BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2759c

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609896|ref|NP_217275.1|  hypothetical protein Rv2759c [Mycob...   265    2e-69
gi|256824143|ref|YP_003148103.1|  hypothetical protein Ksed_02550...   134    6e-30
gi|256826047|ref|YP_003150007.1|  hypothetical protein Ksed_22620...   125    3e-27
gi|84497913|ref|ZP_00996710.1|  hypothetical protein JNB_17538 [J...   116    9e-25
gi|84495502|ref|ZP_00994621.1|  hypothetical protein JNB_11889 [J...   113    1e-23
gi|120402183|ref|YP_952012.1|  PilT domain-containing protein [My...   107    8e-22
gi|293980661|ref|YP_003543419.1|  hypothetical protein SJA_P2-001...   106    2e-21
gi|298529281|ref|ZP_07016684.1|  PilT protein domain protein [Des...   103    8e-21
gi|116254471|ref|YP_770307.1|  hypothetical protein pRL100005 [Rh...   103    1e-20
gi|15607749|ref|NP_215123.1|  hypothetical protein Rv0609 [Mycoba...   102    2e-20
gi|227819246|ref|YP_002823217.1|  hypothetical protein NGR_b10110...   102    3e-20
gi|339499339|ref|YP_004697374.1|  PilT protein domain-containing ...   102    3e-20
gi|340625632|ref|YP_004744084.1|  hypothetical protein MCAN_06101...   101    4e-20
gi|241554096|ref|YP_002979309.1|  PilT protein domain protein [Rh...   101    4e-20
gi|167647416|ref|YP_001685079.1|  PilT domain-containing protein ...   100    6e-20
gi|336116293|ref|YP_004571059.1|  hypothetical protein MLP_06420 ...  98.2    4e-19
gi|334321234|ref|YP_004557774.1|  PilT protein domain-containing ...  98.2    4e-19
gi|334315170|ref|YP_004547789.1|  PilT protein domain-containing ...  97.8    4e-19
gi|258650323|ref|YP_003199479.1|  PilT protein domain-containing ...  94.0    6e-18
gi|318040907|ref|ZP_07972863.1|  hypothetical protein SCB01_04334...  93.6    9e-18
gi|153869463|ref|ZP_01999056.1|  conserved hypothetical protein [...  92.4    2e-17
gi|344341724|ref|ZP_08772640.1|  PilT protein domain protein [Thi...  91.7    4e-17
gi|92109698|ref|YP_571984.1|  PilT protein-like [Nitrobacter hamb...  90.9    5e-17
gi|318040914|ref|ZP_07972870.1|  hypothetical protein SCB01_04369...  90.9    6e-17
gi|114328764|ref|YP_745921.1|  putative cytoplasmic protein [Gran...  90.1    1e-16
gi|153007976|ref|YP_001369191.1|  PilT domain-containing protein ...  90.1    1e-16
gi|55980470|ref|YP_143767.1|  hypothetical protein TTHA0501 [Ther...  90.1    1e-16
gi|340776555|ref|ZP_08696498.1|  PilT protein-like protein [Aceto...  89.7    1e-16
gi|15964557|ref|NP_384910.1|  hypothetical protein SMc00900 [Sino...  89.7    1e-16
gi|15607764|ref|NP_215138.1|  hypothetical protein Rv0624 [Mycoba...  89.4    2e-16
gi|227819221|ref|YP_002823192.1|  hypothetical protein NGR_b09860...  89.0    2e-16
gi|153012093|ref|YP_001373304.1|  PilT domain-containing protein ...  88.6    3e-16
gi|167648431|ref|YP_001686094.1|  PilT domain-containing protein ...  88.6    3e-16
gi|241205313|ref|YP_002976409.1|  PilT protein domain protein [Rh...  88.2    3e-16
gi|116252798|ref|YP_768636.1|  hypothetical protein RL3054 [Rhizo...  88.2    4e-16
gi|299138782|ref|ZP_07031960.1|  PilT protein domain protein [Aci...  87.8    5e-16
gi|254431434|ref|ZP_05045137.1|  hypothetical protein CPCC7001_13...  87.8    5e-16
gi|254418811|ref|ZP_05032535.1|  hypothetical protein BBAL3_1121 ...  87.4    7e-16
gi|337266992|ref|YP_004611047.1|  PilT protein domain-containing ...  87.0    8e-16
gi|338822860|gb|EGP56828.1|  PilT domain-containing protein [Agro...  87.0    9e-16
gi|115526060|ref|YP_782971.1|  PilT domain-containing protein [Rh...  87.0    9e-16
gi|284041784|ref|YP_003392124.1|  PilT protein domain protein [Co...  85.1    3e-15
gi|325293169|ref|YP_004279033.1|  PilT domain-containing protein ...  85.1    3e-15
gi|15609119|ref|NP_216498.1|  hypothetical protein Rv1982c [Mycob...  85.1    3e-15
gi|220919621|ref|YP_002494924.1|  PilT protein domain protein [Me...  84.7    5e-15
gi|340626995|ref|YP_004745447.1|  hypothetical protein MCAN_20021...  84.3    5e-15
gi|254558657|ref|YP_003065752.1|  hypothetical protein METDI0004 ...  84.3    5e-15
gi|15841458|ref|NP_336495.1|  hypothetical protein MT2034 [Mycoba...  84.3    6e-15
gi|118472447|ref|YP_885674.1|  PilT domain-containing protein [My...  84.0    7e-15
gi|218295220|ref|ZP_03496056.1|  PilT protein domain protein [The...  84.0    8e-15


>gi|15609896|ref|NP_217275.1| hypothetical protein Rv2759c [Mycobacterium tuberculosis H37Rv]
 gi|15842297|ref|NP_337334.1| hypothetical protein MT2829 [Mycobacterium tuberculosis CDC1551]
 gi|31793933|ref|NP_856426.1| hypothetical protein Mb2780c [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=131

 Score =  265 bits (676),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 130/131 (99%), Positives = 131/131 (100%), Gaps = 0/131 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +IVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL
Sbjct  1    MIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD
Sbjct  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120

Query  121  FTHTDIRPACT  131
            FTHTDIRPACT
Sbjct  121  FTHTDIRPACT  131


>gi|256824143|ref|YP_003148103.1| hypothetical protein Ksed_02550 [Kytococcus sedentarius DSM 20547]
 gi|256687536|gb|ACV05338.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 
20547]
Length=130

 Score =  134 bits (336),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 68/129 (53%), Positives = 90/129 (70%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +IVD+SA+VAI+  E   Q L EA++++P + M+A +Y+E+  ++  R  P +SR  D L
Sbjct  1    MIVDSSALVAILLAEPERQALLEAIQQAPEAAMTAASYLEVGMVVDGRGNPVLSRQYDAL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L+  GI+V    A+QARVA  A+RD+GRGSGHPARLN GD  SYA A   G PLLF GDD
Sbjct  61   LEALGIEVVDTTAEQARVARAAHRDFGRGSGHPARLNFGDCLSYAAAVQDGVPLLFTGDD  120

Query  121  FTHTDIRPA  129
            F HTD+ PA
Sbjct  121  FIHTDVTPA  129


>gi|256826047|ref|YP_003150007.1| hypothetical protein Ksed_22620 [Kytococcus sedentarius DSM 20547]
 gi|256689440|gb|ACV07242.1| uncharacterized conserved protein [Kytococcus sedentarius DSM 
20547]
Length=131

 Score =  125 bits (313),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 67/129 (52%), Positives = 85/129 (66%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +IVD+SAIVA++ GE GA+ L  A+  +P  RMSA  YVE   ++ RR      R  D L
Sbjct  1    MIVDSSAIVAVLGGEEGAEGLLRAMVETPRVRMSAATYVECAVVIDRRASAATRRRFDEL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L   G++V  +  + A +A +AYRD+GR +G  ARLNLGD YSYALA   GEPLLF GDD
Sbjct  61   LQTLGVEVVPLTVEHALLAREAYRDFGRSTGSQARLNLGDCYSYALAAHAGEPLLFVGDD  120

Query  121  FTHTDIRPA  129
            FTHTD+  A
Sbjct  121  FTHTDLVAA  129


>gi|84497913|ref|ZP_00996710.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
 gi|84381413|gb|EAP97296.1| hypothetical protein JNB_17538 [Janibacter sp. HTCC2649]
Length=132

 Score =  116 bits (291),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 72/131 (55%), Positives = 92/131 (71%), Gaps = 4/131 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPE--ISRLVD  58
            +IVD+SAIVAI  GE       + L  +  S +SA  YVE C ++    RPE   +RL D
Sbjct  1    MIVDSSAIVAIHEGEPERARFLDVLAAARGSLISAATYVE-CGVVLDLKRPEQPTNRL-D  58

Query  59   RLLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRG  118
             LLD++ I+V A+  +QARVA +A+R YGRGSGHPA+LNLGD +SYALA  T EPLLF+G
Sbjct  59   ELLDEFDIKVVALTPEQARVARRAHRRYGRGSGHPAKLNLGDCFSYALAMSTDEPLLFKG  118

Query  119  DDFTHTDIRPA  129
            +DFTHTD+R A
Sbjct  119  EDFTHTDVRNA  129


>gi|84495502|ref|ZP_00994621.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
 gi|84384995|gb|EAQ00875.1| hypothetical protein JNB_11889 [Janibacter sp. HTCC2649]
Length=132

 Score =  113 bits (282),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 59/133 (45%), Positives = 86/133 (65%), Gaps = 3/133 (2%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSR--MSAPNYVELCAIMQRRDRPEISRLVD  58
            ++VDTSA+VAIV GE  A+  K+AL  +P     MS    VE   +++ R  P+ +R ++
Sbjct  1    MVVDTSALVAIVLGEPDAESFKDALRAAPPGSLVMSPVTAVEAAMVVEARQGPDAARELE  60

Query  59   RLLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRG  118
             L+    +++E +D DQ+  A + +R +G+G  HPA LNLGD + YALA+ TGE LLF+G
Sbjct  61   GLIATLFLRIEPLDGDQSAAAIEGWRRFGKGR-HPASLNLGDLFPYALARTTGEALLFKG  119

Query  119  DDFTHTDIRPACT  131
            DDF  TD+R A T
Sbjct  120  DDFARTDVRSALT  132


>gi|120402183|ref|YP_952012.1| PilT domain-containing protein [Mycobacterium vanbaalenii PYR-1]
 gi|119955001|gb|ABM12006.1| PilT protein domain protein [Mycobacterium vanbaalenii PYR-1]
Length=131

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 57/129 (45%), Positives = 82/129 (64%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +I D+SAI+AI+  E  A     AL  +   R+SA +Y+E   ++  +  P +SR +D L
Sbjct  1    MIADSSAIIAILRDEDDAVDYARALAAADVRRLSAASYLECGIVLDAQRDPVVSRALDEL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +D+  + +E V   QA++A +AY D+G+GSGHPA LN GD  SYALA    EPLL++G+D
Sbjct  61   IDEAAMTIEPVTERQAKLARRAYADFGKGSGHPAGLNFGDCLSYALALDRREPLLWKGND  120

Query  121  FTHTDIRPA  129
            F HT I  A
Sbjct  121  FGHTGIASA  129


>gi|293980661|ref|YP_003543419.1| hypothetical protein SJA_P2-00170 [Sphingobium japonicum UT26S]
 gi|292677678|dbj|BAI99193.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length=129

 Score =  106 bits (264),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 56/129 (44%), Positives = 79/129 (62%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +I+DTSA+VAI+  E  A    +A+  +   R+S  +YVEL  +++R+  PE  R  +  
Sbjct  1    MILDTSALVAILYREPEAATFAQAIHDADACRISVASYVELSMVIERQLGPEGMRQTEAF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
                GI +E V  D   +A QA+ D+G+G  H A LN GD +SYALA+ T EPLLF+G+D
Sbjct  61   FRRAGITIEPVTLDHGELARQAFLDFGKGR-HKAGLNFGDCFSYALAKATDEPLLFKGND  119

Query  121  FTHTDIRPA  129
            F  TDI  A
Sbjct  120  FALTDIEAA  128


>gi|298529281|ref|ZP_07016684.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
 gi|298510717|gb|EFI34620.1| PilT protein domain protein [Desulfonatronospira thiodismutans 
ASO3-1]
Length=130

 Score =  103 bits (257),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 53/126 (43%), Positives = 82/126 (66%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            ++ DTSAI+AI++GE  A VL   +  SP+  MS+ + +E   +++ R      R +D  
Sbjct  1    MVSDTSAIIAILTGEPEADVLTRVIAESPDVMMSSFSVLETGIVLEARKGEAGGRELDLF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    ++V  +D++Q R+A +A+R +G+G  HPA LN+GD  +YALA+ TG PLLF+G D
Sbjct  61   LQRARVRVMPLDSEQVRIAREAWRRFGKGR-HPAGLNIGDCCAYALAKSTGAPLLFKGHD  119

Query  121  FTHTDI  126
            F+ TDI
Sbjct  120  FSKTDI  125


>gi|116254471|ref|YP_770307.1| hypothetical protein pRL100005 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|115259119|emb|CAK10230.1| conserved hypothetical PIN domain protein [Rhizobium leguminosarum 
bv. viciae 3841]
Length=128

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 80/129 (63%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +I+DTSA+VAI+  E  A    + +  +  +R+S  NYVEL  +++ +  P+  R  D  
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQADAF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
                GI +E V  +   +A QA+ D+G+G  H A LN GD ++YALA+ +GEPLLF+G+D
Sbjct  61   FRRAGIIIEPVTLEHGELARQAFLDFGKGR-HKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FTHTDIRPA  129
            F  TD+R A
Sbjct  120  FAQTDVRAA  128


>gi|15607749|ref|NP_215123.1| hypothetical protein Rv0609 [Mycobacterium tuberculosis H37Rv]
 gi|15840009|ref|NP_335046.1| hypothetical protein MT0638 [Mycobacterium tuberculosis CDC1551]
 gi|31791791|ref|NP_854284.1| hypothetical protein Mb0625 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=133

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 61/129 (48%), Positives = 83/129 (65%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +IVDTSAI+AI+  E  A    +AL  +   R+SA +Y+E   ++  +  P ISR +D L
Sbjct  1    MIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +++    VE V   QAR+A  AY D+GRGSGHPA LN GD  SYALA    EPLL++G+D
Sbjct  61   IEEAEFVVEPVTERQARLARAAYADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120

Query  121  FTHTDIRPA  129
            F HT ++ A
Sbjct  121  FGHTGVQRA  129


>gi|227819246|ref|YP_002823217.1| hypothetical protein NGR_b10110 [Sinorhizobium fredii NGR234]
 gi|227338245|gb|ACP22464.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=128

 Score =  102 bits (253),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 55/129 (43%), Positives = 83/129 (65%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSAI+AI   E  A+  ++ +  +P   +SA   +EL  +++ R     +  +D  
Sbjct  1    MVIDTSAILAIAFNEPEAETYEQKVVDAPRRFISAATVLELAIVIEARLGEAGAAELDLW  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L   G++V AVDA+Q  VA +A+R YG+G  HPA LN GD +SYALA+   EPLL++GDD
Sbjct  61   LYKAGVEVVAVDAEQIAVARRAWRSYGKGR-HPAGLNYGDCFSYALARTRNEPLLYKGDD  119

Query  121  FTHTDIRPA  129
            F+ TDI+ A
Sbjct  120  FSRTDIQAA  128


>gi|339499339|ref|YP_004697374.1| PilT protein domain-containing protein [Spirochaeta caldaria 
DSM 7334]
 gi|338833688|gb|AEJ18866.1| PilT protein domain protein [Spirochaeta caldaria DSM 7334]
Length=131

 Score =  102 bits (253),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 81/126 (65%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            ++VD+SAI+AI+ GES A +  +AL       +SA N++E+  +++ R        +  L
Sbjct  1    MVVDSSAILAILLGESDADLYIDALCSGERLLISAVNHLEVAIVIEARKGAIGGESLHSL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +   GI+V  +DA QA +A  A+R YG+G  HPA LNLGD  +YALA+   +PLL++GDD
Sbjct  61   MTHSGIEVLPLDASQAEIALAAWRTYGKGR-HPAALNLGDCAAYALAKTLNQPLLYKGDD  119

Query  121  FTHTDI  126
            F+ TDI
Sbjct  120  FSKTDI  125


>gi|340625632|ref|YP_004744084.1| hypothetical protein MCAN_06101 [Mycobacterium canettii CIPT 
140010059]
 gi|340003822|emb|CCC42950.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=133

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 60/129 (47%), Positives = 83/129 (65%), Gaps = 0/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +IVDTSAI+AI+  E  A    +AL  +   R+SA +Y+E   ++  +  P ISR +D L
Sbjct  1    MIVDTSAIIAILRDEDDAAAYADALANADVRRLSAASYLECGIVLDSQRDPVISRALDEL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +++    VE V   QAR+A  A+ D+GRGSGHPA LN GD  SYALA    EPLL++G+D
Sbjct  61   VEEAEFIVEPVTERQARLARAAFADFGRGSGHPAGLNFGDCLSYALAIDRREPLLWKGND  120

Query  121  FTHTDIRPA  129
            F HT ++ A
Sbjct  121  FGHTGVQRA  129


>gi|241554096|ref|YP_002979309.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240863402|gb|ACS61064.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=128

 Score =  101 bits (251),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 52/129 (41%), Positives = 80/129 (63%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +I+DTSA+VAI+  E  A    + +  +  +R+S  NYVEL  +++ +  P+  R  +  
Sbjct  1    MIIDTSALVAILYREPEAASFVKIIHDAELTRISVANYVELSMVVEGQLGPDGMRQAEAF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
                GI +E V  +   +A QA+ D+G+G  H A LN GD ++YALA+ +GEPLLF+G+D
Sbjct  61   FRRAGIIIEPVTLEHCELARQAFLDFGQGR-HKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FTHTDIRPA  129
            F  TD+R A
Sbjct  120  FAQTDVRAA  128


>gi|167647416|ref|YP_001685079.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167349846|gb|ABZ72581.1| PilT protein domain protein [Caulobacter sp. K31]
Length=132

 Score =  100 bits (250),  Expect = 6e-20, Method: Compositional matrix adjust.
 Identities = 58/132 (44%), Positives = 81/132 (62%), Gaps = 6/132 (4%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            ++VDTSA++AIV  E    V  EA+ R P   MSA   VE   +      PEI+    +L
Sbjct  2    IVVDTSALMAIVLNEVDRDVFTEAMVRQPRKLMSAATVVEAAQVYAMAFGPEIA--AGKL  59

Query  61   LDDY-GIQVEAVDA--DQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFR  117
             DD   +++E ++   + AR+A +A   +GRG  H A+LN GD +SYALA+V+G PLLF+
Sbjct  60   YDDLRMLRIEVINLTDEHARIAVEAAMRFGRGR-HRAKLNFGDCFSYALAKVSGLPLLFK  118

Query  118  GDDFTHTDIRPA  129
            G+DFT TDI  A
Sbjct  119  GNDFTQTDIESA  130


>gi|336116293|ref|YP_004571059.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
 gi|334684071|dbj|BAK33656.1| hypothetical protein MLP_06420 [Microlunatus phosphovorus NM-1]
Length=133

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 56/127 (45%), Positives = 83/127 (66%), Gaps = 2/127 (1%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERS-PNSRMSAPNYVELCAIMQRRDRPEISRLVDR  59
            V+VDTSA++A++ GE  A    +AL R+  +  MSA + VE   +++ R  P+ +  ++ 
Sbjct  3    VVVDTSAVLAVLLGEPDASRYADALSRNIGDLHMSAVSLVETRIVLESRKGPDAAADLET  62

Query  60   LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD  119
            L+    I+VEAV ADQA  A  A+R +G+G  HPARLNLGD +SYAL +     LL++GD
Sbjct  63   LIARVSIRVEAVTADQADRAWGAWRRFGKGC-HPARLNLGDCFSYALVRALRGNLLYKGD  121

Query  120  DFTHTDI  126
            DF+ TD+
Sbjct  122  DFSQTDV  128


>gi|334321234|ref|YP_004557774.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334100022|gb|AEG58030.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=128

 Score = 98.2 bits (243),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 50/126 (40%), Positives = 78/126 (62%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +IVDTSA+VAI+  E  A      +  +  +R+S  +Y+EL  +++ +  P+  R  +  
Sbjct  1    MIVDTSALVAILYREPQAARFVNYIHDAETTRISVASYIELSMVVESQLGPDGMRQAEAF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
                GI VE V  +   +A QA+ D+G+G  H A LN GD ++YALA+ +GEPLLF+G+D
Sbjct  61   FRRAGIIVEPVTLEHGELARQAFLDFGKGR-HKAGLNFGDCFAYALAKASGEPLLFKGND  119

Query  121  FTHTDI  126
            F+ TD+
Sbjct  120  FSQTDV  125


>gi|334315170|ref|YP_004547789.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|334094164|gb|AEG52175.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
Length=131

 Score = 97.8 bits (242),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 75/126 (60%), Gaps = 0/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            ++VD+SA+VAI   E  A  L +A+  +    MSA N  E   I++ R  PE +    R 
Sbjct  2    MVVDSSAVVAIFQAEDDALPLADAMASADQLVMSAVNAHETAMILRARGGPESAEDFWRF  61

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L   GI+V   + +QAR A++A+  +G+G    ARLNL D  +YALA+    PLLF+GDD
Sbjct  62   LSVNGIEVAPFNEEQAREASEAFGRFGKGIHSKARLNLADCAAYALAKSLSAPLLFKGDD  121

Query  121  FTHTDI  126
            F HTDI
Sbjct  122  FIHTDI  127


>gi|258650323|ref|YP_003199479.1| PilT protein domain-containing protein [Nakamurella multipartita 
DSM 44233]
 gi|258553548|gb|ACV76490.1| PilT protein domain protein [Nakamurella multipartita DSM 44233]
Length=133

 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 57/130 (44%), Positives = 77/130 (60%), Gaps = 2/130 (1%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNS-RMSAPNYVELCAIMQRRDRPEISRLVDR  59
            V++DTSA+ A++ GE  A+    AL R      +SA   VEL  +++ R   E     + 
Sbjct  4    VVLDTSAVAAVIFGEPDAEAFAAALTRHGGELSISAVTRVELEIVLEARQGSEAVSDAEA  63

Query  60   LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD  119
            + D  G+  E VDA QA  A  A+R +G+G  HPA LNLGD +SYALA+  G PLLF+G+
Sbjct  64   MFDRLGVITEPVDAAQAGAAFAAWRRFGKGR-HPAGLNLGDCFSYALARAAGAPLLFKGN  122

Query  120  DFTHTDIRPA  129
            DF  TDI  A
Sbjct  123  DFAQTDIASA  132


>gi|318040907|ref|ZP_07972863.1| hypothetical protein SCB01_04334 [Synechococcus sp. CB0101]
Length=132

 Score = 93.6 bits (231),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 50/130 (39%), Positives = 77/130 (60%), Gaps = 1/130 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++D SA++AI+  E   Q    A+  + +  +SA   VEL  +++ R   +    +D  
Sbjct  1    MVIDPSAVLAILQNEPERQAFNAAIASADHCALSAALLVELSIVIEARYGSDGQGDLDLF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L+   I + ++D  QA +A  A+  YG+G  H A LNLGD +SYA AQ   +PLLF+G D
Sbjct  61   LNTAQISIVSLDRGQAEIARAAFARYGKGR-HRASLNLGDCFSYARAQWLEQPLLFKGHD  119

Query  121  FTHTDIRPAC  130
            F HTD++PAC
Sbjct  120  FCHTDLQPAC  129


>gi|153869463|ref|ZP_01999056.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074054|gb|EDN70954.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length=131

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 48/127 (38%), Positives = 81/127 (64%), Gaps = 1/127 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA++AI+  E  A+   +A+  +    +SA + +E   +++ R      + +D L
Sbjct  1    MVIDTSALIAILLREPEAEKFAKAIISNRKRLLSAFSALETGVVIEARKGNPGKQELDLL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    I + A++ +Q ++A +A+R +G+G  HPA+LNLGD  SYALA+   EPLLF+G+D
Sbjct  61   LSYTKIDIVALNDEQVQMAMEAWRKFGKGH-HPAKLNLGDCCSYALAKYFDEPLLFKGND  119

Query  121  FTHTDIR  127
            F  TDI+
Sbjct  120  FNQTDIK  126


>gi|344341724|ref|ZP_08772640.1| PilT protein domain protein [Thiocapsa marina 5811]
 gi|343798327|gb|EGV16285.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=135

 Score = 91.7 bits (226),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 0/130 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA+VAIV GE   +   + ++++P + +S P  +E   ++  R       L+D L
Sbjct  2    IVIDTSALVAIVFGEPEREAFVDIIQKAPRALISTPTALEARMVVHGRRGERAVVLLDDL  61

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L     ++ A    + + A  A+  YGRGSGH A LN GD +SYALA+V G PLLF+G+D
Sbjct  62   LRLPMFELVAPGKAELQAAFAAFVAYGRGSGHAAGLNYGDLFSYALAKVRGLPLLFKGED  121

Query  121  FTHTDIRPAC  130
            F+ TDI P  
Sbjct  122  FSQTDILPVW  131


>gi|92109698|ref|YP_571984.1| PilT protein-like [Nitrobacter hamburgensis X14]
 gi|91802780|gb|ABE65152.1| PilT protein-like [Nitrobacter hamburgensis X14]
Length=128

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 50/129 (39%), Positives = 76/129 (59%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTS IVAI   E  A   +E +   P   +SA   +E   +++ R        +D  
Sbjct  1    MVIDTSPIVAIFFNEPDAARFRERIADDPVRLISAATVLEAAMVIEARLGEAGGTELDLW  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    +++  V A+ A  A +A+R YG+G  HPA LN GD +SYALA ++GEPLL++G+D
Sbjct  61   LHKADVEIVPVTAEHADQARRAWRRYGKGR-HPAGLNFGDCFSYALAALSGEPLLYKGND  119

Query  121  FTHTDIRPA  129
            F+ TDI+ A
Sbjct  120  FSQTDIKAA  128


>gi|318040914|ref|ZP_07972870.1| hypothetical protein SCB01_04369 [Synechococcus sp. CB0101]
Length=135

 Score = 90.9 bits (224),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 49/129 (38%), Positives = 77/129 (60%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++D SA++AI+  E        A+  + +  +SA + VEL  +++ R   +    +D  
Sbjct  1    MVIDPSAVLAILQNEPERPAFNAAIASADHCALSAASLVELSIVIEARYGSDGQGDLDLF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    I + ++D +QA +A  A+  YG+G  H A LNLGD +SYALAQ   +PLLF+GDD
Sbjct  61   LSTAQISIVSLDREQAEIARAAFARYGKGR-HRASLNLGDCFSYALAQWLEQPLLFKGDD  119

Query  121  FTHTDIRPA  129
            F HTD++ A
Sbjct  120  FCHTDLQAA  128


>gi|114328764|ref|YP_745921.1| putative cytoplasmic protein [Granulibacter bethesdensis CGDNIH1]
 gi|114316938|gb|ABI62998.1| hypothetical cytosolic protein [Granulibacter bethesdensis CGDNIH1]
Length=141

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 75/129 (59%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +I+DTSA++AIV GE       EAL  +   RMSA N++E   +++ +         D  
Sbjct  1    MILDTSALLAIVLGEPDGPRYLEALVAAERPRMSAANWLEASMMVEEKGGRLAGLRFDEF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +   GI++  V A+QA VA  A+R +GR   H  RLN GD  +YALA+   + LL++G D
Sbjct  61   IRAAGIEIVPVSAEQATVARGAWRYFGRFR-HAHRLNYGDCLAYALAKTESDRLLYKGRD  119

Query  121  FTHTDIRPA  129
            F HTDI PA
Sbjct  120  FDHTDIEPA  128


>gi|153007976|ref|YP_001369191.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559864|gb|ABS13362.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=142

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 56/135 (42%), Positives = 77/135 (58%), Gaps = 4/135 (2%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRR----DRPEISRL  56
            +IVD SAI+AI+  E  A    +AL+      +SA NYVE   ++  R    DR      
Sbjct  2    MIVDASAIIAILFDEVEAPECMDALQSDTARLISAVNYVEAGTVLAGRIREGDRHAAIAD  61

Query  57   VDRLLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLF  116
            +D  L D+GI V ++D   AR A +A  +YG+G G  A LN GD ++YALA+    PLL+
Sbjct  62   LDAFLADFGILVASIDDRLARAAMKARVEYGKGFGTRAGLNFGDCFAYALAKRHSAPLLY  121

Query  117  RGDDFTHTDIRPACT  131
             GDDF  TDI+ A +
Sbjct  122  VGDDFALTDIQSALS  136


>gi|55980470|ref|YP_143767.1| hypothetical protein TTHA0501 [Thermus thermophilus HB8]
 gi|55771883|dbj|BAD70324.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length=130

 Score = 90.1 bits (222),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 51/126 (41%), Positives = 72/126 (58%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA++ I+  E G + L E L R+   +++AP   E   ++  R   E   L+  L
Sbjct  1    MVLDTSALLGILFREEGYEELLEQLRRTRPHKVAAPTLAEAGIVLGARLGFERVHLLFEL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L +   ++       AR A  AYR YGRG  HPA LN GD  SYALA+V GEPLL++G  
Sbjct  61   LTELQAEIVPFTERHAREAISAYRRYGRGK-HPAGLNFGDCLSYALARVEGEPLLYKGQG  119

Query  121  FTHTDI  126
            F  TD+
Sbjct  120  FDRTDL  125


>gi|340776555|ref|ZP_08696498.1| PilT protein-like protein [Acetobacter aceti NBRC 14818]
Length=141

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 48/129 (38%), Positives = 76/129 (59%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISR---LV  57
            ++VDTSA++AI   E  A      +    +  +SA   VE   +++   +   +R    +
Sbjct  2    IVVDTSAVIAIFRQEPEAADFATRIGNDDDPVISAATVVEASLVLRGLKQISPTRAEAWL  61

Query  58   DRLLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFR  117
            D  +   G+++E V  +QA +A  A+  +G+G+GHPA LN GD +SYALA+  G PLLF+
Sbjct  62   DEFIRIAGMRIEPVTPEQAALARDAHIRFGKGTGHPAGLNYGDCFSYALAKAMGAPLLFK  121

Query  118  GDDFTHTDI  126
            G+DFT TD+
Sbjct  122  GEDFTRTDV  130


>gi|15964557|ref|NP_384910.1| hypothetical protein SMc00900 [Sinorhizobium meliloti 1021]
 gi|334315270|ref|YP_004547889.1| PilT protein domain-containing protein [Sinorhizobium meliloti 
AK83]
 gi|15073735|emb|CAC45376.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|333810691|gb|AEG03360.1| PilT protein domain protein [Sinorhizobium meliloti BL225C]
 gi|334094264|gb|AEG52275.1| PilT protein domain protein [Sinorhizobium meliloti AK83]
 gi|336031808|gb|AEH77740.1| hypothetical protein SM11_chr0459 [Sinorhizobium meliloti SM11]
Length=128

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 72/126 (58%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSAI AI   E  A   +E +   P   +SA   +E   +++ R        +D  
Sbjct  1    MVIDTSAIAAIAFNEQEAGSFREKIADDPVRLISAATALEAAMVIETRLGEAAGAELDLW  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    +++ AV A+    A +A+R +G+G  HPA LN GD +SYALA +T EPLLF+G D
Sbjct  61   LYKANVEIVAVTAEHMDQARRAWRRFGKGR-HPAGLNFGDCFSYALAFLTNEPLLFKGSD  119

Query  121  FTHTDI  126
            F+ TDI
Sbjct  120  FSQTDI  125


>gi|15607764|ref|NP_215138.1| hypothetical protein Rv0624 [Mycobacterium tuberculosis H37Rv]
 gi|15840025|ref|NP_335062.1| hypothetical protein MT0652 [Mycobacterium tuberculosis CDC1551]
 gi|31791806|ref|NP_854299.1| hypothetical protein Mb0640 [Mycobacterium bovis AF2122/97]
 80 more sequence titles
 Length=131

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 54/126 (43%), Positives = 79/126 (63%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA+VA++S E  A+  + A+E      MS  +Y+E   +++ R      R +D  
Sbjct  1    MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLW  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    + + AV ADQA  A  AYR YG+G  H A LN GD +SY LA+++G+PLLF+G+D
Sbjct  61   LHRAAVDLVAVHADQADAARAAYRTYGKGR-HRAGLNYGDCFSYGLAKISGQPLLFKGED  119

Query  121  FTHTDI  126
            F HTDI
Sbjct  120  FQHTDI  125


>gi|227819221|ref|YP_002823192.1| hypothetical protein NGR_b09860 [Sinorhizobium fredii NGR234]
 gi|227338220|gb|ACP22439.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length=145

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 55/145 (38%), Positives = 78/145 (54%), Gaps = 16/145 (11%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAP--------NYVELCAIMQRRDR-P  51
            + +D SAIVAI++GE  A  L   +E S   +  +P        +   + +I Q  DR P
Sbjct  1    MFLDASAIVAILAGEEDAGYLLAKIEMSQKPKFYSPLSMFEAVISLARIISISQFGDRAP  60

Query  52   EISRLVDRLLDDYGIQVEAVDADQA-------RVAAQAYRDYGRGSGHPARLNLGDTYSY  104
                L+DR+ +D  + +E + A +        R A +A R+YGR   HPARLN  D +SY
Sbjct  61   TPPELIDRVQEDVAMFMETIGAREMSMNGSLHRKAIEAARNYGRFVAHPARLNFADCFSY  120

Query  105  ALAQVTGEPLLFRGDDFTHTDIRPA  129
            A A+    PLLF+GDDF+ TDI  A
Sbjct  121  ACAKEHRLPLLFKGDDFSQTDIEAA  145


>gi|153012093|ref|YP_001373304.1| PilT domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563981|gb|ABS17475.1| PilT protein domain protein [Ochrobactrum anthropi ATCC 49188]
Length=127

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 51/127 (41%), Positives = 71/127 (56%), Gaps = 4/127 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            + VDTSA++AIV  E   +    A+ER+    +SA    E   +  RR+   +   VD L
Sbjct  2    IAVDTSALMAIVLNEPKGEACMTAIERADELLISAGTVTEALIVAARRN---VGEEVDAL  58

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +   G ++ +V A  AR  A AY  +G+G  HPA LN GD +SY +A   G PLL+ GDD
Sbjct  59   ISGLGFEIVSVTAASARRVANAYARWGKGI-HPASLNYGDCFSYEVAHEHGCPLLYVGDD  117

Query  121  FTHTDIR  127
            F  TD+R
Sbjct  118  FVQTDLR  124


>gi|167648431|ref|YP_001686094.1| PilT domain-containing protein [Caulobacter sp. K31]
 gi|167350861|gb|ABZ73596.1| PilT protein domain protein [Caulobacter sp. K31]
Length=131

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 54/132 (41%), Positives = 75/132 (57%), Gaps = 8/132 (6%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA+VAI + E       E LE + N  +S  NYVE   ++  R         D  
Sbjct  3    LVIDTSALVAIATEEPECDSFIEVLEAADNLLISPMNYVEAGVVLVGRRFFPSRETFDEW  62

Query  61   LDDYGIQVEA---VDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFR  117
            L +Y IQV A   +DA    +A  AY  +G+G  HPA+LNL D ++YALA+    PLL++
Sbjct  63   LSNYRIQVAAEPVIDA----LALDAYLSFGKGR-HPAKLNLADCFAYALAKQLDAPLLYK  117

Query  118  GDDFTHTDIRPA  129
            GDDF  TD+R A
Sbjct  118  GDDFPLTDVRSA  129


>gi|241205313|ref|YP_002976409.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
 gi|240859203|gb|ACS56870.1| PilT protein domain protein [Rhizobium leguminosarum bv. trifolii 
WSM1325]
Length=127

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 75/129 (59%), Gaps = 4/129 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            + VDTSA++AIV GE  A  L   LE   +  +SA    E   +  RR+   +   +++L
Sbjct  2    IAVDTSALMAIVLGEPQADALIAVLEAEDDLLISAGTVAEALIVSARRN---VGDEMEQL  58

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +D  G ++ AV    AR  A+AYR +G+G+ HPA LN GD ++Y +A+  G  LLF GDD
Sbjct  59   IDGLGFEIVAVTPASARRIAEAYRTWGKGA-HPASLNFGDCFAYEVAREHGCRLLFVGDD  117

Query  121  FTHTDIRPA  129
            F  TDI  A
Sbjct  118  FVRTDIENA  126


>gi|116252798|ref|YP_768636.1| hypothetical protein RL3054 [Rhizobium leguminosarum bv. viciae 
3841]
 gi|115257446|emb|CAK08542.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 
3841]
Length=127

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 53/129 (42%), Positives = 75/129 (59%), Gaps = 4/129 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            + VDTSA++AIV GE  A  L   LE   +  +SA    E   +  RR+   +   +++L
Sbjct  2    IAVDTSALMAIVLGEPQADALIAVLEAEDDLLISAGTVAEALIVSARRN---VDDEMEQL  58

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +D  G ++ AV    AR  A+AYR +G+G+ HPA LN GD ++Y +A+  G  LLF GDD
Sbjct  59   IDGLGFEIVAVTPASARRIAEAYRTWGKGA-HPASLNFGDCFAYEVAREHGCRLLFVGDD  117

Query  121  FTHTDIRPA  129
            F  TDI  A
Sbjct  118  FAKTDIENA  126


>gi|299138782|ref|ZP_07031960.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298599418|gb|EFI55578.1| PilT protein domain protein [Acidobacterium sp. MP5ACTX8]
Length=128

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 73/126 (58%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++D+SA+VAI+  E  A +   A+       +SA   VE   +M RR  P+    +D +
Sbjct  1    MVIDSSALVAILLAEPDASIYISAILNDVTRLISAATLVETSIVMIRRREPDAIAALDAV  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +    + V  VD +QA +A Q +R +G+G    A LN GD +SYALA    EPLLF+G+D
Sbjct  61   VARLQLTVIPVDREQALLARQGFRRFGKGLDR-AGLNFGDCFSYALAMHLNEPLLFKGND  119

Query  121  FTHTDI  126
            FT TD+
Sbjct  120  FTFTDV  125


>gi|254431434|ref|ZP_05045137.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
 gi|197625887|gb|EDY38446.1| hypothetical protein CPCC7001_1325 [Cyanobium sp. PCC 7001]
Length=133

 Score = 87.8 bits (216),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 54/131 (42%), Positives = 80/131 (62%), Gaps = 1/131 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++D SA+VAI+  E   +   EA+  +    +SA + VEL  +++ +  P+    +D  
Sbjct  1    MVIDPSALVAILLNEPERRAFIEAIAAAEVCWLSAASLVELSIVIEVKLGPDGLDDLDLF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L   G++  A D DQA +A  A++ +G+G  HPA LNLGD  +YALA+V   PLLF+G D
Sbjct  61   LATAGVETVAFDHDQALIARAAFQRFGKGR-HPAGLNLGDCCAYALARVREAPLLFKGRD  119

Query  121  FTHTDIRPACT  131
            F HTDIR A T
Sbjct  120  FVHTDIRSALT  130


>gi|254418811|ref|ZP_05032535.1| hypothetical protein BBAL3_1121 [Brevundimonas sp. BAL3]
 gi|196184988|gb|EDX79964.1| hypothetical protein BBAL3_1121 [Brevundimonas sp. BAL3]
Length=130

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 50/129 (39%), Positives = 78/129 (61%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            ++VD SA+VAI++GE  A    + L  +P S +S   + E     +R   P+  + +  L
Sbjct  2    IVVDASALVAILAGEPEADAFIKLLVETP-SLLSPLGFWETTVAARRVLGPDGQQSLLAL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            +D   I++ A   + AR+A +A   +G+ +  PARLNLGD ++YALA+    PLL++GDD
Sbjct  61   MDALRIEITAAGGETARIAVEAETRFGKRT--PARLNLGDCFAYALAKERNLPLLYKGDD  118

Query  121  FTHTDIRPA  129
            F+ TDI PA
Sbjct  119  FSRTDIEPA  127


>gi|337266992|ref|YP_004611047.1| PilT protein domain-containing protein [Mesorhizobium opportunistum 
WSM2075]
 gi|336027302|gb|AEH86953.1| PilT protein domain protein [Mesorhizobium opportunistum WSM2075]
Length=129

 Score = 87.0 bits (214),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 49/130 (38%), Positives = 72/130 (56%), Gaps = 1/130 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +I+D+S +VAI+  E   +    A+ ++    + AP ++E   ++    + EI   +D  
Sbjct  1    MIIDSSVLVAILRLEPAYERFVLAITQANRRLLPAPTFLETTMVLAGGRQDEILDRLDSF  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    I+     AD A VA QA+  YG+G  HPA LN GD  +YA A++   PLLF+GDD
Sbjct  61   LHTASIETVPFTADHAAVARQAFLRYGKGR-HPAALNFGDCIAYATARLEAMPLLFKGDD  119

Query  121  FTHTDIRPAC  130
            F  TDI PA 
Sbjct  120  FRLTDIEPAV  129


>gi|338822860|gb|EGP56828.1| PilT domain-containing protein [Agrobacterium tumefaciens F2]
Length=127

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 73/129 (57%), Gaps = 4/129 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA++AI+  E  A     ALE      +SA    E   + QRR+R    R +D L
Sbjct  2    IVIDTSALMAILLDEPTADACTAALETDEPLLISAGTLAEAMIVAQRRNR---VRELDML  58

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            ++   I V  V    A   ++AYR +G+G  HPA LN GD ++Y LA+  G PLL+ G+D
Sbjct  59   IEGLSIDVRHVTPKSAHGVSEAYRIWGKGI-HPAGLNFGDCFAYDLAKTEGCPLLYVGND  117

Query  121  FTHTDIRPA  129
            F+ TDI  A
Sbjct  118  FSQTDIVSA  126


>gi|115526060|ref|YP_782971.1| PilT domain-containing protein [Rhodopseudomonas palustris BisA53]
 gi|115520007|gb|ABJ07991.1| PilT protein domain protein [Rhodopseudomonas palustris BisA53]
Length=133

 Score = 87.0 bits (214),  Expect = 9e-16, Method: Compositional matrix adjust.
 Identities = 48/129 (38%), Positives = 74/129 (58%), Gaps = 3/129 (2%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQ--RRDRP-EISRLV  57
            ++VD+SA++AI   ES A      +       MSA N VE   +++  ++  P +  R +
Sbjct  2    IVVDSSAVIAIFRQESDAAQFARRIADDDQPMMSAANLVETSIVLRGLKQIAPAKAERWL  61

Query  58   DRLLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFR  117
            D  +   GI++E V  DQA+ A  A+  +GRG+GH A LN GD ++Y L++    PLL +
Sbjct  62   DEFIAAAGIRIEPVSPDQAQFARVAHLQFGRGTGHRAALNFGDCFAYGLSKAMDAPLLCK  121

Query  118  GDDFTHTDI  126
            G+DF  TDI
Sbjct  122  GNDFPLTDI  130


>gi|284041784|ref|YP_003392124.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283946005|gb|ADB48749.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=129

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 74/129 (58%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            ++VD+SA+VAI+  E  A  L   L    +  +SA + +E   +M +       R +D L
Sbjct  1    MVVDSSAVVAILLDEEDATELSATLTDVDDPLLSAASLLECSIVMHKNSGVVGLRDLDDL  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L +  I+   VD  QA  A +A+  +G+G+  PA LN GD +SYALA+    PLLF+G D
Sbjct  61   LQETRIRCVPVDLTQALAARRAWVRFGKGN-SPAGLNFGDCFSYALARTMDRPLLFKGGD  119

Query  121  FTHTDIRPA  129
            FT TD+R A
Sbjct  120  FTRTDVRVA  128


>gi|325293169|ref|YP_004279033.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
 gi|325061022|gb|ADY64713.1| PilT domain-containing protein [Agrobacterium sp. H13-3]
Length=127

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 48/126 (39%), Positives = 74/126 (59%), Gaps = 4/126 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA++AI+  E  A     AL+      +SA    E     QRR R   SR ++ L
Sbjct  2    MVIDTSALLAILLDEPTADACAMALDTDEPLLISAGTLAEAVIAAQRRGR---SRELEML  58

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            ++   ++++ V A   R  ++AYR +G+G  HPA LN GD ++Y LA+  G PLL+ G+D
Sbjct  59   IEGLSVEIKPVTAKSIRGISEAYRIWGKGI-HPAGLNFGDCFAYELAKAEGCPLLYVGND  117

Query  121  FTHTDI  126
            F+ TDI
Sbjct  118  FSQTDI  123


>gi|15609119|ref|NP_216498.1| hypothetical protein Rv1982c [Mycobacterium tuberculosis H37Rv]
 gi|31793161|ref|NP_855654.1| hypothetical protein Mb2004c [Mycobacterium bovis AF2122/97]
 gi|148661791|ref|YP_001283314.1| hypothetical protein MRA_1993 [Mycobacterium tuberculosis H37Ra]
 71 more sequence titles
 Length=139

 Score = 85.1 bits (209),  Expect = 3e-15, Method: Compositional matrix adjust.
 Identities = 49/127 (39%), Positives = 72/127 (57%), Gaps = 2/127 (1%)

Query  1    VIVDTSAIVAIVSGE-SGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDR  59
            +IVDTSA+VA+V GE   A ++  AL  + +  MSAP   E   ++  R  P    + +R
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  60   LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD  119
            L  + G+ V +  A+ A    +A+  YG+G  H A LN GD  +YA AQ+  +PLL  G+
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN  119

Query  120  DFTHTDI  126
            DF  TD+
Sbjct  120  DFPQTDL  126


>gi|220919621|ref|YP_002494924.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
 gi|219952041|gb|ACL62432.1| PilT protein domain protein [Methylobacterium nodulans ORS 2060]
Length=128

 Score = 84.7 bits (208),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 51/129 (40%), Positives = 76/129 (59%), Gaps = 1/129 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSAIVAI   E  A   +  +   P   +SA   +E   +++ R        +D  
Sbjct  1    MVIDTSAIVAIALDEPEAAGFERKIADDPVRLISAATVLEAAMVLETRLGEAGGSELDLW  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    +++ AV+ + A  A +A+R YG+G  H A LN GD +SYALA +TGEPLLF+G+D
Sbjct  61   LHKAEVEIVAVEPEHADRARRAWRRYGKGR-HSAGLNFGDCFSYALAALTGEPLLFKGND  119

Query  121  FTHTDIRPA  129
            F+ TD+R A
Sbjct  120  FSQTDVRAA  128


>gi|340626995|ref|YP_004745447.1| hypothetical protein MCAN_20021 [Mycobacterium canettii CIPT 
140010059]
 gi|340005185|emb|CCC44334.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=139

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 49/127 (39%), Positives = 72/127 (57%), Gaps = 2/127 (1%)

Query  1    VIVDTSAIVAIVSGE-SGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDR  59
            +IVDTSA+VA+V GE   A ++  AL  + +  MSAP   E   ++  R  P    + +R
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGADSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  60   LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD  119
            L  + G+ V +  A+ A    +A+  YG+G  H A LN GD  +YA AQ+  +PLL  G+
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN  119

Query  120  DFTHTDI  126
            DF  TD+
Sbjct  120  DFPQTDL  126


>gi|254558657|ref|YP_003065752.1| hypothetical protein METDI0004 [Methylobacterium extorquens DM4]
 gi|254265935|emb|CAX21684.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length=134

 Score = 84.3 bits (207),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 53/132 (41%), Positives = 75/132 (57%), Gaps = 3/132 (2%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISR---LV  57
            + VD SAIVAI++ E  A+ L   LE +P    SA   +E    ++R     I++   LV
Sbjct  1    MFVDASAIVAIIAREPQAETLTARLEEAPVRYTSAVAVLETVMALRRLGAGSIAQAEQLV  60

Query  58   DRLLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFR  117
              LL+   I+   +   ++  A  AY  YG+G GHPA+LNLGD ++YA A+    PLLF 
Sbjct  61   RHLLEHADIEEVPITTRESAAAIAAYARYGKGQGHPAQLNLGDCFAYACARTRNVPLLFV  120

Query  118  GDDFTHTDIRPA  129
            G+DF+ TDI  A
Sbjct  121  GNDFSQTDIAAA  132


>gi|15841458|ref|NP_336495.1| hypothetical protein MT2034 [Mycobacterium tuberculosis CDC1551]
 gi|254232152|ref|ZP_04925479.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364799|ref|ZP_04980845.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|13881698|gb|AAK46309.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601211|gb|EAY60221.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150313|gb|EBA42358.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|323719469|gb|EGB28596.1| toxin protein [Mycobacterium tuberculosis CDC1551A]
Length=139

 Score = 84.3 bits (207),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 49/126 (39%), Positives = 71/126 (57%), Gaps = 2/126 (1%)

Query  1    VIVDTSAIVAIVSGE-SGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDR  59
            +IVDTSA+VA+V GE   A ++  AL  + +  MSAP   E   ++  R  P    + +R
Sbjct  1    MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFER  60

Query  60   LLDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGD  119
            L  + G+ V +  A+ A    +A+  YG+G  H A LN GD  +YA AQ+  +PLL  G+
Sbjct  61   LRSEIGLSVSSFTAEHAAATQRAFLRYGKGR-HRAALNFGDCMTYATAQLGHQPLLAVGN  119

Query  120  DFTHTD  125
            DF  TD
Sbjct  120  DFPQTD  125


>gi|118472447|ref|YP_885674.1| PilT domain-containing protein [Mycobacterium smegmatis str. 
MC2 155]
 gi|118173734|gb|ABK74630.1| PIN domain protein [Mycobacterium smegmatis str. MC2 155]
Length=129

 Score = 84.0 bits (206),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 55/126 (44%), Positives = 81/126 (65%), Gaps = 1/126 (0%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA+VAI++ E  A++L+ A+   P   MS  +Y+E   +++ R      R +D  
Sbjct  1    MVIDTSALVAILTDEPDAELLEGAVADDPVRTMSTASYLETAIVIESRFGEPGGRELDLW  60

Query  61   LDDYGIQVEAVDADQARVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDD  120
            L    + + AVDADQA  A  AYR YG+G  H A LN GD +SYALA+V+G+PLLF+G+ 
Sbjct  61   LHRASVALVAVDADQADAARLAYRRYGKGR-HRAGLNYGDCFSYALAKVSGQPLLFKGEA  119

Query  121  FTHTDI  126
            F  TD+
Sbjct  120  FRLTDV  125


>gi|218295220|ref|ZP_03496056.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
 gi|218244423|gb|EED10948.1| PilT protein domain protein [Thermus aquaticus Y51MC23]
Length=130

 Score = 84.0 bits (206),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 52/128 (41%), Positives = 75/128 (59%), Gaps = 5/128 (3%)

Query  1    VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRL  60
            +++DTSA++AI+  E G + L E + R+   +++AP   E   ++    R    R+   L
Sbjct  1    MVLDTSALLAILFREEGYEDLLEEIRRAHPRKVAAPTLAEAGIVLG--ARLGFERVYLLL  58

Query  61   LDDYGIQVEAVDADQA--RVAAQAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRG  118
                 +Q E +   +A  R A  AYR YGRG  HPA LN GD  SYALA+V GEPLL++G
Sbjct  59   ALLSELQAEVIPFSEAHAREAISAYRRYGRGR-HPAGLNFGDCLSYALAKVEGEPLLYKG  117

Query  119  DDFTHTDI  126
            +DF  TD+
Sbjct  118  EDFDRTDL  125



Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131523520100


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40