323 2e-86 gi|342858391|ref|ZP_08715046.1| hypothetical protein MCOL_05936 ... 322 4e-86 gi|296164152|ref|ZP_06846762.1| alanine rich transmembrane prote... 317 1e-84 gi|41408952|ref|NP_961788.1| hypothetical protein MAP2854c [Myco... 316 3e-84 gi|118473582|ref|YP_887031.1| membrane alanine rich protein [Myc... 296 3e-78 gi|118618702|ref|YP_907034.1| hypothetical protein MUL_3385 [Myc... 289 3e-76 gi|120403390|ref|YP_953219.1| putative membrane alanine rich pro... 271 7e-71 gi|108799094|ref|YP_639291.1| hypothetical protein Mmcs_2127 [My... 253 2e-65 gi|145224567|ref|YP_001135245.1| hypothetical protein Mflv_3986 ... 251 8e-65 gi|333991132|ref|YP_004523746.1| hypothetical protein JDM601_249... 247 1e-63 gi|169630149|ref|YP_001703798.1| hypothetical protein MAB_3066c ... 236 3e-60 gi|254821891|ref|ZP_05226892.1| hypothetical protein MintA_18297... 228 1e-57 gi|467080|gb|AAA17263.1| B2235_C1_148 [Mycobacterium leprae] >gi... 132 6e-29 gi|229490867|ref|ZP_04384702.1| putative conserved membrane alan... 90.9 2e-16 gi|226306230|ref|YP_002766190.1| hypothetical protein RER_27430 ... 90.9 2e-16 gi|325672753|ref|ZP_08152449.1| hypothetical protein HMPREF0724_... 87.8 1e-15 gi|312139366|ref|YP_004006702.1| integral membrane protein [Rhod... 86.7 4e-15 gi|111023716|ref|YP_706688.1| hypothetical protein RHA1_ro06758 ... 79.7 4e-13 gi|257056501|ref|YP_003134333.1| hypothetical protein Svir_25120... 75.9 5e-12 gi|226366153|ref|YP_002783936.1| hypothetical protein ROP_67440 ... 70.5 3e-10 gi|296139493|ref|YP_003646736.1| hypothetical protein Tpau_1779 ... 63.2 4e-08 gi|54025824|ref|YP_120066.1| hypothetical protein nfa38540 [Noca... 52.4 8e-05 gi|134102324|ref|YP_001107985.1| hypothetical protein SACE_5877 ... 50.1 3e-04 gi|291003714|ref|ZP_06561687.1| hypothetical protein SeryN2_0425... 50.1 3e-04 gi|254821251|ref|ZP_05226252.1| hypothetical protein MintA_15037... 48.1 0.001 gi|333919365|ref|YP_004492946.1| hypothetical protein AS9A_1697 ... 47.4 0.002 gi|302528493|ref|ZP_07280835.1| predicted protein [Streptomyces ... 44.3 0.019 gi|344175497|emb|CCA88180.1| putative sensor signal transduction... 37.0 3.4 gi|70729863|ref|YP_259602.1| glutathione-regulated potassium-eff... 36.6 4.6 gi|284165253|ref|YP_003403532.1| D-lactate dehydrogenase (cytoch... 36.2 5.4 >gi|15609880|ref|NP_217259.1| hypothetical protein Rv2743c [Mycobacterium tuberculosis H37Rv] gi|15842283|ref|NP_337320.1| hypothetical protein MT2814 [Mycobacterium tuberculosis CDC1551] gi|31793917|ref|NP_856410.1| hypothetical protein Mb2764c [Mycobacterium bovis AF2122/97] 70 more sequence titles Length=270 Score = 525 bits (1353), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 270/270 (100%), Positives = 270/270 (100%), Gaps = 0/270 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG Sbjct 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR Sbjct 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE Sbjct 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ Sbjct 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 Query 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 QRYREELAGATDRLVAWAQAFDELGGLPRR Sbjct 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 >gi|289444287|ref|ZP_06434031.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis T46] gi|289570921|ref|ZP_06451148.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis T17] gi|289751399|ref|ZP_06510777.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis T92] gi|289417206|gb|EFD14446.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis T46] gi|289544675|gb|EFD48323.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis T17] gi|289691986|gb|EFD59415.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis T92] Length=270 Score = 524 bits (1349), Expect = 6e-147, Method: Compositional matrix adjust. Identities = 269/270 (99%), Positives = 269/270 (99%), Gaps = 0/270 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG Sbjct 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR Sbjct 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE Sbjct 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERAVQCS ASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ Sbjct 181 VVSMERAVQCSEASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 Query 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 QRYREELAGATDRLVAWAQAFDELGGLPRR Sbjct 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 >gi|289448399|ref|ZP_06438143.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289421357|gb|EFD18558.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis CPHL_A] Length=270 Score = 523 bits (1348), Expect = 8e-147, Method: Compositional matrix adjust. Identities = 269/270 (99%), Positives = 269/270 (99%), Gaps = 0/270 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG Sbjct 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR Sbjct 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDL AAANQTSAAMVATAAE Sbjct 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLKAAANQTSAAMVATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ Sbjct 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 Query 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 QRYREELAGATDRLVAWAQAFDELGGLPRR Sbjct 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 >gi|326904358|gb|EGE51291.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis W-148] gi|339295596|gb|AEJ47707.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis CCDC5079] Length=270 Score = 523 bits (1346), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 269/270 (99%), Positives = 269/270 (99%), Gaps = 0/270 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG Sbjct 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR Sbjct 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAMSALGASERGFFSLLGVMERGAML ADEIRDLTAAANQTSAAMVATAAE Sbjct 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLTADEIRDLTAAANQTSAAMVATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ Sbjct 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 Query 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 QRYREELAGATDRLVAWAQAFDELGGLPRR Sbjct 241 QRYREELAGATDRLVAWAQAFDELGGLPRR 270 >gi|240171182|ref|ZP_04749841.1| hypothetical protein MkanA1_17856 [Mycobacterium kansasii ATCC 12478] Length=271 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 215/271 (80%), Positives = 230/271 (85%), Gaps = 1/271 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVK+ QR R+LLQR +D ++ DL A+KIS A DPRARLLRRRRRALRW L+F+AG Sbjct 1 MAVKSAQRGRRRALLQRWLDMIAEIFDLAARKISAATDPRARLLRRRRRALRWALIFSAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C+ W VTA+LAAWGWF LL ITG IAV Q IPATLL RYRWLR+EPLP RPA+ RR Sbjct 61 CVFWAAVTAVLAAWGWFALLLQITGAIAVVQVIPATLLFFRYRWLRAEPLPTPRPANTRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAMSALGASERGFFSLLGV+ERGAMLPADEI DLTAAANQTSAAM ATAAE Sbjct 121 LPPPGSAARPAMSALGASERGFFSLLGVIERGAMLPADEIADLTAAANQTSAAMAATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPG- 239 VVSMERA S +SRS+LVPTINAFTAQLS GVRQYNEMVTAAAQLVSSANG PG Sbjct 181 VVSMERAAHYSESSRSHLVPTINAFTAQLSAGVRQYNEMVTAAAQLVSSANGGAVGEPGS 240 Query 240 QQRYREELAGATDRLVAWAQAFDELGGLPRR 270 QQRYREELAGATDRLV WAQAFDELGGLPRR Sbjct 241 QQRYREELAGATDRLVGWAQAFDELGGLPRR 271 >gi|183981986|ref|YP_001850277.1| hypothetical protein MMAR_1972 [Mycobacterium marinum M] gi|183175312|gb|ACC40422.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=271 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 203/271 (75%), Positives = 222/271 (82%), Gaps = 1/271 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVK+ QR R+LLQRG+D GDL+D A+KIS A DPRAR LRRRRRALRW L+F+AG Sbjct 1 MAVKSAQRGQRRALLQRGLDFVGDLSDFAARKISAATDPRARQLRRRRRALRWALIFSAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C+ W VTA+LAAWGWF LL ITG IAV Q IPATLL RY WLRSEPLP +RP + RR Sbjct 61 CVFWAAVTAVLAAWGWFALLLQITGAIAVVQVIPATLLFFRYYWLRSEPLPSQRPTTTRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPP GSAARPAM+ALGASERGFFSLLGVMERGA++PA EI+DLT AAN ++AAM ATAA+ Sbjct 121 LPPMGSAARPAMAALGASERGFFSLLGVMERGALVPAAEIQDLTDAANHSAAAMAATAAQ 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGA-GPG 239 VVSMERA Q S +SR LVPTINAFTAQL GVRQYNEMVTAAAQLVSSANGA A Sbjct 181 VVSMERAAQYSESSRGQLVPTINAFTAQLGAGVRQYNEMVTAAAQLVSSANGATVAEAVS 240 Query 240 QQRYREELAGATDRLVAWAQAFDELGGLPRR 270 QQRYR EL GATDRL WAQAFDELGGLPRR Sbjct 241 QQRYRHELVGATDRLAGWAQAFDELGGLPRR 271 >gi|254776073|ref|ZP_05217589.1| hypothetical protein MaviaA2_15575 [Mycobacterium avium subsp. avium ATCC 25291] Length=269 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 205/267 (77%), Positives = 221/267 (83%), Gaps = 2/267 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAV A Q PWR+LLQRGV A DL+DLVA+KIS A DPRARLLRRRRRALRWGL+FTAG Sbjct 1 MAVNATQPGPWRALLQRGVAAAADLSDLVARKISAATDPRARLLRRRRRALRWGLIFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C W ++T +LAAWGWF LL ITG +AV AIPATLLLLRYRWLR+EPLP RPA+VRR Sbjct 61 CAFWAVLTIMLAAWGWFALLLEITGAVAVVMAIPATLLLLRYRWLRAEPLPAPRPATVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAM ALGASERGF SLL V+ERGAMLPA EIRDLTAAA +TSAAM +TAA+ Sbjct 121 LPPPGSAARPAMYALGASERGFASLLAVLERGAMLPAAEIRDLTAAAGRTSAAMASTAAQ 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERA Q SRSYL PTINAFTAQLS GVRQYNEMVTAAA+LVS+ANG G Sbjct 181 VVSMERAAQAGEESRSYLAPTINAFTAQLSAGVRQYNEMVTAAARLVSAANGDGST--AS 238 Query 241 QRYREELAGATDRLVAWAQAFDELGGL 267 Q YR EL GATDRL WAQAFDELGGL Sbjct 239 QHYRAELVGATDRLNGWAQAFDELGGL 265 >gi|118464379|ref|YP_882811.1| hypothetical protein MAV_3634 [Mycobacterium avium 104] gi|118165666|gb|ABK66563.1| conserved hypothetical protein [Mycobacterium avium 104] Length=269 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 205/267 (77%), Positives = 221/267 (83%), Gaps = 2/267 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAV A Q PWR+LLQRGV A DL+DLVA+KIS A DPRARLLRRRRRALRWGL+FTAG Sbjct 1 MAVNATQPGPWRALLQRGVAAAADLSDLVARKISAATDPRARLLRRRRRALRWGLIFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C W ++T +LAAWGWF LL ITG +AV AIPATLLLLRYRWLR+EPLP RPA+VRR Sbjct 61 CAFWAVLTIVLAAWGWFALLLEITGAVAVVMAIPATLLLLRYRWLRAEPLPAPRPATVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAM ALGASERGF SLL V+ERGAMLPA EIRDLTAAA +TSAAM +TAA+ Sbjct 121 LPPPGSAARPAMYALGASERGFASLLAVLERGAMLPAAEIRDLTAAAGRTSAAMASTAAQ 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERA Q SRSYL PTINAFTAQLS GVRQYNEMVTAAA+LVS+ANG G Sbjct 181 VVSMERAAQAGEESRSYLAPTINAFTAQLSAGVRQYNEMVTAAARLVSAANGDGST--AS 238 Query 241 QRYREELAGATDRLVAWAQAFDELGGL 267 Q YR EL GATDRL WAQAFDELGGL Sbjct 239 QHYRAELVGATDRLNGWAQAFDELGGL 265 >gi|342858391|ref|ZP_08715046.1| hypothetical protein MCOL_05936 [Mycobacterium colombiense CECT 3035] gi|342134095|gb|EGT87275.1| hypothetical protein MCOL_05936 [Mycobacterium colombiense CECT 3035] Length=269 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 207/267 (78%), Positives = 223/267 (84%), Gaps = 2/267 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVKAGQ PWR+LL RG+ TA DL+DLVA++IS A DPRAR LRRRRRALRWGL+F+AG Sbjct 1 MAVKAGQPGPWRALLHRGLATAADLSDLVARRISAAADPRARQLRRRRRALRWGLIFSAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C+ W VT LLAAWGWF LL ITG +AV AIPATLLLLRYRWLR+EPLP R +VRR Sbjct 61 CVFWAAVTMLLAAWGWFALLLEITGGVAVFMAIPATLLLLRYRWLRAEPLPTPRTTNVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAM ALGASERGF SL+ V+ERGAMLP EIRDLTAAA +TSAAM +TAA+ Sbjct 121 LPPPGSAARPAMYALGASERGFSSLIAVIERGAMLPTAEIRDLTAAATRTSAAMASTAAQ 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERA Q S SRSYLVPTINAFTAQL GVRQYNEMVTAAAQLVSSANG G A Sbjct 181 VVSMERAAQASDESRSYLVPTINAFTAQLGAGVRQYNEMVTAAAQLVSSANGDGSA--AS 238 Query 241 QRYREELAGATDRLVAWAQAFDELGGL 267 Q YR ELAGATDRLV WAQAFDELGGL Sbjct 239 QHYRTELAGATDRLVGWAQAFDELGGL 265 >gi|296164152|ref|ZP_06846762.1| alanine rich transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900488|gb|EFG79884.1| alanine rich transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=269 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 201/267 (76%), Positives = 219/267 (83%), Gaps = 2/267 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAV + WR++L RG+ TA DL+ LVA+K+S A DPRARLLRRRRRALRWGL+F G Sbjct 1 MAVSETRGGLWRTVLGRGLATAADLSGLVARKLSAAADPRARLLRRRRRALRWGLIFAVG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C+ W VT LLAAWGWF LL ITG ++V AIPATLLLLRYRWLR+EPLP RP +VRR Sbjct 61 CVFWAAVTMLLAAWGWFALLLEITGAVSVVMAIPATLLLLRYRWLRAEPLPTPRPVNVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAM ALGASERGF SLL V+ERG+MLP EIRDLTAAAN++SAAM ATAAE Sbjct 121 LPPPGSAARPAMYALGASERGFLSLLNVIERGSMLPTAEIRDLTAAANKSSAAMAATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERA Q S +SRSYLV TINAFTAQLS GVRQYNEMVTAAAQLVSSANG A Sbjct 181 VVSMERAAQSSESSRSYLVSTINAFTAQLSAGVRQYNEMVTAAAQLVSSANGDQLA--AS 238 Query 241 QRYREELAGATDRLVAWAQAFDELGGL 267 QRYR EL GATDRLV WAQAFDELGGL Sbjct 239 QRYRTELTGATDRLVGWAQAFDELGGL 265 >gi|41408952|ref|NP_961788.1| hypothetical protein MAP2854c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397311|gb|AAS05171.1| hypothetical protein MAP_2854c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458938|gb|EGO37893.1| hypothetical protein MAPs_08210 [Mycobacterium avium subsp. paratuberculosis S397] Length=269 Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 202/267 (76%), Positives = 218/267 (82%), Gaps = 2/267 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAV A Q PWR+LLQRGV A DL+DLVA+KIS A DPRARLLRRRRRALRWGL+FTAG Sbjct 1 MAVNATQPGPWRALLQRGVAAAADLSDLVARKISAATDPRARLLRRRRRALRWGLIFTAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C W ++T +LAAWGWF LL ITG +AV AIPATLLLLRYRWLR+EPLP R +VRR Sbjct 61 CAFWAVLTIVLAAWGWFALLLEITGAVAVVMAIPATLLLLRYRWLRAEPLPAPRTTNVRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAM ALGASERGF SLL V+ERGAMLPA EI DLTAAA +TSAAM +TAA+ Sbjct 121 LPPPGSAARPAMYALGASERGFASLLAVLERGAMLPAAEICDLTAAAGRTSAAMASTAAQ 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMERA Q SRSYL PTINAFTAQLS GVRQYNEMVTAAA+LVS+ANG G Sbjct 181 VVSMERAAQAGEESRSYLAPTINAFTAQLSAGVRQYNEMVTAAARLVSAANGDGST--AS 238 Query 241 QRYREELAGATDRLVAWAQAFDELGGL 267 Q YR EL GATDRL WAQAFDELGGL Sbjct 239 QHYRAELVGATDRLNGWAQAFDELGGL 265 >gi|118473582|ref|YP_887031.1| membrane alanine rich protein [Mycobacterium smegmatis str. MC2 155] gi|118174869|gb|ABK75765.1| putative conserved membrane alanine rich protein [Mycobacterium smegmatis str. MC2 155] Length=278 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 177/277 (64%), Positives = 201/277 (73%), Gaps = 8/277 (2%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 M K G+ WRSLLQRG+DTA +++ VA+K++ A DPRA+LLR+RR ALR+ + FT Sbjct 1 MTTKTGRPEAWRSLLQRGIDTAAEVSGAVAEKLNAAADPRAKLLRKRRWALRFAVFFTFA 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 W VTA+LAAW +L+ITG IA A PATL LRYRWLR PLPV+RP RR Sbjct 61 TGFWVFVTAVLAAWTTPVWVLIITGAIAAGAAFPATLAWLRYRWLRRTPLPVQRPTVGRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPP GSAAR MSAL ASERG FSLLGVMERG MLP +E+ +LT ANQ + M+ATAAE Sbjct 121 LPPWGSAARQPMSALLASERGMFSLLGVMERGRMLPPEELHELTTVANQAARTMMATAAE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSAN-GAGGAGPG 239 VVSMERA + SR +LVPTINAF AQL+ GVRQYNEMVTAAAQLVSS N GA G PG Sbjct 181 VVSMERAAGNAPQSRPHLVPTINAFAAQLNQGVRQYNEMVTAAAQLVSSVNGGANGQMPG 240 Query 240 -------QQRYREELAGATDRLVAWAQAFDELGGLPR 269 QQRYR EL GATDRL WAQAFDELGGL R Sbjct 241 GPAAPLSQQRYRSELTGATDRLTGWAQAFDELGGLRR 277 >gi|118618702|ref|YP_907034.1| hypothetical protein MUL_3385 [Mycobacterium ulcerans Agy99] gi|118570812|gb|ABL05563.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=307 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 180/245 (74%), Positives = 200/245 (82%), Gaps = 1/245 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MAVK+ QR R+LLQRG+D GDL+D A+KIS A DPRAR LRRRRRALRW L+F+AG Sbjct 1 MAVKSAQRGQRRALLQRGLDFVGDLSDFAARKISAATDPRARQLRRRRRALRWALIFSAG 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C+ W VTA+LAAWGWF LL ITG IAV Q IPATLL RY WLRSEPLP +RP + RR Sbjct 61 CVFWAAVTAVLAAWGWFALLLQITGAIAVVQVIPATLLFFRYYWLRSEPLPSQRPTTTRR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPP GSAARPAM+A+GASERGFFSLLGVMERGA++PA EI+DLT AAN ++AAM ATAA+ Sbjct 121 LPPMGSAARPAMAAVGASERGFFSLLGVMERGALVPAAEIQDLTDAANHSAAAMAATAAQ 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGA-GPG 239 VVSMERA Q S +SR LVPTINAFTAQL GVRQYNEMVTAAAQLVSSANGA A Sbjct 181 VVSMERAAQYSESSRGQLVPTINAFTAQLGAGVRQYNEMVTAAAQLVSSANGATVAEAVS 240 Query 240 QQRYR 244 QQRYR Sbjct 241 QQRYR 245 >gi|120403390|ref|YP_953219.1| putative membrane alanine rich protein [Mycobacterium vanbaalenii PYR-1] gi|119956208|gb|ABM13213.1| putative conserved membrane alanine rich protein [Mycobacterium vanbaalenii PYR-1] Length=272 Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 161/269 (60%), Positives = 191/269 (72%), Gaps = 2/269 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 M+ + G+ WRSL QRG+DTA D +D+VA+K+ A DPRA+LLR+RR ALR G+ FT Sbjct 1 MSTRTGRPEAWRSLAQRGIDTAADWSDMVAEKLHAAADPRAKLLRKRRWALRLGVFFTLS 60 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 +LW VTALLA+W L I IAV ATL LRYRWLR EPLP +R + RR Sbjct 61 TVLWVGVTALLASWSTPVWALFIPAPIAVGAGFLATLAFLRYRWLRGEPLPPQRSRAARR 120 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPP GSAAR M++L ASERG FSLLGVMERG +LPA E+ +L AA QT+A M ATA E Sbjct 121 LPPLGSAARQPMASLAASERGLFSLLGVMERGQLLPAGELLELRVAAEQTAATMAATATE 180 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSAN-GAGGAGP- 238 VVSME+A + + SR+YL PTI A+T QL G RQYNEMV+AAAQLVS+AN G P Sbjct 181 VVSMEKAARSAPQSRAYLAPTITAYTTQLDRGARQYNEMVSAAAQLVSAANSGPMSRSPM 240 Query 239 GQQRYREELAGATDRLVAWAQAFDELGGL 267 Q+RYR+EL ATDRL WAQAFDELG L Sbjct 241 TQRRYRDELGMATDRLTGWAQAFDELGRL 269 >gi|108799094|ref|YP_639291.1| hypothetical protein Mmcs_2127 [Mycobacterium sp. MCS] gi|119868209|ref|YP_938161.1| hypothetical protein Mkms_2173 [Mycobacterium sp. KMS] gi|126434700|ref|YP_001070391.1| hypothetical protein Mjls_2114 [Mycobacterium sp. JLS] gi|108769513|gb|ABG08235.1| putative conserved membrane alanine rich protein [Mycobacterium sp. MCS] gi|119694298|gb|ABL91371.1| putative conserved membrane alanine rich protein [Mycobacterium sp. KMS] gi|126234500|gb|ABN97900.1| putative conserved membrane alanine rich protein [Mycobacterium sp. JLS] Length=283 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 162/263 (62%), Positives = 194/263 (74%), Gaps = 7/263 (2%) Query 11 WRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAGCLLWGLVTAL 70 WRS+LQRGVDTA +L+D+VA ++ A DPRA+LLR+RR ALR GL FT + W LVTA+ Sbjct 12 WRSMLQRGVDTAAELSDVVADRLHAAADPRAKLLRKRRWALRLGLFFTVTSVFWILVTAV 71 Query 71 LAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARP 130 LAAW + +ITG IA PATLLLLRYRWLR+EPLP R + RRLPP SAAR Sbjct 72 LAAWSTPFWVFIITGAIAAGAMFPATLLLLRYRWLRAEPLPPARSRASRRLPPFHSAARA 131 Query 131 AMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQC 190 M+AL ++ERG FSLLGVMERG MLPA+E+R+LT AA Q++A M ATAAEVVSMERA+ Sbjct 132 PMAALASAERGLFSLLGVMERGRMLPAEELRELTMAAQQSAATMAATAAEVVSMERAMAS 191 Query 191 SAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSAN-GAGGAGPGQQ------RY 243 + SR +L+PT+ AFTAQ+ GVRQY+EMV AAAQLVS+AN G + P RY Sbjct 192 TPMSRGHLMPTVRAFTAQMDQGVRQYHEMVDAAAQLVSAANTGTMSSSPLSNNTMYGRRY 251 Query 244 REELAGATDRLVAWAQAFDELGG 266 R+EL ATDRL WAQAFDELG Sbjct 252 RDELVNATDRLQGWAQAFDELGA 274 >gi|145224567|ref|YP_001135245.1| hypothetical protein Mflv_3986 [Mycobacterium gilvum PYR-GCK] gi|315444898|ref|YP_004077777.1| hypothetical protein Mspyr1_33310 [Mycobacterium sp. Spyr1] gi|145217053|gb|ABP46457.1| putative conserved membrane alanine rich protein [Mycobacterium gilvum PYR-GCK] gi|315263201|gb|ADT99942.1| hypothetical protein Mspyr1_33310 [Mycobacterium sp. Spyr1] Length=271 Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 158/269 (59%), Positives = 189/269 (71%), Gaps = 4/269 (1%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 ++ + G+ WRS+ QRG+DTA + + LVA ++S A DPRA+LLR+RRRALR G+ T Sbjct 2 VSTRTGRPDAWRSMAQRGIDTAAEWSGLVADRLSAAADPRAKLLRKRRRALRLGVFLTVS 61 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 + W +TAL+A W L I IAV A ATL LRYRWLR EPLP +R R Sbjct 62 AVFWVAMTALVAVWDTPVWALFIPSPIAVGAAFLATLAFLRYRWLRGEPLPPQR--ITRH 119 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPP GSAAR M+AL SERG FSLLG+MERG +LPA E+ +L AA QT+A MVAT+AE Sbjct 120 LPPWGSAARQPMAALTTSERGLFSLLGIMERGQLLPAGELLELRVAAEQTAATMVATSAE 179 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSAN-GAGGAGP- 238 VVSME+AV+ S SR+YL PTI AFTAQL G RQYNEMV AAAQLVS+AN G + P Sbjct 180 VVSMEKAVKSSPQSRAYLTPTIAAFTAQLDQGARQYNEMVGAAAQLVSAANSGTLSSSPM 239 Query 239 GQQRYREELAGATDRLVAWAQAFDELGGL 267 +RYR+EL ATDRL WAQAFDELG L Sbjct 240 SARRYRDELGMATDRLKGWAQAFDELGRL 268 >gi|333991132|ref|YP_004523746.1| hypothetical protein JDM601_2491 [Mycobacterium sp. JDM601] gi|333487099|gb|AEF36491.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=267 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 173/269 (65%), Positives = 199/269 (74%), Gaps = 3/269 (1%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MA+ G R R+LLQR VD A + AD++A K+ DPRARLLR+RR ALR GL F A Sbjct 1 MAMSVGGRSR-RALLQRAVDRASEAADVLADKLGAIADPRARLLRKRRWALRLGLFFGAA 59 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 C W LVTA+LA+W +L+ITG IA A PATLLLLR+RWLRS PLP R + RR Sbjct 60 CGFWLLVTAVLASWATPVWVLLITGLIAAGAAAPATLLLLRFRWLRSVPLPAARTVTARR 119 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 LPPPGSAARPAM ALGASERG SLLGV+ERG +LP DEI +LTAAA ++ M ATA + Sbjct 120 LPPPGSAARPAMYALGASERGMVSLLGVLERGRLLPGDEIAELTAAAGGAASTMAATAGQ 179 Query 181 VVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ 240 VVSMER VQ +A + YLVPTINAFTAQLS GVRQYNEMVTAAAQLV++AN PG Sbjct 180 VVSMERTVQHNAQAGQYLVPTINAFTAQLSAGVRQYNEMVTAAAQLVAAANDGSTISPGT 239 Query 241 QRYREELAGATDRLVAWAQAFDELGGLPR 269 YREELAGATDR++ WAQAF+EL PR Sbjct 240 --YREELAGATDRMLGWAQAFEELAQSPR 266 >gi|169630149|ref|YP_001703798.1| hypothetical protein MAB_3066c [Mycobacterium abscessus ATCC 19977] gi|169242116|emb|CAM63144.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=275 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 134/259 (52%), Positives = 167/259 (65%), Gaps = 2/259 (0%) Query 11 WRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAGCLLWGLVTAL 70 W LL+R DL + +A ++ D R +LLR+R RA RW + + C+ LVT + Sbjct 15 WEQLLRRLATNVNDLGEELAARMRAMSDKREKLLRKRLRAKRWSIRWALACVAGLLVTTV 74 Query 71 LAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARP 130 LA G LL+I + AIPAT LL+RYR+L++EPLP RP RRLPP GS+ARP Sbjct 75 LATTGAPPWLLIIPALLTAGCAIPATYLLVRYRYLKAEPLPPPRPGVERRLPPYGSSARP 134 Query 131 AMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQC 190 M+AL A+ER FSLLGV+ERG+M+P E R + +AAN+ + M ATA EVVSMERA Sbjct 135 PMAALDAAERSLFSLLGVVERGSMIPESEGRQVLSAANRAAYVMAATAKEVVSMERAAAE 194 Query 191 SAASRSYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQR--YREELA 248 + +R YL PTI AFTAQL TGVRQYNE+VTAAAQLVS+ NG R ++L Sbjct 195 TPHTREYLQPTIKAFTAQLDTGVRQYNELVTAAAQLVSAGNGGAVVASPMSRGALFDDLV 254 Query 249 GATDRLVAWAQAFDELGGL 267 ATDRL WA A DELG L Sbjct 255 SATDRLTGWAGALDELGQL 273 >gi|254821891|ref|ZP_05226892.1| hypothetical protein MintA_18297 [Mycobacterium intracellulare ATCC 13950] Length=166 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/164 (82%), Positives = 140/164 (86%), Gaps = 2/164 (1%) Query 104 WLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDL 163 WLRSEPLPV R + RRLPPPGSAARPAM ALGASERGFFSL+ V+ERGAMLP EIRDL Sbjct 1 WLRSEPLPVPRTTTARRLPPPGSAARPAMYALGASERGFFSLVAVLERGAMLPTAEIRDL 60 Query 164 TAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLVPTINAFTAQLSTGVRQYNEMVTAA 223 TAAA +TSAAM +TAA+VVSMERA Q S SRSYLVPTINAFTAQLS GVRQYNEMVTAA Sbjct 61 TAAATKTSAAMASTAAQVVSMERAAQASEQSRSYLVPTINAFTAQLSAGVRQYNEMVTAA 120 Query 224 AQLVSSANGAGGAGPGQQRYREELAGATDRLVAWAQAFDELGGL 267 AQLVSSANG G QRYR ELAGATDRL+ WAQAFDELGGL Sbjct 121 AQLVSSANGDGLT--ESQRYRAELAGATDRLLGWAQAFDELGGL 162 >gi|467080|gb|AAA17263.1| B2235_C1_148 [Mycobacterium leprae] gi|2052100|emb|CAB08128.1| unknown [Mycobacterium leprae] Length=123 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 92/123 (75%), Positives = 104/123 (85%), Gaps = 0/123 (0%) Query 3 VKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAGCL 62 + QR WR+L++RG+DT DL+DL+A+KISV +DPRARLLRRRRRALRWGL+F GCL Sbjct 1 MNVSQRGQWRALMRRGLDTITDLSDLLAKKISVVLDPRARLLRRRRRALRWGLIFGFGCL 60 Query 63 LWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLP 122 WG+VTALLAAWGWFT LL ITG+IAV QAIPATLLLLRYRWLRSEPLP RP VRRL Sbjct 61 FWGVVTALLAAWGWFTLLLQITGSIAVLQAIPATLLLLRYRWLRSEPLPTWRPNGVRRLL 120 Query 123 PPG 125 PPG Sbjct 121 PPG 123 >gi|229490867|ref|ZP_04384702.1| putative conserved membrane alanine rich protein [Rhodococcus erythropolis SK121] gi|229322257|gb|EEN88043.1| putative conserved membrane alanine rich protein [Rhodococcus erythropolis SK121] Length=254 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/240 (35%), Positives = 123/240 (52%), Gaps = 18/240 (7%) Query 38 DPRARL----LRRRRRALRWGLVFTAGCLLWGLVTALLAAWGWFTSLLVITGTIAVTQAI 93 DPRA+ R RRRA RWG + + G ++ A+ +A W +V+ G A A+ Sbjct 24 DPRAKFERKRARARRRAQRWGFM-SGGSVVGTAGLAVASAPEWS---VVVAGGGAALFAV 79 Query 94 PATLLLLRYRWLRSEP---LPVRRPASVRRLPPPGSAARPAMSALGASERGFFSLLGVME 150 PA + + RYR + S P P+RR RLPP S A MS L +E F +L V+ Sbjct 80 PAVIAVGRYRSMSSGPPPSAPIRR-----RLPPSSSRAFIPMSRLIGAETSLFEILSVLR 134 Query 151 RGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLVPTINAFTAQLS 210 R + E+ ++T A+ AM A +++VV+MERAV + L PTI+ +L Sbjct 135 RADTIDPGELDEITVTADSALRAMFAVSSDVVAMERAVGATPKVTEPLDPTIDGAVRELQ 194 Query 211 TGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLVAWAQAFDELGGLPRR 270 +G+ QY ++VT+AA L +A + A G R L A +RL A A A E+ + R+ Sbjct 195 SGLDQYEDLVTSAAAL--TAPHSPSALVGFNRELSALHAAAERLSALADAIGEVDDITRK 252 >gi|226306230|ref|YP_002766190.1| hypothetical protein RER_27430 [Rhodococcus erythropolis PR4] gi|226185347|dbj|BAH33451.1| hypothetical protein RER_27430 [Rhodococcus erythropolis PR4] Length=281 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/240 (35%), Positives = 123/240 (52%), Gaps = 18/240 (7%) Query 38 DPRARL----LRRRRRALRWGLVFTAGCLLWGLVTALLAAWGWFTSLLVITGTIAVTQAI 93 DPRA+ R RRRA RWG + + G ++ A+ +A W +V+ G A A+ Sbjct 51 DPRAKFERKRARARRRAQRWGFM-SGGSVVGTAGLAVASAPEWS---VVVAGGGAALFAV 106 Query 94 PATLLLLRYRWLRSEP---LPVRRPASVRRLPPPGSAARPAMSALGASERGFFSLLGVME 150 PA + + RYR + S P P+RR RLPP S A MS L +E F +L V+ Sbjct 107 PAVIAVGRYRSMSSGPPPSAPIRR-----RLPPSSSRAFIPMSRLIGAETSLFEILSVLR 161 Query 151 RGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLVPTINAFTAQLS 210 R + E+ ++T A+ AM A +++VV+MERAV + L PTI+ +L Sbjct 162 RADTIDPGELDEITVTADSALRAMFAVSSDVVAMERAVAATPKVTEPLDPTIDGAVRELQ 221 Query 211 TGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLVAWAQAFDELGGLPRR 270 +G+ QY ++VT+AA L +A + A G R L A +RL A A A E+ + R+ Sbjct 222 SGLDQYEDLVTSAAAL--TAPHSPSALVGFNRELSALHAAAERLSALADAIGEVDDITRK 279 >gi|325672753|ref|ZP_08152449.1| hypothetical protein HMPREF0724_10230 [Rhodococcus equi ATCC 33707] gi|325556630|gb|EGD26296.1| hypothetical protein HMPREF0724_10230 [Rhodococcus equi ATCC 33707] Length=256 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/191 (39%), Positives = 105/191 (55%), Gaps = 5/191 (2%) Query 81 LVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR-LPPPGSAARPAMSALGASE 139 +V TG A A+PA + + YR L + PLP P R+ LPP GSAAR M L A+E Sbjct 67 VVATGGAAALFAVPAVVAVGTYRRLTATPLPA--PTVTRQPLPPAGSAARAPMERLAAAE 124 Query 140 RGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLV 199 +LGV+ R +++ DE+ A SAA+ + A++VV+ME A + +AA+ +L Sbjct 125 SSLNQILGVLGRSSVVDVDELDHTGETARAASAALRSVASDVVAMENAGRGTAAAAPHLE 184 Query 200 PTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLVAWAQ 259 + QL+ GV QY +V AAA++ + A + A R REEL A+DRL WA Sbjct 185 HAVRNAEQQLADGVVQYEGLVAAAARMTAPAQSSSYA--MLDRQREELLSASDRLEGWAD 242 Query 260 AFDELGGLPRR 270 A E+ + RR Sbjct 243 ALGEVDEIDRR 253 >gi|312139366|ref|YP_004006702.1| integral membrane protein [Rhodococcus equi 103S] gi|311888705|emb|CBH48017.1| putative integral membrane protein [Rhodococcus equi 103S] Length=256 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/191 (38%), Positives = 105/191 (55%), Gaps = 5/191 (2%) Query 81 LVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR-LPPPGSAARPAMSALGASE 139 +V TG A A+PA + + YR L + PLP P R+ LPP GSAAR M L A+E Sbjct 67 VVATGGAAALFAVPAVVAVGTYRRLTATPLPA--PTVTRQPLPPAGSAARAPMERLAAAE 124 Query 140 RGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLV 199 +LGV+ R +++ DE+ A SAA+ + A++VV+ME A + +AA+ +L Sbjct 125 SSLNQILGVLGRSSVVDVDELDHTGETARAASAALRSVASDVVAMENAGRGTAAAAPHLE 184 Query 200 PTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLVAWAQ 259 + QL+ GV QY +V AAA++ + A + + R REEL A+DRL WA Sbjct 185 HAVRNAEQQLADGVVQYEGLVAAAARMTAPAQSS--SYTMLDRQREELLSASDRLEGWAD 242 Query 260 AFDELGGLPRR 270 A E+ + RR Sbjct 243 ALGEVDEIDRR 253 >gi|111023716|ref|YP_706688.1| hypothetical protein RHA1_ro06758 [Rhodococcus jostii RHA1] gi|110823246|gb|ABG98530.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=276 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/191 (38%), Positives = 101/191 (53%), Gaps = 5/191 (2%) Query 81 LVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASER 140 L++ G AV A+PA L + R+R L + LP+ PA R LP P SAAR M L SER Sbjct 88 LLMAGGGAVVFAVPAVLAVSRFRKLDAVTLPLGLPAR-RVLPGPSSAAREPMERLVHSER 146 Query 141 GFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLVP 200 +LGV+ R + ++I D + A AA+ A A ++ SME A + S A+ + L Sbjct 147 ALHGILGVLSRSGSISGEDIEDTHSTARSAGAALQAVALDITSMEDAARGSRAAAASLHR 206 Query 201 TINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRY-REELAGATDRLVAWAQ 259 I + AQL GV Q+ E+V AAA++ + G+ Y R EL AT++L A Sbjct 207 AIASAAAQLDDGVDQFEELVAAAAEVAVPGT---TSAVGELAYERAELVSATEKLTGLAV 263 Query 260 AFDELGGLPRR 270 A E+ + RR Sbjct 264 ALGEIDDIVRR 274 >gi|257056501|ref|YP_003134333.1| hypothetical protein Svir_25120 [Saccharomonospora viridis DSM 43017] gi|256586373|gb|ACU97506.1| hypothetical protein Svir_25120 [Saccharomonospora viridis DSM 43017] Length=309 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 78/238 (33%), Positives = 113/238 (48%), Gaps = 24/238 (10%) Query 38 DPRARLLRRRRR---ALRWGLVFTAGCLLWGL-----VTALLAAW-GWFTSLLVITGTIA 88 DP A+ RR+RR AL +V + C+L+ L +T + W G F+ L+ GT+ Sbjct 82 DPAAKHERRKRRTSRALTLWIVLSLLCVLYALAGYTGITGGIDGWQGAFSGLV---GTV- 137 Query 89 VTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASERGFFSLLGV 148 V A+ + Y+ R P RRP++ LP PGSAAR M L SE LL Sbjct 138 VFSALSVRSGIRLYQLSRMSVPPARRPST---LPRPGSAAREPMERLARSESSLAELLDQ 194 Query 149 ME-RGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERA-VQCSAASRSYLVPTINAFT 206 + A +P + + A +T++A+ A A+ + S+ERA AA R L I Sbjct 195 LSTTSAPVPPLTVEQTRSTAAETASALRALASRIESVERARASAPAAERPALDSAIAGLR 254 Query 207 AQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLVAWAQAFDEL 264 QL GV +Y +V AA + V++ + G ++ L ATDRL A A EL Sbjct 255 EQLEDGVEEYGALVAAAGRTVAATDS------GMPEAKDALTDATDRLAGLASALREL 306 >gi|226366153|ref|YP_002783936.1| hypothetical protein ROP_67440 [Rhodococcus opacus B4] gi|226244643|dbj|BAH54991.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=278 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/191 (38%), Positives = 101/191 (53%), Gaps = 5/191 (2%) Query 81 LVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASER 140 +++ G AV A+PA L + RYR L + LP PA R LP P S AR +M L SER Sbjct 90 MLMAGGGAVVFAVPAVLAVSRYRKLDAVTLPPGLPAR-RVLPAPTSVARESMERLVHSER 148 Query 141 GFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLVP 200 +LGV+ R + ++I D A A +AA+ A A ++ SME A + S A+ + L Sbjct 149 ALHGILGVLSRSGTISGEDIEDTHATARSAAAALQAVALDITSMEDAARGSRAAAAPLHR 208 Query 201 TINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRY-REELAGATDRLVAWAQ 259 I + AQL GV Q+ E+V AAA++ + G+ Y R EL AT++L A Sbjct 209 AITSAAAQLGDGVEQFEELVAAAAEVAVPGT---ASAVGELAYERAELVSATEKLAGLAA 265 Query 260 AFDELGGLPRR 270 A E+ + RR Sbjct 266 ALGEIDDIVRR 276 >gi|296139493|ref|YP_003646736.1| hypothetical protein Tpau_1779 [Tsukamurella paurometabola DSM 20162] gi|296027627|gb|ADG78397.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=268 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 89/190 (47%), Gaps = 10/190 (5%) Query 83 ITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASERGF 142 IT IAV PA + R L+ P+P R A R +P SA + L +E+ F Sbjct 80 ITAVIAV----PAAYAYRKLRRLKKAPVPPRSYAR-RTIPASSSAVHDPVRRLADAEQEF 134 Query 143 FSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAASRSYLVPTI 202 +L+ V+ R LP D + +L A ++ A+V+ ++V +ERA+ + S L + Sbjct 135 LALVSVLYRSRALPPDALSELDDDAETSADAIVSYGEQLVDLERAIAGGSESAIMLRTVL 194 Query 203 NAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQ----QRYREELAGATDRLVAWA 258 + L G+ Y EMV +AA V++A + G+ P + R L +RL AWA Sbjct 195 DDGLRSLDEGIVTYQEMVRSAASTVAAARQSLGS-PSRFDDLSRATPRLQETAERLRAWA 253 Query 259 QAFDELGGLP 268 L +P Sbjct 254 YGIAALPPVP 263 >gi|54025824|ref|YP_120066.1| hypothetical protein nfa38540 [Nocardia farcinica IFM 10152] gi|54017332|dbj|BAD58702.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=296 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/177 (31%), Positives = 85/177 (49%), Gaps = 16/177 (9%) Query 101 RYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEI 160 RY +R PLP R RR PP SAAR ++ L +ER + + G LP DE+ Sbjct 117 RYLRMRGAPLPQPR-FQPRRQPPLRSAARAPIARLVRAERAMHGVTTQIAAGRRLPPDEL 175 Query 161 RDLTAAANQTSAAMVATAAEVVSMERAVQC----SAASRSYLVPTINAFTAQLSTGVRQY 216 ++ A +AA+ A AA++V ME+A+ + + + L + + A+L GV +Y Sbjct 176 VEMVETAASGAAALHALAADIVQMEQALDVIGRGNPQAAAALAESTHGALARLEAGVGEY 235 Query 217 NEMVTAAAQLVSSANGAGGAGPGQQRYREE-----LAGATDRLVAWAQAFDELGGLP 268 +++ AA +++ + Y+ E L A DRL WAQA E+ P Sbjct 236 EQVLAAAGHVLAVPESS------VVTYQFEGIVADLRHAADRLDGWAQALTEIADRP 286 >gi|134102324|ref|YP_001107985.1| hypothetical protein SACE_5877 [Saccharopolyspora erythraea NRRL 2338] gi|133914947|emb|CAM05060.1| possible conserved transmembrane alanine rich protein [Saccharopolyspora erythraea NRRL 2338] Length=315 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 87/251 (35%), Positives = 117/251 (47%), Gaps = 24/251 (9%) Query 29 VAQKISVAIDPRARLLRRRRRALRW--GLVFTAGCLLWGLVT--ALLAAWGWFTSLLVIT 84 V +KI+ DPRARLLR+RRRA R G T G L G A+ A W SL + Sbjct 31 VRRKIAQWRDPRARLLRQRRRAKRTTVGSAVTTGVLGAGSYASFAMDAMWAAAGSLGEVA 90 Query 85 --------GTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALG 136 G +AV L+YR L+ PLP P V LPP GS AR M L Sbjct 91 QQGAVFGLGGLAVASGAATVGAGLKYRRLKRTPLPEAAPDPV-ELPPAGSQAREPMRRLR 149 Query 137 ASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAAS-R 195 +E+ L + A E D A A+QT+ A+ AA + ++E A+Q + AS R Sbjct 150 DAEQSLHGALAQLT--ATGTGSEAVDARATADQTATALRQVAARLQAVEAAIQHAPASDR 207 Query 196 SYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLV 255 L + A+L G+ Y +V AA + V+++ +Q+Y + ATDRLV Sbjct 208 PALEDDVRKLRAELDEGIDTYCGLVAAAGRAVAASGAP------EQKYL--IQDATDRLV 259 Query 256 AWAQAFDELGG 266 A A EL G Sbjct 260 GLAAALQELSG 270 >gi|291003714|ref|ZP_06561687.1| hypothetical protein SeryN2_04252 [Saccharopolyspora erythraea NRRL 2338] Length=289 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 87/251 (35%), Positives = 117/251 (47%), Gaps = 24/251 (9%) Query 29 VAQKISVAIDPRARLLRRRRRALRW--GLVFTAGCLLWGLVT--ALLAAWGWFTSLLVIT 84 V +KI+ DPRARLLR+RRRA R G T G L G A+ A W SL + Sbjct 5 VRRKIAQWRDPRARLLRQRRRAKRTTVGSAVTTGVLGAGSYASFAMDAMWAAAGSLGEVA 64 Query 85 --------GTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALG 136 G +AV L+YR L+ PLP P V LPP GS AR M L Sbjct 65 QQGAVFGLGGLAVASGAATVGAGLKYRRLKRTPLPEAAPDPV-ELPPAGSQAREPMRRLR 123 Query 137 ASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAAS-R 195 +E+ L + A E D A A+QT+ A+ AA + ++E A+Q + AS R Sbjct 124 DAEQSLHGALAQLT--ATGTGSEAVDARATADQTATALRQVAARLQAVEAAIQHAPASDR 181 Query 196 SYLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLV 255 L + A+L G+ Y +V AA + V+++ +Q+Y + ATDRLV Sbjct 182 PALEDDVRKLRAELDEGIDTYCGLVAAAGRAVAASGAP------EQKYL--IQDATDRLV 233 Query 256 AWAQAFDELGG 266 A A EL G Sbjct 234 GLAAALQELSG 244 >gi|254821251|ref|ZP_05226252.1| hypothetical protein MintA_15037 [Mycobacterium intracellulare ATCC 13950] Length=39 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/39 (62%), Positives = 30/39 (77%), Gaps = 0/39 (0%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDP 39 MAV A + R WR+LL RG+ TA D++DLVA+KIS A DP Sbjct 1 MAVNAPRPRLWRALLHRGLATAADVSDLVARKISAAADP 39 >gi|333919365|ref|YP_004492946.1| hypothetical protein AS9A_1697 [Amycolicicoccus subflavus DQS3-9A1] gi|333481586|gb|AEF40146.1| Putative conserved membrane alanine rich protein [Amycolicicoccus subflavus DQS3-9A1] Length=293 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 83/278 (30%), Positives = 125/278 (45%), Gaps = 20/278 (7%) Query 1 MAVKAGQRRPWRSLLQRGVDTAGDLADLVAQKISVAIDPRARLLRRRRRALRWGLVFTAG 60 MA+ RR W L R D A+K + DPR +LLR+ RRA R F Sbjct 1 MAMGGDARRVWSELQGRVTD--------AARKWT---DPREKLLRKTRRARRRTARFGGL 49 Query 61 CLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSEPLPVRRPASVRR 120 T LA +V G + + A+PA + ++R R+ PLP RRPA Sbjct 50 SAFSAAGTGTLALSSAPEWTIVAGGGVTLLTAVPAVVAWRKFREYRARPLPPRRPARRFE 109 Query 121 LPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAANQTSAAMVATAAE 180 P SA AM+ + A+E+ + L+ V+ R +P+ E ++ AA A+ A + Sbjct 110 -PHHASAVHSAMTRMSAAEQSLYRLVLVLNRSNAIPSGEADEILRAAMAAGDALETAARD 168 Query 181 VVSME--RAVQCSAASRS----YLVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAG 234 V ME R +A R+ L I TA ++ GV + ++ AAA++ +A G Sbjct 169 TVGMEYARTRLHAAGDRTGAAADLAEPIRNLTAHINRGVAEVEDLTAAAARMTDAALGMS 228 Query 235 GAG--PGQQRYREELAGATDRLVAWAQAFDELGGLPRR 270 G G + R++L TDR+ A EL GL ++ Sbjct 229 REGVLSGLDQQRDDLLSVTDRVAGLTSALQELHGLSQQ 266 >gi|302528493|ref|ZP_07280835.1| predicted protein [Streptomyces sp. AA4] gi|302437388|gb|EFL09204.1| predicted protein [Streptomyces sp. AA4] Length=327 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 74/248 (30%), Positives = 104/248 (42%), Gaps = 34/248 (13%) Query 38 DPRARLLRRRRRALRWGLVFTAGCLLWGLVTALLAAWGWFTSLLVITGTIA---VTQAIP 94 +P A+ RR RR R V T LW LVT LL ++ G +A + QA+ Sbjct 94 EPSAKHQRRIRRTSR---VLT----LWVLVTILLGILTVLAGTGLLGGAMAGPEIGQAVF 146 Query 95 ---ATLLL--------LRYRWLRSEPLPVRRPASVRRLPPPGSAARPAMSALGASERGFF 143 ATL+ +R R L+ LP P+ LP GSAAR M L SE Sbjct 147 SGFATLVFGTFSVRTGMRLRELKKVELPAA-PSGPPPLPAAGSAAREPMERLAESEASLR 205 Query 144 SLLGVMERGAML-----PADEIRDLTAAANQTSAAMVATAAEVVSMERAVQCSAA-SRSY 197 LL + L P + D A A++ + A+ A + ++ER + R Sbjct 206 ELLRQLSVPTSLGTTAVPEVSVADARATADEAARALRGLADRIQAIERGRDSAPERERPA 265 Query 198 LVPTINAFTAQLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRYREELAGATDRLVAW 257 L + QL G+ Y +V AA + V++++ G RE L ATDRL Sbjct 266 LQAAVAKLREQLDDGLEGYGGLVAAAGRAVAASSD------GMVTSREALTDATDRLAGL 319 Query 258 AQAFDELG 265 A A +LG Sbjct 320 ALALKDLG 327 >gi|344175497|emb|CCA88180.1| putative sensor signal transduction histidine kinase [Ralstonia syzygii R24] Length=562 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 53/180 (30%), Positives = 78/180 (44%), Gaps = 13/180 (7%) Query 49 RALRWGLVFTAGCLLWGLVTALLAAWGWFTSLLVITGTIAVTQAIPATLLLLRYRWLRSE 108 R+LR ++F AG L ALL G T+L + VT+++ L+ R ++ Sbjct 13 RSLRRQILFAAGGL------ALLILAGGATALYALRSATDVTRSLADEQLV---RMQDAQ 63 Query 109 PLPVRRPASVRRLPPPGSAARPAMSALGASERGFFSLLGVMERGAMLPADEIRDLTAAAN 168 L VRR + R S A A A+ A + L V +R A+ AD+ DLT Sbjct 64 DL-VRRTLLIERASAQLSDAASA-DAVRARYTDIVAQLTVFDRLALRLADDGDDLTVLDL 121 Query 169 QTSAAMVATAAEVVSMERAVQCSAASRSY--LVPTINAFTAQLSTGVRQYNEMVTAAAQL 226 S+ + +V+ R Q +A+R+ P A VRQ E + AAAQL Sbjct 122 HQSSQLFRNTINIVAQLRESQLQSAARASPGKPPATGRDEAPFRDDVRQQAEALVAAAQL 181 >gi|70729863|ref|YP_259602.1| glutathione-regulated potassium-efflux system protein [Pseudomonas fluorescens Pf-5] gi|68344162|gb|AAY91768.1| glutathione-regulated potassium-efflux system protein [Pseudomonas fluorescens Pf-5] Length=607 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 29/83 (35%), Positives = 40/83 (49%), Gaps = 6/83 (7%) Query 47 RRRALRWGLVFTAGCLLWGLVTALLAAWGWFT----SLLVITGTIAVTQAIPATLLLLRY 102 R A+R G+V AG +V + G F LLV+T I ++ A+ LLL Sbjct 326 RESAVRLGVVLAAGGEFAFVVFKIGRDQGLFEPRLYDLLVLT--ITLSMALTPLLLLACT 383 Query 103 RWLRSEPLPVRRPASVRRLPPPG 125 RWL+ + PV PA RR+ G Sbjct 384 RWLKPKAKPVEMPAEYRRIDSDG 406 >gi|284165253|ref|YP_003403532.1| D-lactate dehydrogenase (cytochrome) [Haloterrigena turkmenica DSM 5511] gi|284014908|gb|ADB60859.1| D-lactate dehydrogenase (cytochrome) [Haloterrigena turkmenica DSM 5511] Length=473 Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust. Identities = 23/62 (38%), Positives = 32/62 (52%), Gaps = 2/62 (3%) Query 208 QLSTGVRQYNEMVTAAAQLVSSANGAGGAGPGQQRY--REELAGATDRLVAWAQAFDELG 265 QL G R Y E+V A ++ +A G G G G+++Y E AGA D + + A D G Sbjct 392 QLERGERVYREVVELAIEMGGTATGEHGIGQGKRKYLEPEHGAGAVDAMRSIKHALDPTG 451 Query 266 GL 267 L Sbjct 452 TL 453 Lambda K H 0.322 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 416743905326 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40