BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2745c
Length=112
Score E
Sequences producing significant alignments: (Bits) Value
gi|254365396|ref|ZP_04981441.1| hypothetical transcriptional reg... 213 6e-54
gi|15609882|ref|NP_217261.1| transcriptional regulatory protein ... 213 7e-54
gi|183981984|ref|YP_001850275.1| transcriptional regulatory prot... 159 2e-37
gi|118618704|ref|YP_907036.1| transcriptional regulatory protein... 158 2e-37
gi|41408954|ref|NP_961790.1| hypothetical protein MAP2856c [Myco... 157 7e-37
gi|254821249|ref|ZP_05226250.1| DNA-binding protein [Mycobacteri... 156 8e-37
gi|296171710|ref|ZP_06852903.1| transcriptional regulatory prote... 156 1e-36
gi|240171180|ref|ZP_04749839.1| transcriptional regulatory prote... 155 1e-36
gi|342858389|ref|ZP_08715044.1| DNA-binding protein [Mycobacteri... 142 2e-32
gi|118467423|ref|YP_887029.1| XRE family transcriptional regulat... 141 3e-32
gi|145224569|ref|YP_001135247.1| XRE family transcriptional regu... 137 7e-31
gi|108799092|ref|YP_639289.1| XRE family transcriptional regulat... 134 5e-30
gi|120403388|ref|YP_953217.1| XRE family transcriptional regulat... 134 6e-30
gi|333991134|ref|YP_004523748.1| transcriptional regulator [Myco... 125 2e-27
gi|169630151|ref|YP_001703800.1| transcriptional regulator [Myco... 122 2e-26
gi|312139364|ref|YP_004006700.1| transcriptional regulator [Rhod... 107 4e-22
gi|336117759|ref|YP_004572527.1| putative Xre family DNA binding... 106 1e-21
gi|226306228|ref|YP_002766188.1| Xre family DNA-binding protein ... 106 1e-21
gi|111023714|ref|YP_706686.1| transcriptional regulator [Rhodoco... 106 1e-21
gi|226366151|ref|YP_002783934.1| Xre family DNA-binding protein ... 105 2e-21
gi|289751402|ref|ZP_06510780.1| transcriptional regulator [Mycob... 103 1e-20
gi|284030929|ref|YP_003380860.1| helix-turn-helix domain-contain... 102 2e-20
gi|317125297|ref|YP_004099409.1| helix-turn-helix domain protein... 102 2e-20
gi|54025826|ref|YP_120068.1| hypothetical protein nfa38560 [Noca... 101 4e-20
gi|308176874|ref|YP_003916280.1| hypothetical protein AARI_10990... 101 4e-20
gi|309811275|ref|ZP_07705064.1| DNA-binding helix-turn-helix pro... 98.6 2e-19
gi|262202131|ref|YP_003273339.1| XRE family transcriptional regu... 98.2 3e-19
gi|119960859|ref|YP_947357.1| helix-turn-helix domain-containing... 97.1 8e-19
gi|269956038|ref|YP_003325827.1| XRE family transcriptional regu... 97.1 9e-19
gi|152965455|ref|YP_001361239.1| helix-turn-helix domain-contain... 96.7 9e-19
gi|289705933|ref|ZP_06502309.1| helix-turn-helix domain-containi... 96.7 1e-18
gi|257068234|ref|YP_003154489.1| Helix-turn-helix protein [Brach... 96.3 1e-18
gi|239917249|ref|YP_002956807.1| Helix-turn-helix protein [Micro... 95.9 2e-18
gi|163839475|ref|YP_001623880.1| transcriptional regulator [Reni... 95.5 2e-18
gi|256379796|ref|YP_003103456.1| helix-turn-helix domain-contain... 95.5 2e-18
gi|116670018|ref|YP_830951.1| XRE family transcriptional regulat... 95.5 2e-18
gi|296129386|ref|YP_003636636.1| XRE family transcriptional regu... 95.5 2e-18
gi|343927013|ref|ZP_08766501.1| putative Xre family DNA-binding ... 95.5 2e-18
gi|220912228|ref|YP_002487537.1| XRE family transcriptional regu... 95.5 2e-18
gi|184201232|ref|YP_001855439.1| Xre family DNA-binding protein ... 95.5 2e-18
gi|313837173|gb|EFS74887.1| helix-turn-helix protein [Propioniba... 94.7 4e-18
gi|332670075|ref|YP_004453083.1| helix-turn-helix domain-contain... 94.7 4e-18
gi|50842492|ref|YP_055719.1| transcriptional regulator [Propioni... 94.7 4e-18
gi|269127509|ref|YP_003300879.1| XRE family transcriptional regu... 94.4 5e-18
gi|334336752|ref|YP_004541904.1| helix-turn-helix domain protein... 94.0 6e-18
gi|325068439|ref|ZP_08127112.1| XRE family transcriptional regul... 94.0 6e-18
gi|336321153|ref|YP_004601121.1| helix-turn-helix domain-contain... 94.0 7e-18
gi|340775998|gb|EGR98051.1| DNA-binding helix-turn-helix protein... 93.6 8e-18
gi|256832269|ref|YP_003160996.1| transcriptional regulator, XRE ... 93.6 9e-18
gi|229820941|ref|YP_002882467.1| XRE family transcriptional regu... 93.6 9e-18
>gi|254365396|ref|ZP_04981441.1| hypothetical transcriptional regulatory protein [Mycobacterium
tuberculosis str. Haarlem]
gi|289553470|ref|ZP_06442680.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
gi|308405959|ref|ZP_07494554.2| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
6 more sequence titles
Length=118
Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL
Sbjct 7 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 66
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA
Sbjct 67 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 118
>gi|15609882|ref|NP_217261.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15842285|ref|NP_337322.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
gi|31793919|ref|NP_856412.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
69 more sequence titles
Length=112
Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL
Sbjct 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA
Sbjct 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
>gi|183981984|ref|YP_001850275.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183175310|gb|ACC40420.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=108
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/112 (77%), Positives = 94/112 (84%), Gaps = 4/112 (3%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA+LVREV+GDVLRG R SQGRTLREVSD+ARVSLGYLSEIERGRKEPSSELL+AIC AL
Sbjct 1 MASLVREVIGDVLRGERTSQGRTLREVSDTARVSLGYLSEIERGRKEPSSELLNAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
Q+PLS VLI AGERMAR ER + P TGATIDA T++VI V SLAVA
Sbjct 61 QVPLSEVLIGAGERMARDERAIQTAP----TGATIDAGTRLVIPQVASLAVA 108
>gi|118618704|ref|YP_907036.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118570814|gb|ABL05565.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=108
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/112 (77%), Positives = 94/112 (84%), Gaps = 4/112 (3%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA+LVREV+GDVLRG R SQGRTLREV D+ARVSLGYLSEIERGRKEPSSELL+AIC AL
Sbjct 1 MASLVREVIGDVLRGERTSQGRTLREVFDTARVSLGYLSEIERGRKEPSSELLNAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
Q+PLS VLI AGERMAR ER + P TGATIDA T++VI VVSLAVA
Sbjct 61 QVPLSEVLIGAGERMARDERAIQTAP----TGATIDAGTRLVIPQVVSLAVA 108
>gi|41408954|ref|NP_961790.1| hypothetical protein MAP2856c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118466084|ref|YP_882813.1| DNA-binding protein [Mycobacterium avium 104]
gi|254776075|ref|ZP_05217591.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|41397313|gb|AAS05173.1| hypothetical protein MAP_2856c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118167371|gb|ABK68268.1| DNA-binding protein [Mycobacterium avium 104]
gi|336458936|gb|EGO37891.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=108
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 93/112 (84%), Gaps = 4/112 (3%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M LVREV+GDVLR AR +QGRTLREVSD+ARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct 1 MPPLVREVIGDVLREARTTQGRTLREVSDTARVSLGYLSEVERGRKEPSSELLNAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL DAGERMA +ER A A PA G +IDASTKVVI PV SLA+A
Sbjct 61 DVPLSSVLTDAGERMASEERAAVAAPA----GPSIDASTKVVIPPVASLALA 108
>gi|254821249|ref|ZP_05226250.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950]
Length=116
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/116 (74%), Positives = 93/116 (81%), Gaps = 4/116 (3%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M LVREV+GDVLR AR +QGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct 1 MPPLVREVIGDVLREARTAQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAG----RATGATIDASTKVVIAPVVSLAVA 112
+PLS VL DAGERMA QER PAG A G++ID STKVVI PV SLA+A
Sbjct 61 DVPLSSVLTDAGERMAGQERAHERAPAGVPADAAAGSSIDVSTKVVIPPVASLALA 116
>gi|296171710|ref|ZP_06852903.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893987|gb|EFG73751.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=112
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/112 (74%), Positives = 92/112 (83%), Gaps = 0/112 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M +LVREV+GDVLR ARM+QGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct 1 MPSLVREVIGDVLREARMTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
++PLS VLIDAGERMA ER+ A +IDA TKVVI PV SLA+A
Sbjct 61 EVPLSSVLIDAGERMAGLERVTHGAVADGVRAPSIDADTKVVIPPVASLAIA 112
>gi|240171180|ref|ZP_04749839.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=109
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/112 (78%), Positives = 97/112 (87%), Gaps = 3/112 (2%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA+LVREV+GDVLRGAR SQGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct 1 MASLVREVIGDVLRGARTSQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICEAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
++PLS VLI AGER+A +ER ARA P+ GA+ID STKVVI V SLAVA
Sbjct 61 EVPLSEVLIVAGERLAGEERAARA-PS--VAGASIDVSTKVVIPAVASLAVA 109
>gi|342858389|ref|ZP_08715044.1| DNA-binding protein [Mycobacterium colombiense CECT 3035]
gi|342134093|gb|EGT87273.1| DNA-binding protein [Mycobacterium colombiense CECT 3035]
Length=108
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/112 (71%), Positives = 86/112 (77%), Gaps = 4/112 (3%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M LVREV+GDVLR AR +QGRTLREVSDSARVSLGYLSE+ERGRKEPSSELL+AIC AL
Sbjct 1 MPPLVREVIGDVLREARTTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL AGERMA +ER A G AT S KVVI PV SLA+A
Sbjct 61 DVPLSSVLTHAGERMASEERAA----VGAATDGASGTSIKVVIPPVASLALA 108
>gi|118467423|ref|YP_887029.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis
str. MC2 155]
gi|118168710|gb|ABK69606.1| transcriptional regulator, XRE family protein [Mycobacterium
smegmatis str. MC2 155]
Length=112
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/113 (72%), Positives = 89/113 (79%), Gaps = 2/113 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M AL+REV+GDVLR AR QGRTLREVSD+ARVSLGYLSE+ERGRKE SSELLSAIC AL
Sbjct 1 MTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLAR-ATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL DAGE MAR+E AR A A IDA+TKVVI P VS+AVA
Sbjct 61 DVPLSRVLTDAGESMARREHDAREAEQVAVANLGRIDAATKVVI-PQVSMAVA 112
>gi|145224569|ref|YP_001135247.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|315444900|ref|YP_004077779.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
gi|145217055|gb|ABP46459.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK]
gi|315263203|gb|ADT99944.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
Length=104
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/112 (69%), Positives = 87/112 (78%), Gaps = 8/112 (7%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M ALVREV+GDVLR AR+ QGRTLREVSDSARVSLGYLSE+ERGRKE SSELLSAICTAL
Sbjct 1 MTALVREVIGDVLRRARIEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICTAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL +AG+ +A +E RA ID +TKVVI VVS+AVA
Sbjct 61 DVPLSRVLSEAGQELAVEE--------SRAPAPKIDVTTKVVIPQVVSMAVA 104
>gi|108799092|ref|YP_639289.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
gi|119868207|ref|YP_938159.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
gi|126434698|ref|YP_001070389.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
gi|108769511|gb|ABG08233.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
gi|119694296|gb|ABL91369.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
gi|126234498|gb|ABN97898.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
Length=104
Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/112 (69%), Positives = 85/112 (76%), Gaps = 8/112 (7%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MAAL+REV+GDVLR AR SQGRTLREVSD+ARVSLGYLSE+ERGRKE SSELLSAIC AL
Sbjct 1 MAALLREVIGDVLRRARTSQGRTLREVSDTARVSLGYLSEVERGRKEASSELLSAICGAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL DAGE +A E A P ID +TKVVI VS+AVA
Sbjct 61 DVPLSQVLSDAGEELAHLEH-AAGVP-------NIDVTTKVVIPQAVSMAVA 104
>gi|120403388|ref|YP_953217.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119956206|gb|ABM13211.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
PYR-1]
Length=110
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/113 (70%), Positives = 89/113 (79%), Gaps = 4/113 (3%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L+REV+GDVLR AR+ QGRTLREVSDSARVSLGYLSE+ERGRKE SSELLSAIC AL
Sbjct 1 MTTLLREVIGDVLRRARVEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICGAL 60
Query 61 QLPLSVVLIDAGERMARQE-RLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL +AG+ MA +E R+A P G A ID +TKVVI VVS+AVA
Sbjct 61 DVPLSRVLSEAGDEMAVEEARVAAPEPIGT---AGIDVTTKVVIPQVVSMAVA 110
>gi|333991134|ref|YP_004523748.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333487102|gb|AEF36494.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=113
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/113 (71%), Positives = 90/113 (80%), Gaps = 1/113 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M AL+RE VG+VLR AR +QGRTLREVSDSARVSLGYLSE+ERGRKE SSELL+AIC+AL
Sbjct 1 MTALLRESVGEVLRQARTAQGRTLREVSDSARVSLGYLSEVERGRKEASSELLNAICSAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGAT-IDASTKVVIAPVVSLAVA 112
Q+PLS VL DAG R+AR ER RA A R G T IDA TKVVI P ++A A
Sbjct 61 QVPLSDVLFDAGSRLARAERAERAERAVRNPGVTRIDAGTKVVIPPPRAMASA 113
>gi|169630151|ref|YP_001703800.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
gi|169242118|emb|CAM63146.1| Possible transcriptional regulatory protein [Mycobacterium abscessus]
Length=116
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/118 (62%), Positives = 86/118 (73%), Gaps = 8/118 (6%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR AR QG+TLREVSDSARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct 1 MALLLREAIGDTLRSARSGQGKTLREVSDSARVSLGYLSEVERGRKEASSELLAAICGAL 60
Query 61 QLPLSVVLIDAGERMARQE------RLARATPAGRATGATIDASTKVVIAPVVSLAVA 112
+PLS VL + ER+AR+E A A+ AG +G ID +TKVVI V ++A A
Sbjct 61 DVPLSQVLSEVSERLARREAPVAASEAALASTAGSLSG--IDVATKVVIPQVRAMAAA 116
>gi|312139364|ref|YP_004006700.1| transcriptional regulator [Rhodococcus equi 103S]
gi|325672755|ref|ZP_08152451.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|311888703|emb|CBH48015.1| putative transcriptional regulator [Rhodococcus equi 103S]
gi|325556632|gb|EGD26298.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
Length=120
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/76 (73%), Positives = 64/76 (85%), Gaps = 0/76 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR R+SQ RTLREVS+SARVSLGYLSEIERGRKE SSELL+AIC AL
Sbjct 1 MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEIERGRKEASSELLAAICDAL 60
Query 61 QLPLSVVLIDAGERMA 76
++PLS VL+D E +A
Sbjct 61 EVPLSEVLVDVSESLA 76
>gi|336117759|ref|YP_004572527.1| putative Xre family DNA binding protein [Microlunatus phosphovorus
NM-1]
gi|334685539|dbj|BAK35124.1| putative Xre family DNA binding protein [Microlunatus phosphovorus
NM-1]
Length=98
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/80 (67%), Positives = 65/80 (82%), Gaps = 0/80 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
LVRE++G+ LR RMSQG+TLREVS ARVSLGYLSE+ERG+KE SSELL+AIC AL +P
Sbjct 2 LVRELIGESLREERMSQGKTLREVSQGARVSLGYLSEVERGQKEASSELLAAICAALDVP 61
Query 64 LSVVLIDAGERMARQERLAR 83
LSV+L E+MA E+L +
Sbjct 62 LSVILNLVSEKMAAHEQLTQ 81
>gi|226306228|ref|YP_002766188.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
gi|229490856|ref|ZP_04384691.1| putative transcriptional regulatory protein [Rhodococcus erythropolis
SK121]
gi|226185345|dbj|BAH33449.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
PR4]
gi|229322246|gb|EEN88032.1| putative transcriptional regulatory protein [Rhodococcus erythropolis
SK121]
Length=126
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/79 (69%), Positives = 65/79 (83%), Gaps = 0/79 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR R+SQ RTLREVS+SARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct 1 MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDAL 60
Query 61 QLPLSVVLIDAGERMARQE 79
+PLS VL+D E +A ++
Sbjct 61 AVPLSDVLVDVSETLATKK 79
>gi|111023714|ref|YP_706686.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110823244|gb|ABG98528.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length=128
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/76 (70%), Positives = 64/76 (85%), Gaps = 0/76 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR R+SQ RTLREVS+SARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct 1 MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDAL 60
Query 61 QLPLSVVLIDAGERMA 76
++PLS VL+D E ++
Sbjct 61 EVPLSDVLVDVSESLS 76
>gi|226366151|ref|YP_002783934.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
gi|226244641|dbj|BAH54989.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
Length=128
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/76 (70%), Positives = 63/76 (83%), Gaps = 0/76 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR R+SQ RTLREVS+SARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct 1 MALLLREAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDAL 60
Query 61 QLPLSVVLIDAGERMA 76
+PLS VL+D E ++
Sbjct 61 DVPLSDVLVDVSESLS 76
>gi|289751402|ref|ZP_06510780.1| transcriptional regulator [Mycobacterium tuberculosis T92]
gi|289691989|gb|EFD59418.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=53
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELL 53
MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELL
Sbjct 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELL 53
>gi|284030929|ref|YP_003380860.1| helix-turn-helix domain-containing protein [Kribbella flavida
DSM 17836]
gi|283810222|gb|ADB32061.1| helix-turn-helix domain protein [Kribbella flavida DSM 17836]
Length=94
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/84 (66%), Positives = 65/84 (78%), Gaps = 0/84 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
LVR ++GDVLR R+ QGRTLREVS ARVSLGYLSE+ERG+KE SSELL+AICTAL +P
Sbjct 3 LVRGLLGDVLRRKRLRQGRTLREVSAEARVSLGYLSEVERGQKEASSELLAAICTALDVP 62
Query 64 LSVVLIDAGERMARQERLARATPA 87
LS V + E +AR+E L A A
Sbjct 63 LSTVFAEVSEDLAREEALVLAHRA 86
>gi|317125297|ref|YP_004099409.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043]
gi|315589385|gb|ADU48682.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043]
Length=99
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 63/80 (79%), Gaps = 0/80 (0%)
Query 3 ALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQL 62
AL+R +GDVLR R +QGRTLREVS SA VSLGYLSE+ERG KE SSELL++IC AL+L
Sbjct 2 ALLRRELGDVLRERRRAQGRTLREVSASASVSLGYLSEVERGEKEASSELLASICGALEL 61
Query 63 PLSVVLIDAGERMARQERLA 82
PLS VLID RMA E LA
Sbjct 62 PLSQVLIDVSSRMAESEGLA 81
>gi|54025826|ref|YP_120068.1| hypothetical protein nfa38560 [Nocardia farcinica IFM 10152]
gi|54017334|dbj|BAD58704.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=145
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/103 (58%), Positives = 70/103 (68%), Gaps = 0/103 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
L+RE +GD LR AR++Q RTLREVS SARVSLGYLSE+ERGRKE SSELL+AIC AL +P
Sbjct 3 LLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVP 62
Query 64 LSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVIAPV 106
LS VL D MA + + PA +A+T APV
Sbjct 63 LSRVLWDVSTIMAGTDAVPVEEPAATEPTPHEEAATAGQDAPV 105
>gi|308176874|ref|YP_003916280.1| hypothetical protein AARI_10990 [Arthrobacter arilaitensis Re117]
gi|307744337|emb|CBT75309.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis
Re117]
Length=106
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/79 (66%), Positives = 64/79 (82%), Gaps = 0/79 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +GDVLR R QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+IC AL++P
Sbjct 3 VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICVALEIP 62
Query 64 LSVVLIDAGERMARQERLA 82
LSV+L + ER+A E +A
Sbjct 63 LSVMLREVSERVALAEGIA 81
>gi|309811275|ref|ZP_07705064.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
gi|308434757|gb|EFP58600.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
Length=97
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/76 (66%), Positives = 60/76 (79%), Gaps = 0/76 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
L+RE +GDVLR R +QGRTLREVS +ARVSLGYLSEIERG KE SSELL+A+C AL+LP
Sbjct 3 LLREELGDVLRSQRQAQGRTLREVSKAARVSLGYLSEIERGEKEASSELLAAVCEALELP 62
Query 64 LSVVLIDAGERMARQE 79
+S L + +AR E
Sbjct 63 MSQTLHLVAQNVARAE 78
>gi|262202131|ref|YP_003273339.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
43247]
gi|262085478|gb|ACY21446.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
Length=116
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/105 (58%), Positives = 72/105 (69%), Gaps = 6/105 (5%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR R QGRTLREVS ARVSLGYLSE+ERG+KE SSELL+AIC AL
Sbjct 1 MAMLLREALGDSLRRVRTDQGRTLREVSTDARVSLGYLSEVERGQKEASSELLAAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDA--STKVVI 103
+ ++ +L+DAG M R + G T A +A STKVVI
Sbjct 61 DVEIADLLLDAGNAM----RPVELSGTGFDTPAEAEAGLSTKVVI 101
>gi|119960859|ref|YP_947357.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens
TC1]
gi|119947718|gb|ABM06629.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
TC1]
Length=113
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/73 (68%), Positives = 60/73 (83%), Gaps = 0/73 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +GDVLR R QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+ICTAL +P
Sbjct 3 VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICTALDVP 62
Query 64 LSVVLIDAGERMA 76
LS +L + +R+A
Sbjct 63 LSHMLREVSDRVA 75
>gi|269956038|ref|YP_003325827.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
DSM 15894]
gi|269304719|gb|ACZ30269.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica
DSM 15894]
Length=114
Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/82 (66%), Positives = 65/82 (80%), Gaps = 1/82 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct 1 MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLASICEAL 59
Query 61 QLPLSVVLIDAGERMARQERLA 82
LP+S+VL + +R+A E LA
Sbjct 60 DLPMSLVLREVSDRIAIAEGLA 81
>gi|152965455|ref|YP_001361239.1| helix-turn-helix domain-containing protein [Kineococcus radiotolerans
SRS30216]
gi|151359972|gb|ABS02975.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216]
Length=179
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/109 (56%), Positives = 73/109 (67%), Gaps = 5/109 (4%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +GDVLR R Q RTLREVS +ARVSLGYLSE+ERG+KE SSELL++ICTAL +P
Sbjct 3 VLRRTIGDVLRDERRGQQRTLREVSSTARVSLGYLSEVERGQKEASSELLASICTALDVP 62
Query 64 LSVVLIDAGERMARQERLARATPA-GRATGATIDASTKVVIAPVVSLAV 111
LS VL + R+AR+E PA GR A T V APV L V
Sbjct 63 LSQVLGEVTRRIAREE----GVPAVGRRYAAEGVVPTPAVEAPVPLLPV 107
>gi|289705933|ref|ZP_06502309.1| helix-turn-helix domain-containing protein [Micrococcus luteus
SK58]
gi|289557341|gb|EFD50656.1| helix-turn-helix domain-containing protein [Micrococcus luteus
SK58]
Length=132
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/76 (64%), Positives = 59/76 (78%), Gaps = 0/76 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
L+R +GDVLR R QGRTLREVS ARVSLGYLSE+ERG+KE SSELL++IC AL +P
Sbjct 34 LLRHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKEASSELLASICQALDIP 93
Query 64 LSVVLIDAGERMARQE 79
LS +L + +R+ QE
Sbjct 94 LSYLLREVSDRLVEQE 109
>gi|257068234|ref|YP_003154489.1| Helix-turn-helix protein [Brachybacterium faecium DSM 4810]
gi|256559052|gb|ACU84899.1| Helix-turn-helix protein [Brachybacterium faecium DSM 4810]
Length=101
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/93 (60%), Positives = 66/93 (71%), Gaps = 2/93 (2%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
L R+ +GDVLR AR SQGRTLR+VS ARVSLGYLSEIERG+KE SSELL ++ AL LP
Sbjct 3 LFRQELGDVLRDARRSQGRTLRQVSSDARVSLGYLSEIERGQKEASSELLVSVTDALGLP 62
Query 64 LSVVLIDAGERMARQER--LARATPAGRATGAT 94
LS VL + +R+A E+ + P G A G T
Sbjct 63 LSFVLREVSDRIAIAEKVTIPDTVPEGLADGTT 95
>gi|239917249|ref|YP_002956807.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
gi|281414274|ref|ZP_06246016.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
gi|239838456|gb|ACS30253.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
Length=101
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/76 (64%), Positives = 59/76 (78%), Gaps = 0/76 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
L+R +GDVLR R QGRTLREVS ARVSLGYLSE+ERG+KE SSELL++IC AL +P
Sbjct 3 LLRHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKEASSELLASICQALDIP 62
Query 64 LSVVLIDAGERMARQE 79
LS +L + +R+ QE
Sbjct 63 LSYLLREVSDRLVEQE 78
>gi|163839475|ref|YP_001623880.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
gi|162952951|gb|ABY22466.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
Length=144
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (64%), Positives = 60/73 (83%), Gaps = 0/73 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +GDVLR R QGRTLREVS +ARVSLGYLSE+ERG+KE SSELLS+IC+AL +P
Sbjct 35 VLRHEIGDVLRDLRQRQGRTLREVSHNARVSLGYLSEVERGQKEASSELLSSICSALDVP 94
Query 64 LSVVLIDAGERMA 76
S++L + +R+A
Sbjct 95 FSLMLREVSDRLA 107
>gi|256379796|ref|YP_003103456.1| helix-turn-helix domain-containing protein [Actinosynnema mirum
DSM 43827]
gi|255924099|gb|ACU39610.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827]
Length=138
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/68 (73%), Positives = 57/68 (84%), Gaps = 0/68 (0%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L+RE +GD LR AR +Q RTLREVS +ARVSLGYLSE+ERGRKE SSELL+AIC AL
Sbjct 1 MTVLLREAIGDRLRHARTTQRRTLREVSRTARVSLGYLSEVERGRKEASSELLAAICDAL 60
Query 61 QLPLSVVL 68
+LPLS +L
Sbjct 61 ELPLSELL 68
>gi|116670018|ref|YP_830951.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
gi|116610127|gb|ABK02851.1| transcriptional regulator, XRE family [Arthrobacter sp. FB24]
Length=116
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/73 (66%), Positives = 60/73 (83%), Gaps = 0/73 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +GDVLR R QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+IC+AL +P
Sbjct 3 VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVP 62
Query 64 LSVVLIDAGERMA 76
LS +L + +R+A
Sbjct 63 LSSMLREVSDRVA 75
>gi|296129386|ref|YP_003636636.1| XRE family transcriptional regulator [Cellulomonas flavigena
DSM 20109]
gi|296021201|gb|ADG74437.1| transcriptional regulator, XRE family [Cellulomonas flavigena
DSM 20109]
Length=120
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/81 (66%), Positives = 64/81 (80%), Gaps = 1/81 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR QGRTLREVS +ARVSLGYLSE+ERG+KE SSELLS+IC AL
Sbjct 1 MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLSSICDAL 59
Query 61 QLPLSVVLIDAGERMARQERL 81
+P+S+VL + +R+A E L
Sbjct 60 DVPMSLVLREVSDRVAVAEGL 80
>gi|343927013|ref|ZP_08766501.1| putative Xre family DNA-binding protein [Gordonia alkanivorans
NBRC 16433]
gi|343763071|dbj|GAA13427.1| putative Xre family DNA-binding protein [Gordonia alkanivorans
NBRC 16433]
Length=112
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/103 (57%), Positives = 70/103 (68%), Gaps = 6/103 (5%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
MA L+RE +GD LR R QGRTLREVS ARVSLGYLSE+ERG+KE SSELL+AIC AL
Sbjct 1 MAMLLREALGDSLRRVRTQQGRTLREVSTGARVSLGYLSEVERGQKEASSELLAAICDAL 60
Query 61 QLPLSVVLIDAGERMARQERLARATPAGRATGATIDASTKVVI 103
+ ++ +L+D G M E +A P G T +TKVVI
Sbjct 61 DVEIADLLLDVGHAMRPAETVA---PEVAEAGLT---ATKVVI 97
>gi|220912228|ref|YP_002487537.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus
A6]
gi|325962842|ref|YP_004240748.1| hypothetical protein Asphe3_14400 [Arthrobacter phenanthrenivorans
Sphe3]
gi|219859106|gb|ACL39448.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus
A6]
gi|323468929|gb|ADX72614.1| Helix-turn-helix protein [Arthrobacter phenanthrenivorans Sphe3]
Length=119
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/73 (66%), Positives = 60/73 (83%), Gaps = 0/73 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +GDVLR R QGRTLREVS SARVSLGYLSE+ERG+KE SSELLS+IC+AL +P
Sbjct 3 VLRHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVP 62
Query 64 LSVVLIDAGERMA 76
LS +L + +R+A
Sbjct 63 LSSMLREVSDRVA 75
>gi|184201232|ref|YP_001855439.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201]
gi|183581462|dbj|BAG29933.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201]
Length=110
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/77 (62%), Positives = 62/77 (81%), Gaps = 0/77 (0%)
Query 3 ALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQL 62
++R+ +G+VLR R QGRTLREVS SARVSLGYLSE+ERG+KE SSELL++ICTAL +
Sbjct 2 GVLRQEIGEVLRSVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLASICTALDI 61
Query 63 PLSVVLIDAGERMARQE 79
P+S +L + +R+A E
Sbjct 62 PMSQMLREVADRLAYAE 78
>gi|313837173|gb|EFS74887.1| helix-turn-helix protein [Propionibacterium acnes HL037PA2]
gi|314927806|gb|EFS91637.1| helix-turn-helix protein [Propionibacterium acnes HL044PA1]
gi|314971945|gb|EFT16043.1| helix-turn-helix protein [Propionibacterium acnes HL037PA3]
gi|328907270|gb|EGG27036.1| transcriptional regulator [Propionibacterium humerusii P08]
Length=91
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/78 (62%), Positives = 61/78 (79%), Gaps = 0/78 (0%)
Query 2 AALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQ 61
+AL+REV+G+ LR R QGRTLREVS +ARVSLGYLSE+ERG+KE SSEL+ AICTAL
Sbjct 3 SALLREVLGESLREQRFGQGRTLREVSSAARVSLGYLSEVERGQKEASSELILAICTALD 62
Query 62 LPLSVVLIDAGERMARQE 79
LP S ++ ++M + E
Sbjct 63 LPQSELMRIVSDKMFKNE 80
>gi|332670075|ref|YP_004453083.1| helix-turn-helix domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332339113|gb|AEE45696.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
Length=113
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/81 (65%), Positives = 64/81 (80%), Gaps = 1/81 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct 1 MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLNSICEAL 59
Query 61 QLPLSVVLIDAGERMARQERL 81
+P+S+VL + +R+A E L
Sbjct 60 DVPMSLVLREVSDRVAVAEGL 80
>gi|50842492|ref|YP_055719.1| transcriptional regulator [Propionibacterium acnes KPA171202]
gi|282854043|ref|ZP_06263380.1| DNA-binding protein [Propionibacterium acnes J139]
gi|289425252|ref|ZP_06427029.1| DNA-binding protein [Propionibacterium acnes SK187]
78 more sequence titles
Length=91
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/78 (61%), Positives = 62/78 (80%), Gaps = 0/78 (0%)
Query 2 AALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQ 61
+ L+RE++G+ LR R +QGRTLREVS +ARVSLGYLSE+ERG+KE SSEL+SAICTAL
Sbjct 3 STLLREMLGESLREQRFAQGRTLREVSSAARVSLGYLSEVERGQKEASSELISAICTALD 62
Query 62 LPLSVVLIDAGERMARQE 79
LP S ++ ++M + E
Sbjct 63 LPQSDLMRIVSDKMLKNE 80
>gi|269127509|ref|YP_003300879.1| XRE family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268312467|gb|ACY98841.1| transcriptional regulator, XRE family [Thermomonospora curvata
DSM 43183]
Length=127
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/101 (55%), Positives = 74/101 (74%), Gaps = 5/101 (4%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
L+R+++GDVLR R+ QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL +P
Sbjct 3 LLRQLLGDVLRQLRLRQGRTLREVSAAARVSLGYLSEVERGQKEASSELLASICKALGVP 62
Query 64 LSVVLIDAGERMA----RQER-LARATPAGRATGATIDAST 99
LS VL + +++A +QE +A A PA G ++ T
Sbjct 63 LSHVLREVADQLALAELQQEPVMAGAPPAHERLGEGLERET 103
>gi|334336752|ref|YP_004541904.1| helix-turn-helix domain protein [Isoptericola variabilis 225]
gi|334107120|gb|AEG44010.1| helix-turn-helix domain protein [Isoptericola variabilis 225]
Length=115
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/81 (65%), Positives = 64/81 (80%), Gaps = 1/81 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct 1 MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLASICEAL 59
Query 61 QLPLSVVLIDAGERMARQERL 81
+P+S+VL + +R+A E L
Sbjct 60 DVPMSLVLREVSDRIAVAEGL 80
>gi|325068439|ref|ZP_08127112.1| XRE family transcriptional regulator [Actinomyces oris K20]
gi|326773690|ref|ZP_08232973.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505]
gi|343521698|ref|ZP_08758664.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
175 str. F0384]
gi|326636920|gb|EGE37823.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505]
gi|343401107|gb|EGV13613.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
175 str. F0384]
Length=136
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/73 (65%), Positives = 59/73 (81%), Gaps = 0/73 (0%)
Query 4 LVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLP 63
++R +G+VLRG R QGRTLREVS ARVSLGYLSE+ERG+KE SSELL++IC AL P
Sbjct 40 VLRREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELLASICQALDAP 99
Query 64 LSVVLIDAGERMA 76
LS+VL + +R+A
Sbjct 100 LSMVLREVSDRIA 112
>gi|336321153|ref|YP_004601121.1| helix-turn-helix domain-containing protein [Cellvibrio gilvus
ATCC 13127]
gi|336104734|gb|AEI12553.1| helix-turn-helix domain protein [Cellvibrio gilvus ATCC 13127]
Length=163
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/81 (65%), Positives = 63/81 (78%), Gaps = 1/81 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL +IC AL
Sbjct 48 MVVLRREI-GDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLHSICEAL 106
Query 61 QLPLSVVLIDAGERMARQERL 81
+P+S+VL + +R+A E L
Sbjct 107 DVPMSLVLREVSDRVAVAEGL 127
>gi|340775998|gb|EGR98051.1| DNA-binding helix-turn-helix protein [Propionibacterium acnes
SK182B-JCVI]
Length=91
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/78 (61%), Positives = 61/78 (79%), Gaps = 0/78 (0%)
Query 2 AALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQ 61
+ L+REV+G+ LR R +QGRTLREVS +ARVSLGYLSE+ERG+KE SSEL+ AICTAL
Sbjct 3 STLLREVLGESLREQRFAQGRTLREVSSAARVSLGYLSEVERGQKEASSELILAICTALN 62
Query 62 LPLSVVLIDAGERMARQE 79
LP S ++ ++M + E
Sbjct 63 LPQSDLMRIISDKMLKNE 80
>gi|256832269|ref|YP_003160996.1| transcriptional regulator, XRE family [Jonesia denitrificans
DSM 20603]
gi|256685800|gb|ACV08693.1| transcriptional regulator, XRE family [Jonesia denitrificans
DSM 20603]
Length=99
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/81 (65%), Positives = 62/81 (77%), Gaps = 1/81 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR QGRTLREVS +ARVSLGYLSE+ERG+KE SSELL +IC AL
Sbjct 1 MVVLRREI-GDVLRSARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLGSICDAL 59
Query 61 QLPLSVVLIDAGERMARQERL 81
PLS++L + +R+A E L
Sbjct 60 DTPLSLILREVSDRVAVAEGL 80
>gi|229820941|ref|YP_002882467.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
12333]
gi|229566854|gb|ACQ80705.1| transcriptional regulator, XRE family [Beutenbergia cavernae
DSM 12333]
Length=104
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/76 (65%), Positives = 63/76 (83%), Gaps = 1/76 (1%)
Query 1 MAALVREVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTAL 60
M L RE+ GDVLR AR +QG+TLREVS +ARVSLGYLSE+ERG+KE SSELL++IC AL
Sbjct 1 MVVLRREL-GDVLRDARQNQGKTLREVSSAARVSLGYLSEVERGQKEASSELLASICAAL 59
Query 61 QLPLSVVLIDAGERMA 76
Q+ LS++L + +R+A
Sbjct 60 QVSLSMILREVSDRIA 75
Lambda K H
0.317 0.129 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128047486336
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40