BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2758c

Length=88
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609895|ref|NP_217274.1|  hypothetical protein Rv2758c [Mycob...   178    2e-43
gi|167968585|ref|ZP_02550862.1|  hypothetical protein MtubH3_1132...   147    7e-34
gi|297732365|ref|ZP_06961483.1|  antitoxin [Mycobacterium tubercu...   140    4e-32
gi|297160783|gb|ADI10495.1|  hypothetical protein SBI_07375 [Stre...  48.1    5e-04
gi|253798375|ref|YP_003031376.1|  antitoxin [Mycobacterium tuberc...  47.8    6e-04
gi|15609682|ref|NP_217061.1|  hypothetical protein Rv2545 [Mycoba...  47.4    7e-04
gi|313659481|ref|ZP_07816361.1|  antitoxin [Mycobacterium tubercu...  47.4    7e-04
gi|254232666|ref|ZP_04925993.1|  conserved hypothetical protein [...  47.4    8e-04
gi|297199893|ref|ZP_06917290.1|  conserved hypothetical protein [...  45.4    0.002
gi|315504330|ref|YP_004083217.1|  hypothetical protein ML5_3552 [...  45.4    0.003
gi|302869193|ref|YP_003837830.1|  hypothetical protein Micau_4745...  45.1    0.004
gi|294994345|ref|ZP_06800036.1|  hypothetical protein Mtub2_07473...  44.7    0.004
gi|302544583|ref|ZP_07296925.1|  hypothetical protein SSOG_05008 ...  44.7    0.005
gi|311897823|dbj|BAJ30231.1|  hypothetical protein KSE_44480 [Kit...  42.4    0.021
gi|297193815|ref|ZP_06911213.1|  conserved hypothetical protein [...  42.4    0.024
gi|254388988|ref|ZP_05004219.1|  hypothetical protein SSCG_01406 ...  42.0    0.031
gi|284990201|ref|YP_003408755.1|  hypothetical protein Gobs_1668 ...  42.0    0.034
gi|311897888|dbj|BAJ30296.1|  hypothetical protein KSE_45130 [Kit...  41.2    0.049
gi|90423934|ref|YP_532304.1|  hypothetical protein RPC_2434 [Rhod...  41.2    0.049
gi|302536098|ref|ZP_07288440.1|  conserved hypothetical protein [...  41.2    0.052
gi|29832236|ref|NP_826870.1|  hypothetical protein SAV_5693 [Stre...  40.4    0.099
gi|115524558|ref|YP_781469.1|  hypothetical protein RPE_2551 [Rho...  40.0    0.11 
gi|254383840|ref|ZP_04999188.1|  hypothetical protein SSAG_03489 ...  40.0    0.12 
gi|254391932|ref|ZP_05007125.1|  hypothetical protein SSCG_04582 ...  38.5    0.29 
gi|217979807|ref|YP_002363954.1|  hypothetical protein Msil_3709 ...  38.5    0.34 
gi|167968773|ref|ZP_02551050.1|  hypothetical protein MtubH3_1235...  38.5    0.34 
gi|289761723|ref|ZP_06521101.1|  conserved hypothetical protein [...  38.5    0.35 
gi|326440327|ref|ZP_08215061.1|  hypothetical protein SclaA2_0464...  38.5    0.35 
gi|328882584|emb|CCA55823.1|  hypothetical protein SVEN_2537 [Str...  38.5    0.38 
gi|86609159|ref|YP_477921.1|  hypothetical protein CYB_1699 [Syne...  37.7    0.62 
gi|337281344|ref|YP_004620816.1|  hypothetical protein Rta_36810 ...  36.6    1.4  
gi|148656017|ref|YP_001276222.1|  hypothetical protein RoseRS_188...  35.8    2.4  
gi|15608698|ref|NP_216076.1|  hypothetical protein Rv1560 [Mycoba...  35.4    2.9  
gi|333989208|ref|YP_004521822.1|  hypothetical protein JDM601_056...  35.4    3.0  
gi|337767174|emb|CCB75885.1|  conserved protein of unknown functi...  35.4    3.0  
gi|304318060|ref|YP_003853205.1|  hypothetical protein Tthe_2672 ...  35.0    3.4  
gi|104780598|ref|YP_607096.1|  hypothetical protein PSEEN1414 [Ps...  35.0    3.4  
gi|167967386|ref|ZP_02549663.1|  hypothetical protein MtubH3_0485...  35.0    3.9  
gi|326329778|ref|ZP_08196098.1|  hypothetical protein NBCG_01211 ...  35.0    4.0  
gi|90426272|ref|YP_534642.1|  hypothetical protein RPC_4801 [Rhod...  34.7    4.5  
gi|238026723|ref|YP_002910954.1|  multi-sensor hybrid histidine k...  34.7    4.8  
gi|256389743|ref|YP_003111307.1|  hypothetical protein Caci_0522 ...  34.7    5.2  
gi|312115922|ref|YP_004013518.1|  hypothetical protein Rvan_3224 ...  34.7    5.4  
gi|345015828|ref|YP_004818182.1|  hypothetical protein Strvi_8594...  34.3    5.6  
gi|18121448|gb|AAK52344.1|  unknown [Burkholderia sacchari]           34.3    5.6  
gi|56130745|ref|YP_145648.1|  hypothetical protein pMOL30_117 [Ra...  33.5    9.9  


>gi|15609895|ref|NP_217274.1| hypothetical protein Rv2758c [Mycobacterium tuberculosis H37Rv]
 gi|15842296|ref|NP_337333.1| hypothetical protein MT2828 [Mycobacterium tuberculosis CDC1551]
 gi|31793932|ref|NP_856425.1| hypothetical protein Mb2779c [Mycobacterium bovis AF2122/97]
 52 more sequence titles
 Length=88

 Score =  178 bits (452),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN
Sbjct  1   MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60

Query  61  RMAENATGTQDEALVNAMWRDGHPENTA  88
           RMAENATGTQDEALVNAMWRDGHPENTA
Sbjct  61  RMAENATGTQDEALVNAMWRDGHPENTA  88


>gi|167968585|ref|ZP_02550862.1| hypothetical protein MtubH3_11328 [Mycobacterium tuberculosis 
H37Ra]
 gi|254551817|ref|ZP_05142264.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|294994148|ref|ZP_06799839.1| antitoxin [Mycobacterium tuberculosis 210]
 20 more sequence titles
 Length=75

 Score =  147 bits (370),  Expect = 7e-34, Method: Compositional matrix adjust.
 Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEA  73
           +TRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEA
Sbjct  1   MTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEA  60

Query  74  LVNAMWRDGHPENTA  88
           LVNAMWRDGHPENTA
Sbjct  61  LVNAMWRDGHPENTA  75


>gi|297732365|ref|ZP_06961483.1| antitoxin [Mycobacterium tuberculosis KZN R506]
 gi|307085454|ref|ZP_07494567.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|308364978|gb|EFP53829.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|323718605|gb|EGB27769.1| antitoxin [Mycobacterium tuberculosis CDC1551A]
Length=71

 Score =  140 bits (354),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  18  MIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNA  77
           MIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNA
Sbjct  1   MIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNA  60

Query  78  MWRDGHPENTA  88
           MWRDGHPENTA
Sbjct  61  MWRDGHPENTA  71


>gi|297160783|gb|ADI10495.1| hypothetical protein SBI_07375 [Streptomyces bingchenggensis 
BCW-1]
Length=71

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 25/49 (52%), Positives = 35/49 (72%), Gaps = 0/49 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAE  64
           RT+ID+DD++LA AA+  GTTTK  TV+AAL  A++     S +N +AE
Sbjct  3   RTVIDVDDEMLAEAAEIFGTTTKVATVNAALEDAIKRRKRASFLNWLAE  51


>gi|253798375|ref|YP_003031376.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|253319878|gb|ACT24481.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
Length=92

 Score = 47.8 bits (112),  Expect = 6e-04, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  7   LVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
           L VCS    RT IDIDD LLARA   LGTT  KD V AALRAA+R
Sbjct  49  LYVCSMS-RRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92


>gi|15609682|ref|NP_217061.1| hypothetical protein Rv2545 [Mycobacterium tuberculosis H37Rv]
 gi|15842081|ref|NP_337118.1| hypothetical protein MT2621 [Mycobacterium tuberculosis CDC1551]
 gi|31793728|ref|NP_856221.1| hypothetical protein Mb2575 [Mycobacterium bovis AF2122/97]
 42 more sequence titles
 Length=92

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  7   LVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
           L VCS    RT IDIDD LLARA   LGTT  KD V AALRAA+R
Sbjct  49  LYVCSMS-RRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  92


>gi|313659481|ref|ZP_07816361.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
Length=101

 Score = 47.4 bits (111),  Expect = 7e-04, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  7    LVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
            L VCS    RT IDIDD LLARA   LGTT  KD V AALRAA+R
Sbjct  58   LYVCSMS-RRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  101


>gi|254232666|ref|ZP_04925993.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366750|ref|ZP_04982793.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254551595|ref|ZP_05142042.1| hypothetical protein Mtube_14242 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 9 more sequence titles
 Length=101

 Score = 47.4 bits (111),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 30/45 (67%), Positives = 31/45 (69%), Gaps = 1/45 (2%)

Query  7    LVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
            L VCS    RT IDIDD LLARA   LGTT  KD V AALRAA+R
Sbjct  58   LYVCSMS-RRTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  101


>gi|297199893|ref|ZP_06917290.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197710358|gb|EDY54392.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=69

 Score = 45.4 bits (106),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/37 (63%), Positives = 29/37 (79%), Gaps = 0/37 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAAL  50
           +T+T+IDID+ LLA AA   GT TKKDTV+AALR  +
Sbjct  1   MTKTLIDIDEQLLAEAAIAFGTRTKKDTVNAALREGV  37


>gi|315504330|ref|YP_004083217.1| hypothetical protein ML5_3552 [Micromonospora sp. L5]
 gi|315410949|gb|ADU09066.1| Protein of unknown function DUF2191 [Micromonospora sp. L5]
Length=69

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 23/47 (49%), Positives = 33/47 (71%), Gaps = 0/47 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           ++RT++D+DDDLLA AA+ LGT TKK TV+AAL+  +     R   +
Sbjct  1   MSRTILDVDDDLLAEAAEILGTGTKKATVNAALQEVVNREKRREFAD  47


>gi|302869193|ref|YP_003837830.1| hypothetical protein Micau_4745 [Micromonospora aurantiaca ATCC 
27029]
 gi|302572052|gb|ADL48254.1| Protein of unknown function DUF2191 [Micromonospora aurantiaca 
ATCC 27029]
Length=69

 Score = 45.1 bits (105),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 23/47 (49%), Positives = 33/47 (71%), Gaps = 0/47 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           ++RT++D+DDDLLA AA+ LGT TKK TV+AAL+  +     R   +
Sbjct  1   MSRTILDVDDDLLAEAAEILGTGTKKATVNAALQEVVNREKRRDFAD  47


>gi|294994345|ref|ZP_06800036.1| hypothetical protein Mtub2_07473 [Mycobacterium tuberculosis 
210]
Length=39

 Score = 44.7 bits (104),  Expect = 0.004, Method: Compositional matrix adjust.
 Identities = 26/36 (73%), Positives = 27/36 (75%), Gaps = 0/36 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
           RT IDIDD LLARA   LGTT  KD V AALRAA+R
Sbjct  4   RTTIDIDDILLARAQAALGTTGLKDRVDAALRAAVR  39


>gi|302544583|ref|ZP_07296925.1| hypothetical protein SSOG_05008 [Streptomyces hygroscopicus ATCC 
53653]
 gi|302462201|gb|EFL25294.1| hypothetical protein SSOG_05008 [Streptomyces himastatinicus 
ATCC 53653]
Length=106

 Score = 44.7 bits (104),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 23/34 (68%), Positives = 27/34 (80%), Gaps = 0/34 (0%)

Query  13  GVTRTMIDIDDDLLARAAKELGTTTKKDTVHAAL  46
           G+ RT+ID+DDDLLA A   LGTTTK  TV+AAL
Sbjct  32  GMARTVIDLDDDLLAEAQTALGTTTKVGTVNAAL  65


>gi|311897823|dbj|BAJ30231.1| hypothetical protein KSE_44480 [Kitasatospora setae KM-6054]
Length=66

 Score = 42.4 bits (98),  Expect = 0.021, Method: Compositional matrix adjust.
 Identities = 21/38 (56%), Positives = 30/38 (79%), Gaps = 0/38 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
           +TRT+ID+DD+LLA A +  GT+TK  TV+AAL  A++
Sbjct  1   MTRTVIDLDDELLAEAQQLFGTSTKVATVNAALLEAVK  38


>gi|297193815|ref|ZP_06911213.1| conserved hypothetical protein [Streptomyces pristinaespiralis 
ATCC 25486]
 gi|297151963|gb|EDY65137.2| conserved hypothetical protein [Streptomyces pristinaespiralis 
ATCC 25486]
Length=82

 Score = 42.4 bits (98),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 39/62 (63%), Gaps = 1/62 (1%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENA-TGTQDE  72
           V+ T +++DDD+LA A + +GTTTKKDT++ AL   +        M  +AE A +G  DE
Sbjct  8   VSMTNVNLDDDVLAEAMRLMGTTTKKDTINGALLDYVHRLKRLEAMQDLAERAESGEFDE  67

Query  73  AL  74
           A+
Sbjct  68  AI  69


>gi|254388988|ref|ZP_05004219.1| hypothetical protein SSCG_01406 [Streptomyces clavuligerus ATCC 
27064]
 gi|294814924|ref|ZP_06773567.1| DUF2191 domain-containing protein [Streptomyces clavuligerus 
ATCC 27064]
 gi|326443295|ref|ZP_08218029.1| hypothetical protein SclaA2_19618 [Streptomyces clavuligerus 
ATCC 27064]
 gi|197702706|gb|EDY48518.1| hypothetical protein SSCG_01406 [Streptomyces clavuligerus ATCC 
27064]
 gi|294327523|gb|EFG09166.1| DUF2191 domain-containing protein [Streptomyces clavuligerus 
ATCC 27064]
Length=68

 Score = 42.0 bits (97),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 27/55 (50%), Positives = 35/55 (64%), Gaps = 3/55 (5%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATG  68
           +T T ID+DD+LLA+AA  LGT TKK TV+ ALR   R  A  + +  + E A G
Sbjct  1   MTTTQIDLDDELLAQAADILGTATKKATVNEALR---RLVALETQLRHLDELAAG  52


>gi|284990201|ref|YP_003408755.1| hypothetical protein Gobs_1668 [Geodermatophilus obscurus DSM 
43160]
 gi|284063446|gb|ADB74384.1| Protein of unknown function DUF2191 [Geodermatophilus obscurus 
DSM 43160]
Length=81

 Score = 42.0 bits (97),  Expect = 0.034, Method: Compositional matrix adjust.
 Identities = 29/76 (39%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATG-----  68
           V+RT IDIDDDL+A   +  G  TKKD V  ALR           M+ M  +  G     
Sbjct  6   VSRTNIDIDDDLIAGVMRRYGLATKKDAVDFALRQVSVVPMTAREMHAMRGSGWGADLED  65

Query  69  --TQDEALVNAMWRDG  82
             T++ A V+A W +G
Sbjct  66  LRTREGAEVSAQWGEG  81


>gi|311897888|dbj|BAJ30296.1| hypothetical protein KSE_45130 [Kitasatospora setae KM-6054]
Length=77

 Score = 41.2 bits (95),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 21/31 (68%), Positives = 25/31 (81%), Gaps = 0/31 (0%)

Query  17  TMIDIDDDLLARAAKELGTTTKKDTVHAALR  47
           T IDIDD+ LA A + +GTTTKKDTV+ ALR
Sbjct  4   TQIDIDDEALAAAMRLMGTTTKKDTVNNALR  34


>gi|90423934|ref|YP_532304.1| hypothetical protein RPC_2434 [Rhodopseudomonas palustris BisB18]
 gi|90105948|gb|ABD87985.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=67

 Score = 41.2 bits (95),  Expect = 0.049, Method: Compositional matrix adjust.
 Identities = 22/43 (52%), Positives = 26/43 (61%), Gaps = 0/43 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSL  58
           RT IDIDD L+A A +  G  TKKDTV  ALR  +R    R +
Sbjct  2   RTNIDIDDTLMAEAQEAAGKATKKDTVEQALRLMIRLKKQREV  44


>gi|302536098|ref|ZP_07288440.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302444993|gb|EFL16809.1| conserved hypothetical protein [Streptomyces sp. C]
Length=76

 Score = 41.2 bits (95),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 0/50 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAEN  65
           RT+ID+DD LLA AA+  GT TK  TV+AAL+ A+        ++ +AE 
Sbjct  3   RTVIDVDDALLAEAAELFGTKTKVATVNAALQDAVNRRKREEFLSWLAEG  52


>gi|29832236|ref|NP_826870.1| hypothetical protein SAV_5693 [Streptomyces avermitilis MA-4680]
 gi|29609354|dbj|BAC73405.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length=77

 Score = 40.4 bits (93),  Expect = 0.099, Method: Compositional matrix adjust.
 Identities = 19/31 (62%), Positives = 25/31 (81%), Gaps = 0/31 (0%)

Query  17  TMIDIDDDLLARAAKELGTTTKKDTVHAALR  47
           T ID+DD+ LA A + +G TTKK+TV+AALR
Sbjct  4   TQIDLDDEALAEAMRLMGVTTKKETVNAALR  34


>gi|115524558|ref|YP_781469.1| hypothetical protein RPE_2551 [Rhodopseudomonas palustris BisA53]
 gi|115518505|gb|ABJ06489.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length=67

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 22/43 (52%), Positives = 26/43 (61%), Gaps = 0/43 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSL  58
           RT I+IDD L+A A K  G  TKKDTV  ALR  +R    R +
Sbjct  2   RTNIEIDDTLMAEAQKAAGQATKKDTVEQALRLMVRLKKQRDV  44


>gi|254383840|ref|ZP_04999188.1| hypothetical protein SSAG_03489 [Streptomyces sp. Mg1]
 gi|194342733|gb|EDX23699.1| hypothetical protein SSAG_03489 [Streptomyces sp. Mg1]
Length=102

 Score = 40.0 bits (92),  Expect = 0.12, Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 0/50 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAEN  65
           RT+ID+D+D+L +AA+  GT TK  TV+AAL  A+     ++  + +AE 
Sbjct  3   RTVIDVDEDMLEQAAEVFGTKTKVATVNAALADAVNRRKRQAFFDWLAEG  52


>gi|254391932|ref|ZP_05007125.1| hypothetical protein SSCG_04582 [Streptomyces clavuligerus ATCC 
27064]
 gi|294811941|ref|ZP_06770584.1| Hypothetical protein SCLAV_1104 [Streptomyces clavuligerus ATCC 
27064]
 gi|197705612|gb|EDY51424.1| hypothetical protein SSCG_04582 [Streptomyces clavuligerus ATCC 
27064]
 gi|294324540|gb|EFG06183.1| Hypothetical protein SCLAV_1104 [Streptomyces clavuligerus ATCC 
27064]
Length=69

 Score = 38.5 bits (88),  Expect = 0.29, Method: Compositional matrix adjust.
 Identities = 20/35 (58%), Positives = 26/35 (75%), Gaps = 0/35 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAAL  50
           RT+ID+DD+ LA  A  LGT+ KK+TV+ ALR  L
Sbjct  16  RTVIDLDDEPLADVALVLGTSAKKETVNTALREVL  50


>gi|217979807|ref|YP_002363954.1| hypothetical protein Msil_3709 [Methylocella silvestris BL2]
 gi|217505183|gb|ACK52592.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length=70

 Score = 38.5 bits (88),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 22/41 (54%), Positives = 26/41 (64%), Gaps = 0/41 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAAR  56
           RT I+IDD+LLA A    G +TKK TV  ALRA +R    R
Sbjct  2   RTNIEIDDELLAEAMAATGLSTKKATVEEALRALVRQKRQR  42


>gi|167968773|ref|ZP_02551050.1| hypothetical protein MtubH3_12350 [Mycobacterium tuberculosis 
H37Ra]
 gi|253797152|ref|YP_003030153.1| hypothetical protein TBMG_03981 [Mycobacterium tuberculosis KZN 
1435]
 gi|254549169|ref|ZP_05139616.1| hypothetical protein Mtube_01676 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 6 more sequence titles
 Length=64

 Score = 38.5 bits (88),  Expect = 0.34, Method: Compositional matrix adjust.
 Identities = 20/32 (63%), Positives = 24/32 (75%), Gaps = 0/32 (0%)

Query  18  MIDIDDDLLARAAKELGTTTKKDTVHAALRAA  49
           ++DID+  L  A  ELGTTT KDTV+AALR A
Sbjct  5   LVDIDEQALNMARTELGTTTIKDTVNAALRQA  36


>gi|289761723|ref|ZP_06521101.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|289709229|gb|EFD73245.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
Length=72

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 19/46 (42%), Positives = 28/46 (61%), Gaps = 0/46 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLM  59
           ++RT IDIDD+L A   +  G TTK+  V  ALR  +R+  +R  +
Sbjct  6   MSRTNIDIDDELAAEVMRRFGLTTKRAAVDLALRRLVRSPLSREFL  51


>gi|326440327|ref|ZP_08215061.1| hypothetical protein SclaA2_04643 [Streptomyces clavuligerus 
ATCC 27064]
Length=66

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 20/35 (58%), Positives = 26/35 (75%), Gaps = 0/35 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAAL  50
           RT+ID+DD+ LA  A  LGT+ KK+TV+ ALR  L
Sbjct  13  RTVIDLDDEPLADVALVLGTSAKKETVNTALREVL  47


>gi|328882584|emb|CCA55823.1| hypothetical protein SVEN_2537 [Streptomyces venezuelae ATCC 
10712]
Length=78

 Score = 38.5 bits (88),  Expect = 0.38, Method: Compositional matrix adjust.
 Identities = 21/39 (54%), Positives = 26/39 (67%), Gaps = 0/39 (0%)

Query  26  LARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAE  64
           LA AAK LGTTTKKDT++ AL   +R    R+   R+AE
Sbjct  13  LAEAAKLLGTTTKKDTINTALEEVIRRHHRRAAFQRLAE  51


>gi|86609159|ref|YP_477921.1| hypothetical protein CYB_1699 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557701|gb|ABD02658.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length=67

 Score = 37.7 bits (86),  Expect = 0.62, Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (58%), Gaps = 0/45 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           RT I +DDDL+ RA +  G  TK++ +H ALR  +R      + N
Sbjct  2   RTNIVLDDDLIERARQVTGLKTKREVIHEALRVLIRLHEQAEIRN  46


>gi|337281344|ref|YP_004620816.1| hypothetical protein Rta_36810 [Ramlibacter tataouinensis TTB310]
 gi|334732421|gb|AEG94797.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length=101

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 20/37 (55%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  15  TRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
           TRT I +DD+L+A+A    G  TKK  V AALRA +R
Sbjct  3   TRTNIVLDDELVAQAMARAGVKTKKAAVEAALRAYVR  39


>gi|148656017|ref|YP_001276222.1| hypothetical protein RoseRS_1883 [Roseiflexus sp. RS-1]
 gi|148568127|gb|ABQ90272.1| hypothetical protein RoseRS_1883 [Roseiflexus sp. RS-1]
Length=67

 Score = 35.8 bits (81),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 16/36 (45%), Positives = 24/36 (67%), Gaps = 0/36 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALR  51
           RT I +DD+L+ RA +  G  TK++ +H ALR  +R
Sbjct  2   RTNIVLDDELIQRALQVTGLKTKREVIHEALRTLIR  37


>gi|15608698|ref|NP_216076.1| hypothetical protein Rv1560 [Mycobacterium tuberculosis H37Rv]
 gi|15841027|ref|NP_336064.1| hypothetical protein MT1611 [Mycobacterium tuberculosis CDC1551]
 gi|31792745|ref|NP_855238.1| hypothetical protein Mb1586 [Mycobacterium bovis AF2122/97]
 72 more sequence titles
 Length=72

 Score = 35.4 bits (80),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 18/46 (40%), Positives = 27/46 (59%), Gaps = 0/46 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLM  59
           ++RT IDIDD+L A   +  G TTK+  V  ALR  + +  +R  +
Sbjct  6   MSRTNIDIDDELAAEVMRRFGLTTKRAAVDLALRRLVGSPLSREFL  51


>gi|333989208|ref|YP_004521822.1| hypothetical protein JDM601_0568 [Mycobacterium sp. JDM601]
 gi|333485176|gb|AEF34568.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=70

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 19/44 (44%), Positives = 24/44 (55%), Gaps = 0/44 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLM  59
           RT I+IDD+L A   +  G TTKK  V  ALR  + A   R  +
Sbjct  3   RTNIEIDDELTAEVMRRFGVTTKKAAVDLALRRLVGAPLTREFL  46


>gi|337767174|emb|CCB75885.1| conserved protein of unknown function [Streptomyces cattleya 
NRRL 8057]
Length=73

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 18/31 (59%), Positives = 22/31 (71%), Gaps = 0/31 (0%)

Query  17  TMIDIDDDLLARAAKELGTTTKKDTVHAALR  47
           T ID+DDD LA+A +  G  TKKD V+ ALR
Sbjct  4   TTIDLDDDALAKAMRFSGGATKKDVVNEALR  34


>gi|304318060|ref|YP_003853205.1| hypothetical protein Tthe_2672 [Thermoanaerobacterium thermosaccharolyticum 
DSM 571]
 gi|302779562|gb|ADL70121.1| Protein of unknown function DUF2191 [Thermoanaerobacterium thermosaccharolyticum 
DSM 571]
Length=69

 Score = 35.0 bits (79),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 0/45 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           RT I IDD+L+  A K  G  TKK+ V+ AL+  +     ++LM+
Sbjct  2   RTNIIIDDELIKEALKITGIKTKKEIVNIALKELIENHKRKNLMD  46


>gi|104780598|ref|YP_607096.1| hypothetical protein PSEEN1414 [Pseudomonas entomophila L48]
 gi|95109585|emb|CAK14286.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length=230

 Score = 35.0 bits (79),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 25/83 (31%), Positives = 38/83 (46%), Gaps = 9/83 (10%)

Query  10   CSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRA---------SAARSLMN  60
            C PG TR         L RA  + G  +++++++   R ALRA           A  L  
Sbjct  105  CGPGGTRAWDLGRMSYLLRAGVKKGLVSREESLYLHYRLALRARHYYNRWDSYLAGYLFG  164

Query  61   RMAENATGTQDEALVNAMWRDGH  83
            +   NA+G+ DEAL   + R G+
Sbjct  165  KALWNASGSSDEALAANLERQGY  187


>gi|167967386|ref|ZP_02549663.1| hypothetical protein MtubH3_04852 [Mycobacterium tuberculosis 
H37Ra]
 gi|254550580|ref|ZP_05141027.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=67

 Score = 35.0 bits (79),  Expect = 3.9, Method: Compositional matrix adjust.
 Identities = 18/46 (40%), Positives = 27/46 (59%), Gaps = 0/46 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLM  59
           ++RT IDIDD+L A   +  G TTK+  V  ALR  + +  +R  +
Sbjct  1   MSRTNIDIDDELAAEVMRRFGLTTKRAAVDLALRRLVGSPLSREFL  46


>gi|326329778|ref|ZP_08196098.1| hypothetical protein NBCG_01211 [Nocardioidaceae bacterium Broad-1]
 gi|325952364|gb|EGD44384.1| hypothetical protein NBCG_01211 [Nocardioidaceae bacterium Broad-1]
Length=63

 Score = 35.0 bits (79),  Expect = 4.0, Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (55%), Gaps = 0/55 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATG  68
           +T T I ID +LLA A K  GTTT +  +  ALR  +   AA +  +R+ E   G
Sbjct  1   MTETSISIDKELLAEARKIAGTTTNQAAIDHALRDLVEREAASAEFDRIVERELG  55


>gi|90426272|ref|YP_534642.1| hypothetical protein RPC_4801 [Rhodopseudomonas palustris BisB18]
 gi|90108286|gb|ABD90323.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length=70

 Score = 34.7 bits (78),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 18/43 (42%), Positives = 25/43 (59%), Gaps = 0/43 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSL  58
           RT I IDD+L A+A +  G   K   +  AL+A + + AAR L
Sbjct  9   RTTIAIDDELFAKAQQYAGVKEKSAVIKKALQAYVESEAARRL  51


>gi|238026723|ref|YP_002910954.1| multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
Length=1248

 Score = 34.7 bits (78),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 20/65 (31%), Positives = 34/65 (53%), Gaps = 1/65 (1%)

Query  4    GYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMA  63
            G A  V  P +    + +D DL  +    L +   K T+H ++R +LRA AAR+++  +A
Sbjct  419  GLAFEVDCPALP-GPVHVDADLWEKIVSNLLSNAFKFTLHGSIRVSLRAGAARTVVFEVA  477

Query  64   ENATG  68
            +   G
Sbjct  478  DTGVG  482


>gi|256389743|ref|YP_003111307.1| hypothetical protein Caci_0522 [Catenulispora acidiphila DSM 
44928]
 gi|256355969|gb|ACU69466.1| hypothetical protein Caci_0522 [Catenulispora acidiphila DSM 
44928]
Length=78

 Score = 34.7 bits (78),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 16/33 (49%), Positives = 24/33 (73%), Gaps = 0/33 (0%)

Query  14  VTRTMIDIDDDLLARAAKELGTTTKKDTVHAAL  46
           +T+ + D D+ +LA A ++LGT T KDTV+ AL
Sbjct  1   MTKKLFDADEAILAEAQRQLGTATGKDTVNLAL  33


>gi|312115922|ref|YP_004013518.1| hypothetical protein Rvan_3224 [Rhodomicrobium vannielii ATCC 
17100]
 gi|311221051|gb|ADP72419.1| Protein of unknown function DUF2191 [Rhodomicrobium vannielii 
ATCC 17100]
Length=70

 Score = 34.7 bits (78),  Expect = 5.4, Method: Compositional matrix adjust.
 Identities = 17/44 (39%), Positives = 25/44 (57%), Gaps = 0/44 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLM  59
           RT ID+DD L+    +     TKK+ VH A+R  L+A   ++L 
Sbjct  2   RTNIDLDDTLIDEVMRIANVKTKKEAVHLAMREFLKAKKKKNLF  45


>gi|345015828|ref|YP_004818182.1| hypothetical protein Strvi_8594 [Streptomyces violaceusniger 
Tu 4113]
 gi|344042177|gb|AEM87902.1| Protein of unknown function DUF2191 [Streptomyces violaceusniger 
Tu 4113]
Length=83

 Score = 34.3 bits (77),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 18/31 (59%), Positives = 21/31 (68%), Gaps = 0/31 (0%)

Query  17  TMIDIDDDLLARAAKELGTTTKKDTVHAALR  47
           T IDIDDD LA A +  G  TKK+ V+ ALR
Sbjct  4   TQIDIDDDALAEAMRLSGAKTKKEMVNIALR  34


>gi|18121448|gb|AAK52344.1| unknown [Burkholderia sacchari]
Length=65

 Score = 34.3 bits (77),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 20/45 (45%), Positives = 26/45 (58%), Gaps = 0/45 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           RT I +DDDL+A+A    G   K   V  AL+A ++  AAR L N
Sbjct  2   RTTIVLDDDLIAKAQAYTGLEEKTAIVREALKALIQREAARRLAN  46


>gi|56130745|ref|YP_145648.1| hypothetical protein pMOL30_117 [Ralstonia metallidurans CH34]
 gi|94152561|ref|YP_581968.1| antitoxin of a toxin/antitoxin system [Cupriavidus metallidurans 
CH34]
 gi|56068735|emb|CAI11297.1| hypothetical protein [Cupriavidus metallidurans CH34]
 gi|93358931|gb|ABF13018.1| antitoxin of a toxin/antitoxin system [Cupriavidus metallidurans 
CH34]
Length=65

 Score = 33.5 bits (75),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 19/45 (43%), Positives = 27/45 (60%), Gaps = 0/45 (0%)

Query  16  RTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMN  60
           RT I +DD+LLA+A    G + K   V  AL+A ++  AA+ L N
Sbjct  2   RTTIALDDELLAKAQAYTGLSEKTAIVREALKALIQREAAKRLAN  46



Lambda     K      H
   0.317    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130095868320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40