BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2755c
Length=91
Score E
Sequences producing significant alignments: (Bits) Value
gi|15842293|ref|NP_337330.1| HsdS-related protein [Mycobacterium... 184 3e-45
gi|28868302|ref|NP_790921.1| type I restriction-modification sys... 113 9e-24
gi|158315561|ref|YP_001508069.1| restriction modification system... 100 8e-20
gi|294339299|emb|CAZ87655.1| Putative Restriction modification s... 99.8 1e-19
gi|242280198|ref|YP_002992327.1| restriction modification system... 99.0 2e-19
gi|220908458|ref|YP_002483769.1| restriction modification system... 97.8 5e-19
gi|198284497|ref|YP_002220818.1| restriction modification system... 97.1 8e-19
gi|291296825|ref|YP_003508223.1| restriction modification system... 95.9 2e-18
gi|339834363|gb|EGQ62133.1| type I restriction-modification syst... 95.9 2e-18
gi|2408222|gb|AAB70708.1| HsdS [Klebsiella pneumoniae] 95.1 3e-18
gi|53805024|ref|YP_113333.1| type I restriction-modification sys... 94.7 4e-18
gi|121583503|ref|YP_973929.1| restriction modification system DN... 94.0 6e-18
gi|331650404|ref|ZP_08351476.1| type I restriction-modification ... 93.6 1e-17
gi|49658898|emb|CAF28524.1| putative HsdS-like DNA methylase [Ye... 92.8 2e-17
gi|322691669|ref|YP_004221239.1| hypothetical protein BLLJ_1480 ... 91.3 4e-17
gi|86146743|ref|ZP_01065063.1| type I restriction-modification s... 90.9 6e-17
gi|344198531|ref|YP_004782857.1| restriction modification system... 89.4 2e-16
gi|288937352|ref|YP_003441411.1| restriction modification system... 89.4 2e-16
gi|253687261|ref|YP_003016451.1| restriction modification system... 88.6 3e-16
gi|219851731|ref|YP_002466163.1| restriction modification system... 86.7 9e-16
gi|253563523|ref|ZP_04840980.1| restriction modification system ... 85.5 2e-15
gi|32455520|ref|NP_862272.1| HsdS' [Lactobacillus sakei] >gi|244... 84.7 4e-15
gi|301162175|emb|CBW21720.1| putative type I DNA restriction-mod... 84.7 4e-15
gi|160945577|ref|ZP_02092803.1| hypothetical protein FAEPRAM212_... 84.0 6e-15
gi|126726006|ref|ZP_01741848.1| putative type I restriction-modi... 81.6 3e-14
gi|242278888|ref|YP_002991017.1| restriction modification system... 81.6 4e-14
gi|194364815|ref|YP_002027425.1| restriction modification system... 81.3 4e-14
gi|260767611|ref|ZP_05876547.1| type I restriction-modification ... 81.3 5e-14
gi|159904437|ref|YP_001548099.1| restriction modification system... 81.3 5e-14
gi|344340139|ref|ZP_08771065.1| restriction modification system ... 80.9 5e-14
gi|119357508|ref|YP_912152.1| restriction modification system DN... 80.5 9e-14
gi|21226532|ref|NP_632454.1| type I restriction-modification sys... 80.1 9e-14
gi|343920509|gb|EGV31240.1| restriction modification system DNA ... 79.7 1e-13
gi|284108343|ref|ZP_06386407.1| Restriction modification system ... 78.2 4e-13
gi|257051191|ref|YP_003129024.1| restriction modification system... 78.2 4e-13
gi|329913308|ref|ZP_08275914.1| Type I restriction-modification ... 78.2 4e-13
gi|313140399|ref|ZP_07802592.1| type I restriction-modification ... 77.4 6e-13
gi|148262630|ref|YP_001229336.1| restriction modification system... 75.9 2e-12
gi|315648621|ref|ZP_07901718.1| restriction modification system ... 75.9 2e-12
gi|315612675|ref|ZP_07887587.1| HsdS family protein [Streptococc... 74.3 6e-12
gi|323965458|gb|EGB60913.1| type I restriction modification DNA ... 73.9 8e-12
gi|75909705|ref|YP_324001.1| restriction modification system DNA... 73.2 1e-11
gi|295136493|ref|YP_003587169.1| restriction modification system... 71.6 3e-11
gi|339730590|emb|CCC41940.1| type I site-specific deoxyribonucle... 71.6 4e-11
gi|334123285|ref|ZP_08497313.1| type I restriction system specif... 71.2 4e-11
gi|262369880|ref|ZP_06063207.1| sty SBLI [Acinetobacter johnsoni... 71.2 4e-11
gi|227546694|ref|ZP_03976743.1| type I restriction enzyme HindVI... 70.5 8e-11
gi|301055838|ref|YP_003794049.1| type I restriction modification... 70.1 9e-11
gi|328947972|ref|YP_004365309.1| restriction modification system... 69.7 1e-10
gi|261867039|ref|YP_003254961.1| restriction modification system... 69.7 1e-10
>gi|15842293|ref|NP_337330.1| HsdS-related protein [Mycobacterium tuberculosis CDC1551]
gi|31793929|ref|NP_856422.1| type I restriction/modification system specificity determinant
HsdS [Mycobacterium bovis AF2122/97]
gi|57117020|ref|YP_177904.1| type I restriction/modification system specificity determinant
HsdS [Mycobacterium tuberculosis H37Rv]
64 more sequence titles
Length=91
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%), Gaps = 0/91 (0%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG
Sbjct 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR
Sbjct 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
>gi|28868302|ref|NP_790921.1| type I restriction-modification system, S subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28851539|gb|AAO54616.1| type I restriction-modification system, S subunit [Pseudomonas
syringae pv. tomato str. DC3000]
Length=422
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/91 (54%), Positives = 64/91 (71%), Gaps = 0/91 (0%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
MS W+ + FG+ + +QRGHDLP +R G+VP++GSFG+TG HDT GPGV IGRSG
Sbjct 1 MSSEWREITFGDFVAIQRGHDLPDQNRKLGSVPILGSFGITGYHDTVKAKGPGVTIGRSG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
A+ G A + WPL+T L+V DFKGN P+
Sbjct 61 ASFGVAAYTDQDYWPLNTALYVTDFKGNHPK 91
>gi|158315561|ref|YP_001508069.1| restriction modification system DNA specificity subunit [Frankia
sp. EAN1pec]
gi|158110966|gb|ABW13163.1| restriction modification system DNA specificity domain [Frankia
sp. EAN1pec]
Length=374
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/87 (52%), Positives = 60/87 (69%), Gaps = 0/87 (0%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W+ +++ L+RG DLPA R +G PV+GS GV+G HD GPG+ +GRSG++IG
Sbjct 4 WRRSSLADLVRLRRGFDLPAPERRAGCFPVVGSAGVSGWHDRGPIAGPGITLGRSGSSIG 63
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
T T+V WPL+T LFV DF+GNDPR
Sbjct 64 TVTYVPSDYWPLNTVLFVEDFQGNDPR 90
>gi|294339299|emb|CAZ87655.1| Putative Restriction modification system protein [Thiomonas sp.
3As]
Length=407
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/91 (52%), Positives = 57/91 (63%), Gaps = 0/91 (0%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M W+ GE + LQRGHDL + + G VPV+GS G G HD A GPGV IGRSG
Sbjct 1 MRSDWRQSNLGEFVRLQRGHDLTSLEQRPGNVPVMGSAGPNGTHDVARATGPGVVIGRSG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
A+IG F + WP +TCL+V DF GN+PR
Sbjct 61 ASIGRVHFSSSDYWPHNTCLYVTDFCGNNPR 91
>gi|242280198|ref|YP_002992327.1| restriction modification system DNA specificity domain protein
[Desulfovibrio salexigens DSM 2638]
gi|242123092|gb|ACS80788.1| restriction modification system DNA specificity domain protein
[Desulfovibrio salexigens DSM 2638]
Length=415
Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/87 (49%), Positives = 59/87 (68%), Gaps = 0/87 (0%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W+ F ++ LQRG DLP + R G +P++GS GVTG H+ + GPG+ +GRSGA+IG
Sbjct 7 WRDTIFENLVLLQRGIDLPQSQRRVGDIPILGSSGVTGYHNESKVAGPGITVGRSGASIG 66
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
T+ WPL+T L+V+DF+GN PR
Sbjct 67 VVTYSDIDFWPLNTALYVKDFRGNHPR 93
>gi|220908458|ref|YP_002483769.1| restriction modification system DNA specificity domain-containing
protein [Cyanothece sp. PCC 7425]
gi|219865069|gb|ACL45408.1| restriction modification system DNA specificity domain protein
[Cyanothece sp. PCC 7425]
Length=388
Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/90 (54%), Positives = 58/90 (65%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+ + W L GEV+ LQRG DLP SR G +P+I S GVT H++A+ GPGV GR G
Sbjct 18 IPENWADLLLGEVITLQRGFDLPNRSRRKGDIPIISSSGVTDTHNSASALGPGVITGRYG 77
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
IG FV G WPL+T LFV +FKGNDP
Sbjct 78 -TIGEVFFVEGDYWPLNTTLFVSNFKGNDP 106
>gi|198284497|ref|YP_002220818.1| restriction modification system DNA specificity protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667678|ref|YP_002427161.1| type I restriction-modification system, S subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198249018|gb|ACH84611.1| restriction modification system DNA specificity domain [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519891|gb|ACK80477.1| type I restriction-modification system, S subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length=418
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/91 (51%), Positives = 58/91 (64%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M++ WK G+V+EL+RG+DLP R SG VP++ S GVT H A GPGV GR G
Sbjct 1 MANEWKECSLGDVIELKRGYDLPQKERLSGDVPLVSSSGVTDTHAKAMVKGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
+G +V WPL+T L+V DFKGNDPR
Sbjct 61 -TLGQVFYVRQNFWPLNTTLYVYDFKGNDPR 90
>gi|291296825|ref|YP_003508223.1| restriction modification system DNA specificity domain-containing
protein [Meiothermus ruber DSM 1279]
gi|290471784|gb|ADD29203.1| restriction modification system DNA specificity domain protein
[Meiothermus ruber DSM 1279]
Length=419
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/91 (52%), Positives = 56/91 (62%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M WK GEV+EL+RG+DLP R G VP++ S GVT H A GPGV GR G
Sbjct 1 MGGEWKECALGEVIELKRGYDLPQQDRRPGYVPIVSSSGVTDYHAEAMVKGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
+G +V WPL+T L+VRDFKGNDPR
Sbjct 61 -TLGEVFYVEQDFWPLNTTLYVRDFKGNDPR 90
>gi|339834363|gb|EGQ62133.1| type I restriction-modification system, S subunit [Acidithiobacillus
sp. GGI-221]
Length=355
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/91 (51%), Positives = 58/91 (64%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M++ WK G+V+EL+RG+DLP R SG VP++ S GVT H A GPGV GR G
Sbjct 18 MANEWKECSLGDVIELKRGYDLPQKERLSGDVPLVSSSGVTDTHAKAMVKGPGVVTGRYG 77
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
+G +V WPL+T L+V DFKGNDPR
Sbjct 78 -TLGQVFYVRQNFWPLNTTLYVYDFKGNDPR 107
>gi|2408222|gb|AAB70708.1| HsdS [Klebsiella pneumoniae]
Length=439
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/90 (47%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M WK G+ +EL+RG+DLP ++R G++P+I S G T HD GPGV GR G
Sbjct 1 MGSKWKECELGDFIELKRGYDLPKSTRNEGSIPIISSSGFTDFHDKPMVKGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
IG + WPL+T L+V DFKGNDP
Sbjct 61 -TIGEVFYSEEDFWPLNTTLYVVDFKGNDP 89
>gi|53805024|ref|YP_113333.1| type I restriction-modification system S subunit [Methylococcus
capsulatus str. Bath]
gi|53758785|gb|AAU93076.1| type I restriction-modification system, S subunit, EcoA family
[Methylococcus capsulatus str. Bath]
Length=416
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/91 (51%), Positives = 57/91 (63%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M+ WK G+V+EL+RG+DLP R G VP++ S GVT H A GPGV GR G
Sbjct 1 MAGEWKECSLGDVIELKRGYDLPQKDRLPGDVPLVSSSGVTDTHAKAMVKGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
+G +V WPL+T L+VRDFKGNDPR
Sbjct 61 -TLGQVFYVEQDFWPLNTTLYVRDFKGNDPR 90
>gi|121583503|ref|YP_973929.1| restriction modification system DNA specificity subunit [Polaromonas
naphthalenivorans CJ2]
gi|120596753|gb|ABM40187.1| restriction modification system DNA specificity domain [Polaromonas
naphthalenivorans CJ2]
Length=415
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/91 (50%), Positives = 57/91 (63%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
MS W+ + G+ +EL+RG+DLP A R SG P++ S GV+ H GPGV GR G
Sbjct 1 MSSEWQFGKLGDFIELKRGYDLPQAKRTSGPFPLVSSSGVSDCHSVPMVRGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
IG FV WPL+T L+VRDFKGNDP+
Sbjct 61 -TIGQVYFVEDDFWPLNTTLYVRDFKGNDPK 90
>gi|331650404|ref|ZP_08351476.1| type I restriction-modification system, S subunit, EcoA family
[Escherichia coli M605]
gi|331040798|gb|EGI12956.1| type I restriction-modification system, S subunit, EcoA family
[Escherichia coli M605]
Length=440
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/90 (47%), Positives = 52/90 (58%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
MS W GE + L+RG+DLP + R G +PVI S G +G HD GPGV GR G
Sbjct 1 MSSEWINTTLGEFITLKRGYDLPKSKRNDGNIPVISSSGYSGTHDVPMVKGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
IG +V WP++T L+V DFKGN P
Sbjct 61 -TIGEVFYVVDDFWPINTTLYVSDFKGNSP 89
>gi|49658898|emb|CAF28524.1| putative HsdS-like DNA methylase [Yersinia pseudotuberculosis]
Length=449
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/90 (48%), Positives = 53/90 (59%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M W + GE L L+RG+DLP + R SG +P+I S G +G HD GPGV GR G
Sbjct 1 MGSEWLDITLGEFLNLKRGYDLPKSKRNSGNIPIISSSGFSGNHDKPMVYGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
IG +V WPL+T L+V DFKGN P
Sbjct 61 -TIGEVFYVNESYWPLNTTLYVDDFKGNSP 89
>gi|322691669|ref|YP_004221239.1| hypothetical protein BLLJ_1480 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456525|dbj|BAJ67147.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length=363
Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/87 (49%), Positives = 54/87 (63%), Gaps = 1/87 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W+ GE+ +L+RG DLP + R G VPV S G+TG + TAA +GP V GR G IG
Sbjct 3 WRETTLGEITDLKRGFDLPKSQRLQGDVPVYSSSGITGSNSTAAVEGPCVITGRYG-TIG 61
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
F GP WPL+T L+ +F GN+PR
Sbjct 62 EVFFSGGPCWPLNTALYSTEFNGNNPR 88
>gi|86146743|ref|ZP_01065063.1| type I restriction-modification system, S subunit, EcoA family
protein [Vibrio sp. MED222]
gi|85835393|gb|EAQ53531.1| type I restriction-modification system, S subunit, EcoA family
protein [Vibrio sp. MED222]
Length=417
Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/90 (47%), Positives = 53/90 (59%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M W G+V+EL+RG+DLP R G VPVI S G +G H+ PGV GR G
Sbjct 1 MGSEWIQSELGDVIELKRGYDLPKTKRIDGNVPVISSSGHSGFHNEVKIKSPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
IG ++ WPL+T L+V+DFKGNDP
Sbjct 61 -TIGQVFYIEEDFWPLNTTLYVKDFKGNDP 89
>gi|344198531|ref|YP_004782857.1| restriction modification system DNA specificity domain-containing
protein [Acidithiobacillus ferrivorans SS3]
gi|343773975|gb|AEM46531.1| restriction modification system DNA specificity domain-containing
protein [Acidithiobacillus ferrivorans SS3]
Length=360
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/90 (49%), Positives = 57/90 (64%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+ GW+ R +VL LQRG DLP ASR GTVP+I + GVTG H+ A PGV GRSG
Sbjct 181 IPQGWEVGRLDDVLVLQRGFDLPKASRTEGTVPIIAATGVTGFHNEAKVKAPGVVTGRSG 240
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
+IG +V WPL+T L+V++F +P
Sbjct 241 -SIGEVLYVQEDFWPLNTSLWVKEFPKGEP 269
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (45%), Positives = 51/84 (61%), Gaps = 1/84 (1%)
Query 8 LRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTAT 67
+RF + + LQRG DL G PVIGS + G H+ + PGV GRSG ++G
Sbjct 1 MRFSDFVTLQRGFDLTKTEMRDGPYPVIGSTSIIGHHNEFKANPPGVVTGRSG-SLGVVQ 59
Query 68 FVAGPIWPLDTCLFVRDFKGNDPR 91
+VA WP +T L+V+DF+GNDP+
Sbjct 60 YVAERYWPHNTSLWVKDFRGNDPK 83
>gi|288937352|ref|YP_003441411.1| restriction modification system DNA specificity domain-containing
protein [Klebsiella variicola At-22]
gi|288892061|gb|ADC60379.1| restriction modification system DNA specificity domain protein
[Klebsiella variicola At-22]
Length=430
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/89 (45%), Positives = 52/89 (59%), Gaps = 1/89 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
M W G+ +EL+RG+DLP ++R G++P+I S G T HD GPGV GR G
Sbjct 1 MGSKWIECELGDFIELKRGYDLPKSTRNEGSIPIISSSGFTDFHDKPMVKGPGVVTGRYG 60
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGND 89
IG + WPL+T L+V DFKGND
Sbjct 61 -TIGEVFYSEEDFWPLNTTLYVVDFKGND 88
>gi|253687261|ref|YP_003016451.1| restriction modification system DNA specificity domain protein
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251753839|gb|ACT11915.1| restriction modification system DNA specificity domain protein
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length=413
Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/87 (48%), Positives = 52/87 (60%), Gaps = 1/87 (1%)
Query 4 GWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAI 63
GW + G+VL LQRG DLP R G +P+I S G +G H+ A PG+ GR G I
Sbjct 21 GWLQCKLGDVLTLQRGFDLPQRLRKEGNIPIISSSGESGWHNNAIVSPPGIVTGRYG-TI 79
Query 64 GTATFVAGPIWPLDTCLFVRDFKGNDP 90
G F+ P WPL+T L+VR+FKG P
Sbjct 80 GEVFFIDKPFWPLNTTLYVREFKGITP 106
>gi|219851731|ref|YP_002466163.1| restriction modification system DNA specificity domain protein
[Methanosphaerula palustris E1-9c]
gi|219545990|gb|ACL16440.1| restriction modification system DNA specificity domain protein
[Methanosphaerula palustris E1-9c]
Length=205
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/89 (44%), Positives = 56/89 (63%), Gaps = 1/89 (1%)
Query 3 DGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAA 62
+ W+ RF E + LQRG+D+ + G VPV+ S G+ H+ + +GPGV IGR G
Sbjct 31 ERWREGRFDEFILLQRGYDITKDEQHDGIVPVVSSSGIKSFHNESRANGPGVVIGRKG-T 89
Query 63 IGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
+G +V P WP DT L+V+DFKGN+P+
Sbjct 90 LGKVFYVDCPYWPHDTSLWVKDFKGNNPK 118
>gi|253563523|ref|ZP_04840980.1| restriction modification system DNA specificity subunit [Bacteroides
sp. 3_2_5]
gi|251947299|gb|EES87581.1| restriction modification system DNA specificity subunit [Bacteroides
sp. 3_2_5]
Length=151
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/83 (46%), Positives = 54/83 (66%), Gaps = 1/83 (1%)
Query 9 RFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATF 68
+ GE+LELQRG+DLP++ G + V GS GV G H+ A + P + +GRSG ++G +
Sbjct 7 KLGEILELQRGYDLPSSQMKKGDILVAGSNGVIGYHNEARSNHPCITVGRSG-SVGKVHY 65
Query 69 VAGPIWPLDTCLFVRDFKGNDPR 91
W +T LFV+DFKGNDP+
Sbjct 66 YEQATWAHNTALFVKDFKGNDPK 88
>gi|32455520|ref|NP_862272.1| HsdS' [Lactobacillus sakei]
gi|24461247|gb|AAN61994.1|AF438419_4 HsdS' [Lactobacillus sakei]
Length=151
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/82 (53%), Positives = 52/82 (64%), Gaps = 2/82 (2%)
Query 10 FGEVLELQRGHDLPAASRGS-GTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATF 68
F + +EL RG+DLP A R + G VPVI + G G HD A GPGV GRSG +G+ F
Sbjct 3 FSDFIELHRGYDLPKAKRNADGLVPVIAAGGYDGFHDAAKVQGPGVITGRSG-TLGSVYF 61
Query 69 VAGPIWPLDTCLFVRDFKGNDP 90
WPL+T LFV +FKGNDP
Sbjct 62 NTTDFWPLNTTLFVSNFKGNDP 83
>gi|301162175|emb|CBW21720.1| putative type I DNA restriction-modification [Bacteroides fragilis
638R]
Length=399
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/83 (46%), Positives = 54/83 (66%), Gaps = 1/83 (1%)
Query 9 RFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATF 68
+ GE+LELQRG+DLP++ G + V GS GV G H+ A + P + +GRSG ++G +
Sbjct 7 KLGEILELQRGYDLPSSQMKKGDILVAGSNGVIGYHNEARSNHPCITVGRSG-SVGKVHY 65
Query 69 VAGPIWPLDTCLFVRDFKGNDPR 91
W +T LFV+DFKGNDP+
Sbjct 66 YEQATWAHNTALFVKDFKGNDPK 88
>gi|160945577|ref|ZP_02092803.1| hypothetical protein FAEPRAM212_03106 [Faecalibacterium prausnitzii
M21/2]
gi|158443308|gb|EDP20313.1| hypothetical protein FAEPRAM212_03106 [Faecalibacterium prausnitzii
M21/2]
Length=156
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/87 (44%), Positives = 50/87 (58%), Gaps = 1/87 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
WK GE + L+RG+DLP R +G +P+ S GVTG H+ A + PGV GR G IG
Sbjct 4 WKIDELGEFVTLKRGYDLPQQKRKNGEIPIFSSSGVTGTHNEAMVEAPGVITGRYG-TIG 62
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
F WPL+T L+V +F ND +
Sbjct 63 EVFFAETSFWPLNTTLYVENFHENDEK 89
>gi|126726006|ref|ZP_01741848.1| putative type I restriction-modification system, S subunit [Rhodobacterales
bacterium HTCC2150]
gi|126705210|gb|EBA04301.1| putative type I restriction-modification system, S subunit [Rhodobacterales
bacterium HTCC2150]
Length=371
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/86 (47%), Positives = 51/86 (60%), Gaps = 1/86 (1%)
Query 3 DGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAA 62
+GW R GEV E QRG DLP + R G +P+I S G +G H TA + G+ GR G +
Sbjct 4 EGWGECRLGEVTEFQRGFDLPKSQRQVGEIPIISSAGYSGWHSTAKVERAGIVTGRYG-S 62
Query 63 IGTATFVAGPIWPLDTCLFVRDFKGN 88
IG V WPL+T L+V+DF GN
Sbjct 63 IGDVFLVYEDHWPLNTTLWVKDFHGN 88
>gi|242278888|ref|YP_002991017.1| restriction modification system DNA specificity domain protein
[Desulfovibrio salexigens DSM 2638]
gi|242121782|gb|ACS79478.1| restriction modification system DNA specificity domain protein
[Desulfovibrio salexigens DSM 2638]
Length=387
Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/91 (43%), Positives = 51/91 (57%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+ GW GE LQRG DLP R G P+I S G H+ GPGV GRSG
Sbjct 3 LPKGWDKKTLGESCTLQRGFDLPKRLRVKGEHPLISSSGCIDSHNEPKVAGPGVVTGRSG 62
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
+IG+ ++ WPL+T L+V+++ GNDPR
Sbjct 63 -SIGSLFYIEDDFWPLNTTLYVKNYFGNDPR 92
>gi|194364815|ref|YP_002027425.1| restriction modification system DNA specificity domain [Stenotrophomonas
maltophilia R551-3]
gi|194347619|gb|ACF50742.1| restriction modification system DNA specificity domain [Stenotrophomonas
maltophilia R551-3]
Length=364
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/88 (45%), Positives = 49/88 (56%), Gaps = 1/88 (1%)
Query 4 GWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAI 63
GW + + L+RG+DLP R G VP+ + G G HD +GPGV GRSG I
Sbjct 9 GWPLVPLKNIATLKRGYDLPVGMRNKGEVPIYAANGQNGSHDEVKINGPGVITGRSG-TI 67
Query 64 GTATFVAGPIWPLDTCLFVRDFKGNDPR 91
G + G WPL+T L+V DF GN PR
Sbjct 68 GRVHYCEGGFWPLNTALYVMDFHGNHPR 95
>gi|260767611|ref|ZP_05876547.1| type I restriction-modification system specificity subunit S
[Vibrio furnissii CIP 102972]
gi|260617511|gb|EEX42694.1| type I restriction-modification system specificity subunit S
[Vibrio furnissii CIP 102972]
Length=374
Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/87 (50%), Positives = 61/87 (71%), Gaps = 1/87 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W + G++L L+RG+DLP ++R SG+VPV+ S G+TG H+TA +GP V GR G +G
Sbjct 3 WVECQLGDILTLKRGYDLPHSARKSGSVPVVSSSGITGYHNTAKVEGPAVVTGRYG-TLG 61
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
+V G WPL+T L+V+DFKGN P+
Sbjct 62 EVYYVEGECWPLNTSLYVQDFKGNRPK 88
>gi|159904437|ref|YP_001548099.1| restriction modification system DNA specificity subunit [Methanococcus
maripaludis C6]
gi|159885930|gb|ABX00867.1| restriction modification system DNA specificity domain [Methanococcus
maripaludis C6]
Length=397
Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/87 (41%), Positives = 52/87 (60%), Gaps = 1/87 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W+ GE++ QRGHDLP SR +G PV+ S G+ G H+ + G+ IGRSG +G
Sbjct 17 WEVKEIGELVTFQRGHDLPVNSRKNGIYPVVASNGIVGYHNEYKVENEGLTIGRSG-NLG 75
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
+V+ WPL+T L+V+ F + P+
Sbjct 76 EPFYVSTSFWPLNTTLYVKKFHNSHPK 102
>gi|344340139|ref|ZP_08771065.1| restriction modification system DNA specificity domain protein
[Thiocapsa marina 5811]
gi|343799797|gb|EGV17745.1| restriction modification system DNA specificity domain protein
[Thiocapsa marina 5811]
Length=386
Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/87 (43%), Positives = 52/87 (60%), Gaps = 1/87 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W+ +++ QRG+D+ A + SG +PVI S G+T H+ A GPGV IGR G +G
Sbjct 11 WRDATLQDLVFFQRGYDITKAQQHSGNIPVISSSGITSFHNEAKAQGPGVVIGRKG-TLG 69
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
+ + A WP DT L+ RD +GN PR
Sbjct 70 SVHYSAQDYWPHDTTLWSRDLRGNIPR 96
>gi|119357508|ref|YP_912152.1| restriction modification system DNA specificity subunit [Chlorobium
phaeobacteroides DSM 266]
gi|119354857|gb|ABL65728.1| restriction modification system DNA specificity domain [Chlorobium
phaeobacteroides DSM 266]
Length=414
Score = 80.5 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/87 (46%), Positives = 50/87 (58%), Gaps = 1/87 (1%)
Query 4 GWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAI 63
GW+ R +VL LQRG DLP A R GTVP+ + GVTG H A P V GRSG I
Sbjct 242 GWEAGRLDDVLVLQRGFDLPKAKRMEGTVPIYAATGVTGFHCEAKVKAPCVVTGRSG-TI 300
Query 64 GTATFVAGPIWPLDTCLFVRDFKGNDP 90
G +V WPL+T L+ + F ++P
Sbjct 301 GDVIYVQEDFWPLNTSLWAKGFPKSEP 327
>gi|21226532|ref|NP_632454.1| type I restriction-modification system specificity subunit [Methanosarcina
mazei Go1]
gi|20904802|gb|AAM30126.1| type I restriction-modification system specificity subunit [Methanosarcina
mazei Go1]
Length=439
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/86 (48%), Positives = 54/86 (63%), Gaps = 1/86 (1%)
Query 6 KTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGT 65
KT+ E + LQRG DLPA+ R +G VPV+ S G+ G HD A + PGV I +IG
Sbjct 4 KTIALNEFIILQRGFDLPASDRKNGNVPVVASTGIGGYHDEAKVEAPGVVI-GRSGSIGG 62
Query 66 ATFVAGPIWPLDTCLFVRDFKGNDPR 91
F+ WPL+T L+V+DFKG+ PR
Sbjct 63 GQFITENFWPLNTTLWVKDFKGHHPR 88
>gi|343920509|gb|EGV31240.1| restriction modification system DNA specificity domain protein
[Thiorhodococcus drewsii AZ1]
Length=409
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/87 (45%), Positives = 52/87 (60%), Gaps = 1/87 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W G+ ++LQRG D+ R G PVI S G+ HDTA GPGV +GR G+A G
Sbjct 235 WDCCGLGQKIKLQRGVDITKDKRIEGPFPVISSGGIDYFHDTALCAGPGVLVGRKGSA-G 293
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDPR 91
+V WP DT L+VR+F+GN+P+
Sbjct 294 KLHYVETDFWPHDTTLYVREFRGNEPK 320
>gi|284108343|ref|ZP_06386407.1| Restriction modification system DNA specificity domain [Candidatus
Poribacteria sp. WGA-A3]
gi|283829904|gb|EFC34190.1| Restriction modification system DNA specificity domain [Candidatus
Poribacteria sp. WGA-A3]
Length=393
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/79 (47%), Positives = 46/79 (59%), Gaps = 1/79 (1%)
Query 4 GWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAI 63
GW+T R G+VL+L G LP SR G +PV GS GV G H A D PG+ +GR G+A
Sbjct 3 GWQTKRLGDVLQLNYGKSLPVKSRVEGPIPVYGSNGVVGSHTEAIVDAPGLIVGRKGSA- 61
Query 64 GTATFVAGPIWPLDTCLFV 82
G GP P+DT +V
Sbjct 62 GQVHLSRGPFCPIDTTFYV 80
>gi|257051191|ref|YP_003129024.1| restriction modification system DNA specificity domain protein
[Halorhabdus utahensis DSM 12940]
gi|256689954|gb|ACV10291.1| restriction modification system DNA specificity domain protein
[Halorhabdus utahensis DSM 12940]
Length=442
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 49/80 (62%), Gaps = 1/80 (1%)
Query 3 DGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAA 62
+ W +R GE+L L+ G +LP+ SR SGTVPV GS G H AA + PG+ +GR G +
Sbjct 38 ESWNLVRLGEILTLEYGDNLPSDSRESGTVPVFGSNGQVDTHSEAAVEKPGIILGRKG-S 96
Query 63 IGTATFVAGPIWPLDTCLFV 82
IG F P WP+DT ++
Sbjct 97 IGEIDFSDRPFWPIDTTYYI 116
>gi|329913308|ref|ZP_08275914.1| Type I restriction-modification system, specificity subunit S
[Oxalobacteraceae bacterium IMCC9480]
gi|327545395|gb|EGF30614.1| Type I restriction-modification system, specificity subunit S
[Oxalobacteraceae bacterium IMCC9480]
Length=517
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/86 (44%), Positives = 50/86 (59%), Gaps = 1/86 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W + G+V+ LQRG DLP+ R G VP++ S GV+ + GPGV GR G IG
Sbjct 112 WAEVPLGDVITLQRGFDLPSQKRKPGKVPIVSSSGVSDYNSEVGVKGPGVVTGRYG-TIG 170
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDP 90
+ WPL+T L+V++F GNDP
Sbjct 171 QVFLIKEDFWPLNTTLWVKNFHGNDP 196
>gi|313140399|ref|ZP_07802592.1| type I restriction-modification system [Bifidobacterium bifidum
NCIMB 41171]
gi|313132909|gb|EFR50526.1| type I restriction-modification system [Bifidobacterium bifidum
NCIMB 41171]
Length=167
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/91 (43%), Positives = 50/91 (55%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+D W+ + GEV LQRG DLP G PV+ S G+ G H GPGV GRSG
Sbjct 16 FTDPWEQRKLGEVAPLQRGFDLPVNQMTPGPYPVVMSNGIGGWHSKYMVKGPGVVTGRSG 75
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
IG+ ++ WP +T L+V F GN+PR
Sbjct 76 -TIGSLHYIEQNFWPHNTSLWVTSFNGNEPR 105
>gi|148262630|ref|YP_001229336.1| restriction modification system DNA specificity subunit [Geobacter
uraniireducens Rf4]
gi|146396130|gb|ABQ24763.1| restriction modification system DNA specificity domain [Geobacter
uraniireducens Rf4]
Length=385
Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/83 (40%), Positives = 49/83 (60%), Gaps = 1/83 (1%)
Query 9 RFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATF 68
R G+++ +RG+DLP+ R G P++ S G++G H G G+ GR G +G +
Sbjct 8 RLGDIVNFKRGYDLPSYKRKEGPYPIVSSSGISGYHAEYKAKGEGLITGRYG-TLGEMYY 66
Query 69 VAGPIWPLDTCLFVRDFKGNDPR 91
V G WP +T L+V DFKGN P+
Sbjct 67 VNGKYWPHNTALYVTDFKGNYPK 89
>gi|315648621|ref|ZP_07901718.1| restriction modification system DNA specificity domain protein
[Paenibacillus vortex V453]
gi|315276000|gb|EFU39348.1| restriction modification system DNA specificity domain protein
[Paenibacillus vortex V453]
Length=389
Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/90 (43%), Positives = 50/90 (56%), Gaps = 1/90 (1%)
Query 2 SDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGA 61
+D W+ + ++ LQRG DLP + +G+ PVI S G+ H PGV GRSG
Sbjct 15 TDAWEQRKVIDIAPLQRGFDLPVSEMEAGSYPVIMSNGIGAYHSKYKAKAPGVVTGRSG- 73
Query 62 AIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
IG TFV WP +T L+V DFK ND +
Sbjct 74 TIGNLTFVEVDYWPHNTALWVTDFKRNDAK 103
>gi|315612675|ref|ZP_07887587.1| HsdS family protein [Streptococcus sanguinis ATCC 49296]
gi|315315262|gb|EFU63302.1| HsdS family protein [Streptococcus sanguinis ATCC 49296]
Length=388
Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/80 (43%), Positives = 49/80 (62%), Gaps = 1/80 (1%)
Query 10 FGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATFV 69
G+++E QRG+DLP + G PV S G+ G H+ +GPG+ IGRSG +G +
Sbjct 9 LGDLVEFQRGYDLPKSKFVEGKYPVQSSNGILGYHNEYKVEGPGITIGRSG-TVGNPHLI 67
Query 70 AGPIWPLDTCLFVRDFKGND 89
+P +T LFV++FKGND
Sbjct 68 RENFFPHNTSLFVKEFKGND 87
>gi|323965458|gb|EGB60913.1| type I restriction modification DNA specificity domain-containing
protein [Escherichia coli M863]
gi|327250265|gb|EGE61984.1| type I restriction modification DNA specificity domain protein
[Escherichia coli STEC_7v]
Length=438
Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/87 (40%), Positives = 48/87 (56%), Gaps = 1/87 (1%)
Query 4 GWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAI 63
GW+ + ++L LQRG DLP+ R G P+I + G G HD A PG+ GRSG +
Sbjct 256 GWEIGKLQDLLILQRGFDLPSTQRNIGLHPIIAASGYNGTHDIAMVKAPGIVTGRSG-VL 314
Query 64 GTATFVAGPIWPLDTCLFVRDFKGNDP 90
G + WPL+T L+V++ K P
Sbjct 315 GNVFLILEDFWPLNTTLWVKELKHATP 341
>gi|75909705|ref|YP_324001.1| restriction modification system DNA specificity subunit [Anabaena
variabilis ATCC 29413]
gi|75703430|gb|ABA23106.1| Restriction modification system DNA specificity domain protein
[Anabaena variabilis ATCC 29413]
Length=405
Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/90 (39%), Positives = 49/90 (55%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+ + W+ RF E LQRG+DLP G PVI S + H+ + P + GRSG
Sbjct 217 IPESWERKRFDEFCLLQRGYDLPDTQVIPGQYPVIASTSIKTYHNQFKVNPPVITTGRSG 276
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
++G F+ WPL+T LFV++F GN P
Sbjct 277 -SLGIILFINSQAWPLNTTLFVKNFYGNSP 305
>gi|295136493|ref|YP_003587169.1| restriction modification system DNA specificity subunit [Zunongwangia
profunda SM-A87]
gi|294984508|gb|ADF54973.1| restriction modification system DNA specificity subunit [Zunongwangia
profunda SM-A87]
Length=405
Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/90 (35%), Positives = 50/90 (56%), Gaps = 1/90 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+ +GW ++ LQRG DLP R G VP+ + G + H+ + PGV GRSG
Sbjct 220 IPEGWVVANLEDLFVLQRGFDLPKKKRIEGNVPIYAASGKSTYHNEYKVEAPGVTTGRSG 279
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDP 90
+G FV+ WPL+T L++++++ + P
Sbjct 280 -VLGNVYFVSEDFWPLNTSLWIKEYRSSTP 308
>gi|339730590|emb|CCC41940.1| type I site-specific deoxyribonuclease subunit rmeS [Haloquadratum
walsbyi C23]
Length=424
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/82 (41%), Positives = 45/82 (55%), Gaps = 1/82 (1%)
Query 3 DGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAA 62
+ W+ LR G+VL + G +LPA +R G +PV GS G H A D G+ IGR G +
Sbjct 42 EDWELLRLGDVLSFEYGDNLPADTREDGEIPVYGSNGQVDTHTEANVDTAGIIIGRKG-S 100
Query 63 IGTATFVAGPIWPLDTCLFVRD 84
IG F P W +DT ++ D
Sbjct 101 IGKGEFSINPFWAIDTTYYISD 122
>gi|334123285|ref|ZP_08497313.1| type I restriction system specificity protein [Enterobacter hormaechei
ATCC 49162]
gi|333390907|gb|EGK62032.1| type I restriction system specificity protein [Enterobacter hormaechei
ATCC 49162]
Length=421
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/86 (40%), Positives = 49/86 (57%), Gaps = 1/86 (1%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIG 64
W+ + ++L LQRG DLP+++R G P+I + G G H+ A PGV GRSG +G
Sbjct 240 WELGKLQDLLVLQRGFDLPSSARKDGEFPLIAASGPNGTHNVAMAKAPGVITGRSG-VLG 298
Query 65 TATFVAGPIWPLDTCLFVRDFKGNDP 90
WPL+T L+V++FK P
Sbjct 299 KVYLTLEDYWPLNTTLWVKEFKRATP 324
>gi|262369880|ref|ZP_06063207.1| sty SBLI [Acinetobacter johnsonii SH046]
gi|262314919|gb|EEY95959.1| sty SBLI [Acinetobacter johnsonii SH046]
Length=434
Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/80 (47%), Positives = 49/80 (62%), Gaps = 1/80 (1%)
Query 12 EVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATFVAG 71
E + LQRG DLP + R SG +PV+ S GV G H+ D PGV I +IG ++
Sbjct 11 EFILLQRGFDLPQSDRISGDIPVVASTGVAGFHNEYKVDAPGVVI-GRSGSIGGGQYIKE 69
Query 72 PIWPLDTCLFVRDFKGNDPR 91
WPL+T L+V+DFKG+D R
Sbjct 70 KFWPLNTTLWVKDFKGHDAR 89
>gi|227546694|ref|ZP_03976743.1| type I restriction enzyme HindVIIP specificity protein [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|227212840|gb|EEI80719.1| type I restriction enzyme HindVIIP specificity protein [Bifidobacterium
longum subsp. infantis ATCC 55813]
Length=200
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/91 (41%), Positives = 47/91 (52%), Gaps = 1/91 (1%)
Query 1 MSDGWKTLRFGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
+D W+ + V LQRG DLPA G PV+ S G+ H+ GPGV GRSG
Sbjct 16 FTDPWEQRKLIMVAPLQRGFDLPAEKIIPGVYPVMMSNGIGAYHNEYKVKGPGVVTGRSG 75
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGNDPR 91
IG +V WP +T L+V F GN P+
Sbjct 76 -TIGNLQYVESAFWPHNTTLWVTKFYGNHPK 105
>gi|301055838|ref|YP_003794049.1| type I restriction modification enzyme protein S [Bacillus cereus
biovar anthracis str. CI]
gi|300378007|gb|ADK06911.1| type I restriction modification enzyme protein S [Bacillus cereus
biovar anthracis str. CI]
Length=369
Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/86 (42%), Positives = 50/86 (59%), Gaps = 2/86 (2%)
Query 5 WKTLRFGEVLELQRGHDLPAASRGS-GTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAI 63
W+T R ++ LQRG+DLP SR G V + GS GV G+H+ A G G+ GRSG +I
Sbjct 206 WETTRLDNIVVLQRGYDLPIKSRNEMGEVEIWGSNGVVGVHNEAKIIGGGIVTGRSG-SI 264
Query 64 GTATFVAGPIWPLDTCLFVRDFKGND 89
G + W L+T LF ++ GN+
Sbjct 265 GNVYYTYKDFWALNTTLFSKETYGNN 290
>gi|328947972|ref|YP_004365309.1| restriction modification system DNA specificity domain protein
[Treponema succinifaciens DSM 2489]
gi|328448296|gb|AEB14012.1| restriction modification system DNA specificity domain protein
[Treponema succinifaciens DSM 2489]
Length=337
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/89 (43%), Positives = 50/89 (57%), Gaps = 3/89 (3%)
Query 2 SDGWKTLRFGEVLELQRGHDLPAASRGS-GTVPVIGSFGVTGMHDTAAYDGPGVAIGRSG 60
S + T + +V+ +QRG+DLP R S G +PV GS G+ G H+ A D G+ GRSG
Sbjct 171 SKNFPTKKVIDVVTMQRGYDLPVQDRDSKGKIPVFGSNGILGNHNLAKMD-KGIITGRSG 229
Query 61 AAIGTATFVAGPIWPLDTCLFVRDFKGND 89
IG P WPL+T LF D GN+
Sbjct 230 T-IGEVYMCETPFWPLNTTLFSNDTHGNN 257
>gi|261867039|ref|YP_003254961.1| restriction modification system DNA specificity subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412371|gb|ACX81742.1| restriction modification system DNA specificity subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
Length=317
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 47/80 (59%), Gaps = 1/80 (1%)
Query 10 FGEVLELQRGHDLPAASRGSGTVPVIGSFGVTGMHDTAAYDGPGVAIGRSGAAIGTATFV 69
G+++E QRG+DLP + G PV S G+ G H+ PG+ IGRSG +G +
Sbjct 9 LGDLVEFQRGYDLPKDAFVKGEYPVQSSNGILGYHNEYKVKAPGITIGRSG-TVGIPHLI 67
Query 70 AGPIWPLDTCLFVRDFKGND 89
+P +T L+V+DFKGN+
Sbjct 68 TKNFFPHNTALYVKDFKGNN 87
Lambda K H
0.320 0.141 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128725229700
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40