BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2769c

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57117023|ref|YP_177907.1|  PE family protein [Mycobacterium tu...   514    5e-144
gi|254232867|ref|ZP_04926194.1|  PE family protein [Mycobacterium...   513    1e-143
gi|289758896|ref|ZP_06518274.1|  PE family protein [Mycobacterium...   511    4e-143
gi|15842307|ref|NP_337344.1|  PE family protein [Mycobacterium tu...   511    4e-143
gi|31793944|ref|NP_856437.1|  PE family protein [Mycobacterium bo...   511    6e-143
gi|254365420|ref|ZP_04981465.1|  PE family protein [Mycobacterium...   511    6e-143
gi|289444314|ref|ZP_06434058.1|  PE family protein [Mycobacterium...   509    2e-142
gi|289751426|ref|ZP_06510804.1|  PE family protein [Mycobacterium...   506    2e-141
gi|339295619|gb|AEJ47730.1|  PE family protein [Mycobacterium tub...   490    7e-137
gi|183981962|ref|YP_001850253.1|  PE family protein [Mycobacteriu...   282    3e-74 
gi|118619702|ref|YP_908034.1|  PE family protein [Mycobacterium u...   242    5e-62 
gi|183984422|ref|YP_001852713.1|  PE family protein, PE8 [Mycobac...   241    1e-61 
gi|289573680|ref|ZP_06453907.1|  PE family protein [Mycobacterium...   233    3e-59 
gi|240170331|ref|ZP_04748990.1|  PE family protein, PE8 [Mycobact...   230    2e-58 
gi|15840469|ref|NP_335506.1|  PE family protein [Mycobacterium tu...   229    3e-58 
gi|167969300|ref|ZP_02551577.1|  PE family protein [Mycobacterium...   219    3e-55 
gi|289744778|ref|ZP_06504156.1|  PE family protein [Mycobacterium...   206    3e-51 
gi|240173303|ref|ZP_04751961.1|  PE family protein [Mycobacterium...   189    4e-46 
gi|298526235|ref|ZP_07013644.1|  PE family protein [Mycobacterium...   171    2e-40 
gi|212596283|gb|ACJ35566.1|  PE5 [Mycobacterium intracellulare AT...   162    5e-38 
gi|41408674|ref|NP_961510.1|  hypothetical protein MAP2576c [Myco...   153    2e-35 
gi|342862086|ref|ZP_08718729.1|  PE family protein [Mycobacterium...   149    4e-34 
gi|333989636|ref|YP_004522250.1|  PE family protein PE8 [Mycobact...   125    1e-26 
gi|342861643|ref|ZP_08718289.1|  PE family protein [Mycobacterium...   122    7e-26 
gi|289761176|ref|ZP_06520554.1|  LOW QUALITY PROTEIN: PE family p...   121    1e-25 
gi|342861310|ref|ZP_08717958.1|  hypothetical protein MCOL_20601 ...   112    5e-23 
gi|118618471|ref|YP_906803.1|  PE family protein [Mycobacterium u...   107    3e-21 
gi|333989643|ref|YP_004522257.1|  PE-PGRS family protein [Mycobac...   107    3e-21 
gi|183982677|ref|YP_001850968.1|  PE family protein, PE19_1 [Myco...   106    3e-21 
gi|240172414|ref|ZP_04751073.1|  PE family protein, PE19_1 [Mycob...   106    3e-21 
gi|296166245|ref|ZP_06848684.1|  PE family protein [Mycobacterium...   103    2e-20 
gi|254774223|ref|ZP_05215739.1|  PE family protein [Mycobacterium...   103    3e-20 
gi|254822878|ref|ZP_05227879.1|  PE family protein [Mycobacterium...   103    3e-20 
gi|342861305|ref|ZP_08717953.1|  hypothetical protein MCOL_20576 ...   103    4e-20 
gi|296170606|ref|ZP_06852185.1|  PE family protein [Mycobacterium...   102    8e-20 
gi|296165761|ref|ZP_06848275.1|  PE family protein [Mycobacterium...   101    1e-19 
gi|296169912|ref|ZP_06851523.1|  PE family protein [Mycobacterium...   101    1e-19 
gi|254775399|ref|ZP_05216915.1|  hypothetical protein MaviaA2_121...   101    1e-19 
gi|296164779|ref|ZP_06847341.1|  PE family protein [Mycobacterium...   100    4e-19 
gi|254822121|ref|ZP_05227122.1|  hypothetical protein MintA_19457...  99.8    4e-19 
gi|254820293|ref|ZP_05225294.1|  hypothetical protein MintA_10211...  99.8    4e-19 
gi|212595780|gb|ACJ35522.1|  PE4 [Mycobacterium avium subsp. avium]   99.0    6e-19 
gi|240171995|ref|ZP_04750654.1|  PE family protein [Mycobacterium...  99.0    7e-19 
gi|254774063|ref|ZP_05215579.1|  hypothetical protein MaviaA2_052...  99.0    8e-19 
gi|183984754|ref|YP_001853045.1|  PE-PGRS family protein [Mycobac...  98.2    1e-18 
gi|296164186|ref|ZP_06846786.1|  PE family protein [Mycobacterium...  98.2    1e-18 
gi|41407605|ref|NP_960441.1|  hypothetical protein MAP1507 [Mycob...  95.9    7e-18 
gi|342861297|ref|ZP_08717945.1|  hypothetical protein MCOL_20536 ...  94.0    2e-17 
gi|333989806|ref|YP_004522420.1|  PE family protein PE19 [Mycobac...  93.6    3e-17 
gi|15841256|ref|NP_336293.1|  PE family protein [Mycobacterium tu...  92.8    4e-17 


>gi|57117023|ref|YP_177907.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148662611|ref|YP_001284134.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823957|ref|YP_001288711.1| PE family protein [Mycobacterium tuberculosis F11]
 37 more sequence titles
 
gi|167968598|ref|ZP_02550875.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|253798148|ref|YP_003031149.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254551828|ref|ZP_05142275.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553445|ref|ZP_06442655.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289762941|ref|ZP_06522319.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|297635378|ref|ZP_06953158.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297732376|ref|ZP_06961494.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|306777050|ref|ZP_07415387.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306780952|ref|ZP_07419289.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|306785580|ref|ZP_07423902.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306790175|ref|ZP_07428497.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306794259|ref|ZP_07432561.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306798677|ref|ZP_07436979.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|306804532|ref|ZP_07441200.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306973165|ref|ZP_07485826.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307080874|ref|ZP_07490044.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307085465|ref|ZP_07494578.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|313659708|ref|ZP_07816588.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|7478605|pir||H70881 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|41353451|emb|CAE55521.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|148506763|gb|ABQ74572.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148722484|gb|ABR07109.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|253319651|gb|ACT24254.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289438077|gb|EFD20570.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289710447|gb|EFD74463.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|308214560|gb|EFO73959.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308326207|gb|EFP15058.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308329764|gb|EFP18615.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308333370|gb|EFP22221.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308337393|gb|EFP26244.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308341058|gb|EFP29909.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308348863|gb|EFP37714.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308357428|gb|EFP46279.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308361379|gb|EFP50230.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308364989|gb|EFP53840.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|328457921|gb|AEB03344.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|344220597|gb|AEN01228.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=275

 Score =  514 bits (1324),  Expect = 5e-144, Method: Compositional matrix adjust.
 Identities = 275/275 (100%), Positives = 275/275 (100%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275


>gi|254232867|ref|ZP_04926194.1| PE family protein [Mycobacterium tuberculosis C]
 gi|289746572|ref|ZP_06505950.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|124601926|gb|EAY60936.1| PE family protein [Mycobacterium tuberculosis C]
 gi|289687100|gb|EFD54588.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|326904384|gb|EGE51317.1| PE family protein [Mycobacterium tuberculosis W-148]
Length=275

 Score =  513 bits (1321),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 274/275 (99%), Positives = 275/275 (100%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|289758896|ref|ZP_06518274.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|294994138|ref|ZP_06799829.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|289714460|gb|EFD78472.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|339299236|gb|AEJ51346.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=275

 Score =  511 bits (1316),  Expect = 4e-143, Method: Compositional matrix adjust.
 Identities = 273/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNW SAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWVSAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|15842307|ref|NP_337344.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13882602|gb|AAK47158.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|323718616|gb|EGB27780.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=275

 Score =  511 bits (1316),  Expect = 4e-143, Method: Compositional matrix adjust.
 Identities = 273/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISV QAPLFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVRQAPLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|31793944|ref|NP_856437.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|121638648|ref|YP_978872.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224991140|ref|YP_002645829.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 14 more sequence titles
 
gi|289448426|ref|ZP_06438170.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289575467|ref|ZP_06455694.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289754875|ref|ZP_06514253.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|339632781|ref|YP_004724423.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340627771|ref|YP_004746223.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|31619538|emb|CAD94976.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121494296|emb|CAL72774.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224774255|dbj|BAH27061.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289421384|gb|EFD18585.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289539898|gb|EFD44476.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289695462|gb|EFD62891.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|339332137|emb|CCC27844.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340005961|emb|CCC45128.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341602686|emb|CCC65362.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=275

 Score =  511 bits (1315),  Expect = 6e-143, Method: Compositional matrix adjust.
 Identities = 273/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQASLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|254365420|ref|ZP_04981465.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
 gi|134150933|gb|EBA42978.1| PE family protein [Mycobacterium tuberculosis str. Haarlem]
Length=275

 Score =  511 bits (1315),  Expect = 6e-143, Method: Compositional matrix adjust.
 Identities = 273/275 (99%), Positives = 274/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAA PLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAALPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|289444314|ref|ZP_06434058.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289570948|ref|ZP_06451175.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289417233|gb|EFD14473.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289544702|gb|EFD48350.1| PE family protein [Mycobacterium tuberculosis T17]
Length=275

 Score =  509 bits (1310),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 272/275 (99%), Positives = 273/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIP AADEISVLQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPVAADEISVLQASLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|289751426|ref|ZP_06510804.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289692013|gb|EFD59442.1| PE family protein [Mycobacterium tuberculosis T92]
Length=275

 Score =  506 bits (1302),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 271/275 (99%), Positives = 272/275 (99%), Gaps = 0/275 (0%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGK ETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKFETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQASLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180
            ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE
Sbjct  121  ISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGE  180

Query  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGT  240
            APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWT AAPHGAAGT
Sbjct  181  APIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTPAAPHGAAGT  240

Query  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            VIPGMPGLASATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  VIPGMPGLASATRSSAGFGAPRYGAKPIVMPKPAV  275


>gi|339295619|gb|AEJ47730.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
Length=265

 Score =  490 bits (1262),  Expect = 7e-137, Method: Compositional matrix adjust.
 Identities = 263/265 (99%), Positives = 265/265 (100%), Gaps = 0/265 (0%)

Query  11   LAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYGTLYQQVSAEA  70
            +AAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYGTLYQQVSAEA
Sbjct  1    MAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYGTLYQQVSAEA  60

Query  71   AAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSWISDIANIFNI  130
            AAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSWISDIANIFNI
Sbjct  61   AAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSWISDIANIFNI  120

Query  131  GAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGEAPIAAGLGAA  190
            GAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGEAPIAAGLGAA
Sbjct  121  GAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGEAPIAAGLGAA  180

Query  191  PLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLAS  250
            PLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLAS
Sbjct  181  PLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTVIPGMPGLAS  240

Query  251  ATRSSAGFGAPRYGAKPIVVPKPAV  275
            ATRSSAGFGAPRYGAKPIV+PKPAV
Sbjct  241  ATRSSAGFGAPRYGAKPIVMPKPAV  265


>gi|183981962|ref|YP_001850253.1| PE family protein [Mycobacterium marinum M]
 gi|183175288|gb|ACC40398.1| PE family protein [Mycobacterium marinum M]
Length=267

 Score =  282 bits (722),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 195/277 (71%), Positives = 216/277 (78%), Gaps = 15/277 (5%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIG+ M A+N AA APTTTGVIPAAADE+S LQA LFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGATMDAENVAAVAPTTTGVIPAAADEVSALQASLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILG-STPGKVPS  119
            TLYQQVSAEAA +YD+FV+TLGVSAGTYAA E ANSSAAASPLSGI   LG STP     
Sbjct  61   TLYQQVSAEAATLYDMFVRTLGVSAGTYAAAETANSSAAASPLSGIIDALGASTPA----  116

Query  120  WISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVG  179
              SDIANI NIGAGNWASA+SDLL LA GGLLPAA +AA  EG     +++   +  +  
Sbjct  117  --SDIANIVNIGAGNWASASSDLLALAGGGLLPAAVQAA--EG----DVAQAAGSAESAA  168

Query  180  EAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTS--TLQGAGWTTAAPHGA  237
             A  AA LG AP+ AG+   S++ A S  PSWAGQA LVSSTS   L+GAGWT  AP  A
Sbjct  169  AAAGAASLGEAPIVAGVGGVSAMSAASASPSWAGQATLVSSTSAGALRGAGWTVPAPQAA  228

Query  238  AGTVIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPA  274
             GTVIPGMPGLA+ATR+SAGFGAPRYG KPIV+PKPA
Sbjct  229  PGTVIPGMPGLAAATRNSAGFGAPRYGVKPIVMPKPA  265


>gi|118619702|ref|YP_908034.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118571812|gb|ABL06563.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=274

 Score =  242 bits (617),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 180/284 (64%), Positives = 209/284 (74%), Gaps = 22/284 (7%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL T PEEL AAA +L TIGS+M AQNAAAAAPTT  + PAA DE+S LQA LFTAYG
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTV-IAPAALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIAS----ILGSTPGK  116
            T YQQVSA+A A++D+FV TLG SAGTY ATE  NS+AAASPL GI S     + +T   
Sbjct  60   TYYQQVSADAQAMHDMFVNTLGASAGTYGATENLNSAAAASPLDGITSGISGFIQNTGSI  119

Query  117  VP-SWISDIANIFNIGAGNWASAASDLLGLASGGLLPAAE--EAALEEGLE-GAG-LSEL  171
            +P SW ++I N+ NIG GNWASA+S L+GLA GGLLPA E  EA +  G E G G LSEL
Sbjct  120  IPDSWSNNIGNLTNIGVGNWASASSTLIGLAGGGLLPAEEAAEADVSLGAEAGLGALSEL  179

Query  172  GAAEAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTT  231
            G AEAA+G          AP+AAG+  AS++G LSVPP+WAG A LVSST+ L GAGWT 
Sbjct  180  GGAEAALG----------APIAAGIGGASAVGMLSVPPTWAGSATLVSSTTPLAGAGWTA  229

Query  232  AAPHGAAGTVIPGMP-GLASATRSSAGFGAPRYGAKPIVVPKPA  274
            AAP  A GT + G+P GL SA R+SAGFGAPRYG KPIV+PKPA
Sbjct  230  AAPTAAPGTFM-GVPAGLGSAARNSAGFGAPRYGVKPIVMPKPA  272


>gi|183984422|ref|YP_001852713.1| PE family protein, PE8 [Mycobacterium marinum M]
 gi|183177748|gb|ACC42858.1| PE family protein, PE8 [Mycobacterium marinum M]
Length=274

 Score =  241 bits (614),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 180/284 (64%), Positives = 208/284 (74%), Gaps = 22/284 (7%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL T PEEL AAA +L TIGS+M AQNAAAAAPTT  + PAA DE+S LQA LFTAYG
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGSSMSAQNAAAAAPTTV-IAPAALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIAS----ILGSTPGK  116
            T YQQVSA+A A++D+FV TLG SAGTY ATE  NS+AAASPL GI S     + +    
Sbjct  60   TYYQQVSADAQAMHDMFVNTLGASAGTYGATENLNSAAAASPLDGITSGISGFIQNAGSI  119

Query  117  VP-SWISDIANIFNIGAGNWASAASDLLGLASGGLLPAAE--EAALEEGLE-GAG-LSEL  171
            +P SW S+I N+ NIG GNWASA+S L+GLA GGLLPA E  EA +  G E G G LSEL
Sbjct  120  IPDSWSSNIGNLTNIGVGNWASASSTLIGLAGGGLLPAEEAAEADVSLGAEAGLGALSEL  179

Query  172  GAAEAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTT  231
            G AEAA+G          AP+AAG+  AS++G LSVPP+WAG A LVSST+ L GAGWT 
Sbjct  180  GGAEAALG----------APIAAGIGGASAVGMLSVPPTWAGSATLVSSTTPLAGAGWTA  229

Query  232  AAPHGAAGTVIPGMP-GLASATRSSAGFGAPRYGAKPIVVPKPA  274
            AAP  A GT + G+P GL SA R+SAGFGAPRYG KPIV+PKPA
Sbjct  230  AAPTAAPGTFM-GVPAGLGSAARNSAGFGAPRYGVKPIVMPKPA  272


>gi|289573680|ref|ZP_06453907.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289538111|gb|EFD42689.1| PE family protein [Mycobacterium tuberculosis K85]
Length=275

 Score =  233 bits (593),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 182/279 (66%), Positives = 203/279 (73%), Gaps = 11/279 (3%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT     AA DE+S LQA LFTAYG
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAP-AALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119

Query  117  VPSWISD-IANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAE  175
             P  +S  I NI NIGAGNWASA S L+GLA GGLLPA E A     L G        A 
Sbjct  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAASALGGETALGELGAL  179

Query  176  AAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPH  235
             A       A LG A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP 
Sbjct  180  GAA-----EAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQ  234

Query  236  GAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPA  274
             AAGT IPGMPG+ASA R+SAGFGAPRYG KPIV+PKPA
Sbjct  235  AAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273


>gi|240170331|ref|ZP_04748990.1| PE family protein, PE8 [Mycobacterium kansasii ATCC 12478]
Length=274

 Score =  230 bits (586),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 173/280 (62%), Positives = 200/280 (72%), Gaps = 16/280 (5%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL   PEEL AAA +L  +G+++ AQN AAAAPTT     AA DE+S LQA LFTAYG
Sbjct  1    MSFLQIVPEELTAAATQLGALGTSLTAQNTAAAAPTTAIAP-AALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIAS----ILGSTPGK  116
            TLYQQVSAEAAA++D+FV TLG SAGTY ATE+ NS+AA SPLSG+ S    ++G T G 
Sbjct  60   TLYQQVSAEAAAMHDMFVNTLGFSAGTYGATESLNSAAADSPLSGLTSGISGLIGGTTGM  119

Query  117  VP-SWISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAE  175
            +P S+    AN+ NIG GNWASA S+LLGLA GGLLPA E AA +        S LG   
Sbjct  120  IPDSFNGGFANMMNIGMGNWASATSNLLGLAGGGLLPAEEAAAAD--------SFLGGEA  171

Query  176  AAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTS--TLQGAGWTTAA  233
            A        A LG   +AAG+  AS+IGALSVPPSWAGQA LVSST+   LQGAGWT AA
Sbjct  172  ALGELGAAEAALGGGSVAAGIGEASAIGALSVPPSWAGQATLVSSTTAGALQGAGWTAAA  231

Query  234  PHGAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVVPKP  273
            P  A G + PG+PGLASA R+SAGFGAPRYG KPIV+PKP
Sbjct  232  PQAAPGMLYPGVPGLASAARNSAGFGAPRYGVKPIVMPKP  271


>gi|15840469|ref|NP_335506.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792232|ref|NP_854725.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116814|ref|YP_177779.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 70 more sequence titles
 
gi|121636970|ref|YP_977193.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660823|ref|YP_001282346.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148822249|ref|YP_001287003.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224989442|ref|YP_002644129.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799928|ref|YP_003032929.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231331|ref|ZP_04924658.1| PE family protein [Mycobacterium tuberculosis C]
 gi|254550025|ref|ZP_05140472.1| PE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289442463|ref|ZP_06432207.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289446621|ref|ZP_06436365.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289555177|ref|ZP_06444387.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289569020|ref|ZP_06449247.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289749573|ref|ZP_06508951.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289753102|ref|ZP_06512480.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289757124|ref|ZP_06516502.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|297633569|ref|ZP_06951349.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|298524537|ref|ZP_07011946.1| pe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306775178|ref|ZP_07413515.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306783740|ref|ZP_07422062.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|306788094|ref|ZP_07426416.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306792426|ref|ZP_07430728.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|306802716|ref|ZP_07439384.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|306806895|ref|ZP_07443563.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|306967095|ref|ZP_07479756.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|306971285|ref|ZP_07483946.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307079013|ref|ZP_07488183.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307083575|ref|ZP_07492688.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|308370084|ref|ZP_07420245.2| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308374179|ref|ZP_07435130.2| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|313657883|ref|ZP_07814763.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|339631102|ref|YP_004722744.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340626051|ref|YP_004744503.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478566|pir||C70625 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13880642|gb|AAK45320.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31617820|emb|CAD93929.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|41353636|emb|CAE55350.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121492617|emb|CAL71085.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600390|gb|EAY59400.1| PE family protein [Mycobacterium tuberculosis C]
 gi|148504975|gb|ABQ72784.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148720776|gb|ABR05401.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224772555|dbj|BAH25361.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321431|gb|ACT26034.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415382|gb|EFD12622.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289419579|gb|EFD16780.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439809|gb|EFD22302.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289542774|gb|EFD46422.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289690160|gb|EFD57589.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289693689|gb|EFD61118.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289712688|gb|EFD76700.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|298494331|gb|EFI29625.1| pe family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216290|gb|EFO75689.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308325363|gb|EFP14214.1| PE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308331481|gb|EFP20332.1| PE family protein [Mycobacterium tuberculosis SUMu003]
 gi|308335288|gb|EFP24139.1| PE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308339095|gb|EFP27946.1| PE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308342767|gb|EFP31618.1| PE family protein [Mycobacterium tuberculosis SUMu006]
 gi|308346653|gb|EFP35504.1| PE family protein [Mycobacterium tuberculosis SUMu007]
 gi|308350568|gb|EFP39419.1| PE family protein [Mycobacterium tuberculosis SUMu008]
 gi|308355224|gb|EFP44075.1| PE family protein [Mycobacterium tuberculosis SUMu009]
 gi|308359180|gb|EFP48031.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308363091|gb|EFP51942.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308366743|gb|EFP55594.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323720541|gb|EGB29623.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904731|gb|EGE51664.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|328459672|gb|AEB05095.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339294040|gb|AEJ46151.1| PE family protein [Mycobacterium tuberculosis CCDC5079]
 gi|339297680|gb|AEJ49790.1| PE family protein [Mycobacterium tuberculosis CCDC5180]
 gi|339330458|emb|CCC26123.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340004241|emb|CCC43382.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341600986|emb|CCC63657.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344218867|gb|AEM99497.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=275

 Score =  229 bits (584),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 180/279 (65%), Positives = 202/279 (73%), Gaps = 11/279 (3%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT     AA DE+S LQA LFTAYG
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAP-AALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119

Query  117  VPSWISD-IANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAE  175
             P  +S  I NI NIGAGNWASA S L+GLA GGLLPA E A        + L    A  
Sbjct  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAA-----SALGGEAALG  174

Query  176  AAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPH  235
                     A LG A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP 
Sbjct  175  ELGALGAAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQ  234

Query  236  GAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPA  274
             AAGT IPGMPG+ASA R+SAGFGAPRYG KPIV+PKPA
Sbjct  235  AAAGTFIPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  273


>gi|167969300|ref|ZP_02551577.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|294995229|ref|ZP_06800920.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297730554|ref|ZP_06959672.1| PE family protein [Mycobacterium tuberculosis KZN R506]
Length=269

 Score =  219 bits (558),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 175/273 (65%), Positives = 197/273 (73%), Gaps = 11/273 (4%)

Query  7    QPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYGTLYQQV  66
             PEEL AAA +L TIG+AM AQNAAAAAPTT     AA DE+S LQA LFTAYGT YQQV
Sbjct  1    MPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAP-AALDEVSALQAALFTAYGTFYQQV  59

Query  67   SAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGKVPSWIS  122
            SAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G  P  +S
Sbjct  60   SAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGLFPPELS  119

Query  123  D-IANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGEA  181
              I NI NIGAGNWASA S L+GLA GGLLPA E A        + L    A        
Sbjct  120  GGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAA-----SALGGEAALGELGALG  174

Query  182  PIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPHGAAGTV  241
               A LG A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP  AAGT 
Sbjct  175  AAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQAAAGTF  234

Query  242  IPGMPGLASATRSSAGFGAPRYGAKPIVVPKPA  274
            IPGMPG+ASA R+SAGFGAPRYG KPIV+PKPA
Sbjct  235  IPGMPGVASAARNSAGFGAPRYGVKPIVMPKPA  267


>gi|289744778|ref|ZP_06504156.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289685306|gb|EFD52794.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=275

 Score =  206 bits (525),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 171/279 (62%), Positives = 195/279 (70%), Gaps = 11/279 (3%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT     AA DE+S LQA LFTAYG
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTAIAP-AALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGI----ASILGSTPGK  116
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    ++I+ +T G 
Sbjct  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGITGEASAIIQATTGL  119

Query  117  VPSWISD-IANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAE  175
             P  +S  I NI NIGAGNWASA S L+GLA GGLLPA E A        + L    A  
Sbjct  120  FPPELSGGIGNILNIGAGNWASATSTLIGLAGGGLLPAEEAAEAA-----SALGGEAALG  174

Query  176  AAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVSSTSTLQGAGWTTAAPH  235
                     A LG A +AAGL  AS+IG LSVPP+WAGQA LVS+TSTL GAGWT AAP 
Sbjct  175  ELGALGAAEAALGEAGIAAGLGSASAIGMLSVPPAWAGQATLVSTTSTLPGAGWTAAAPQ  234

Query  236  GAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPA  274
             AAGT IPG+PG+ASA R+SAGF       + IV+PKPA
Sbjct  235  AAAGTFIPGLPGVASAARNSAGFCVHALRRQHIVMPKPA  273


>gi|240173303|ref|ZP_04751961.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=146

 Score =  189 bits (480),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 126/148 (86%), Gaps = 3/148 (2%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQP+ELAAAAGKL+TIG+ M A+N AAA PTT GVIPAAADE+S+LQA +FTAYG
Sbjct  1    MSFLTTQPDELAAAAGKLQTIGATMEAENVAAAVPTT-GVIPAAADEVSMLQASMFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            +LYQQ+SAEAAA+Y++ V TLGVSAGTYAA EAANSSAAASPLS I   L   P + P W
Sbjct  60   SLYQQISAEAAAMYEMLVNTLGVSAGTYAAAEAANSSAAASPLSDILGAL--LPSQTPGW  117

Query  121  ISDIANIFNIGAGNWASAASDLLGLASG  148
            I+D+ANIFNIG GNWASAASDLL L SG
Sbjct  118  ITDLANIFNIGTGNWASAASDLLALGSG  145


>gi|298526235|ref|ZP_07013644.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298496029|gb|EFI31323.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
Length=142

 Score =  171 bits (432),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 117/135 (87%), Positives = 121/135 (90%), Gaps = 2/135 (1%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG
Sbjct  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPS-  119
            TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASIL   PG+ P  
Sbjct  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILVPRPGRCPPG  120

Query  120  -WISDIANIFNIGAG  133
              I  I++   +G G
Sbjct  121  FQILPISSTLGLGTG  135


>gi|212596283|gb|ACJ35566.1| PE5 [Mycobacterium intracellulare ATCC 13950]
Length=265

 Score =  162 bits (410),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 126/280 (45%), Positives = 167/280 (60%), Gaps = 20/280 (7%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TT+PE L AAA  LE +GS+M AQNAAAAAPTT+ + PAAADE+S LQA  F+AYG
Sbjct  1    MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTS-IAPAAADEVSALQAAQFSAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANS-SAAASPLSGIASILGSTPGKVPS  119
              YQQVSA+A A++   V  L  SAG+Y  TE AN  + AAS LS +A+   +     P+
Sbjct  60   AWYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTTAASSLSPLAASPTAAADPPPA  119

Query  120  WISDIANIFNIGAG-NWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAV  178
              + +     IG G N  +AASD + L  G   P    A +       GL+   A   A 
Sbjct  120  GSTTLGT--GIGWGQNVGAAASDFITLGEGQFAPVTGAAGIPNFTP--GLTSASAPAPAA  175

Query  179  GEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWA--GQANLVSSTSTLQGAGWTTAAPHG  236
                +A+          + R  +IGALSVPPSWA  G  ++ ++ + L GAG+T+AAPH 
Sbjct  176  PAPVLAS----------MGRGPAIGALSVPPSWAAGGVPSVNATPTQLVGAGFTSAAPHA  225

Query  237  AAGTVIP-GMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            A  T +P G+P +A++ R   G GAPRYG KP V+PKPA+
Sbjct  226  APVTTVPGGLPSMATSGRGGYGLGAPRYGVKPTVMPKPAI  265


>gi|41408674|ref|NP_961510.1| hypothetical protein MAP2576c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118463687|ref|YP_880590.1| PE family protein [Mycobacterium avium 104]
 gi|41397032|gb|AAS04893.1| PE_6 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118164974|gb|ABK65871.1| PE family protein [Mycobacterium avium 104]
 gi|212595794|gb|ACJ35523.1| PE5 [Mycobacterium avium subsp. avium]
Length=278

 Score =  153 bits (387),  Expect = 2e-35, Method: Compositional matrix adjust.
 Identities = 126/283 (45%), Positives = 169/283 (60%), Gaps = 13/283 (4%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TT+PE L A A  LE +GS+M AQNAAAAAPTT+ + PAAADE+S LQA  F+AYG
Sbjct  1    MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTS-IAPAAADEVSALQAAQFSAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANS-SAAASPLSGIA-SILGSTPGKVP  118
            T YQQVSA+A A++   V+ L  +A +Y ATEAAN  + +A+ L G+A +++ +      
Sbjct  60   TWYQQVSAQAKAIHQTLVQNLDTNADSYGATEAANRVNTSAAALQGLAPNVIPNAAPAAD  119

Query  119  SWISDIANI-FNIG-AGNWASAASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEA  176
               +   ++  +IG A N  +AASD + L  G   P    A +     G   +      A
Sbjct  120  PPPAGTTSLGTSIGWAQNVGAAASDFITLGEGQFAPVPGAAGIPNFNPGLTAATTAGPPA  179

Query  177  AVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWA--GQANLVSST-STLQGAGWTTAA  233
                    A    AP+ A + R  SIG LSVPPSWA  G A   ++T + L GAG+T+AA
Sbjct  180  PA----APAAAAGAPVLASMGRGPSIGGLSVPPSWAPGGVAPAANATPAQLVGAGFTSAA  235

Query  234  PHGAAGTVIP-GMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            P  A  T +P G+P +A+A R   G GAPRYG KP V+PKPA+
Sbjct  236  PDTAPVTAVPGGVPSMATAGRGGYGLGAPRYGVKPTVMPKPAI  278


>gi|342862086|ref|ZP_08718729.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130390|gb|EGT83705.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=268

 Score =  149 bits (377),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 128/283 (46%), Positives = 162/283 (58%), Gaps = 23/283 (8%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TT+PE L A A  L+ +GS+M AQNAAAAAPTT+ + PAAADE+S LQA  F+AYG
Sbjct  1    MSFVTTRPEALLATASMLQALGSSMDAQNAAAAAPTTS-IAPAAADEVSALQAAQFSAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAAN---SSAAASPLSGIASILGSTPGKV  117
              YQQVSA+A AV+   V  L  +AG+Y  TE AN   +SAAA      A+     P   
Sbjct  60   AWYQQVSAQAKAVHQTMVANLNSNAGSYGETETANKVTTSAAALQQVAPAAAAADPPPGD  119

Query  118  PSWISDIANIFNIGAGNWASAASDLLGLASGGLLPAAEEAALEEGLEG--AGLSELGAAE  175
             +  ++I    N+G     SAASD + L  G   P    + +        AGL+    A 
Sbjct  120  AALGTEIEWGQNVG-----SAASDFITLGEGQFAPVPGASGIPNFNPDLAAGLTSAAPAS  174

Query  176  AAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWA--GQANLVSSTSTLQGAGWTTAA  233
            A    AP+ A +G  P         SIGALSVPPSWA  G      + +TL GAG+T AA
Sbjct  175  APTPAAPVLASVGQGP---------SIGALSVPPSWAAGGVPAATPTAATLTGAGFTAAA  225

Query  234  PHGAAGTVIP-GMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            PH A+ T IP G+P +A+  R   G GAPRYG KP+V+P P V
Sbjct  226  PHSASVTTIPGGLPSMATTGRGGYGLGAPRYGVKPVVMPTPTV  268


>gi|333989636|ref|YP_004522250.1| PE family protein PE8 [Mycobacterium sp. JDM601]
 gi|333485604|gb|AEF34996.1| PE family protein PE8 [Mycobacterium sp. JDM601]
Length=273

 Score =  125 bits (313),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 116/297 (40%), Positives = 153/297 (52%), Gaps = 47/297 (15%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TT PE +AA A  L+ IGSAM AQN AAAAPTT G+ PA ADE+SVLQA  F AYG
Sbjct  1    MSFVTTHPEAMAATASNLQAIGSAMTAQNTAAAAPTT-GIAPAGADEVSVLQATQFAAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATE-----------------AANSSAAASPL  103
             LYQQ+SA+AAA+ ++FV TL  SA +Y +TE                      +AA P 
Sbjct  60   QLYQQISAQAAAIQEMFVNTLRTSADSYGSTETANSAAADASAAGGLLGGLTGGSAADPA  119

Query  104  SGIASILGSTPGKVPSWISDIANIFNIGAGNWASAASDLLGLASGGLLPAA----EEAAL  159
             G+ ++            S+ A +  + AG   SAAS+  GL  G +   +      A  
Sbjct  120  YGLTAV-----------ASNSAILAAMQAGTIGSAASEFTGLGKGYITSPSGVVHHVAPS  168

Query  160  EEGLEGAGLSELGAAEAAVGEAPIAAGLGAAPLAAGLSRASSIGALSVPPSWAGQANLVS  219
            + G+  AGL+         G+   A    AA   AG   A + GA  +PP+WAG+    S
Sbjct  169  DSGMPSAGLT---------GQPAPATAATAASAGAGQPAARTTGA-PLPPAWAGEPAPAS  218

Query  220  ST-STLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSAGFGAPRYGAKPIVVPKPAV  275
            +T +TL G     AAP  +   V  G+P  +S   S    G  RYG KP V+P+P V
Sbjct  219  ATPATLSGTSTAAAAPRASTAAVPAGLPASSSEQGSR---GRLRYGIKPKVMPRPPV  272


>gi|342861643|ref|ZP_08718289.1| PE family protein [Mycobacterium colombiense CECT 3035]
 gi|342130777|gb|EGT84073.1| PE family protein [Mycobacterium colombiense CECT 3035]
Length=291

 Score =  122 bits (305),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 109/259 (43%), Positives = 146/259 (57%), Gaps = 38/259 (14%)

Query  46   DEISVLQAPLFTAYGTLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAA-----  100
            D +S  Q+ LF+ YGT YQ ++A+A A  + +  TLG+S+ +Y  TE  N++ A      
Sbjct  35   DPVSAQQSALFSTYGTTYQTLAAQAQAQLEQYASTLGISSNSYGDTETVNAAQAVLSNSN  94

Query  101  ---------------SPLSGIASILGST-PGKVPSWISDI-------ANIFNIGAGNWAS  137
                           +PL  ++ +LGST  G  PS +  I       ANI NIGAGNWAS
Sbjct  95   LAASPLAAAAATPSNTPLDFLSYLLGSTGNGTNPSMLGGIFGLSSNGANILNIGAGNWAS  154

Query  138  AASDLLGLASGGLLPAAEEAALEEGLEGAGLSELGAAEAAVGEAPIAAGLGAAPLAAGLS  197
            A SDLLG+A GGLLPAA     +        +  GAA+ A    P++ G+         +
Sbjct  155  AGSDLLGMAGGGLLPAAASDTGDA------AAAAGAADLAASTTPVSPGVAGMGAMPAAA  208

Query  198  --RASSIGALSVPPSWAGQANLVSST--STLQGAGWTTAAPHGAAGTVIPGMPGLASATR  253
              +A+ +  LSVPP+WAG    V+ T  + LQ  GWT AAP   AGTV+PGMPG+ +  R
Sbjct  209  MGQATMVSKLSVPPTWAGAVTPVAGTVAAPLQTVGWTAAAPQAGAGTVVPGMPGMGAMAR  268

Query  254  SSAGFGAPRYGAKPIVVPK  272
            +SAGFGAPRYG KPIV+PK
Sbjct  269  NSAGFGAPRYGVKPIVMPK  287


>gi|289761176|ref|ZP_06520554.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
GM 1503]
 gi|289708682|gb|EFD72698.1| LOW QUALITY PROTEIN: PE family protein [Mycobacterium tuberculosis 
GM 1503]
Length=278

 Score =  121 bits (304),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 91/148 (62%), Positives = 102/148 (69%), Gaps = 18/148 (12%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSFL T PEEL AAA +L TIG+AM AQNAAAAAPTT  + PAA DE+S LQA LFTAYG
Sbjct  1    MSFLKTVPEELTAAAAQLGTIGAAMAAQNAAAAAPTTA-IAPAALDEVSALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
            T YQQVSAEA A++D+FV TLG+SAGTY  TE+ NSSAAASPLSGI    G + G  PS 
Sbjct  60   TFYQQVSAEAQAMHDMFVNTLGISAGTYGVTESLNSSAAASPLSGIT---GESVGHHPS-  115

Query  121  ISDIANIFN------------IGAGNWA  136
              D   +F              GAGNWA
Sbjct  116  -DDGGCLFRPNSRVALATSSTSGAGNWA  142


>gi|342861310|ref|ZP_08717958.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
 gi|342131210|gb|EGT84491.1| hypothetical protein MCOL_20601 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  112 bits (280),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 62/92 (68%), Positives = 76/92 (83%), Gaps = 1/92 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+TIGS + AQNAAAAAPTT GV+PAAADE+S L A  F A+G
Sbjct  1   MSFVTTQPEALAAAAGNLQTIGSTLSAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHG  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATE  92
            +YQ VSA+AAA++++FV TL  S+G+YA TE
Sbjct  60  QMYQAVSAQAAAIHEMFVNTLSTSSGSYAVTE  91


>gi|118618471|ref|YP_906803.1| PE family protein [Mycobacterium ulcerans Agy99]
 gi|118570581|gb|ABL05332.1| PE family protein [Mycobacterium ulcerans Agy99]
Length=99

 Score =  107 bits (266),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 54/88 (62%), Positives = 72/88 (82%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MS++TTQPE LAAAA  L+ IGS + +QNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTT-GVVPAAADEVSALTAAQFVAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+A+A++++FV TLG+S+G+Y
Sbjct  60  QMYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|333989643|ref|YP_004522257.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
 gi|333485611|gb|AEF35003.1| PE-PGRS family protein [Mycobacterium sp. JDM601]
Length=99

 Score =  107 bits (266),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 57/88 (65%), Positives = 71/88 (81%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IGSA+ AQNAAA+APTT GV+PAAADE+S L A  F  + 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSALNAQNAAASAPTT-GVVPAAADEVSALTAAQFATHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
           TLYQ V+A+AAA++++FV TL  SA +Y
Sbjct  60  TLYQSVAAQAAAIHEMFVATLNGSAESY  87


>gi|183982677|ref|YP_001850968.1| PE family protein, PE19_1 [Mycobacterium marinum M]
 gi|183176003|gb|ACC41113.1| PE family protein, PE19_1 [Mycobacterium marinum M]
Length=99

 Score =  106 bits (265),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 54/88 (62%), Positives = 72/88 (82%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MS++TTQPE LAAAA  L+ IGS + +QNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSYVTTQPEALAAAASTLQGIGSTLSSQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+A+A++++FV TLG+S+G+Y
Sbjct  60  QMYQAVSAQASAIHEMFVNTLGISSGSY  87


>gi|240172414|ref|ZP_04751073.1| PE family protein, PE19_1 [Mycobacterium kansasii ATCC 12478]
Length=281

 Score =  106 bits (265),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 59/99 (60%), Positives = 73/99 (74%), Gaps = 1/99 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+ T PE L AA G+LE IGSA+   N  AA P   GVIPAAADE+S++ A  FTAYG
Sbjct  1   MSFVITLPEMLMAAVGRLEAIGSAVSTANVTAALPIA-GVIPAAADEVSMVTAASFTAYG  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99
            LYQ +SAEA  +++ FVK LG+SA +YAATEAAN++ A
Sbjct  60  QLYQAISAEAHLIHEQFVKALGLSANSYAATEAANATHA  98


>gi|296166245|ref|ZP_06848684.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898429|gb|EFG77996.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=191

 Score =  103 bits (257),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 89/151 (59%), Positives = 108/151 (72%), Gaps = 5/151 (3%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TTQPE L  AAGKLET+GSA+ A++AAAA PTT     AAADEIS LQA LFTAYG
Sbjct  1    MSFVTTQPEALLYAAGKLETLGSALAAESAAAAPPTTAIAP-AAADEISALQAALFTAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAAASPLSGIASILGSTPGKVPSW  120
             LYQ V+A+AA V+  FV+TL  SAG+Y ATE AN++A A P +  A+        VP  
Sbjct  60   ELYQSVNAQAANVHQQFVRTLNTSAGSYQATETANTAATALPYAAPAAAPQQA--AVPG-  116

Query  121  ISDIANIFNIGAGNWASAASDLLGLASGGLL  151
             S +ANI ++GAGN+ SA SDLL +A GGLL
Sbjct  117  -SGLANIADVGAGNFGSATSDLLAMAGGGLL  146


>gi|254774223|ref|ZP_05215739.1| PE family protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=173

 Score =  103 bits (256),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 63/108 (59%), Positives = 81/108 (75%), Gaps = 2/108 (1%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TT+PE L A A  LE +GS+M AQNAAAAAPTT+ + PAAADE+S LQA  F+AYG
Sbjct  1    MSFVTTRPEALLAVASMLEGLGSSMDAQNAAAAAPTTS-IAPAAADEVSALQAAQFSAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANS-SAAASPLSGIA  107
            T YQQVSA+A A++   V+ L  +A +Y ATEAAN  + +A+ L G+A
Sbjct  60   TWYQQVSAQAKAIHQTLVQNLDTNADSYGATEAANRVNTSAAALQGLA  107


>gi|254822878|ref|ZP_05227879.1| PE family protein [Mycobacterium intracellulare ATCC 13950]
Length=176

 Score =  103 bits (256),  Expect = 3e-20, Method: Compositional matrix adjust.
 Identities = 64/105 (61%), Positives = 77/105 (74%), Gaps = 2/105 (1%)

Query  1    MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
            MSF+TT+PE L AAA  LE +GS+M AQNAAAAAPTT+ + PAAADE+S LQA  F+AYG
Sbjct  1    MSFVTTRPEALMAAASMLEALGSSMDAQNAAAAAPTTS-IAPAAADEVSALQAAQFSAYG  59

Query  61   TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANS-SAAASPLS  104
              YQQVSA+A A++   V  L  SAG+Y  TE AN  + AAS LS
Sbjct  60   AWYQQVSAQAKAIHQTMVNNLDTSAGSYGETETANRVTTAASSLS  104


>gi|342861305|ref|ZP_08717953.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
 gi|342131205|gb|EGT84486.1| hypothetical protein MCOL_20576 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score =  103 bits (256),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 57/88 (65%), Positives = 71/88 (81%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IGS + AQNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+AAA++++FV TL  S+G+Y
Sbjct  60  QMYQAVSAQAAAIHEMFVNTLSTSSGSY  87


>gi|296170606|ref|ZP_06852185.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894738|gb|EFG74468.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  102 bits (253),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 57/88 (65%), Positives = 71/88 (81%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IGS + AQNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+AAA+++ FV TL +S+G+Y
Sbjct  60  QMYQAVSAQAAAIHEAFVNTLSMSSGSY  87


>gi|296165761|ref|ZP_06848275.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898886|gb|EFG78378.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  101 bits (252),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 64/99 (65%), Positives = 75/99 (76%), Gaps = 1/99 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+T QPE LAA A  L  IGSA+  QNAAA+  +TTGVIPA ADE+S L A  F A+ 
Sbjct  1   MSFVTAQPEMLAATANDLRGIGSALAVQNAAAS-RSTTGVIPAGADEVSALTAVQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99
            +YQ VSA+AAA YDLFV+TL VSAG+YAATEA N+ AA
Sbjct  60  QMYQAVSAQAAAAYDLFVRTLAVSAGSYAATEAINTIAA  98


>gi|296169912|ref|ZP_06851523.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895424|gb|EFG75127.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=297

 Score =  101 bits (252),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 52/79 (66%), Positives = 59/79 (75%), Gaps = 2/79 (2%)

Query  198  RASSIGALSVPPSWAGQANLVSSTST--LQGAGWTTAAPHGAAGTVIPGMPGLASATRSS  255
            +A+ +G LSVPPSWAG A  V  TS   LQ  GWT AAP    GTVIPGMPG+ +A R+S
Sbjct  217  QATMVGKLSVPPSWAGPATPVVGTSAAPLQTVGWTAAAPQAGTGTVIPGMPGMGAAARNS  276

Query  256  AGFGAPRYGAKPIVVPKPA  274
            AGFGAPRYG KPIV+PKPA
Sbjct  277  AGFGAPRYGVKPIVMPKPA  295


>gi|254775399|ref|ZP_05216915.1| hypothetical protein MaviaA2_12121 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|212595819|gb|ACJ35525.1| PE7 [Mycobacterium avium subsp. avium]
 gi|336457654|gb|EGO36658.1| PE family protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=99

 Score =  101 bits (251),  Expect = 1e-19, Method: Compositional matrix adjust.
 Identities = 57/88 (65%), Positives = 70/88 (80%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IGS + AQNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+AAA+++ FV TL  S+G+Y
Sbjct  60  QMYQAVSAQAAAIHEAFVNTLSTSSGSY  87


>gi|296164779|ref|ZP_06847341.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899880|gb|EFG79324.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score =  100 bits (248),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 60/92 (66%), Positives = 77/92 (84%), Gaps = 1/92 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE L+AAAG L++IGSA+ AQNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFVTTQPEALSAAAGSLQSIGSALNAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATE  92
            +YQ VSA+AAA++++FV TL +S+G+YA TE
Sbjct  60  QMYQAVSAQAAAIHEMFVNTLSMSSGSYAVTE  91


>gi|254822121|ref|ZP_05227122.1| hypothetical protein MintA_19457 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596272|gb|ACJ35565.1| PE4 [Mycobacterium intracellulare ATCC 13950]
Length=293

 Score = 99.8 bits (247),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 51/83 (62%), Positives = 62/83 (75%), Gaps = 1/83 (1%)

Query  193  AAGLSRASSIGALSVPPSWAGQANLV-SSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASA  251
            AA + +A+ +  LSVPPSWAG   +V SS + LQ  GWT AAP   AGTV+PGMPG+ + 
Sbjct  209  AAAMGQATVVNKLSVPPSWAGSTPVVGSSAAPLQTVGWTAAAPQTGAGTVVPGMPGVGAM  268

Query  252  TRSSAGFGAPRYGAKPIVVPKPA  274
             R+SAGFGAPRYG KPIV+PKPA
Sbjct  269  GRNSAGFGAPRYGVKPIVMPKPA  291


>gi|254820293|ref|ZP_05225294.1| hypothetical protein MintA_10211 [Mycobacterium intracellulare 
ATCC 13950]
 gi|212596298|gb|ACJ35567.1| PE7 [Mycobacterium intracellulare ATCC 13950]
Length=99

 Score = 99.8 bits (247),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 56/88 (64%), Positives = 69/88 (79%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IGS + AQNAAAAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGSTLSAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+A A+++ FV TL  S+G+Y
Sbjct  60  QMYQAVSAQAQAIHEAFVNTLSTSSGSY  87


>gi|212595780|gb|ACJ35522.1| PE4 [Mycobacterium avium subsp. avium]
Length=297

 Score = 99.0 bits (245),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 48/78 (62%), Positives = 60/78 (77%), Gaps = 1/78 (1%)

Query  198  RASSIGALSVPPSWAGQANLV-SSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSA  256
            +A+++  LSVPPSWAG   +V SS++ LQ  GWT AAP    GTV+PGMPG+ +  R+SA
Sbjct  218  QATTVSKLSVPPSWAGATPVVGSSSAPLQTVGWTAAAPQAGVGTVVPGMPGVGTMARNSA  277

Query  257  GFGAPRYGAKPIVVPKPA  274
            GFGAPRYG KPIV+PKPA
Sbjct  278  GFGAPRYGVKPIVMPKPA  295


>gi|240171995|ref|ZP_04750654.1| PE family protein [Mycobacterium kansasii ATCC 12478]
Length=170

 Score = 99.0 bits (245),  Expect = 7e-19, Method: Compositional matrix adjust.
 Identities = 61/99 (62%), Positives = 74/99 (75%), Gaps = 1/99 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TT+P  L AAA  L  +GS+M  QNAAAAAPTT G++P AAD+ S LQA  F AYG
Sbjct  1   MSFVTTRPAALTAAASALHIVGSSMATQNAAAAAPTT-GLVPTAADQASALQAAQFAAYG  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99
           T YQQVSA+A  ++ + V TLG SAG+YA TEAAN +AA
Sbjct  60  TWYQQVSAQAMVIHQMLVNTLGSSAGSYAKTEAANRTAA  98


>gi|254774063|ref|ZP_05215579.1| hypothetical protein MaviaA2_05238 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=287

 Score = 99.0 bits (245),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 48/78 (62%), Positives = 60/78 (77%), Gaps = 1/78 (1%)

Query  198  RASSIGALSVPPSWAGQANLV-SSTSTLQGAGWTTAAPHGAAGTVIPGMPGLASATRSSA  256
            +A+++  LSVPPSWAG   +V SS++ LQ  GWT AAP    GTV+PGMPG+ +  R+SA
Sbjct  208  QATTVSKLSVPPSWAGATPVVGSSSAPLQTVGWTAAAPQAGVGTVVPGMPGVGTMARNSA  267

Query  257  GFGAPRYGAKPIVVPKPA  274
            GFGAPRYG KPIV+PKPA
Sbjct  268  GFGAPRYGVKPIVMPKPA  285


>gi|183984754|ref|YP_001853045.1| PE-PGRS family protein [Mycobacterium marinum M]
 gi|183178080|gb|ACC43190.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=99

 Score = 98.2 bits (243),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 55/99 (56%), Positives = 73/99 (74%), Gaps = 1/99 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           M+F+T+ PE L AAA  L ++G+ M A NAAA AP T GV+PAAADE+S L A  F A+G
Sbjct  1   MAFVTSAPEALTAAALNLHSVGAGMSAGNAAAMAPIT-GVVPAAADEVSALTAAHFAAHG  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATEAANSSAA  99
            +YQ +SA+A A++++FV TL  S G+YA TEAAN+ AA
Sbjct  60  AMYQTLSAQAQAIHEMFVTTLQASGGSYAETEAANAIAA  98


>gi|296164186|ref|ZP_06846786.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900461|gb|EFG79867.1| PE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=99

 Score = 98.2 bits (243),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 55/92 (60%), Positives = 69/92 (75%), Gaps = 1/92 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           M  +T  P+ L AAAG L+ IGSAM A+NA AAAPTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MFSVTVDPQMLTAAAGTLQGIGSAMSAENAPAAAPTT-GVVPAAADEVSALTALQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAATE  92
            +YQ VSA+AAA++++F  TLGVSA +YA TE
Sbjct  60  QMYQAVSAQAAAIHEMFANTLGVSADSYAVTE  91


>gi|41407605|ref|NP_960441.1| hypothetical protein MAP1507 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41395958|gb|AAS03824.1| PE_4 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|225698451|gb|ACO07343.1| PE protein [Mycobacterium avium subsp. paratuberculosis]
Length=99

 Score = 95.9 bits (237),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 56/88 (64%), Positives = 68/88 (78%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IG  + AQNAAAAAPTT GV+PAAADE+S L A  F AY 
Sbjct  1   MSFVTTQPEALAAAAGNLQAIGWTLSAQNAAAAAPTT-GVVPAAADEVSALTAAQFAAYA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+AAA+++ FV TL  S+ +Y
Sbjct  60  QMYQAVSAQAAAIHEAFVNTLSTSSVSY  87


>gi|342861297|ref|ZP_08717945.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
 gi|342131197|gb|EGT84478.1| hypothetical protein MCOL_20536 [Mycobacterium colombiense CECT 
3035]
Length=99

 Score = 94.0 bits (232),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 52/90 (58%), Positives = 67/90 (75%), Gaps = 1/90 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           M+F+T QPE L  AA +L  IGSA+ AQN+A AAP T GV PAAADE+S+L A  F  +G
Sbjct  1   MNFVTAQPESLDIAASRLHEIGSALTAQNSATAAPMT-GVAPAAADEVSLLTAAQFARHG  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTYAA  90
             +Q +SA+AAA+++ FV TL VSAG+YAA
Sbjct  60  QTFQALSAQAAAIHENFVTTLQVSAGSYAA  89


>gi|333989806|ref|YP_004522420.1| PE family protein PE19 [Mycobacterium sp. JDM601]
 gi|333485774|gb|AEF35166.1| PE family protein PE19 [Mycobacterium sp. JDM601]
Length=99

 Score = 93.6 bits (231),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 50/88 (57%), Positives = 67/88 (77%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+ TQPE LA+AA +L  IGS + AQN AAA PTT  + PAAADE+S L A LF+A+ 
Sbjct  1   MSFVNTQPEALASAASELRGIGSVVAAQNMAAAGPTTV-LPPAAADEVSALTAALFSAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
             YQ+VSA+AAA+++ FV+TL +S+ +Y
Sbjct  60  QAYQEVSAQAAAIHEAFVRTLALSSESY  87


>gi|15841256|ref|NP_336293.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792976|ref|NP_855469.1| PE family protein [Mycobacterium bovis AF2122/97]
 gi|57116910|ref|YP_177834.1| PE family protein [Mycobacterium tuberculosis H37Rv]
 60 more sequence titles
 
gi|121637689|ref|YP_977912.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661595|ref|YP_001283118.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148823003|ref|YP_001287757.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|167967963|ref|ZP_02550240.1| hypothetical protein MtubH3_07958 [Mycobacterium tuberculosis 
H37Ra]
 gi|224990173|ref|YP_002644860.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799172|ref|YP_003032173.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|254231976|ref|ZP_04925303.1| PE family protein [Mycobacterium tuberculosis C]
 gi|289443255|ref|ZP_06432999.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289447402|ref|ZP_06437146.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554440|ref|ZP_06443650.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289569853|ref|ZP_06450080.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289574464|ref|ZP_06454691.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289745780|ref|ZP_06505158.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289750355|ref|ZP_06509733.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289753883|ref|ZP_06513261.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289757890|ref|ZP_06517268.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|289761938|ref|ZP_06521316.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|294996699|ref|ZP_06802390.1| PE family protein [Mycobacterium tuberculosis 210]
 gi|297634346|ref|ZP_06952126.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|297731335|ref|ZP_06960453.1| PE family protein [Mycobacterium tuberculosis KZN R506]
 gi|298525284|ref|ZP_07012693.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306776001|ref|ZP_07414338.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|306972114|ref|ZP_07484775.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|307079823|ref|ZP_07488993.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|307084400|ref|ZP_07493513.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|313658667|ref|ZP_07815547.1| PE family protein [Mycobacterium tuberculosis KZN V2475]
 gi|339631842|ref|YP_004723484.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340626800|ref|YP_004745252.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|7478594|pir||F70929 probable PE protein - Mycobacterium tuberculosis (strain H37RV)
 gi|13881483|gb|AAK46107.1| PE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31618567|emb|CAD94519.1| PE FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
 gi|38684059|emb|CAE55421.1| PE FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121493336|emb|CAL71807.1| PE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601035|gb|EAY60045.1| PE family protein [Mycobacterium tuberculosis C]
 gi|148505747|gb|ABQ73556.1| PE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148721530|gb|ABR06155.1| PE family protein [Mycobacterium tuberculosis F11]
 gi|224773286|dbj|BAH26092.1| PE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320675|gb|ACT25278.1| PE family protein [Mycobacterium tuberculosis KZN 1435]
 gi|289416174|gb|EFD13414.1| PE family protein [Mycobacterium tuberculosis T46]
 gi|289420360|gb|EFD17561.1| PE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439072|gb|EFD21565.1| PE family protein [Mycobacterium tuberculosis KZN 605]
 gi|289538895|gb|EFD43473.1| PE family protein [Mycobacterium tuberculosis K85]
 gi|289543607|gb|EFD47255.1| PE family protein [Mycobacterium tuberculosis T17]
 gi|289686308|gb|EFD53796.1| PE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289690942|gb|EFD58371.1| PE family protein [Mycobacterium tuberculosis T92]
 gi|289694470|gb|EFD61899.1| PE family protein [Mycobacterium tuberculosis EAS054]
 gi|289709444|gb|EFD73460.1| PE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289713454|gb|EFD77466.1| PE family protein [Mycobacterium tuberculosis T85]
 gi|298495078|gb|EFI30372.1| PE family protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308215541|gb|EFO74940.1| PE family protein [Mycobacterium tuberculosis SUMu001]
 gi|308358416|gb|EFP47267.1| PE family protein [Mycobacterium tuberculosis SUMu010]
 gi|308362343|gb|EFP51194.1| PE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308365997|gb|EFP54848.1| PE family protein [Mycobacterium tuberculosis SUMu012]
 gi|323719697|gb|EGB28817.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
 gi|326903394|gb|EGE50327.1| PE family protein [Mycobacterium tuberculosis W-148]
 gi|328458927|gb|AEB04350.1| PE family protein [Mycobacterium tuberculosis KZN 4207]
 gi|339331198|emb|CCC26880.1| PE family protein [Mycobacterium africanum GM041182]
 gi|340004990|emb|CCC44138.1| PE family protein [Mycobacterium canettii CIPT 140010059]
 gi|341601716|emb|CCC64389.1| PE family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344219610|gb|AEN00241.1| PE family protein [Mycobacterium tuberculosis CTRI-2]
Length=99

 Score = 92.8 bits (229),  Expect = 4e-17, Method: Compositional matrix adjust.
 Identities = 57/88 (65%), Positives = 72/88 (82%), Gaps = 1/88 (1%)

Query  1   MSFLTTQPEELAAAAGKLETIGSAMVAQNAAAAAPTTTGVIPAAADEISVLQAPLFTAYG  60
           MSF+TTQPE LAAAAG L+ IGSA+ AQNAAAA PTT GV+PAAADE+S L A  F A+ 
Sbjct  1   MSFVTTQPEALAAAAGSLQGIGSALNAQNAAAATPTT-GVVPAAADEVSALTAAQFAAHA  59

Query  61  TLYQQVSAEAAAVYDLFVKTLGVSAGTY  88
            +YQ VSA+AAA++++FV TL +S+G+Y
Sbjct  60  QIYQAVSAQAAAIHEMFVNTLQMSSGSY  87



Lambda     K      H
   0.309    0.124    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 432410969436


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40