BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2745c

Length=112
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|254365396|ref|ZP_04981441.1|  hypothetical transcriptional reg...   213    6e-54
gi|15609882|ref|NP_217261.1|  transcriptional regulatory protein ...   213    7e-54
gi|183981984|ref|YP_001850275.1|  transcriptional regulatory prot...   159    2e-37
gi|118618704|ref|YP_907036.1|  transcriptional regulatory protein...   158    2e-37
gi|41408954|ref|NP_961790.1|  hypothetical protein MAP2856c [Myco...   157    7e-37
gi|254821249|ref|ZP_05226250.1|  DNA-binding protein [Mycobacteri...   156    8e-37
gi|296171710|ref|ZP_06852903.1|  transcriptional regulatory prote...   156    1e-36
gi|240171180|ref|ZP_04749839.1|  transcriptional regulatory prote...   155    1e-36
gi|342858389|ref|ZP_08715044.1|  DNA-binding protein [Mycobacteri...   142    2e-32
gi|118467423|ref|YP_887029.1|  XRE family transcriptional regulat...   141    3e-32
gi|145224569|ref|YP_001135247.1|  XRE family transcriptional regu...   137    7e-31
gi|108799092|ref|YP_639289.1|  XRE family transcriptional regulat...   134    5e-30
gi|120403388|ref|YP_953217.1|  XRE family transcriptional regulat...   134    6e-30
gi|333991134|ref|YP_004523748.1|  transcriptional regulator [Myco...   125    2e-27
gi|169630151|ref|YP_001703800.1|  transcriptional regulator [Myco...   122    2e-26
gi|312139364|ref|YP_004006700.1|  transcriptional regulator [Rhod...   107    4e-22
gi|336117759|ref|YP_004572527.1|  putative Xre family DNA binding...   106    1e-21
gi|226306228|ref|YP_002766188.1|  Xre family DNA-binding protein ...   106    1e-21
gi|111023714|ref|YP_706686.1|  transcriptional regulator [Rhodoco...   106    1e-21
gi|226366151|ref|YP_002783934.1|  Xre family DNA-binding protein ...   105    2e-21
gi|289751402|ref|ZP_06510780.1|  transcriptional regulator [Mycob...   103    1e-20
gi|284030929|ref|YP_003380860.1|  helix-turn-helix domain-contain...   102    2e-20
gi|317125297|ref|YP_004099409.1|  helix-turn-helix domain protein...   102    2e-20
gi|54025826|ref|YP_120068.1|  hypothetical protein nfa38560 [Noca...   101    4e-20
gi|308176874|ref|YP_003916280.1|  hypothetical protein AARI_10990...   101    4e-20
gi|309811275|ref|ZP_07705064.1|  DNA-binding helix-turn-helix pro...  98.6    2e-19
gi|262202131|ref|YP_003273339.1|  XRE family transcriptional regu...  98.2    3e-19
gi|119960859|ref|YP_947357.1|  helix-turn-helix domain-containing...  97.1    8e-19
gi|269956038|ref|YP_003325827.1|  XRE family transcriptional regu...  97.1    9e-19
gi|152965455|ref|YP_001361239.1|  helix-turn-helix domain-contain...  96.7    9e-19
gi|289705933|ref|ZP_06502309.1|  helix-turn-helix domain-containi...  96.7    1e-18
gi|257068234|ref|YP_003154489.1|  Helix-turn-helix protein [Brach...  96.3    1e-18
gi|239917249|ref|YP_002956807.1|  Helix-turn-helix protein [Micro...  95.9    2e-18
gi|163839475|ref|YP_001623880.1|  transcriptional regulator [Reni...  95.5    2e-18
gi|256379796|ref|YP_003103456.1|  helix-turn-helix domain-contain...  95.5    2e-18
gi|116670018|ref|YP_830951.1|  XRE family transcriptional regulat...  95.5    2e-18
gi|296129386|ref|YP_003636636.1|  XRE family transcriptional regu...  95.5    2e-18
gi|343927013|ref|ZP_08766501.1|  putative Xre family DNA-binding ...  95.5    2e-18
gi|220912228|ref|YP_002487537.1|  XRE family transcriptional regu...  95.5    2e-18
gi|184201232|ref|YP_001855439.1|  Xre family DNA-binding protein ...  95.5    2e-18
gi|313837173|gb|EFS74887.1|  helix-turn-helix protein [Propioniba...  94.7    4e-18
gi|332670075|ref|YP_004453083.1|  helix-turn-helix domain-contain...  94.7    4e-18
gi|50842492|ref|YP_055719.1|  transcriptional regulator [Propioni...  94.7    4e-18
gi|269127509|ref|YP_003300879.1|  XRE family transcriptional regu...  94.4    5e-18
gi|334336752|ref|YP_004541904.1|  helix-turn-helix domain protein...  94.0    6e-18
gi|325068439|ref|ZP_08127112.1|  XRE family transcriptional regul...  94.0    6e-18
gi|336321153|ref|YP_004601121.1|  helix-turn-helix domain-contain...  94.0    7e-18
gi|340775998|gb|EGR98051.1|  DNA-binding helix-turn-helix protein...  93.6    8e-18
gi|256832269|ref|YP_003160996.1|  transcriptional regulator, XRE ...  93.6    9e-18
gi|229820941|ref|YP_002882467.1|  XRE family transcriptional regu...  93.6    9e-18


>gi|254365396|ref|ZP_04981441.1| hypothetical transcriptional regulatory protein [Mycobacterium 
tuberculosis str. Haarlem]
 gi|289553470|ref|ZP_06442680.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|308405959|ref|ZP_07494554.2| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 6 more sequence titles
 Length=118

 Score =  213 bits (543),  Expect = 6e-54, Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL
Sbjct  7    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  66

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
            QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA
Sbjct  67   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  118


>gi|15609882|ref|NP_217261.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15842285|ref|NP_337322.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31793919|ref|NP_856412.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 69 more sequence titles
 Length=112

 Score =  213 bits (542),  Expect = 7e-54, Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL
Sbjct  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
            QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA
Sbjct  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112


>gi|183981984|ref|YP_001850275.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183175310|gb|ACC40420.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=108

 Score =  159 bits (401),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 86/112 (77%), Positives = 94/112 (84%), Gaps = 4/112 (3%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MA+LVREV+GDVLRG R SQGRTLREVSD+ARVSLGYLSEIERGRKEPSSELL+AIC AL
Sbjct  1    MASLVREVIGDVLRGERTSQGRTLREVSDTARVSLGYLSEIERGRKEPSSELLNAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
            Q+PLS VLI AGERMAR ER  +  P    TGATIDA T++VI  V SLAVA
Sbjct  61   QVPLSEVLIGAGERMARDERAIQTAP----TGATIDAGTRLVIPQVASLAVA  108


>gi|118618704|ref|YP_907036.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570814|gb|ABL05565.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=108

 Score =  158 bits (400),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 86/112 (77%), Positives = 94/112 (84%), Gaps = 4/112 (3%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MA+LVREV+GDVLRG R SQGRTLREV D+ARVSLGYLSEIERGRKEPSSELL+AIC AL
Sbjct  1    MASLVREVIGDVLRGERTSQGRTLREVFDTARVSLGYLSEIERGRKEPSSELLNAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
            Q+PLS VLI AGERMAR ER  +  P    TGATIDA T++VI  VVSLAVA
Sbjct  61   QVPLSEVLIGAGERMARDERAIQTAP----TGATIDAGTRLVIPQVVSLAVA  108


>gi|41408954|ref|NP_961790.1| hypothetical protein MAP2856c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118466084|ref|YP_882813.1| DNA-binding protein [Mycobacterium avium 104]
 gi|254776075|ref|ZP_05217591.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41397313|gb|AAS05173.1| hypothetical protein MAP_2856c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118167371|gb|ABK68268.1| DNA-binding protein [Mycobacterium avium 104]
 gi|336458936|gb|EGO37891.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=108

 Score =  157 bits (396),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 93/112 (84%), Gaps = 4/112 (3%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M  LVREV+GDVLR AR +QGRTLREVSD+ARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct  1    MPPLVREVIGDVLREARTTQGRTLREVSDTARVSLGYLSEVERGRKEPSSELLNAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL DAGERMA +ER A A PA    G +IDASTKVVI PV SLA+A
Sbjct  61   DVPLSSVLTDAGERMASEERAAVAAPA----GPSIDASTKVVIPPVASLALA  108


>gi|254821249|ref|ZP_05226250.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950]
Length=116

 Score =  156 bits (395),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 85/116 (74%), Positives = 93/116 (81%), Gaps = 4/116 (3%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M  LVREV+GDVLR AR +QGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct  1    MPPLVREVIGDVLREARTAQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAG----RATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL DAGERMA QER     PAG     A G++ID STKVVI PV SLA+A
Sbjct  61   DVPLSSVLTDAGERMAGQERAHERAPAGVPADAAAGSSIDVSTKVVIPPVASLALA  116


>gi|296171710|ref|ZP_06852903.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295893987|gb|EFG73751.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=112

 Score =  156 bits (394),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 82/112 (74%), Positives = 92/112 (83%), Gaps = 0/112 (0%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M +LVREV+GDVLR ARM+QGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct  1    MPSLVREVIGDVLREARMTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
            ++PLS VLIDAGERMA  ER+     A      +IDA TKVVI PV SLA+A
Sbjct  61   EVPLSSVLIDAGERMAGLERVTHGAVADGVRAPSIDADTKVVIPPVASLAIA  112


>gi|240171180|ref|ZP_04749839.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 
12478]
Length=109

 Score =  155 bits (393),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 87/112 (78%), Positives = 97/112 (87%), Gaps = 3/112 (2%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MA+LVREV+GDVLRGAR SQGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct  1    MASLVREVIGDVLRGARTSQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICEAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
            ++PLS VLI AGER+A +ER ARA P+    GA+ID STKVVI  V SLAVA
Sbjct  61   EVPLSEVLIVAGERLAGEERAARA-PS--VAGASIDVSTKVVIPAVASLAVA  109


>gi|342858389|ref|ZP_08715044.1| DNA-binding protein [Mycobacterium colombiense CECT 3035]
 gi|342134093|gb|EGT87273.1| DNA-binding protein [Mycobacterium colombiense CECT 3035]
Length=108

 Score =  142 bits (357),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 79/112 (71%), Positives = 86/112 (77%), Gaps = 4/112 (3%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M  LVREV+GDVLR AR +QGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct  1    MPPLVREVIGDVLREARTTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL  AGERMA +ER A     G AT      S KVVI PV SLA+A
Sbjct  61   DVPLSSVLTHAGERMASEERAA----VGAATDGASGTSIKVVIPPVASLALA  108


>gi|118467423|ref|YP_887029.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis 
str. MC2 155]
 gi|118168710|gb|ABK69606.1| transcriptional regulator, XRE family protein [Mycobacterium 
smegmatis str. MC2 155]
Length=112

 Score =  141 bits (356),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 81/113 (72%), Positives = 89/113 (79%), Gaps = 2/113 (1%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M AL+REV+GDVLR AR  QGRTLREVSD+ARVSLGYLSE+ERGRKE SSELLSAIC AL
Sbjct  1    MTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLAR-ATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL DAGE MAR+E  AR A     A    IDA+TKVVI P VS+AVA
Sbjct  61   DVPLSRVLTDAGESMARREHDAREAEQVAVANLGRIDAATKVVI-PQVSMAVA  112


>gi|145224569|ref|YP_001135247.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
 gi|315444900|ref|YP_004077779.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|145217055|gb|ABP46459.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK]
 gi|315263203|gb|ADT99944.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
Length=104

 Score =  137 bits (344),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 77/112 (69%), Positives = 87/112 (78%), Gaps = 8/112 (7%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M ALVREV+GDVLR AR+ QGRTLREVSDSARVSLGYLSE+ERGRKE SSELLSAICTAL
Sbjct  1    MTALVREVIGDVLRRARIEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICTAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL +AG+ +A +E         RA    ID +TKVVI  VVS+AVA
Sbjct  61   DVPLSRVLSEAGQELAVEE--------SRAPAPKIDVTTKVVIPQVVSMAVA  104


>gi|108799092|ref|YP_639289.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868207|ref|YP_938159.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126434698|ref|YP_001070389.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108769511|gb|ABG08233.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119694296|gb|ABL91369.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126234498|gb|ABN97898.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
Length=104

 Score =  134 bits (337),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 77/112 (69%), Positives = 85/112 (76%), Gaps = 8/112 (7%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MAAL+REV+GDVLR AR SQGRTLREVSD+ARVSLGYLSE+ERGRKE SSELLSAIC AL
Sbjct  1    MAALLREVIGDVLRRARTSQGRTLREVSDTARVSLGYLSEVERGRKEASSELLSAICGAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL DAGE +A  E  A   P        ID +TKVVI   VS+AVA
Sbjct  61   DVPLSQVLSDAGEELAHLEH-AAGVP-------NIDVTTKVVIPQAVSMAVA  104


>gi|120403388|ref|YP_953217.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii 
PYR-1]
 gi|119956206|gb|ABM13211.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii 
PYR-1]
Length=110

 Score =  134 bits (336),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 78/113 (70%), Positives = 89/113 (79%), Gaps = 4/113 (3%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M  L+REV+GDVLR AR+ QGRTLREVSDSARVSLGYLSE+ERGRKE SSELLSAIC AL
Sbjct  1    MTTLLREVIGDVLRRARVEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICGAL  60

Query  61   QLPLSVVLIDAGERMARQE-RLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL +AG+ MA +E R+A   P G    A ID +TKVVI  VVS+AVA
Sbjct  61   DVPLSRVLSEAGDEMAVEEARVAAPEPIGT---AGIDVTTKVVIPQVVSMAVA  110


>gi|333991134|ref|YP_004523748.1| transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333487102|gb|AEF36494.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=113

 Score =  125 bits (313),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 80/113 (71%), Positives = 90/113 (80%), Gaps = 1/113 (0%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M AL+RE VG+VLR AR +QGRTLREVSDSARVSLGYLSE+ERGRKE SSELL+AIC+AL
Sbjct  1    MTALLRESVGEVLRQARTAQGRTLREVSDSARVSLGYLSEVERGRKEASSELLNAICSAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGAT-IDASTKVVIAPVVSLAVA  112
            Q+PLS VL DAG R+AR ER  RA  A R  G T IDA TKVVI P  ++A A
Sbjct  61   QVPLSDVLFDAGSRLARAERAERAERAVRNPGVTRIDAGTKVVIPPPRAMASA  113


>gi|169630151|ref|YP_001703800.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
 gi|169242118|emb|CAM63146.1| Possible transcriptional regulatory protein [Mycobacterium abscessus]
Length=116

 Score =  122 bits (306),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 72/118 (62%), Positives = 86/118 (73%), Gaps = 8/118 (6%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MA L+RE +GD LR AR  QG+TLREVSDSARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct  1    MALLLREAIGDTLRSARSGQGKTLREVSDSARVSLGYLSEVERGRKEASSELLAAICGAL  60

Query  61   QLPLSVVLIDAGERMARQE------RLARATPAGRATGATIDASTKVVIAPVVSLAVA  112
             +PLS VL +  ER+AR+E        A A+ AG  +G  ID +TKVVI  V ++A A
Sbjct  61   DVPLSQVLSEVSERLARREAPVAASEAALASTAGSLSG--IDVATKVVIPQVRAMAAA  116


>gi|312139364|ref|YP_004006700.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325672755|ref|ZP_08152451.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|311888703|emb|CBH48015.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325556632|gb|EGD26298.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
Length=120

 Score =  107 bits (268),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 55/76 (73%), Positives = 64/76 (85%), Gaps = 0/76 (0%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           MA L+RE +GD LR  R+SQ RTLREVS+SARVSLGYLSEIERGRKE SSELL+AIC AL
Sbjct  1   MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEIERGRKEASSELLAAICDAL  60

Query  61  QLPLSVVLIDAGERMA  76
           ++PLS VL+D  E +A
Sbjct  61  EVPLSEVLVDVSESLA  76


>gi|336117759|ref|YP_004572527.1| putative Xre family DNA binding protein [Microlunatus phosphovorus 
NM-1]
 gi|334685539|dbj|BAK35124.1| putative Xre family DNA binding protein [Microlunatus phosphovorus 
NM-1]
Length=98

 Score =  106 bits (265),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 53/80 (67%), Positives = 65/80 (82%), Gaps = 0/80 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           LVRE++G+ LR  RMSQG+TLREVS  ARVSLGYLSE+ERG+KE SSELL+AIC AL +P
Sbjct  2   LVRELIGESLREERMSQGKTLREVSQGARVSLGYLSEVERGQKEASSELLAAICAALDVP  61

Query  64  LSVVLIDAGERMARQERLAR  83
           LSV+L    E+MA  E+L +
Sbjct  62  LSVILNLVSEKMAAHEQLTQ  81


>gi|226306228|ref|YP_002766188.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229490856|ref|ZP_04384691.1| putative transcriptional regulatory protein [Rhodococcus erythropolis 
SK121]
 gi|226185345|dbj|BAH33449.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis 
PR4]
 gi|229322246|gb|EEN88032.1| putative transcriptional regulatory protein [Rhodococcus erythropolis 
SK121]
Length=126

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 54/79 (69%), Positives = 65/79 (83%), Gaps = 0/79 (0%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           MA L+RE +GD LR  R+SQ RTLREVS+SARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct  1   MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDAL  60

Query  61  QLPLSVVLIDAGERMARQE  79
            +PLS VL+D  E +A ++
Sbjct  61  AVPLSDVLVDVSETLATKK  79


>gi|111023714|ref|YP_706686.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823244|gb|ABG98528.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=128

 Score =  106 bits (264),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 53/76 (70%), Positives = 64/76 (85%), Gaps = 0/76 (0%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           MA L+RE +GD LR  R+SQ RTLREVS+SARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct  1   MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDAL  60

Query  61  QLPLSVVLIDAGERMA  76
           ++PLS VL+D  E ++
Sbjct  61  EVPLSDVLVDVSESLS  76


>gi|226366151|ref|YP_002783934.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226244641|dbj|BAH54989.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
Length=128

 Score =  105 bits (263),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 53/76 (70%), Positives = 63/76 (83%), Gaps = 0/76 (0%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           MA L+RE +GD LR  R+SQ RTLREVS+SARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct  1   MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDAL  60

Query  61  QLPLSVVLIDAGERMA  76
            +PLS VL+D  E ++
Sbjct  61  DVPLSDVLVDVSESLS  76


>gi|289751402|ref|ZP_06510780.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289691989|gb|EFD59418.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=53

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELL  53
           MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELL
Sbjct  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELL  53


>gi|284030929|ref|YP_003380860.1| helix-turn-helix domain-containing protein [Kribbella flavida 
DSM 17836]
 gi|283810222|gb|ADB32061.1| helix-turn-helix domain protein [Kribbella flavida DSM 17836]
Length=94

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 55/84 (66%), Positives = 65/84 (78%), Gaps = 0/84 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           LVR ++GDVLR  R+ QGRTLREVS  ARVSLGYLSE+ERG+KE SSELL+AICTAL +P
Sbjct  3   LVRGLLGDVLRRKRLRQGRTLREVSAEARVSLGYLSEVERGQKEASSELLAAICTALDVP  62

Query  64  LSVVLIDAGERMARQERLARATPA  87
           LS V  +  E +AR+E L  A  A
Sbjct  63  LSTVFAEVSEDLAREEALVLAHRA  86


>gi|317125297|ref|YP_004099409.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043]
 gi|315589385|gb|ADU48682.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043]
Length=99

 Score =  102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  3   ALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQL  62
           AL+R  +GDVLR  R +QGRTLREVS SA VSLGYLSE+ERG KE SSELL++IC AL+L
Sbjct  2   ALLRRELGDVLRERRRAQGRTLREVSASASVSLGYLSEVERGEKEASSELLASICGALEL  61

Query  63  PLSVVLIDAGERMARQERLA  82
           PLS VLID   RMA  E LA
Sbjct  62  PLSQVLIDVSSRMAESEGLA  81


>gi|54025826|ref|YP_120068.1| hypothetical protein nfa38560 [Nocardia farcinica IFM 10152]
 gi|54017334|dbj|BAD58704.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=145

 Score =  101 bits (252),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 59/103 (58%), Positives = 70/103 (68%), Gaps = 0/103 (0%)

Query  4    LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
            L+RE +GD LR AR++Q RTLREVS SARVSLGYLSE+ERGRKE SSELL+AIC AL +P
Sbjct  3    LLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVP  62

Query  64   LSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPV  106
            LS VL D    MA  + +    PA        +A+T    APV
Sbjct  63   LSRVLWDVSTIMAGTDAVPVEEPAATEPTPHEEAATAGQDAPV  105


>gi|308176874|ref|YP_003916280.1| hypothetical protein AARI_10990 [Arthrobacter arilaitensis Re117]
 gi|307744337|emb|CBT75309.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis 
Re117]
Length=106

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 52/79 (66%), Positives = 64/79 (82%), Gaps = 0/79 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           ++R  +GDVLR  R  QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+IC AL++P
Sbjct  3   VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICVALEIP  62

Query  64  LSVVLIDAGERMARQERLA  82
           LSV+L +  ER+A  E +A
Sbjct  63  LSVMLREVSERVALAEGIA  81


>gi|309811275|ref|ZP_07705064.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
 gi|308434757|gb|EFP58600.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
Length=97

 Score = 98.6 bits (244),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 50/76 (66%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           L+RE +GDVLR  R +QGRTLREVS +ARVSLGYLSEIERG KE SSELL+A+C AL+LP
Sbjct  3   LLREELGDVLRSQRQAQGRTLREVSKAARVSLGYLSEIERGEKEASSELLAAVCEALELP  62

Query  64  LSVVLIDAGERMARQE  79
           +S  L    + +AR E
Sbjct  63  MSQTLHLVAQNVARAE  78


>gi|262202131|ref|YP_003273339.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 
43247]
 gi|262085478|gb|ACY21446.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
Length=116

 Score = 98.2 bits (243),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 60/105 (58%), Positives = 72/105 (69%), Gaps = 6/105 (5%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MA L+RE +GD LR  R  QGRTLREVS  ARVSLGYLSE+ERG+KE SSELL+AIC AL
Sbjct  1    MAMLLREALGDSLRRVRTDQGRTLREVSTDARVSLGYLSEVERGQKEASSELLAAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDA--STKVVI  103
             + ++ +L+DAG  M    R    +  G  T A  +A  STKVVI
Sbjct  61   DVEIADLLLDAGNAM----RPVELSGTGFDTPAEAEAGLSTKVVI  101


>gi|119960859|ref|YP_947357.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens 
TC1]
 gi|119947718|gb|ABM06629.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens 
TC1]
Length=113

 Score = 97.1 bits (240),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 49/73 (68%), Positives = 60/73 (83%), Gaps = 0/73 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           ++R  +GDVLR  R  QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+ICTAL +P
Sbjct  3   VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICTALDVP  62

Query  64  LSVVLIDAGERMA  76
           LS +L +  +R+A
Sbjct  63  LSHMLREVSDRVA  75


>gi|269956038|ref|YP_003325827.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica 
DSM 15894]
 gi|269304719|gb|ACZ30269.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica 
DSM 15894]
Length=114

 Score = 97.1 bits (240),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 54/82 (66%), Positives = 65/82 (80%), Gaps = 1/82 (1%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L RE+ GDVLR AR  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct  1   MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLASICEAL  59

Query  61  QLPLSVVLIDAGERMARQERLA  82
            LP+S+VL +  +R+A  E LA
Sbjct  60  DLPMSLVLREVSDRIAIAEGLA  81


>gi|152965455|ref|YP_001361239.1| helix-turn-helix domain-containing protein [Kineococcus radiotolerans 
SRS30216]
 gi|151359972|gb|ABS02975.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216]
Length=179

 Score = 96.7 bits (239),  Expect = 9e-19, Method: Compositional matrix adjust.
 Identities = 61/109 (56%), Positives = 73/109 (67%), Gaps = 5/109 (4%)

Query  4    LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
            ++R  +GDVLR  R  Q RTLREVS +ARVSLGYLSE+ERG+KE SSELL++ICTAL +P
Sbjct  3    VLRRTIGDVLRDERRGQQRTLREVSSTARVSLGYLSEVERGQKEASSELLASICTALDVP  62

Query  64   LSVVLIDAGERMARQERLARATPA-GRATGATIDASTKVVIAPVVSLAV  111
            LS VL +   R+AR+E      PA GR   A     T  V APV  L V
Sbjct  63   LSQVLGEVTRRIAREE----GVPAVGRRYAAEGVVPTPAVEAPVPLLPV  107


>gi|289705933|ref|ZP_06502309.1| helix-turn-helix domain-containing protein [Micrococcus luteus 
SK58]
 gi|289557341|gb|EFD50656.1| helix-turn-helix domain-containing protein [Micrococcus luteus 
SK58]
Length=132

 Score = 96.7 bits (239),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 48/76 (64%), Positives = 59/76 (78%), Gaps = 0/76 (0%)

Query  4    LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
            L+R  +GDVLR  R  QGRTLREVS  ARVSLGYLSE+ERG+KE SSELL++IC AL +P
Sbjct  34   LLRHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKEASSELLASICQALDIP  93

Query  64   LSVVLIDAGERMARQE  79
            LS +L +  +R+  QE
Sbjct  94   LSYLLREVSDRLVEQE  109


>gi|257068234|ref|YP_003154489.1| Helix-turn-helix protein [Brachybacterium faecium DSM 4810]
 gi|256559052|gb|ACU84899.1| Helix-turn-helix protein [Brachybacterium faecium DSM 4810]
Length=101

 Score = 96.3 bits (238),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 55/93 (60%), Positives = 66/93 (71%), Gaps = 2/93 (2%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           L R+ +GDVLR AR SQGRTLR+VS  ARVSLGYLSEIERG+KE SSELL ++  AL LP
Sbjct  3   LFRQELGDVLRDARRSQGRTLRQVSSDARVSLGYLSEIERGQKEASSELLVSVTDALGLP  62

Query  64  LSVVLIDAGERMARQER--LARATPAGRATGAT  94
           LS VL +  +R+A  E+  +    P G A G T
Sbjct  63  LSFVLREVSDRIAIAEKVTIPDTVPEGLADGTT  95


>gi|239917249|ref|YP_002956807.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
 gi|281414274|ref|ZP_06246016.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
 gi|239838456|gb|ACS30253.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
Length=101

 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 48/76 (64%), Positives = 59/76 (78%), Gaps = 0/76 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           L+R  +GDVLR  R  QGRTLREVS  ARVSLGYLSE+ERG+KE SSELL++IC AL +P
Sbjct  3   LLRHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKEASSELLASICQALDIP  62

Query  64  LSVVLIDAGERMARQE  79
           LS +L +  +R+  QE
Sbjct  63  LSYLLREVSDRLVEQE  78


>gi|163839475|ref|YP_001623880.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
 gi|162952951|gb|ABY22466.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
Length=144

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 46/73 (64%), Positives = 60/73 (83%), Gaps = 0/73 (0%)

Query  4    LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
            ++R  +GDVLR  R  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELLS+IC+AL +P
Sbjct  35   VLRHEIGDVLRDLRQRQGRTLREVSHNARVSLGYLSEVERGQKEASSELLSSICSALDVP  94

Query  64   LSVVLIDAGERMA  76
             S++L +  +R+A
Sbjct  95   FSLMLREVSDRLA  107


>gi|256379796|ref|YP_003103456.1| helix-turn-helix domain-containing protein [Actinosynnema mirum 
DSM 43827]
 gi|255924099|gb|ACU39610.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827]
Length=138

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 49/68 (73%), Positives = 57/68 (84%), Gaps = 0/68 (0%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L+RE +GD LR AR +Q RTLREVS +ARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct  1   MTVLLREAIGDRLRHARTTQRRTLREVSRTARVSLGYLSEVERGRKEASSELLAAICDAL  60

Query  61  QLPLSVVL  68
           +LPLS +L
Sbjct  61  ELPLSELL  68


>gi|116670018|ref|YP_830951.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610127|gb|ABK02851.1| transcriptional regulator, XRE family [Arthrobacter sp. FB24]
Length=116

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 48/73 (66%), Positives = 60/73 (83%), Gaps = 0/73 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           ++R  +GDVLR  R  QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+IC+AL +P
Sbjct  3   VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVP  62

Query  64  LSVVLIDAGERMA  76
           LS +L +  +R+A
Sbjct  63  LSSMLREVSDRVA  75


>gi|296129386|ref|YP_003636636.1| XRE family transcriptional regulator [Cellulomonas flavigena 
DSM 20109]
 gi|296021201|gb|ADG74437.1| transcriptional regulator, XRE family [Cellulomonas flavigena 
DSM 20109]
Length=120

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 53/81 (66%), Positives = 64/81 (80%), Gaps = 1/81 (1%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L RE+ GDVLR AR  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELLS+IC AL
Sbjct  1   MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLSSICDAL  59

Query  61  QLPLSVVLIDAGERMARQERL  81
            +P+S+VL +  +R+A  E L
Sbjct  60  DVPMSLVLREVSDRVAVAEGL  80


>gi|343927013|ref|ZP_08766501.1| putative Xre family DNA-binding protein [Gordonia alkanivorans 
NBRC 16433]
 gi|343763071|dbj|GAA13427.1| putative Xre family DNA-binding protein [Gordonia alkanivorans 
NBRC 16433]
Length=112

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 58/103 (57%), Positives = 70/103 (68%), Gaps = 6/103 (5%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            MA L+RE +GD LR  R  QGRTLREVS  ARVSLGYLSE+ERG+KE SSELL+AIC AL
Sbjct  1    MAMLLREALGDSLRRVRTQQGRTLREVSTGARVSLGYLSEVERGQKEASSELLAAICDAL  60

Query  61   QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVI  103
             + ++ +L+D G  M   E +A   P     G T   +TKVVI
Sbjct  61   DVEIADLLLDVGHAMRPAETVA---PEVAEAGLT---ATKVVI  97


>gi|220912228|ref|YP_002487537.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus 
A6]
 gi|325962842|ref|YP_004240748.1| hypothetical protein Asphe3_14400 [Arthrobacter phenanthrenivorans 
Sphe3]
 gi|219859106|gb|ACL39448.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus 
A6]
 gi|323468929|gb|ADX72614.1| Helix-turn-helix protein [Arthrobacter phenanthrenivorans Sphe3]
Length=119

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 48/73 (66%), Positives = 60/73 (83%), Gaps = 0/73 (0%)

Query  4   LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
           ++R  +GDVLR  R  QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+IC+AL +P
Sbjct  3   VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVP  62

Query  64  LSVVLIDAGERMA  76
           LS +L +  +R+A
Sbjct  63  LSSMLREVSDRVA  75


>gi|184201232|ref|YP_001855439.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201]
 gi|183581462|dbj|BAG29933.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201]
Length=110

 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 47/77 (62%), Positives = 62/77 (81%), Gaps = 0/77 (0%)

Query  3   ALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQL  62
            ++R+ +G+VLR  R  QGRTLREVS SARVSLGYLSE+ERG+KE SSELL++ICTAL +
Sbjct  2   GVLRQEIGEVLRSVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLASICTALDI  61

Query  63  PLSVVLIDAGERMARQE  79
           P+S +L +  +R+A  E
Sbjct  62  PMSQMLREVADRLAYAE  78


>gi|313837173|gb|EFS74887.1| helix-turn-helix protein [Propionibacterium acnes HL037PA2]
 gi|314927806|gb|EFS91637.1| helix-turn-helix protein [Propionibacterium acnes HL044PA1]
 gi|314971945|gb|EFT16043.1| helix-turn-helix protein [Propionibacterium acnes HL037PA3]
 gi|328907270|gb|EGG27036.1| transcriptional regulator [Propionibacterium humerusii P08]
Length=91

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 48/78 (62%), Positives = 61/78 (79%), Gaps = 0/78 (0%)

Query  2   AALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQ  61
           +AL+REV+G+ LR  R  QGRTLREVS +ARVSLGYLSE+ERG+KE SSEL+ AICTAL 
Sbjct  3   SALLREVLGESLREQRFGQGRTLREVSSAARVSLGYLSEVERGQKEASSELILAICTALD  62

Query  62  LPLSVVLIDAGERMARQE  79
           LP S ++    ++M + E
Sbjct  63  LPQSELMRIVSDKMFKNE  80


>gi|332670075|ref|YP_004453083.1| helix-turn-helix domain-containing protein [Cellulomonas fimi 
ATCC 484]
 gi|332339113|gb|AEE45696.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
Length=113

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 52/81 (65%), Positives = 64/81 (80%), Gaps = 1/81 (1%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L RE+ GDVLR AR  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct  1   MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLNSICEAL  59

Query  61  QLPLSVVLIDAGERMARQERL  81
            +P+S+VL +  +R+A  E L
Sbjct  60  DVPMSLVLREVSDRVAVAEGL  80


>gi|50842492|ref|YP_055719.1| transcriptional regulator [Propionibacterium acnes KPA171202]
 gi|282854043|ref|ZP_06263380.1| DNA-binding protein [Propionibacterium acnes J139]
 gi|289425252|ref|ZP_06427029.1| DNA-binding protein [Propionibacterium acnes SK187]
 78 more sequence titles
 Length=91

 Score = 94.7 bits (234),  Expect = 4e-18, Method: Compositional matrix adjust.
 Identities = 47/78 (61%), Positives = 62/78 (80%), Gaps = 0/78 (0%)

Query  2   AALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQ  61
           + L+RE++G+ LR  R +QGRTLREVS +ARVSLGYLSE+ERG+KE SSEL+SAICTAL 
Sbjct  3   STLLREMLGESLREQRFAQGRTLREVSSAARVSLGYLSEVERGQKEASSELISAICTALD  62

Query  62  LPLSVVLIDAGERMARQE  79
           LP S ++    ++M + E
Sbjct  63  LPQSDLMRIVSDKMLKNE  80


>gi|269127509|ref|YP_003300879.1| XRE family transcriptional regulator [Thermomonospora curvata 
DSM 43183]
 gi|268312467|gb|ACY98841.1| transcriptional regulator, XRE family [Thermomonospora curvata 
DSM 43183]
Length=127

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 55/101 (55%), Positives = 74/101 (74%), Gaps = 5/101 (4%)

Query  4    LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
            L+R+++GDVLR  R+ QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL +P
Sbjct  3    LLRQLLGDVLRQLRLRQGRTLREVSAAARVSLGYLSEVERGQKEASSELLASICKALGVP  62

Query  64   LSVVLIDAGERMA----RQER-LARATPAGRATGATIDAST  99
            LS VL +  +++A    +QE  +A A PA    G  ++  T
Sbjct  63   LSHVLREVADQLALAELQQEPVMAGAPPAHERLGEGLERET  103


>gi|334336752|ref|YP_004541904.1| helix-turn-helix domain protein [Isoptericola variabilis 225]
 gi|334107120|gb|AEG44010.1| helix-turn-helix domain protein [Isoptericola variabilis 225]
Length=115

 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 52/81 (65%), Positives = 64/81 (80%), Gaps = 1/81 (1%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L RE+ GDVLR AR  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct  1   MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLASICEAL  59

Query  61  QLPLSVVLIDAGERMARQERL  81
            +P+S+VL +  +R+A  E L
Sbjct  60  DVPMSLVLREVSDRIAVAEGL  80


>gi|325068439|ref|ZP_08127112.1| XRE family transcriptional regulator [Actinomyces oris K20]
 gi|326773690|ref|ZP_08232973.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505]
 gi|343521698|ref|ZP_08758664.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 
175 str. F0384]
 gi|326636920|gb|EGE37823.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505]
 gi|343401107|gb|EGV13613.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 
175 str. F0384]
Length=136

 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 47/73 (65%), Positives = 59/73 (81%), Gaps = 0/73 (0%)

Query  4    LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP  63
            ++R  +G+VLRG R  QGRTLREVS  ARVSLGYLSE+ERG+KE SSELL++IC AL  P
Sbjct  40   VLRREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELLASICQALDAP  99

Query  64   LSVVLIDAGERMA  76
            LS+VL +  +R+A
Sbjct  100  LSMVLREVSDRIA  112


>gi|336321153|ref|YP_004601121.1| helix-turn-helix domain-containing protein [Cellvibrio gilvus 
ATCC 13127]
 gi|336104734|gb|AEI12553.1| helix-turn-helix domain protein [Cellvibrio gilvus ATCC 13127]
Length=163

 Score = 94.0 bits (232),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 52/81 (65%), Positives = 63/81 (78%), Gaps = 1/81 (1%)

Query  1    MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
            M  L RE+ GDVLR AR  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL +IC AL
Sbjct  48   MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLHSICEAL  106

Query  61   QLPLSVVLIDAGERMARQERL  81
             +P+S+VL +  +R+A  E L
Sbjct  107  DVPMSLVLREVSDRVAVAEGL  127


>gi|340775998|gb|EGR98051.1| DNA-binding helix-turn-helix protein [Propionibacterium acnes 
SK182B-JCVI]
Length=91

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 47/78 (61%), Positives = 61/78 (79%), Gaps = 0/78 (0%)

Query  2   AALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQ  61
           + L+REV+G+ LR  R +QGRTLREVS +ARVSLGYLSE+ERG+KE SSEL+ AICTAL 
Sbjct  3   STLLREVLGESLREQRFAQGRTLREVSSAARVSLGYLSEVERGQKEASSELILAICTALN  62

Query  62  LPLSVVLIDAGERMARQE  79
           LP S ++    ++M + E
Sbjct  63  LPQSDLMRIISDKMLKNE  80


>gi|256832269|ref|YP_003160996.1| transcriptional regulator, XRE family [Jonesia denitrificans 
DSM 20603]
 gi|256685800|gb|ACV08693.1| transcriptional regulator, XRE family [Jonesia denitrificans 
DSM 20603]
Length=99

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 52/81 (65%), Positives = 62/81 (77%), Gaps = 1/81 (1%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L RE+ GDVLR AR  QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL +IC AL
Sbjct  1   MVVLRREI-GDVLRSARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLGSICDAL  59

Query  61  QLPLSVVLIDAGERMARQERL  81
             PLS++L +  +R+A  E L
Sbjct  60  DTPLSLILREVSDRVAVAEGL  80


>gi|229820941|ref|YP_002882467.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 
12333]
 gi|229566854|gb|ACQ80705.1| transcriptional regulator, XRE family [Beutenbergia cavernae 
DSM 12333]
Length=104

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 49/76 (65%), Positives = 63/76 (83%), Gaps = 1/76 (1%)

Query  1   MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL  60
           M  L RE+ GDVLR AR +QG+TLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct  1   MVVLRREL-GDVLRDARQNQGKTLREVSSAARVSLGYLSEVERGQKEASSELLASICAAL  59

Query  61  QLPLSVVLIDAGERMA  76
           Q+ LS++L +  +R+A
Sbjct  60  QVSLSMILREVSDRIA  75



Lambda     K      H
   0.317    0.129    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128047486336


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40