BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2762c Length=139 Score E Sequences producing significant alignments: (Bits) Value gi|15609899|ref|NP_217278.1| hypothetical protein Rv2762c [Mycob... 269 1e-70 gi|340627763|ref|YP_004746215.1| hypothetical protein MCAN_27891... 265 1e-69 gi|289762934|ref|ZP_06522312.1| conserved hypothetical protein [... 208 2e-52 gi|31793936|ref|NP_856429.1| hypothetical protein Mb2783c [Mycob... 178 3e-43 gi|342858377|ref|ZP_08715032.1| hypothetical protein MCOL_05866 ... 100 1e-19 gi|118617727|ref|YP_906059.1| hypothetical protein MUL_2180 [Myc... 93.2 1e-17 gi|296171675|ref|ZP_06852889.1| conserved hypothetical protein [... 90.9 5e-17 gi|183981972|ref|YP_001850263.1| hypothetical protein MMAR_1958 ... 90.1 9e-17 gi|254821239|ref|ZP_05226240.1| hypothetical protein MintA_14977... 90.1 1e-16 gi|240171165|ref|ZP_04749824.1| hypothetical protein MkanA1_1777... 89.4 1e-16 gi|31793937|ref|NP_856430.1| hypothetical protein Mb2784c [Mycob... 82.8 2e-14 gi|254776085|ref|ZP_05217601.1| hypothetical protein MaviaA2_156... 80.5 8e-14 gi|41408964|ref|NP_961800.1| hypothetical protein MAP2866c [Myco... 79.0 2e-13 gi|336458980|gb|EGO37934.1| hypothetical protein MAPs_08090 [Myc... 79.0 2e-13 gi|169630170|ref|YP_001703819.1| hypothetical protein MAB_3087c ... 73.6 9e-12 gi|134102352|ref|YP_001108013.1| hypothetical protein SACE_5905 ... 70.9 7e-11 gi|291003685|ref|ZP_06561658.1| hypothetical protein SeryN2_0410... 70.1 9e-11 gi|256379814|ref|YP_003103474.1| hypothetical protein Amir_5817 ... 70.1 1e-10 gi|302528518|ref|ZP_07280860.1| conserved hypothetical protein [... 69.3 2e-10 gi|336118889|ref|YP_004573661.1| hypothetical protein MLP_32440 ... 69.3 2e-10 gi|333991148|ref|YP_004523762.1| hypothetical protein JDM601_250... 69.3 2e-10 gi|120403374|ref|YP_953203.1| hypothetical protein Mvan_2383 [My... 68.2 4e-10 gi|226366138|ref|YP_002783921.1| hypothetical protein ROP_67290 ... 67.8 6e-10 gi|257056520|ref|YP_003134352.1| hypothetical protein Svir_25310... 67.4 7e-10 gi|108799081|ref|YP_639278.1| hypothetical protein Mmcs_2114 [My... 67.0 1e-09 gi|126434687|ref|YP_001070378.1| hypothetical protein Mjls_2101 ... 66.2 2e-09 gi|300788153|ref|YP_003768444.1| hypothetical protein AMED_6308 ... 65.1 3e-09 gi|111023700|ref|YP_706672.1| hypothetical protein RHA1_ro06742 ... 64.3 6e-09 gi|311743638|ref|ZP_07717444.1| conserved hypothetical protein [... 63.2 1e-08 gi|54025841|ref|YP_120083.1| hypothetical protein nfa38710 [Noca... 62.4 2e-08 gi|284992333|ref|YP_003410887.1| hypothetical protein Gobs_3948 ... 62.4 2e-08 gi|325001107|ref|ZP_08122219.1| hypothetical protein PseP1_20197... 62.4 2e-08 gi|284042950|ref|YP_003393290.1| hypothetical protein Cwoe_1487 ... 61.2 5e-08 gi|119960544|ref|YP_948407.1| hypothetical protein AAur_2692 [Ar... 60.8 6e-08 gi|315444916|ref|YP_004077795.1| hypothetical protein Mspyr1_334... 60.1 1e-07 gi|331698419|ref|YP_004334658.1| hypothetical protein Psed_4657 ... 59.3 2e-07 gi|288962351|ref|YP_003452646.1| hypothetical protein AZL_d02760... 59.3 2e-07 gi|145224585|ref|YP_001135263.1| hypothetical protein Mflv_4005 ... 58.9 3e-07 gi|326334188|ref|ZP_08200411.1| hypothetical protein NBCG_05617 ... 58.5 3e-07 gi|162457258|ref|YP_001619625.1| hypothetical protein sce8973 [S... 58.5 3e-07 gi|325963929|ref|YP_004241835.1| hypothetical protein Asphe3_257... 57.8 5e-07 gi|291299738|ref|YP_003511016.1| hypothetical protein Snas_2233 ... 56.6 1e-06 gi|197103999|ref|YP_002129376.1| hypothetical protein PHZ_c0533 ... 56.2 1e-06 gi|326384518|ref|ZP_08206198.1| hypothetical protein SCNU_16339 ... 55.5 2e-06 gi|262202111|ref|YP_003273319.1| hypothetical protein Gbro_2178 ... 55.1 4e-06 gi|269957290|ref|YP_003327079.1| hypothetical protein Xcel_2506 ... 54.3 6e-06 gi|343927026|ref|ZP_08766514.1| hypothetical protein GOALK_077_0... 53.5 9e-06 gi|118472563|ref|YP_887014.1| hypothetical protein MSMEG_2679 [M... 53.5 1e-05 gi|167646707|ref|YP_001684370.1| hypothetical protein Caul_2745 ... 52.8 2e-05 gi|145593934|ref|YP_001158231.1| hypothetical protein Strop_1386... 52.8 2e-05 >gi|15609899|ref|NP_217278.1| hypothetical protein Rv2762c [Mycobacterium tuberculosis H37Rv] gi|15842300|ref|NP_337337.1| hypothetical protein MT2832 [Mycobacterium tuberculosis CDC1551] gi|148662604|ref|YP_001284127.1| hypothetical protein MRA_2787 [Mycobacterium tuberculosis H37Ra] 67 more sequence titles Length=139 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAKRRHLYYV 60 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAKRRHLYYV Sbjct 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAKRRHLYYV 60 Query 61 RPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMASWLGLGGIAV 120 RPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMASWLGLGGIAV Sbjct 61 RPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMASWLGLGGIAV 120 Query 121 STRGDLAGELCAATKRTNG 139 STRGDLAGELCAATKRTNG Sbjct 121 STRGDLAGELCAATKRTNG 139 >gi|340627763|ref|YP_004746215.1| hypothetical protein MCAN_27891 [Mycobacterium canettii CIPT 140010059] gi|340005953|emb|CCC45120.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=139 Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/139 (99%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAKRRHLYYV 60 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRK LISRIQVRQLDSAAVAAKRRHLYYV Sbjct 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKWLISRIQVRQLDSAAVAAKRRHLYYV 60 Query 61 RPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMASWLGLGGIAV 120 RPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMASWLGLGGIAV Sbjct 61 RPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMASWLGLGGIAV 120 Query 121 STRGDLAGELCAATKRTNG 139 STRGDLAGELCAATKRTNG Sbjct 121 STRGDLAGELCAATKRTNG 139 >gi|289762934|ref|ZP_06522312.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289710440|gb|EFD74456.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=121 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/107 (99%), Positives = 106/107 (99%), Gaps = 0/107 (0%) Query 33 RKRLISRIQVRQLDSAAVAAKRRHLYYVRPLDGHPVARVDRKTDRAADSLPVAGVLGELD 92 RKRLISRIQVRQLDSAAVAAKRRHLYYVRPLDGHPVARVDRKTDRA DSLPVAGVLGELD Sbjct 15 RKRLISRIQVRQLDSAAVAAKRRHLYYVRPLDGHPVARVDRKTDRAGDSLPVAGVLGELD 74 Query 93 IPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGELCAATKRTNG 139 IPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGELCAATKRTNG Sbjct 75 IPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGELCAATKRTNG 121 >gi|31793936|ref|NP_856429.1| hypothetical protein Mb2783c [Mycobacterium bovis AF2122/97] gi|121638640|ref|YP_978864.1| hypothetical protein BCG_2778c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991132|ref|YP_002645821.1| hypothetical protein JTY_2772 [Mycobacterium bovis BCG str. Tokyo 172] gi|31619530|emb|CAD94968.1| CONSERVED HYPOTHETICAL PROTEIN [SECOND PART] [Mycobacterium bovis AF2122/97] gi|121494288|emb|CAL72766.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774247|dbj|BAH27053.1| hypothetical protein JTY_2772 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602678|emb|CCC65354.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=90 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 89/90 (99%), Positives = 90/90 (100%), Gaps = 0/90 (0%) Query 50 VAAKRRHLYYVRPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASM 109 +AAKRRHLYYVRPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASM Sbjct 1 MAAKRRHLYYVRPLDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASM 60 Query 110 ASWLGLGGIAVSTRGDLAGELCAATKRTNG 139 ASWLGLGGIAVSTRGDLAGELCAATKRTNG Sbjct 61 ASWLGLGGIAVSTRGDLAGELCAATKRTNG 90 >gi|342858377|ref|ZP_08715032.1| hypothetical protein MCOL_05866 [Mycobacterium colombiense CECT 3035] gi|342134081|gb|EGT87261.1| hypothetical protein MCOL_05866 [Mycobacterium colombiense CECT 3035] Length=363 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/90 (65%), Positives = 65/90 (73%), Gaps = 2/90 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKR++ YYV PL DG VARVD K DRAADSL V G GE D+P VA LAGEL S Sbjct 274 AAKRQYGYYVWPLLMDGRLVARVDLKADRAADSLRVLGAFGEPDVPRARVAAALAGELES 333 Query 109 MASWLGLGGIAVSTRGDLAGELCAATKRTN 138 MASWLGLGG +V+ GDL+GEL AA KR + Sbjct 334 MASWLGLGGFSVAGPGDLSGELRAAAKRVS 363 >gi|118617727|ref|YP_906059.1| hypothetical protein MUL_2180 [Mycobacterium ulcerans Agy99] gi|118569837|gb|ABL04588.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=404 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/96 (56%), Positives = 65/96 (68%), Gaps = 2/96 (2%) Query 44 QLDSAAVAAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +++ +AA+R++ YYVRPL DG V RVD K DR+ D+L V G E D VA Sbjct 308 RIEIYTLAAQRQYGYYVRPLLLDGQLVGRVDLKADRSTDTLLVVGAFAEPDASGPRVAAA 367 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGELCAATKRT 137 LAGELASMA WLGL G++VS RGDLAGEL A +RT Sbjct 368 LAGELASMAPWLGLSGVSVSGRGDLAGELAIAVRRT 403 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/39 (57%), Positives = 26/39 (67%), Gaps = 0/39 (0%) Query 18 GVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAKRRH 56 G AEP AG I A +RLISRIQV QLDS +VA + + Sbjct 18 GFAEPKPAGRINKAHLRRLISRIQVLQLDSVSVAVRAHY 56 >gi|296171675|ref|ZP_06852889.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894036|gb|EFG73799.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=415 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/86 (61%), Positives = 60/86 (70%), Gaps = 2/86 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 A KR++ YYV PL DG VARVD K DRA D+L V G GE D+P V E LAGEL S Sbjct 330 ADKRQYGYYVWPLLMDGRLVARVDLKADRAGDTLRVVGAFGEPDVPRPRVIEALAGELRS 389 Query 109 MASWLGLGGIAVSTRGDLAGELCAAT 134 MASWL LGG +V+TRGDLA +L A + Sbjct 390 MASWLELGGFSVATRGDLAADLRAVS 415 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/53 (59%), Positives = 35/53 (67%), Gaps = 3/53 (5%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 +SAA A RR AV G +EP AGPI A KRLISRIQV QLDS +VA + Sbjct 19 LSAAQA---RRIAVAAQGFSEPRPAGPITRAHLKRLISRIQVLQLDSVSVAVR 68 >gi|183981972|ref|YP_001850263.1| hypothetical protein MMAR_1958 [Mycobacterium marinum M] gi|183175298|gb|ACC40408.1| conserved hypothetical protein [Mycobacterium marinum M] Length=404 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 53/89 (60%), Positives = 60/89 (68%), Gaps = 2/89 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AA+R++ YYV PL DG V RVD K DR+ D+L V G E D VA LAGELAS Sbjct 315 AAQRQYGYYVWPLLLDGQLVGRVDLKADRSTDTLLVVGAFAEPDASGPRVAAALAGELAS 374 Query 109 MASWLGLGGIAVSTRGDLAGELCAATKRT 137 MA WLGL GI+VS RGDLAGEL A +RT Sbjct 375 MAPWLGLSGISVSGRGDLAGELAIAVRRT 403 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/39 (57%), Positives = 26/39 (67%), Gaps = 0/39 (0%) Query 18 GVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAKRRH 56 G AEP AG I A +RLISRIQV QLDS +VA + + Sbjct 18 GFAEPKPAGRINKAHLRRLISRIQVLQLDSVSVAVRAHY 56 >gi|254821239|ref|ZP_05226240.1| hypothetical protein MintA_14977 [Mycobacterium intracellulare ATCC 13950] Length=403 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/84 (64%), Positives = 57/84 (68%), Gaps = 2/84 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKR++ YYV PL DG VARVD K DR AD L V G E D P VA LAGEL S Sbjct 318 AAKRQYGYYVWPLLMDGRLVARVDLKADRPADRLRVVGAFAEPDTPKARVAAALAGELRS 377 Query 109 MASWLGLGGIAVSTRGDLAGELCA 132 MASWLGLGG +VS RGDLA +L A Sbjct 378 MASWLGLGGFSVSGRGDLAADLRA 401 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/53 (55%), Positives = 32/53 (61%), Gaps = 3/53 (5%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 +SAA A RR AV G EP G I A KRLISRIQV QLDS +VA + Sbjct 6 LSAAQA---RRIAVAAQGFTEPRPGGEITRAHLKRLISRIQVLQLDSVSVAVR 55 >gi|240171165|ref|ZP_04749824.1| hypothetical protein MkanA1_17771 [Mycobacterium kansasii ATCC 12478] Length=406 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/90 (62%), Positives = 61/90 (68%), Gaps = 4/90 (4%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVT--VAEGLAGEL 106 A KR++ YYV PL DG VARVD K DRAAD+L V G E D P VA LAGEL Sbjct 315 APKRQYGYYVWPLLLDGQLVARVDLKADRAADALRVVGAFSEPDSPRTRTRVATALAGEL 374 Query 107 ASMASWLGLGGIAVSTRGDLAGELCAATKR 136 ASMASWLGL G+ VS RGDLAG+L A K+ Sbjct 375 ASMASWLGLAGVGVSGRGDLAGQLRTAAKQ 404 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/36 (67%), Positives = 26/36 (73%), Gaps = 0/36 (0%) Query 18 GVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 G AEP AGPI A KRLISRIQV QLDS +VA + Sbjct 18 GFAEPKPAGPITHAHLKRLISRIQVLQLDSVSVAVR 53 >gi|31793937|ref|NP_856430.1| hypothetical protein Mb2784c [Mycobacterium bovis AF2122/97] gi|121638641|ref|YP_978865.1| hypothetical protein BCG_2779c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991133|ref|YP_002645822.1| hypothetical protein JTY_2773 [Mycobacterium bovis BCG str. Tokyo 172] gi|31619531|emb|CAD94969.1| CONSERVED HYPOTHETICAL PROTEIN [FIRST PART] [Mycobacterium bovis AF2122/97] gi|121494289|emb|CAL72767.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774248|dbj|BAH27054.1| hypothetical protein JTY_2773 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602679|emb|CCC65355.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=43 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/43 (100%), Positives = 43/43 (100%), Gaps = 0/43 (0%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVR 43 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVR Sbjct 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVR 43 >gi|254776085|ref|ZP_05217601.1| hypothetical protein MaviaA2_15635 [Mycobacterium avium subsp. avium ATCC 25291] Length=412 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/84 (60%), Positives = 55/84 (66%), Gaps = 2/84 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKRR+ YYV PL DG ARVD K DRA +L V G E P VA LAGEL S Sbjct 327 AAKRRYGYYVWPLLMDGRLAARVDLKADRAEGTLRVLGAFAEPQAPRPRVAAALAGELWS 386 Query 109 MASWLGLGGIAVSTRGDLAGELCA 132 MASWLGLGG++V+ RGDLA L A Sbjct 387 MASWLGLGGLSVADRGDLAPALRA 410 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 26/44 (60%), Gaps = 0/44 (0%) Query 10 RRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 RR AV G EP AG + A RLIS+IQV QLDS +V + Sbjct 22 RRIAVAAQGFTEPRPAGAVTRAHLNRLISKIQVLQLDSVSVTVR 65 >gi|41408964|ref|NP_961800.1| hypothetical protein MAP2866c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397323|gb|AAS05183.1| hypothetical protein MAP_2866c [Mycobacterium avium subsp. paratuberculosis K-10] Length=412 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/84 (60%), Positives = 55/84 (66%), Gaps = 2/84 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKRR+ YYV PL DG ARVD K DRA +L V G E P VA LAGEL S Sbjct 327 AAKRRYGYYVWPLLMDGRLAARVDLKADRAEGTLRVLGAFAEPQAPRPRVAAVLAGELWS 386 Query 109 MASWLGLGGIAVSTRGDLAGELCA 132 MASWLGLGG++V+ RGDLA L A Sbjct 387 MASWLGLGGLSVADRGDLALALRA 410 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 26/44 (60%), Gaps = 0/44 (0%) Query 10 RRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 RR AV G EP AG + A RLIS+IQV QLDS +V + Sbjct 22 RRIAVAAQGFTEPRPAGAVTRAHLNRLISKIQVLQLDSVSVTVR 65 >gi|336458980|gb|EGO37934.1| hypothetical protein MAPs_08090 [Mycobacterium avium subsp. paratuberculosis S397] Length=412 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/84 (60%), Positives = 55/84 (66%), Gaps = 2/84 (2%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKRR+ YYV PL DG ARVD K DRA +L V G E P VA LAGEL S Sbjct 327 AAKRRYGYYVWPLLMDGRLAARVDLKADRAEGTLRVLGAFAEPQAPRPRVAAVLAGELWS 386 Query 109 MASWLGLGGIAVSTRGDLAGELCA 132 MASWLGLGG++V+ RGDLA L A Sbjct 387 MASWLGLGGLSVADRGDLALALRA 410 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 26/44 (60%), Gaps = 0/44 (0%) Query 10 RRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 RR AV G EP AG + A RLIS+IQV QLDS +V + Sbjct 22 RRIAVAAQGFTEPRPAGAVTRAHLNRLISKIQVLQLDSVSVTVR 65 >gi|169630170|ref|YP_001703819.1| hypothetical protein MAB_3087c [Mycobacterium abscessus ATCC 19977] gi|169242137|emb|CAM63165.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=407 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 47/89 (53%), Positives = 54/89 (61%), Gaps = 2/89 (2%) Query 51 AAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKR++ YYV P LDG V RVD K DRAA +L V G E PV +A LA +L S Sbjct 318 AAKRQYGYYVWPFLLDGQLVGRVDLKADRAAGTLNVVGAFAEEGRDPVGIAGPLAEQLVS 377 Query 109 MASWLGLGGIAVSTRGDLAGELCAATKRT 137 MASWLGL +AV RGDL L A + T Sbjct 378 MASWLGLERVAVGERGDLVRPLGAVLRTT 406 >gi|134102352|ref|YP_001108013.1| hypothetical protein SACE_5905 [Saccharopolyspora erythraea NRRL 2338] gi|133914975|emb|CAM05088.1| protein of unknown function DUF1006 [Saccharopolyspora erythraea NRRL 2338] Length=418 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/85 (53%), Positives = 50/85 (59%), Gaps = 2/85 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR++ YYV P LDG VARVD K DR A L V G E +V LAG L MA Sbjct 331 KRQYGYYVFPFLLDGRLVARVDLKADRTAGVLRVPGAFAEPGADLASVVPELAGALGDMA 390 Query 111 SWLGLGGIAVSTRGDLAGELCAATK 135 SWLGLGG+AV RGDLA L T+ Sbjct 391 SWLGLGGVAVGERGDLATALRTTTR 415 >gi|291003685|ref|ZP_06561658.1| hypothetical protein SeryN2_04107 [Saccharopolyspora erythraea NRRL 2338] Length=393 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/85 (53%), Positives = 50/85 (59%), Gaps = 2/85 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR++ YYV P LDG VARVD K DR A L V G E +V LAG L MA Sbjct 306 KRQYGYYVFPFLLDGRLVARVDLKADRTAGVLRVPGAFAEPGADLASVVPELAGALGDMA 365 Query 111 SWLGLGGIAVSTRGDLAGELCAATK 135 SWLGLGG+AV RGDLA L T+ Sbjct 366 SWLGLGGVAVGERGDLATALRTTTR 390 >gi|256379814|ref|YP_003103474.1| hypothetical protein Amir_5817 [Actinosynnema mirum DSM 43827] gi|255924117|gb|ACU39628.1| protein of unknown function DUF1006 [Actinosynnema mirum DSM 43827] Length=406 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/81 (57%), Positives = 49/81 (61%), Gaps = 2/81 (2%) Query 52 AKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASM 109 AKR H YYV P LDG VARVD K DRAA +L V G E + VA LA EL M Sbjct 320 AKRVHGYYVFPFLLDGRLVARVDLKADRAAGALLVQGAYAEPGVERGRVAVELAAELRCM 379 Query 110 ASWLGLGGIAVSTRGDLAGEL 130 A WLGL G+ V RGDLA EL Sbjct 380 AGWLGLSGVRVMGRGDLAAEL 400 >gi|302528518|ref|ZP_07280860.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437413|gb|EFL09229.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=404 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/86 (55%), Positives = 50/86 (59%), Gaps = 2/86 (2%) Query 52 AKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASM 109 AKR H YYV P LDG ARVD K+DRAA L V G E VA LAGEL +M Sbjct 319 AKRVHGYYVFPFLLDGALSARVDLKSDRAAGVLRVQGAFAEPGADQARVAAELAGELRTM 378 Query 110 ASWLGLGGIAVSTRGDLAGELCAATK 135 A W GL G+AV RGDLA L A K Sbjct 379 AEWQGLDGVAVGERGDLARALRRAVK 404 >gi|336118889|ref|YP_004573661.1| hypothetical protein MLP_32440 [Microlunatus phosphovorus NM-1] gi|334686673|dbj|BAK36258.1| hypothetical protein MLP_32440 [Microlunatus phosphovorus NM-1] Length=411 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/107 (46%), Positives = 56/107 (53%), Gaps = 3/107 (2%) Query 32 DRKRLISRIQVRQLDSAAVAAKRR-HLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVL 88 +R+RL R V A+RR H YYV P LD VARVD K DRA+ L V Sbjct 292 ERQRLERLFHFRYRIEIYVPAERRVHGYYVYPFLLDEAMVARVDLKADRASGVLRVNSAW 351 Query 89 GELDIPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGELCAATK 135 E P V+E LAGEL MA WLGL + VS GDL L AA + Sbjct 352 LEEGADPAEVSEALAGELTVMAGWLGLNDVVVSPCGDLGPRLAAAQQ 398 >gi|333991148|ref|YP_004523762.1| hypothetical protein JDM601_2508 [Mycobacterium sp. JDM601] gi|333487116|gb|AEF36508.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=409 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/89 (49%), Positives = 52/89 (59%), Gaps = 2/89 (2%) Query 44 QLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +L+ AA+RR+ YYV P LDG V RVD K DR A +L V G E VA+ Sbjct 314 RLEIYTPAAQRRYGYYVWPFLLDGQLVGRVDLKADRRAGALHVVGAFAEAGHARQRVAQA 373 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGEL 130 L EL +MA WLGL ++V RGDLA EL Sbjct 374 LLPELETMARWLGLSQVSVGERGDLAAEL 402 Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/53 (50%), Positives = 30/53 (57%), Gaps = 0/53 (0%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 M++ T A RR AV G A I A KRLISRIQV QLDS +VA + Sbjct 1 MASLTPAQARRIAVAAQGFAVAKPRAAITRAHLKRLISRIQVLQLDSVSVAVR 53 >gi|120403374|ref|YP_953203.1| hypothetical protein Mvan_2383 [Mycobacterium vanbaalenii PYR-1] gi|119956192|gb|ABM13197.1| protein of unknown function DUF1006 [Mycobacterium vanbaalenii PYR-1] Length=411 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/99 (48%), Positives = 53/99 (54%), Gaps = 3/99 (3%) Query 34 KRLISRIQVRQLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGEL 91 +RL R ++ AAKRR YYV P LDG V RVD K DR + +L V G E Sbjct 308 ERLFGGFHYR-IEIYTPAAKRRFGYYVWPFLLDGDLVGRVDLKADRVSGTLQVLGAFTED 366 Query 92 DIPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGEL 130 VA LA EL SMA WLGL + V RGDLA EL Sbjct 367 GRDRARVARALATELQSMAGWLGLADVTVGHRGDLATEL 405 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/49 (56%), Positives = 32/49 (66%), Gaps = 0/49 (0%) Query 5 TAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 TAA RR AV G EP AGP+ A KRLI+R+QV QLDS +VA + Sbjct 11 TAAQARRIAVGAQGFHEPKPAGPVTRAHLKRLIARLQVLQLDSVSVAVR 59 >gi|226366138|ref|YP_002783921.1| hypothetical protein ROP_67290 [Rhodococcus opacus B4] gi|226244628|dbj|BAH54976.1| hypothetical protein [Rhodococcus opacus B4] Length=410 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/98 (45%), Positives = 52/98 (54%), Gaps = 2/98 (2%) Query 44 QLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +L+ A KR H YYV P L+G VARVD K DRA+ +L V E D P V E Sbjct 312 RLEIYTPAHKRVHGYYVFPFLLNGELVARVDLKADRASGTLEVRSAFVEPDRSPGHVVEA 371 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGELCAATKRTNG 139 L EL MA+WLGL + V RG+L L A R G Sbjct 372 LVPELRRMATWLGLDDVRVDDRGNLGALLAAEASRPRG 409 >gi|257056520|ref|YP_003134352.1| hypothetical protein Svir_25310 [Saccharomonospora viridis DSM 43017] gi|256586392|gb|ACU97525.1| uncharacterized conserved protein [Saccharomonospora viridis DSM 43017] Length=402 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/81 (51%), Positives = 45/81 (56%), Gaps = 2/81 (2%) Query 52 AKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASM 109 A+R H YYV P LDG VARVD K DR L V G E + VA LA EL M Sbjct 318 AERVHGYYVFPFLLDGELVARVDLKADRVNRRLRVPGAFAEPGVDRARVATELANELEHM 377 Query 110 ASWLGLGGIAVSTRGDLAGEL 130 ASWLGL G+ V RGD +L Sbjct 378 ASWLGLDGVEVGERGDFVADL 398 >gi|108799081|ref|YP_639278.1| hypothetical protein Mmcs_2114 [Mycobacterium sp. MCS] gi|119868196|ref|YP_938148.1| hypothetical protein Mkms_2160 [Mycobacterium sp. KMS] gi|108769500|gb|ABG08222.1| protein of unknown function DUF1006 [Mycobacterium sp. MCS] gi|119694285|gb|ABL91358.1| protein of unknown function DUF1006 [Mycobacterium sp. KMS] Length=404 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 46/80 (58%), Gaps = 2/80 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR++ YYV P LDG V RVD K +R D+L V G E P VA LAGEL +MA Sbjct 318 KRQYGYYVWPFLLDGRLVGRVDLKAERTRDALHVVGAFVEPGEDPARVAVALAGELKTMA 377 Query 111 SWLGLGGIAVSTRGDLAGEL 130 WLGL + V RGDL L Sbjct 378 QWLGLADVTVGDRGDLVATL 397 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/49 (49%), Positives = 29/49 (60%), Gaps = 0/49 (0%) Query 5 TAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 T A RR AV G AEP GP+ +RL+ RIQV QLDS +VA + Sbjct 4 TGAQARRIAVAAQGFAEPKPRGPVTRGHLRRLVDRIQVLQLDSVSVAVR 52 >gi|126434687|ref|YP_001070378.1| hypothetical protein Mjls_2101 [Mycobacterium sp. JLS] gi|126234487|gb|ABN97887.1| protein of unknown function DUF1006 [Mycobacterium sp. JLS] Length=404 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 46/80 (58%), Gaps = 2/80 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR++ YYV P LDG V RVD K +R D+L V G E P VA LAGEL +MA Sbjct 318 KRQYGYYVWPFLLDGRLVGRVDLKAERTRDALHVVGAFVEPGEDPARVAVALAGELKTMA 377 Query 111 SWLGLGGIAVSTRGDLAGEL 130 WLGL + V RGDL L Sbjct 378 QWLGLAVVTVGDRGDLVATL 397 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/49 (52%), Positives = 30/49 (62%), Gaps = 0/49 (0%) Query 5 TAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 T A RR AV G AEP GP+ A +RL+ RIQV QLDS +VA + Sbjct 4 TGAQARRIAVAAQGFAEPKPRGPVTRAHLRRLVDRIQVLQLDSVSVAVR 52 >gi|300788153|ref|YP_003768444.1| hypothetical protein AMED_6308 [Amycolatopsis mediterranei U32] gi|299797667|gb|ADJ48042.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340529738|gb|AEK44943.1| hypothetical protein RAM_32350 [Amycolatopsis mediterranei S699] Length=404 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/85 (50%), Positives = 47/85 (56%), Gaps = 2/85 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR + YYV P LDG VARVD K+DRAA L V G E + V LA EL MA Sbjct 320 KRVYGYYVFPFLLDGSLVARVDLKSDRAAGVLRVQGAFAEEGVDVARVLPELAAELRHMA 379 Query 111 SWLGLGGIAVSTRGDLAGELCAATK 135 WLGL G+ V RGDLA L + Sbjct 380 EWLGLSGVTVGARGDLAVPLAKLVR 404 >gi|111023700|ref|YP_706672.1| hypothetical protein RHA1_ro06742 [Rhodococcus jostii RHA1] gi|110823230|gb|ABG98514.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=410 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/98 (47%), Positives = 53/98 (55%), Gaps = 2/98 (2%) Query 44 QLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +L+ A KR H YYV P L+G VARVD K DRA+ +L V E D P V E Sbjct 312 RLEIYTPAHKRVHGYYVYPFLLNGELVARVDLKADRASGTLAVRSAFVEPDRNPGRVVEA 371 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGELCAATKRTNG 139 L EL MA+WLGL I V RG+L L AA R G Sbjct 372 LLPELRRMATWLGLDDIRVDDRGNLGALLAAAAARPRG 409 >gi|311743638|ref|ZP_07717444.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312768|gb|EFQ82679.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length=410 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/86 (53%), Positives = 48/86 (56%), Gaps = 3/86 (3%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 +R H YYV P L VARVD DRAA L V G GE PP T AE LA EL MA Sbjct 319 RRVHGYYVLPFLLGDRLVARVDLAADRAAGVLRVHGAFGEPSAPPHTAAE-LAAELWLMA 377 Query 111 SWLGLGGIAVSTRGDLAGELCAATKR 136 WLGL +AV+ GDLA L A R Sbjct 378 GWLGLEDVAVADHGDLATALAAEVPR 403 >gi|54025841|ref|YP_120083.1| hypothetical protein nfa38710 [Nocardia farcinica IFM 10152] gi|54017349|dbj|BAD58719.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=419 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/89 (47%), Positives = 48/89 (54%), Gaps = 2/89 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 +R + YYV P LD V RVD + +RAA L V G E PV VA LAG L MA Sbjct 320 QRVYGYYVFPFLLDDQLVGRVDLRAERAAGRLLVPGAFVEPGHDPVRVAAALAGSLREMA 379 Query 111 SWLGLGGIAVSTRGDLAGELCAATKRTNG 139 WL L + + RGDLA EL AA +G Sbjct 380 DWLELDDVVIGERGDLAAELAAAQPSRSG 408 >gi|284992333|ref|YP_003410887.1| hypothetical protein Gobs_3948 [Geodermatophilus obscurus DSM 43160] gi|284065578|gb|ADB76516.1| protein of unknown function DUF1006 [Geodermatophilus obscurus DSM 43160] Length=403 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/91 (46%), Positives = 48/91 (53%), Gaps = 2/91 (2%) Query 44 QLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +L+ AA+R H YYV P LD VARVD K DR A L + E + V Sbjct 310 RLEIYTPAAQRVHGYYVLPFLLDDRLVARVDLKADRHAGVLRIQSAFAEEGVDRAQVTAA 369 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGELCA 132 LA ELA MA W+ LG + RGDLA EL A Sbjct 370 LAEELALMAGWMQLGAVVAGERGDLAAELAA 400 >gi|325001107|ref|ZP_08122219.1| hypothetical protein PseP1_20197 [Pseudonocardia sp. P1] Length=453 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/111 (43%), Positives = 59/111 (54%), Gaps = 5/111 (4%) Query 32 DRKRLISRIQVRQLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLG 89 DR I + R ++ +R + YYV P LDG V RVD K DRAA L V G Sbjct 342 DRTERIFGFRYR-IEIYVPEPQREYGYYVFPFLLDGRLVGRVDLKADRAAGVLRVPGAFA 400 Query 90 ELDIP-PVT-VAEGLAGELASMASWLGLGGIAVSTRGDLAGELCAATKRTN 138 E P P + +A LA EL +MA WLGL G+ V RG LA L A +R++ Sbjct 401 EPGAPGPESRIAAELAAELTTMAGWLGLDGVVVGERGGLAALLHAELRRSD 451 >gi|284042950|ref|YP_003393290.1| hypothetical protein Cwoe_1487 [Conexibacter woesei DSM 14684] gi|283947171|gb|ADB49915.1| protein of unknown function DUF1006 [Conexibacter woesei DSM 14684] Length=415 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/90 (52%), Positives = 52/90 (58%), Gaps = 5/90 (5%) Query 51 AAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDI--PPVTVAEGLAGEL 106 A KR H YYV P L VARVD K+DR A L V G E D+ P VA LA EL Sbjct 325 AEKRVHGYYVLPFLLGEELVARVDLKSDRQAGVLRVQGAYAEPDVAAEPARVAAELAAEL 384 Query 107 ASMASWLGLG-GIAVSTRGDLAGELCAATK 135 S+A WLGL G+ V+ RGDLA L AA + Sbjct 385 RSVAGWLGLERGVEVAGRGDLAPALSAALR 414 >gi|119960544|ref|YP_948407.1| hypothetical protein AAur_2692 [Arthrobacter aurescens TC1] gi|119947403|gb|ABM06314.1| putative protein of unknown function (DUF1006) [Arthrobacter aurescens TC1] Length=429 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/88 (50%), Positives = 47/88 (54%), Gaps = 3/88 (3%) Query 51 AAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKRR YYV P L VARVD K DRA L V E+ P T E LA EL Sbjct 314 AAKRRFGYYVLPFLLREAIVARVDLKADRATGQLLVRAAFAEMTAPADTAVE-LAAELRL 372 Query 109 MASWLGLGGIAVSTRGDLAGELCAATKR 136 MA+WLGL + V GDLAG L A R Sbjct 373 MATWLGLQEVVVWPVGDLAGALSEAVAR 400 >gi|315444916|ref|YP_004077795.1| hypothetical protein Mspyr1_33490 [Mycobacterium sp. Spyr1] gi|315263219|gb|ADT99960.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1] Length=408 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/83 (50%), Positives = 46/83 (56%), Gaps = 2/83 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KRR+ YYV P LDG V RVD K DR A +L V G E VA LA L MA Sbjct 323 KRRYGYYVWPFLLDGDLVGRVDLKADRTAGTLQVLGAYCEDGHDGPRVATELATALRQMA 382 Query 111 SWLGLGGIAVSTRGDLAGELCAA 133 WLGL + V+ RGDL+ L AA Sbjct 383 DWLGLDDVVVAERGDLSAHLRAA 405 Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust. Identities = 19/36 (53%), Positives = 25/36 (70%), Gaps = 0/36 (0%) Query 18 GVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 G EP +GP+ A KRLI+R+QV QLDS +VA + Sbjct 17 GFHEPRPSGPVTRAHLKRLIARLQVLQLDSVSVAVR 52 >gi|331698419|ref|YP_004334658.1| hypothetical protein Psed_4657 [Pseudonocardia dioxanivorans CB1190] gi|326953108|gb|AEA26805.1| protein of unknown function DUF1006 [Pseudonocardia dioxanivorans CB1190] Length=408 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/80 (49%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR YYV P LDG VARVD K++R +L V G E + V VA LA EL MA Sbjct 322 KREFGYYVFPFLLDGRLVARVDLKSERTTGTLRVKGAFVEEGVDEVRVAAELAAELRVMA 381 Query 111 SWLGLGGIAVSTRGDLAGEL 130 WLGL + V RG LA L Sbjct 382 EWLGLDAVEVGDRGGLATRL 401 >gi|288962351|ref|YP_003452646.1| hypothetical protein AZL_d02760 [Azospirillum sp. B510] gi|288914617|dbj|BAI76102.1| hypothetical protein AZL_d02760 [Azospirillum sp. B510] Length=420 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/91 (46%), Positives = 48/91 (53%), Gaps = 2/91 (2%) Query 44 QLDSAAVAAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +L+ A KR H YYV P +D ARVD K+DR A +L V GE P TVA Sbjct 315 RLEIYTPAHKREHGYYVLPFLMDERIAARVDLKSDRKASALLVQAAHGEAHSRPETVAPA 374 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGELCA 132 LA EL +A WL L I V GDLA L + Sbjct 375 LAAELRRLAGWLALERIVVKGGGDLAPALTS 405 >gi|145224585|ref|YP_001135263.1| hypothetical protein Mflv_4005 [Mycobacterium gilvum PYR-GCK] gi|145217071|gb|ABP46475.1| protein of unknown function DUF1006 [Mycobacterium gilvum PYR-GCK] Length=408 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/83 (50%), Positives = 46/83 (56%), Gaps = 2/83 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KRR+ YYV P LDG V RVD K DR A +L V G E VA LA L MA Sbjct 323 KRRYGYYVWPFLLDGDLVGRVDLKADRTAGALQVLGAYCEGGRDGPRVAAELATALRQMA 382 Query 111 SWLGLGGIAVSTRGDLAGELCAA 133 WLGL + V+ RGDL+ L AA Sbjct 383 DWLGLDDVVVAERGDLSAHLRAA 405 Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/36 (53%), Positives = 25/36 (70%), Gaps = 0/36 (0%) Query 18 GVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 G EP +GP+ A KRLI+R+QV QLDS +VA + Sbjct 17 GFHEPRPSGPVTRAHLKRLIARLQVLQLDSVSVAVR 52 >gi|326334188|ref|ZP_08200411.1| hypothetical protein NBCG_05617 [Nocardioidaceae bacterium Broad-1] gi|325947979|gb|EGD40096.1| hypothetical protein NBCG_05617 [Nocardioidaceae bacterium Broad-1] Length=403 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/79 (51%), Positives = 43/79 (55%), Gaps = 3/79 (3%) Query 51 AAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 A KR H YYV P L H V RVD K DR + L V G E P T E LA EL Sbjct 319 APKRIHGYYVLPFLLGEHIVGRVDLKADRKSGILQVKGAFTEPHAPVETAVE-LAAELER 377 Query 109 MASWLGLGGIAVSTRGDLA 127 +A WLGL IAV +GDLA Sbjct 378 LAGWLGLEAIAVDPKGDLA 396 >gi|162457258|ref|YP_001619625.1| hypothetical protein sce8973 [Sorangium cellulosum 'So ce 56'] gi|161167840|emb|CAN99145.1| hypothetical protein sce8973 [Sorangium cellulosum 'So ce 56'] Length=402 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/92 (48%), Positives = 51/92 (56%), Gaps = 3/92 (3%) Query 44 QLDSAAVAAKRRHLYYVRP-LDGHPV-ARVDRKTDRAADSLPVAGVLGELDIPPVTVAEG 101 +L+ AAKR H YYV P L+G + ARVD K DR A L V GE E Sbjct 308 RLEIYTPAAKRTHGYYVLPFLEGDAITARVDLKADRKAGVLIVQASHGE-PWAGAQTPER 366 Query 102 LAGELASMASWLGLGGIAVSTRGDLAGELCAA 133 LAGEL +MA+WLGL + V RGDLA L A Sbjct 367 LAGELRTMAAWLGLERVRVEPRGDLAERLTGA 398 >gi|325963929|ref|YP_004241835.1| hypothetical protein Asphe3_25760 [Arthrobacter phenanthrenivorans Sphe3] gi|323470016|gb|ADX73701.1| uncharacterized conserved protein [Arthrobacter phenanthrenivorans Sphe3] Length=413 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/90 (49%), Positives = 49/90 (55%), Gaps = 4/90 (4%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KRR+ YYV P L VARVD K DR L V E + P T AE LA EL MA Sbjct 318 KRRYGYYVLPFLLRDRIVARVDLKADRQGGRLLVRSAFAEPEAPADTAAE-LAAELRLMA 376 Query 111 SWLGLGGIAVSTRGDLAGELC-AATKRTNG 139 WLGL + V GDLAG L AA + T+G Sbjct 377 EWLGLATVEVFPVGDLAGSLARAAGQGTDG 406 >gi|291299738|ref|YP_003511016.1| hypothetical protein Snas_2233 [Stackebrandtia nassauensis DSM 44728] gi|290568958|gb|ADD41923.1| protein of unknown function DUF1006 [Stackebrandtia nassauensis DSM 44728] Length=407 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/88 (49%), Positives = 48/88 (55%), Gaps = 4/88 (4%) Query 52 AKRRHLYYVRP--LDGHPVARVDRKTDRAADSL--PVAGVLGELDIPPVTVAEGLAGELA 107 AKR H YYV P L H VARVD K DRAA L P A +D VA LA EL Sbjct 318 AKRVHGYYVLPFLLGEHLVARVDLKADRAAGVLRVPAAWREEHVDGDTELVAGELAAELR 377 Query 108 SMASWLGLGGIAVSTRGDLAGELCAATK 135 +A WLGL IA +GDLA L +A + Sbjct 378 ELADWLGLAEIAPPVKGDLAAALTSALR 405 >gi|197103999|ref|YP_002129376.1| hypothetical protein PHZ_c0533 [Phenylobacterium zucineum HLK1] gi|196477419|gb|ACG76947.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length=402 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/101 (46%), Positives = 56/101 (56%), Gaps = 4/101 (3%) Query 32 DRKRLISRIQVRQLDSAAVAAKRRHLYYVRP-LDGHPV-ARVDRKTDRAADSLPVAGVLG 89 DR + ++VR L+ A KR H YYV P L+G + ARVD K DR A L V Sbjct 296 DRTERMFGVKVR-LEIYTPAEKRTHGYYVLPFLEGDAITARVDLKADRKAGELIVQASHA 354 Query 90 ELDIPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGEL 130 E T A LA EL +MA+WLGLG + V+ RGDLA L Sbjct 355 EPWASDRTAAR-LAEELGTMAAWLGLGRVRVARRGDLAAAL 394 >gi|326384518|ref|ZP_08206198.1| hypothetical protein SCNU_16339 [Gordonia neofelifaecis NRRL B-59395] gi|326196863|gb|EGD54057.1| hypothetical protein SCNU_16339 [Gordonia neofelifaecis NRRL B-59395] Length=415 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/84 (47%), Positives = 47/84 (56%), Gaps = 2/84 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR H YYV P +D VARVD K DRAA +L V E P V++ LA +L +A Sbjct 326 KRVHGYYVLPYLMDEELVARVDLKADRAAGTLRVLSAHLEPGADPSAVSDSLACDLGRLA 385 Query 111 SWLGLGGIAVSTRGDLAGELCAAT 134 +W GL + VS GDLA L AA Sbjct 386 AWRGLDTVDVSGGGDLAKRLTAAV 409 >gi|262202111|ref|YP_003273319.1| hypothetical protein Gbro_2178 [Gordonia bronchialis DSM 43247] gi|262085458|gb|ACY21426.1| protein of unknown function DUF1006 [Gordonia bronchialis DSM 43247] Length=405 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/84 (48%), Positives = 43/84 (52%), Gaps = 2/84 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR H YYV P L ARVD K DR A L V G E VAE LA +L SMA Sbjct 322 KRVHGYYVLPYLLGTDIAARVDLKADRKAGVLQVLGSYLEPGQQGTEVAERLAADLRSMA 381 Query 111 SWLGLGGIAVSTRGDLAGELCAAT 134 WLGL + V RGD A L +A Sbjct 382 DWLGLERVQVGRRGDFASTLRSAV 405 >gi|269957290|ref|YP_003327079.1| hypothetical protein Xcel_2506 [Xylanimonas cellulosilytica DSM 15894] gi|269305971|gb|ACZ31521.1| protein of unknown function DUF1006 [Xylanimonas cellulosilytica DSM 15894] Length=432 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/88 (47%), Positives = 46/88 (53%), Gaps = 3/88 (3%) Query 51 AAKRRHLYYVRPL--DGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 AAKR++ YYV P D ARVD K DR A L V E P T E LA EL + Sbjct 345 AAKRQYGYYVLPFLEDERVTARVDLKADRQARVLLVQAAHAEPWATPQT-PERLARELRT 403 Query 109 MASWLGLGGIAVSTRGDLAGELCAATKR 136 MA WL L + V+ RGDLA L A R Sbjct 404 MAGWLRLDEVVVAPRGDLAPALAAVVGR 431 >gi|343927026|ref|ZP_08766514.1| hypothetical protein GOALK_077_00500 [Gordonia alkanivorans NBRC 16433] gi|343763084|dbj|GAA13440.1| hypothetical protein GOALK_077_00500 [Gordonia alkanivorans NBRC 16433] Length=426 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/80 (47%), Positives = 45/80 (57%), Gaps = 2/80 (2%) Query 53 KRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELASMA 110 KR H YYV P L ARVD K DR + +L V G E TVAE LA +L + A Sbjct 341 KRIHGYYVLPYLLGTDIAARVDLKADRRSRTLLVLGAFCESGHDRGTVAERLAADLRTFA 400 Query 111 SWLGLGGIAVSTRGDLAGEL 130 WL L ++V T+GDLA +L Sbjct 401 RWLDLDDVSVGTKGDLARDL 420 >gi|118472563|ref|YP_887014.1| hypothetical protein MSMEG_2679 [Mycobacterium smegmatis str. MC2 155] gi|118173850|gb|ABK74746.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=398 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/79 (50%), Positives = 44/79 (56%), Gaps = 4/79 (5%) Query 51 AAKRRHLYYVRP--LDGHPVARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 A +R+ YYV P LDG V RVD K AA L V G E VA+ LAGEL S Sbjct 315 APQRQFGYYVWPFLLDGRLVGRVDLKRTDAA--LQVLGAFSEDGRDRAHVAQALAGELRS 372 Query 109 MASWLGLGGIAVSTRGDLA 127 MA WLG+ + V RGDLA Sbjct 373 MAGWLGVPAVEVGDRGDLA 391 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/53 (48%), Positives = 31/53 (59%), Gaps = 0/53 (0%) Query 1 MSAATAAWDRRAAVVVGGVAEPGSAGPIAGADRKRLISRIQVRQLDSAAVAAK 53 M+ T A RR AV G EP G + A +RLI+RIQV QLDS +VA + Sbjct 1 MATLTVAQARRIAVAAQGFHEPRPRGSVTRAHVRRLINRIQVLQLDSVSVAVR 53 >gi|167646707|ref|YP_001684370.1| hypothetical protein Caul_2745 [Caulobacter sp. K31] gi|167349137|gb|ABZ71872.1| protein of unknown function DUF1006 [Caulobacter sp. K31] Length=450 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/105 (43%), Positives = 53/105 (51%), Gaps = 4/105 (3%) Query 32 DRKRLISRIQVRQLDSAAVAAKRRHLYYVRP-LDGHPV-ARVDRKTDRAADSLPVAGVLG 89 +R + I++R L+ A KR H YYV P L G + ARVD K DR A L V Sbjct 345 ERAERLFDIRIR-LEIYTPAHKRTHGYYVLPFLQGEAITARVDLKADRKAGVLRVLSAHR 403 Query 90 ELDIPPVTVAEGLAGELASMASWLGLGGIAVSTRGDLAGELCAAT 134 E A LA EL MA WLGL G+AV+ GDLA L T Sbjct 404 E-PAANARTAPLLAAELKLMAGWLGLAGVAVADSGDLAAALAVET 447 >gi|145593934|ref|YP_001158231.1| hypothetical protein Strop_1386 [Salinispora tropica CNB-440] gi|145303271|gb|ABP53853.1| protein of unknown function DUF1006 [Salinispora tropica CNB-440] Length=410 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/91 (46%), Positives = 44/91 (49%), Gaps = 2/91 (2%) Query 51 AAKRRHLYYVRP-LDGHPV-ARVDRKTDRAADSLPVAGVLGELDIPPVTVAEGLAGELAS 108 A KR H YYV P L G ARVD K DR + L V E + P A LA EL Sbjct 318 APKRVHGYYVLPFLQGERFTARVDLKADRKSGVLLVPAAWQEPGVDPGETAFALAAELHR 377 Query 109 MASWLGLGGIAVSTRGDLAGELCAATKRTNG 139 A WLGL +A GDLA L AA K G Sbjct 378 FAGWLGLDAVAPPGAGDLAVPLAAALKSVAG 408 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131443546824 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40