BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2772c
Length=157
Score E
Sequences producing significant alignments: (Bits) Value
gi|297635381|ref|ZP_06953161.1| hypothetical protein MtubK4_1472... 297 4e-79
gi|15609909|ref|NP_217288.1| transmembrane protein [Mycobacteriu... 297 4e-79
gi|183981952|ref|YP_001850243.1| hypothetical protein MMAR_1939 ... 234 3e-60
gi|254819259|ref|ZP_05224260.1| TPR repeat-containing protein [M... 232 1e-59
gi|118617717|ref|YP_906049.1| hypothetical protein MUL_2165 [Myc... 231 3e-59
gi|41408975|ref|NP_961811.1| hypothetical protein MAP2877c [Myco... 228 2e-58
gi|15827804|ref|NP_302067.1| hypothetical protein ML1526 [Mycoba... 228 3e-58
gi|118464804|ref|YP_882838.1| TPR repeat-containing protein [Myc... 227 5e-58
gi|296171658|ref|ZP_06852872.1| tetratricopeptide TPR_2 [Mycobac... 226 7e-58
gi|342858363|ref|ZP_08715018.1| TPR repeat-containing protein [M... 221 4e-56
gi|240173297|ref|ZP_04751955.1| TPR repeat-containing protein [M... 211 2e-53
gi|254776097|ref|ZP_05217613.1| hypothetical protein MaviaA2_156... 211 4e-53
gi|145224592|ref|YP_001135270.1| TPR repeat-containing protein [... 206 1e-51
gi|333991165|ref|YP_004523779.1| transmembrane protein [Mycobact... 202 1e-50
gi|120403366|ref|YP_953195.1| hypothetical protein Mvan_2375 [My... 201 3e-50
gi|118473113|ref|YP_887002.1| hypothetical protein MSMEG_2665 [M... 196 1e-48
gi|169630177|ref|YP_001703826.1| hypothetical protein MAB_3095c ... 182 2e-44
gi|126434678|ref|YP_001070369.1| TPR repeat-containing protein [... 176 7e-43
gi|108799075|ref|YP_639272.1| tetratricopeptide TPR_2 [Mycobacte... 176 1e-42
gi|111023698|ref|YP_706670.1| hypothetical protein RHA1_ro06740 ... 162 2e-38
gi|226366136|ref|YP_002783919.1| hypothetical protein ROP_67270 ... 158 3e-37
gi|229490910|ref|ZP_04384745.1| tetratricopeptide TPR_2 [Rhodoco... 154 3e-36
gi|325672774|ref|ZP_08152470.1| TPR repeat-containing protein [R... 153 1e-35
gi|226306178|ref|YP_002766138.1| hypothetical protein RER_26910 ... 152 1e-35
gi|312139346|ref|YP_004006682.1| integral membrane protein [Rhod... 152 2e-35
gi|262202106|ref|YP_003273314.1| hypothetical protein Gbro_2173 ... 151 4e-35
gi|333919310|ref|YP_004492891.1| hypothetical protein AS9A_1642 ... 150 4e-35
gi|54025850|ref|YP_120092.1| hypothetical protein nfa38800 [Noca... 150 6e-35
gi|343927035|ref|ZP_08766523.1| hypothetical protein GOALK_077_0... 149 1e-34
gi|326382962|ref|ZP_08204652.1| hypothetical protein SCNU_08483 ... 143 8e-33
gi|258652438|ref|YP_003201594.1| hypothetical protein Namu_2228 ... 135 2e-30
gi|302528522|ref|ZP_07280864.1| tetratricopeptide TPR_2 repeat p... 134 4e-30
gi|257055507|ref|YP_003133339.1| hypothetical protein Svir_14720... 132 2e-29
gi|300788160|ref|YP_003768451.1| hypothetical protein AMED_6315 ... 131 3e-29
gi|296139471|ref|YP_003646714.1| hypothetical protein Tpau_1757 ... 125 3e-27
gi|256379817|ref|YP_003103477.1| hypothetical protein Amir_5820 ... 124 6e-27
gi|323356770|ref|YP_004223166.1| hypothetical protein MTES_0322 ... 115 2e-24
gi|134102358|ref|YP_001108019.1| TPR repeat-containing protein [... 108 2e-22
gi|319949594|ref|ZP_08023638.1| hypothetical protein ES5_09063 [... 107 6e-22
gi|170781601|ref|YP_001709933.1| hypothetical protein CMS_1195 [... 105 2e-21
gi|325962834|ref|YP_004240740.1| hypothetical protein Asphe3_143... 105 3e-21
gi|220912220|ref|YP_002487529.1| tetratricopeptide TPR_2 repeat-... 104 5e-21
gi|116670010|ref|YP_830943.1| TPR repeat-containing protein [Art... 103 6e-21
gi|302558055|ref|ZP_07310397.1| tetratricopeptide repeat domain-... 102 2e-20
gi|295395385|ref|ZP_06805584.1| TPR repeat-containing protein [B... 102 2e-20
gi|148273220|ref|YP_001222781.1| hypothetical protein CMM_2039 [... 102 2e-20
gi|297191694|ref|ZP_06909092.1| conserved hypothetical protein [... 101 4e-20
gi|290957006|ref|YP_003488188.1| hypothetical protein SCAB_25221... 101 4e-20
gi|239991187|ref|ZP_04711851.1| hypothetical protein SrosN1_2803... 101 4e-20
gi|284030896|ref|YP_003380827.1| hypothetical protein Kfla_2963 ... 100 6e-20
>gi|297635381|ref|ZP_06953161.1| hypothetical protein MtubK4_14727 [Mycobacterium tuberculosis
KZN 4207]
gi|323718619|gb|EGB27783.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=158
Score = 297 bits (760), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI 60
MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI
Sbjct 2 MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI 61
Query 61 ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR 120
ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR
Sbjct 62 ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR 121
Query 121 RWYRLARAYDYAGDRRRAREAMKTALQLEGRARPGAR 157
RWYRLARAYDYAGDRRRAREAMKTALQLEGRARPGAR
Sbjct 122 RWYRLARAYDYAGDRRRAREAMKTALQLEGRARPGAR 158
>gi|15609909|ref|NP_217288.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15842310|ref|NP_337347.1| hypothetical protein MT2842 [Mycobacterium tuberculosis CDC1551]
gi|31793947|ref|NP_856440.1| transmembrane protein [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=157
Score = 297 bits (760), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI 60
MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI
Sbjct 1 MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI 60
Query 61 ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR 120
ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR
Sbjct 61 ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR 120
Query 121 RWYRLARAYDYAGDRRRAREAMKTALQLEGRARPGAR 157
RWYRLARAYDYAGDRRRAREAMKTALQLEGRARPGAR
Sbjct 121 RWYRLARAYDYAGDRRRAREAMKTALQLEGRARPGAR 157
>gi|183981952|ref|YP_001850243.1| hypothetical protein MMAR_1939 [Mycobacterium marinum M]
gi|183175278|gb|ACC40388.1| conserved hypothetical secreted protein [Mycobacterium marinum
M]
Length=154
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/150 (78%), Positives = 136/150 (91%), Gaps = 0/150 (0%)
Query 2 TRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIA 61
T RT+ VQ++IAFMCVA+VAY VMLGR+A AMIGSGRAAA GLGLALLI+P+IGLWAM+A
Sbjct 4 TVRTVRVQVLIAFMCVALVAYFVMLGRLAFAMIGSGRAAAVGLGLALLIMPLIGLWAMVA 63
Query 62 TLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRR 121
TLRAGF +Q+LARLIAE+GL++DA LPRRASGRI+RDAADALF +R ELE+D +WRR
Sbjct 64 TLRAGFTHQKLARLIAEEGLELDADGLPRRASGRIERDAADALFDTMRAELEEDPQNWRR 123
Query 122 WYRLARAYDYAGDRRRAREAMKTALQLEGR 151
WYRLARAYDYAGDRRRAREAMKTA++L+ R
Sbjct 124 WYRLARAYDYAGDRRRAREAMKTAVELQAR 153
>gi|254819259|ref|ZP_05224260.1| TPR repeat-containing protein [Mycobacterium intracellulare ATCC
13950]
Length=152
Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/147 (78%), Positives = 131/147 (90%), Gaps = 0/147 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
+ L QL++AFMCVA++ Y +LGRVAVAMI SGRAAA GLGLA+L++PVIGLWAM+ATL
Sbjct 3 KALRTQLLVAFMCVALLVYFALLGRVAVAMIASGRAAAVGLGLAVLVMPVIGLWAMVATL 62
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
RAGFA+QRLARLIA DG+++D S LPRR SGRIQRDAADALFA VRTE+ED DDWRRWY
Sbjct 63 RAGFAHQRLARLIAADGMELDTSDLPRRPSGRIQRDAADALFATVRTEVEDHPDDWRRWY 122
Query 124 RLARAYDYAGDRRRAREAMKTALQLEG 150
RLARAYDYAGDRRRAREAMKTA+ L+G
Sbjct 123 RLARAYDYAGDRRRAREAMKTAVNLQG 149
>gi|118617717|ref|YP_906049.1| hypothetical protein MUL_2165 [Mycobacterium ulcerans Agy99]
gi|118569827|gb|ABL04578.1| conserved hypothetical secreted protein [Mycobacterium ulcerans
Agy99]
Length=154
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/150 (76%), Positives = 136/150 (91%), Gaps = 0/150 (0%)
Query 2 TRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIA 61
T RT+ VQ++IAFMCVA++AY VMLGR+A AMIGSGRAAA GLGLALLI+P+IGLWAM+A
Sbjct 4 TVRTVRVQVLIAFMCVALLAYFVMLGRLAFAMIGSGRAAAVGLGLALLIMPLIGLWAMVA 63
Query 62 TLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRR 121
TLRAGF +Q+LARLIAE+GL++DA LPRRASGRI+RDAADALF +R ELE+D +WRR
Sbjct 64 TLRAGFTHQKLARLIAEEGLELDADGLPRRASGRIERDAADALFDTMRAELEEDPQNWRR 123
Query 122 WYRLARAYDYAGDRRRAREAMKTALQLEGR 151
WYRLARAYDYAGDRRRAREAM+TA++L+ R
Sbjct 124 WYRLARAYDYAGDRRRAREAMRTAVELQAR 153
>gi|41408975|ref|NP_961811.1| hypothetical protein MAP2877c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397334|gb|AAS05194.1| hypothetical protein MAP_2877c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458968|gb|EGO37922.1| hypothetical protein MAPs_07970 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=151
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/149 (75%), Positives = 132/149 (89%), Gaps = 0/149 (0%)
Query 3 RRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIAT 62
+ L +QL++AF+CVA+V Y +LGRVA+AMI SGRAAA GLG+A+LI+P +GLWAMIAT
Sbjct 2 NKALRIQLLVAFLCVALVVYFALLGRVAIAMIASGRAAAVGLGVAVLIMPALGLWAMIAT 61
Query 63 LRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRW 122
LRAGFA+QRLARLIA DG+++D SALPRR SGRI+RDAADALFA VRTE+E+ DDWRRW
Sbjct 62 LRAGFAHQRLARLIAADGMELDTSALPRRPSGRIRRDAADALFATVRTEVENHPDDWRRW 121
Query 123 YRLARAYDYAGDRRRAREAMKTALQLEGR 151
YRLARAYDYAGDRRRAREAMKTA+ L+G
Sbjct 122 YRLARAYDYAGDRRRAREAMKTAVDLQGH 150
>gi|15827804|ref|NP_302067.1| hypothetical protein ML1526 [Mycobacterium leprae TN]
gi|221230281|ref|YP_002503697.1| hypothetical protein MLBr_01526 [Mycobacterium leprae Br4923]
gi|13093356|emb|CAC30477.1| conserved membrane protein [Mycobacterium leprae]
gi|219933388|emb|CAR71621.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=160
Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/154 (77%), Positives = 135/154 (88%), Gaps = 3/154 (1%)
Query 1 MTRRTLYV---QLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLW 57
MT+R+LY+ QL+IA +C AM+AYLV+LGR+AVAMIGSG+AAA LGLALLI+PVIGLW
Sbjct 6 MTKRSLYILYIQLLIAALCFAMLAYLVLLGRMAVAMIGSGQAAAVSLGLALLIMPVIGLW 65
Query 58 AMIATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDAD 117
AMIATLRAGFA+Q+LARLIA DG+++D S L RR SGRIQRDAADALFA VR EL D D
Sbjct 66 AMIATLRAGFAHQKLARLIAADGMELDTSVLLRRPSGRIQRDAADALFATVRAELAGDPD 125
Query 118 DWRRWYRLARAYDYAGDRRRAREAMKTALQLEGR 151
+WR WYRLARAYDYAGDRRRAREAMKTAL+L GR
Sbjct 126 NWRCWYRLARAYDYAGDRRRAREAMKTALELHGR 159
>gi|118464804|ref|YP_882838.1| TPR repeat-containing protein [Mycobacterium avium 104]
gi|118166091|gb|ABK66988.1| tetratricopeptide repeat domain protein [Mycobacterium avium
104]
Length=151
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/149 (74%), Positives = 132/149 (89%), Gaps = 0/149 (0%)
Query 3 RRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIAT 62
+ L +QL++AF+CVA++ Y +LGRVA+AMI SGRAAA GLG+A+LI+P +GLWAMIAT
Sbjct 2 NKALRIQLLVAFLCVALLVYFALLGRVAIAMIASGRAAAVGLGVAVLIMPALGLWAMIAT 61
Query 63 LRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRW 122
LRAGFA+QRLARLIA DG+++D SALPRR SGRI+RDAADALFA VRTE+E+ DDWRRW
Sbjct 62 LRAGFAHQRLARLIAADGMELDTSALPRRPSGRIRRDAADALFATVRTEVENHPDDWRRW 121
Query 123 YRLARAYDYAGDRRRAREAMKTALQLEGR 151
YRLARAYDYAGDRRRAREAMKTA+ L+G
Sbjct 122 YRLARAYDYAGDRRRAREAMKTAVDLQGH 150
>gi|296171658|ref|ZP_06852872.1| tetratricopeptide TPR_2 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894019|gb|EFG73782.1| tetratricopeptide TPR_2 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=151
Score = 226 bits (577), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/146 (77%), Positives = 131/146 (90%), Gaps = 0/146 (0%)
Query 6 LYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRA 65
L QL+IA +CVAM+ Y V+LGR+A+AMI SGRAAA GLGLA+LI+P+IGLWAM+ATLR
Sbjct 5 LRTQLLIALLCVAMLGYFVLLGRMALAMIASGRAAAVGLGLAVLIMPLIGLWAMVATLRF 64
Query 66 GFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRL 125
GFA+Q+LA LIA DG+++D S LPRRASGRI+RDAADALFA VRTE+ED DDWRRWYRL
Sbjct 65 GFAHQKLANLIAADGMELDTSDLPRRASGRIERDAADALFATVRTEVEDHPDDWRRWYRL 124
Query 126 ARAYDYAGDRRRAREAMKTALQLEGR 151
ARAYDYAGDRRRAREAMKTAL+L+GR
Sbjct 125 ARAYDYAGDRRRAREAMKTALELQGR 150
>gi|342858363|ref|ZP_08715018.1| TPR repeat-containing protein [Mycobacterium colombiense CECT
3035]
gi|342134067|gb|EGT87247.1| TPR repeat-containing protein [Mycobacterium colombiense CECT
3035]
Length=155
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/146 (77%), Positives = 127/146 (87%), Gaps = 0/146 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
+ L QL++AFMCVA++ Y V+LGRVAVAMIGSGRAAA GLG A+LILPVIGLWAMIATL
Sbjct 3 KALRTQLLVAFMCVALLVYFVLLGRVAVAMIGSGRAAAIGLGCAVLILPVIGLWAMIATL 62
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
RAG A+Q+LA LIA DG+++D SALPRR SGRI+RDAAD LFA VR E+ED DDWRRWY
Sbjct 63 RAGLAHQKLAGLIAADGMELDTSALPRRPSGRIRRDAADELFATVRAEVEDHPDDWRRWY 122
Query 124 RLARAYDYAGDRRRAREAMKTALQLE 149
RLARAYDYAGDRRRAREAM+TA+ L
Sbjct 123 RLARAYDYAGDRRRAREAMRTAVDLH 148
>gi|240173297|ref|ZP_04751955.1| TPR repeat-containing protein [Mycobacterium kansasii ATCC 12478]
Length=189
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/152 (76%), Positives = 133/152 (88%), Gaps = 0/152 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
RT+ +QL+IAF+C AM+ Y V+LGR+AVA+IGSGRAAA GLGLALL++P IGLWAMIATL
Sbjct 6 RTMRIQLLIAFLCAAMLVYFVLLGRIAVALIGSGRAAAIGLGLALLLMPAIGLWAMIATL 65
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
RAGFA+Q+LARLIAEDG+++D S+LPRR SGRI+R AADALF VR EL+DD DDWRRWY
Sbjct 66 RAGFAHQKLARLIAEDGMELDVSSLPRRPSGRIERPAADALFDIVRAELQDDPDDWRRWY 125
Query 124 RLARAYDYAGDRRRAREAMKTALQLEGRARPG 155
RLAR YDYAGDRRRAREAMKTAL LE R G
Sbjct 126 RLARGYDYAGDRRRAREAMKTALSLERSRRHG 157
>gi|254776097|ref|ZP_05217613.1| hypothetical protein MaviaA2_15695 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=151
Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/149 (74%), Positives = 132/149 (89%), Gaps = 0/149 (0%)
Query 3 RRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIAT 62
+ L +QL++AF+CVA++ Y +LGRVA+AMI SGRAAA GLG+A+LI+P +GLWAMIAT
Sbjct 2 NKALRIQLLVAFLCVALLVYFALLGRVAIAMIASGRAAAVGLGVAVLIMPALGLWAMIAT 61
Query 63 LRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRW 122
LRAGFA+QRLARLIA DG+++D SALPRR SGRI+RDAADALFA VRTE+E+ DDWRRW
Sbjct 62 LRAGFAHQRLARLIAADGMELDTSALPRRRSGRIRRDAADALFATVRTEVENHPDDWRRW 121
Query 123 YRLARAYDYAGDRRRAREAMKTALQLEGR 151
YRLARAYDYAGDRRRAREAMKTA+ L+G
Sbjct 122 YRLARAYDYAGDRRRAREAMKTAVDLQGH 150
>gi|145224592|ref|YP_001135270.1| TPR repeat-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315444923|ref|YP_004077802.1| hypothetical protein Mspyr1_33560 [Mycobacterium sp. Spyr1]
gi|145217078|gb|ABP46482.1| Tetratricopeptide TPR_2 repeat protein [Mycobacterium gilvum
PYR-GCK]
gi|315263226|gb|ADT99967.1| hypothetical protein Mspyr1_33560 [Mycobacterium sp. Spyr1]
Length=155
Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/150 (67%), Positives = 121/150 (81%), Gaps = 0/150 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
R L +QL+I FMCVA+V Y V+LGR A+ +IGSG AA GLGLA+LI+P IG W ++ATL
Sbjct 6 RALRIQLLIGFMCVALVVYFVLLGRTALILIGSGEAAPVGLGLAILIMPAIGAWVLVATL 65
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
+AG A+QRLAR E G+D+D LPRRASGRI+RDAADALFA VRTE+E+D D+W RWY
Sbjct 66 KAGLAHQRLARKARESGMDLDVDDLPRRASGRIERDAADALFATVRTEVENDPDNWVRWY 125
Query 124 RLARAYDYAGDRRRAREAMKTALQLEGRAR 153
RLARAYDYAGDR RARE MK A+Q+E A+
Sbjct 126 RLARAYDYAGDRTRARETMKKAVQMEESAQ 155
>gi|333991165|ref|YP_004523779.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333487133|gb|AEF36525.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=154
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/142 (71%), Positives = 121/142 (86%), Gaps = 0/142 (0%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
+ +IAFMC+A++ YLV LGR AV +I SG A A G+GLALLI+P IGLWAMIATLR GF
Sbjct 10 TKALIAFMCLALLMYLVFLGRTAVLLIASGSAPAIGMGLALLIMPFIGLWAMIATLRDGF 69
Query 68 AYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLAR 127
+QRL+RLIA DG+++DA ALPRR SGRI+RDAADALF VR EL+ + DDWRRWYRLAR
Sbjct 70 THQRLSRLIAADGMELDAGALPRRPSGRIERDAADALFRTVRDELDAEPDDWRRWYRLAR 129
Query 128 AYDYAGDRRRAREAMKTALQLE 149
AY++AGDRRRAREAMKTA++L+
Sbjct 130 AYEFAGDRRRAREAMKTAVRLQ 151
>gi|120403366|ref|YP_953195.1| hypothetical protein Mvan_2375 [Mycobacterium vanbaalenii PYR-1]
gi|119956184|gb|ABM13189.1| tetratricopeptide TPR_2 [Mycobacterium vanbaalenii PYR-1]
Length=155
Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/150 (68%), Positives = 119/150 (80%), Gaps = 0/150 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
R L +QL+I FMCVA+V Y V+LGR A+ +I SG A GLGLA+LILPVIG+W M+ATL
Sbjct 6 RALRIQLLIGFMCVALVVYFVLLGRAALMLITSGEPAPIGLGLAILILPVIGVWVMVATL 65
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
+AG A+QRLARL E G+++D S LPRR SGRI+RDAADALFA VR ELE D D+W RWY
Sbjct 66 KAGLAHQRLARLAREQGMELDVSGLPRRPSGRIERDAADALFATVRDELEADPDNWLRWY 125
Query 124 RLARAYDYAGDRRRAREAMKTALQLEGRAR 153
RLARAYDYAGDR RARE MK A+ L+ AR
Sbjct 126 RLARAYDYAGDRGRARETMKKAVLLQEAAR 155
>gi|118473113|ref|YP_887002.1| hypothetical protein MSMEG_2665 [Mycobacterium smegmatis str.
MC2 155]
gi|118174400|gb|ABK75296.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=155
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/149 (67%), Positives = 118/149 (80%), Gaps = 1/149 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
R+L +QL+I FMCVA++ Y VMLGR A I SG AAA LG+ALL PVIG+W +IATL
Sbjct 6 RSLRIQLLIGFMCVALIVYFVMLGRAAFVFITSGEAAAVALGIALLAFPVIGVWVLIATL 65
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
RAG A+QRL RL E G+D+D S LPRR SGRI+RDAADALF V+ ELE D D+W RWY
Sbjct 66 RAGLAHQRLGRLADEQGMDLDVSDLPRRPSGRIERDAADALFVQVKAELEADPDNWVRWY 125
Query 124 RLARAYDYAGDRRRAREAMKTALQL-EGR 151
RLARAYDYAGDR RAR+AM+TA+++ EGR
Sbjct 126 RLARAYDYAGDRSRARDAMRTAVRMQEGR 154
>gi|169630177|ref|YP_001703826.1| hypothetical protein MAB_3095c [Mycobacterium abscessus ATCC
19977]
gi|169242144|emb|CAM63172.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=153
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/142 (62%), Positives = 116/142 (82%), Gaps = 0/142 (0%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
V+++IAFMCVAMV Y ++LG++ +A++ +G+AAA G+G+ +LILP IGLWAMIATLRAGF
Sbjct 7 VKILIAFMCVAMVVYFLILGKMGIALVQTGKAAAIGMGVGVLILPFIGLWAMIATLRAGF 66
Query 68 AYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLAR 127
A+QRLA L A+ G ++D SAL SGR+ R+ ADALFA V+ E+E + DDW WYRLAR
Sbjct 67 AHQRLAALAAQQGRELDVSALRTTPSGRVNREDADALFATVKAEVEAEPDDWVGWYRLAR 126
Query 128 AYDYAGDRRRAREAMKTALQLE 149
AYDYAGDR RAR+ M+TA+Q++
Sbjct 127 AYDYAGDRGRARDTMRTAVQMQ 148
>gi|126434678|ref|YP_001070369.1| TPR repeat-containing protein [Mycobacterium sp. JLS]
gi|126234478|gb|ABN97878.1| Tetratricopeptide TPR_2 repeat protein [Mycobacterium sp. JLS]
Length=154
Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/150 (63%), Positives = 116/150 (78%), Gaps = 0/150 (0%)
Query 3 RRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIAT 62
RR L Q++I MCVA+V Y ++LGR+A A I +G AA GLG+ALL LP+IG+W M++T
Sbjct 5 RRALRTQVLIGLMCVALVVYFLLLGRIAFAFIETGELAAVGLGVALLALPLIGVWVMVST 64
Query 63 LRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRW 122
L+AGFA+QRL RL E +D+D S LPRR SGRI+RDAADALF VR EL +D D+W RW
Sbjct 65 LQAGFAHQRLVRLAREQNMDLDVSDLPRRPSGRIERDAADALFELVRAELHEDPDNWIRW 124
Query 123 YRLARAYDYAGDRRRAREAMKTALQLEGRA 152
YRLARAYDYAGDR RAR AM+ A++LE A
Sbjct 125 YRLARAYDYAGDRGRARAAMRRAVELEESA 154
>gi|108799075|ref|YP_639272.1| tetratricopeptide TPR_2 [Mycobacterium sp. MCS]
gi|119868190|ref|YP_938142.1| TPR repeat-containing protein [Mycobacterium sp. KMS]
gi|108769494|gb|ABG08216.1| Tetratricopeptide TPR_2 [Mycobacterium sp. MCS]
gi|119694279|gb|ABL91352.1| Tetratricopeptide TPR_2 repeat protein [Mycobacterium sp. KMS]
Length=154
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/150 (63%), Positives = 116/150 (78%), Gaps = 0/150 (0%)
Query 3 RRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIAT 62
RR L Q++I MCVA+V Y ++LGR+A A I +G AA GLG+ALL LP+IG+W M++T
Sbjct 5 RRALRTQVLIGLMCVALVVYFLLLGRIAFAFIKTGELAAVGLGVALLALPLIGVWVMVST 64
Query 63 LRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRW 122
L+AGFA+QRL RL E +D+D S LPRR SGRI+RDAADALF VR EL +D D+W RW
Sbjct 65 LQAGFAHQRLVRLAREQDMDLDVSDLPRRPSGRIERDAADALFELVRAELHEDPDNWIRW 124
Query 123 YRLARAYDYAGDRRRAREAMKTALQLEGRA 152
YRLARAYDYAGDR RAR AM+ A++LE A
Sbjct 125 YRLARAYDYAGDRGRARAAMRRAVELEESA 154
>gi|111023698|ref|YP_706670.1| hypothetical protein RHA1_ro06740 [Rhodococcus jostii RHA1]
gi|110823228|gb|ABG98512.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=159
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/146 (57%), Positives = 105/146 (72%), Gaps = 0/146 (0%)
Query 10 LIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAY 69
+ I + A+ Y V+LG+ + +I G AAA GLG+ +LILP +G W + ATLRAGF +
Sbjct 10 VTIGLLVAALAFYFVLLGQRGIELIQDGGAAAIGLGVGVLILPFLGAWIVYATLRAGFQH 69
Query 70 QRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAY 129
Q L+R IA++GL++D S LP+R SGRI RDAADALF V++E E D D+WR YRLARAY
Sbjct 70 QHLSRRIADEGLELDVSDLPKRPSGRIDRDAADALFHQVKSEWEADPDNWRNSYRLARAY 129
Query 130 DYAGDRRRAREAMKTALQLEGRARPG 155
DYAGDR RARE MK A++LE R G
Sbjct 130 DYAGDRGRARETMKRAVELERVEREG 155
>gi|226366136|ref|YP_002783919.1| hypothetical protein ROP_67270 [Rhodococcus opacus B4]
gi|226244626|dbj|BAH54974.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=159
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/140 (57%), Positives = 103/140 (74%), Gaps = 0/140 (0%)
Query 10 LIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAY 69
+ I + A+ Y V+LG+ +A+I G AAA GLG+ +LILP +G W + ATLRAGF +
Sbjct 10 VTIGLLVAALAFYFVLLGQRGIALIQDGGAAAIGLGVGVLILPFLGAWIVYATLRAGFQH 69
Query 70 QRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAY 129
Q L+R IA++ L++D + LP+R SGRI RDAADALF V++E E D D+WR YRLARAY
Sbjct 70 QHLSRRIADERLELDVTDLPKRPSGRIDRDAADALFQQVKSEWEADPDNWRNSYRLARAY 129
Query 130 DYAGDRRRAREAMKTALQLE 149
DYAGDR RARE MK A++LE
Sbjct 130 DYAGDRGRARETMKRAVELE 149
>gi|229490910|ref|ZP_04384745.1| tetratricopeptide TPR_2 [Rhodococcus erythropolis SK121]
gi|229322300|gb|EEN88086.1| tetratricopeptide TPR_2 [Rhodococcus erythropolis SK121]
Length=154
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/153 (55%), Positives = 115/153 (76%), Gaps = 1/153 (0%)
Query 1 MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI 60
M + T V LI+A +C+A+ Y V+LG+ + +I G AA GLG+ +LILP +GLW +I
Sbjct 1 MNKTTRTVALIVA-ICIALAVYFVLLGQRGIQLIQDGGGAAIGLGIGVLILPFLGLWLVI 59
Query 61 ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR 120
ATLRAGF +QRLA+ I ++GL +DASALP+ SGRI+R AAD LFA ++ + E D D+W+
Sbjct 60 ATLRAGFTHQRLAQQIHDEGLAVDASALPKLPSGRIERAAADELFAQIKVDWEADPDNWK 119
Query 121 RWYRLARAYDYAGDRRRAREAMKTALQLEGRAR 153
+ +RLARAYDYAGDR RARE M+ A++LE R+R
Sbjct 120 QNFRLARAYDYAGDRSRARETMRRAVELERRSR 152
>gi|325672774|ref|ZP_08152470.1| TPR repeat-containing protein [Rhodococcus equi ATCC 33707]
gi|325556651|gb|EGD26317.1| TPR repeat-containing protein [Rhodococcus equi ATCC 33707]
Length=155
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/132 (57%), Positives = 98/132 (75%), Gaps = 0/132 (0%)
Query 22 YLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLARLIAEDGL 81
Y V+LG+ +A+I GRA LG+A+L+LP +G+W ++AT+R+G A+Q LAR + ++GL
Sbjct 22 YFVLLGQRGIALIQDGRAVPVVLGIAVLVLPFLGVWMVVATIRSGLAHQHLARRMHDEGL 81
Query 82 DIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAGDRRRAREA 141
++D LPRR SGRI+RDAAD LFA V+ E E D D+WR YRLARAYDYAGDR RARE
Sbjct 82 ELDVDDLPRRPSGRIERDAADELFAQVKQEWEADPDNWRNSYRLARAYDYAGDRGRARET 141
Query 142 MKTALQLEGRAR 153
M+ A+ LE R
Sbjct 142 MRRAVALEKHER 153
>gi|226306178|ref|YP_002766138.1| hypothetical protein RER_26910 [Rhodococcus erythropolis PR4]
gi|226185295|dbj|BAH33399.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=154
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/153 (54%), Positives = 115/153 (76%), Gaps = 1/153 (0%)
Query 1 MTRRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMI 60
M + T + LI+A +C+A+ Y V+LG+ + +I G AA GLG+ +LILP +GLW +I
Sbjct 1 MNKTTRTLALIVA-ICIALAVYFVLLGQRGIQLIQDGGGAAIGLGIGVLILPFLGLWLVI 59
Query 61 ATLRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWR 120
ATLRAGF +QRLA+ I ++GL +DAS+LP+ SGRI+R AAD LFA ++ + E D D+W+
Sbjct 60 ATLRAGFTHQRLAQQIHDEGLAVDASSLPKLPSGRIERAAADELFAQIKVDWEADPDNWK 119
Query 121 RWYRLARAYDYAGDRRRAREAMKTALQLEGRAR 153
+ +RLARAYDYAGDR RARE M+ A++LE R+R
Sbjct 120 QNFRLARAYDYAGDRSRARETMRRAVELERRSR 152
>gi|312139346|ref|YP_004006682.1| integral membrane protein [Rhodococcus equi 103S]
gi|311888685|emb|CBH47997.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=155
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/132 (57%), Positives = 98/132 (75%), Gaps = 0/132 (0%)
Query 22 YLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLARLIAEDGL 81
Y V+LG+ +A+I GRA LG+A+L+LP +G+W ++AT+R+G A+Q LAR + ++GL
Sbjct 22 YFVLLGQRGIALIQDGRAVPVVLGIAVLVLPFLGVWMVVATIRSGLAHQHLARRMHDEGL 81
Query 82 DIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAGDRRRAREA 141
++D LPRR SGRI+RDAAD LFA V+ E E D D+WR YRLARAYDYAGDR RARE
Sbjct 82 ELDVDDLPRRPSGRIERDAADELFAQVKREWEADPDNWRNSYRLARAYDYAGDRGRARET 141
Query 142 MKTALQLEGRAR 153
M+ A+ LE R
Sbjct 142 MRRAVALEKHER 153
>gi|262202106|ref|YP_003273314.1| hypothetical protein Gbro_2173 [Gordonia bronchialis DSM 43247]
gi|262085453|gb|ACY21421.1| hypothetical protein Gbro_2173 [Gordonia bronchialis DSM 43247]
Length=169
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/135 (56%), Positives = 98/135 (73%), Gaps = 0/135 (0%)
Query 12 IAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQR 71
I + VA+V Y V+LG + +I +G AA GLGL +++LP+IG W + ATLRAG +QR
Sbjct 23 IGLLVVALVVYFVLLGWRGIGLIMTGSAAGIGLGLGMIVLPIIGAWLVYATLRAGIEHQR 82
Query 72 LARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDY 131
LA ++A++G ++D S+LPRR SGRI+RDAAD LFA V+ E E D DW YR+ARAYDY
Sbjct 83 LAAIMADEGRELDVSSLPRRPSGRIERDAADELFAQVKAEWEADPSDWHNTYRIARAYDY 142
Query 132 AGDRRRAREAMKTAL 146
AGDR RAR MK A+
Sbjct 143 AGDRSRARAMMKRAV 157
>gi|333919310|ref|YP_004492891.1| hypothetical protein AS9A_1642 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481531|gb|AEF40091.1| hypothetical protein AS9A_1642 [Amycolicicoccus subflavus DQS3-9A1]
Length=150
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/144 (51%), Positives = 105/144 (73%), Gaps = 0/144 (0%)
Query 6 LYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRA 65
+ +L I F+ VA+ YLV++GR + +I +G A A +G+A+L+LP +G++ TLRA
Sbjct 1 MKTKLAIVFISVALGFYLVLMGRQGMLLITNGNAVATTMGVAILVLPFLGVYVGYTTLRA 60
Query 66 GFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRL 125
GF + RLA+ I+ +G+++D S LPR SGR++RDAAD LF +V+ EL+ DDWR WYR+
Sbjct 61 GFQHSRLAQRISAEGMELDISDLPRMPSGRVKRDAADELFVSVKAELDAKPDDWRCWYRV 120
Query 126 ARAYDYAGDRRRAREAMKTALQLE 149
ARAYD AGDR+RAR AM A++LE
Sbjct 121 ARAYDIAGDRKRARAAMGRAVELE 144
>gi|54025850|ref|YP_120092.1| hypothetical protein nfa38800 [Nocardia farcinica IFM 10152]
gi|54017358|dbj|BAD58728.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=165
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/142 (51%), Positives = 103/142 (73%), Gaps = 0/142 (0%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
+ + IA + + + Y + LGR+A+ ++ SG+ A +G+ +L+LP++GLW ++A++RA
Sbjct 16 IVVFIAALVLVLGFYFLWLGRIAIGLLTSGKGAGIAIGIGVLLLPIVGLWVVVASVRAAL 75
Query 68 AYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLAR 127
A+Q LAR I E+G+++D S LPRR SGRI+R AAD LF V+ E E D D+WR YRLAR
Sbjct 76 AHQHLARRIHEEGMELDVSELPRRPSGRIERAAADELFLRVKQEWEADPDNWRVSYRLAR 135
Query 128 AYDYAGDRRRAREAMKTALQLE 149
AYDYAGDR RARE M+ A+ LE
Sbjct 136 AYDYAGDRTRARETMRRAVALE 157
>gi|343927035|ref|ZP_08766523.1| hypothetical protein GOALK_077_00590 [Gordonia alkanivorans NBRC
16433]
gi|343763093|dbj|GAA13449.1| hypothetical protein GOALK_077_00590 [Gordonia alkanivorans NBRC
16433]
Length=179
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/144 (53%), Positives = 101/144 (71%), Gaps = 1/144 (0%)
Query 11 IIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQ 70
+I F+ VA++ Y V+LG +I +G AA GLGL ++ LP+IG W + ATLRAG +Q
Sbjct 36 MIGFLVVALIVYFVLLGWRGFQLIATGTAAGIGLGLGVIALPLIGAWLIYATLRAGLEHQ 95
Query 71 RLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYD 130
+LA ++AE+G ++D S LP RASGR++R AAD LFA V+ E E D +DWR YR+ARAYD
Sbjct 96 KLAAIMAEEGRELDISNLPHRASGRMERGAADELFAQVKAEWEADPNDWRNTYRIARAYD 155
Query 131 YAGDRRRAREAMKTAL-QLEGRAR 153
YAGDR RAR MK A+ Q G +
Sbjct 156 YAGDRPRARAMMKRAVAQFHGSEQ 179
>gi|326382962|ref|ZP_08204652.1| hypothetical protein SCNU_08483 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198552|gb|EGD55736.1| hypothetical protein SCNU_08483 [Gordonia neofelifaecis NRRL
B-59395]
Length=161
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/137 (52%), Positives = 94/137 (69%), Gaps = 0/137 (0%)
Query 11 IIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQ 70
+IAF+ VAM Y V+LGR AV +IG G + GLG+ + +LP++G+W + +TLR+G +Q
Sbjct 14 VIAFLVVAMCVYFVLLGRTAVQLIGQGTVVSIGLGIGVFVLPLLGVWMVASTLRSGIEHQ 73
Query 71 RLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYD 130
R+ + G D++ LPRR SGRI++DAA ALF V+ E E D DW YR+ARAYD
Sbjct 74 RMVAAAQDLGRDLNVDDLPRRPSGRIEKDAALALFEEVKAEWEADPSDWVSTYRIARAYD 133
Query 131 YAGDRRRAREAMKTALQ 147
YAGDR RARE MK A +
Sbjct 134 YAGDRSRAREMMKRAAE 150
>gi|258652438|ref|YP_003201594.1| hypothetical protein Namu_2228 [Nakamurella multipartita DSM
44233]
gi|258555663|gb|ACV78605.1| hypothetical protein Namu_2228 [Nakamurella multipartita DSM
44233]
Length=160
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/150 (50%), Positives = 100/150 (67%), Gaps = 1/150 (0%)
Query 4 RTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATL 63
R ++++A + +A++AY ++LG A+A+I SG AA LG+ +L+LP+IG+ + L
Sbjct 3 RAYRTRIVVALLTLALIAYFILLGGRAIALIESGSAAGIALGIGVLLLPIIGVVLLFWEL 62
Query 64 RAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWY 123
R G+ QRL R +AE D S LPRR SGR++RDAADA F VR +E DWR WY
Sbjct 63 RFGWQTQRLGRQLAEQDRLPDDSDLPRRPSGRVERDAADAHFETVRERVEAAPQDWRGWY 122
Query 124 RLARAYDYAGDRRRAREAMKTALQLE-GRA 152
LA AYD AGDR+RAR AM+ A+ LE GRA
Sbjct 123 ELAHAYDLAGDRKRARAAMRHAIDLERGRA 152
>gi|302528522|ref|ZP_07280864.1| tetratricopeptide TPR_2 repeat protein [Streptomyces sp. AA4]
gi|302437417|gb|EFL09233.1| tetratricopeptide TPR_2 repeat protein [Streptomyces sp. AA4]
Length=149
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 93/140 (67%), Gaps = 0/140 (0%)
Query 14 FMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLA 73
M A+V YLV+L AVA++G+G A LG+ + +LP++G+W ++ T R+G QRL+
Sbjct 9 LMTAALVVYLVLLADRAVALLGTGTPAGIALGIGVFLLPLLGVWIVVVTWRSGMQIQRLS 68
Query 74 RLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAG 133
R + +G D S LPRR SGR+ RDAADA F R E+E +DWR WYRLA AYD AG
Sbjct 69 RQLDAEGGLPDVSDLPRRPSGRVDRDAADAWFDRRRAEVEASQEDWRAWYRLAYAYDIAG 128
Query 134 DRRRAREAMKTALQLEGRAR 153
DRRRAR M+ A++LE R
Sbjct 129 DRRRARATMRKAIELEAAER 148
>gi|257055507|ref|YP_003133339.1| hypothetical protein Svir_14720 [Saccharomonospora viridis DSM
43017]
gi|256585379|gb|ACU96512.1| hypothetical protein Svir_14720 [Saccharomonospora viridis DSM
43017]
Length=153
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/145 (50%), Positives = 93/145 (65%), Gaps = 0/145 (0%)
Query 5 TLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLR 64
T+ + + + +A+ YLV+L AV +I SG A GLG+ + LPV+G W + AT R
Sbjct 4 TVKTRNLAVVVTIAVGIYLVLLAGRAVELIRSGDPVAVGLGVGVFALPVLGAWIVAATWR 63
Query 65 AGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYR 124
+G QRLAR + E+G D S LPRR SGR+ + AAD F R E+E D DWRRWYR
Sbjct 64 SGMQIQRLARRLEEEGGLPDTSELPRRPSGRVDKAAADEWFEQRRAEVEADPRDWRRWYR 123
Query 125 LARAYDYAGDRRRAREAMKTALQLE 149
LA AYD AGDRRRAR M+ A++LE
Sbjct 124 LAVAYDIAGDRRRARATMRKAVELE 148
>gi|300788160|ref|YP_003768451.1| hypothetical protein AMED_6315 [Amycolatopsis mediterranei U32]
gi|299797674|gb|ADJ48049.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340529745|gb|AEK44950.1| hypothetical protein RAM_32385 [Amycolatopsis mediterranei S699]
Length=147
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/140 (48%), Positives = 89/140 (64%), Gaps = 0/140 (0%)
Query 14 FMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLA 73
+ A++ YL +L A A+ +G LG +L+LPV+G+W ++ T R G QRL+
Sbjct 4 LLTAALIVYLFLLADRAFALFKTGTGVGIALGAGVLLLPVLGIWVVVVTWRNGLQVQRLS 63
Query 74 RLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAG 133
R + +G D S LPRR SGR+ R+AADA F R E+E D ++WR WY+LA AYD AG
Sbjct 64 RQLDTEGALPDVSDLPRRPSGRVDREAADAWFGERRAEVEADQENWRVWYKLAYAYDIAG 123
Query 134 DRRRAREAMKTALQLEGRAR 153
DRRRARE MK A++LE R
Sbjct 124 DRRRARETMKKAIELEAAER 143
>gi|296139471|ref|YP_003646714.1| hypothetical protein Tpau_1757 [Tsukamurella paurometabola DSM
20162]
gi|296027605|gb|ADG78375.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=158
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/151 (48%), Positives = 97/151 (65%), Gaps = 0/151 (0%)
Query 3 RRTLYVQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIAT 62
R L L+I F+ VAM+ Y+ ++G A ++ G A GLG +++L ++GLW + +
Sbjct 8 RSNLGPLLVIGFLSVAMLVYIGLIGVWAWMIMRRGGGANLGLGAGMIVLGIVGLWILYSV 67
Query 63 LRAGFAYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRW 122
LR G+A+QRLA E G D+D S LP+ SGR+ RD ADALFA V+ E E D D W
Sbjct 68 LRNGYAHQRLAAQAKELGRDLDVSDLPKMPSGRVDRDCADALFAEVKAEYEADPDSWVNV 127
Query 123 YRLARAYDYAGDRRRAREAMKTALQLEGRAR 153
YRLARAYDYAGDR RAR+ M A+ +E + R
Sbjct 128 YRLARAYDYAGDRSRARDWMTRAVSMEKKGR 158
>gi|256379817|ref|YP_003103477.1| hypothetical protein Amir_5820 [Actinosynnema mirum DSM 43827]
gi|255924120|gb|ACU39631.1| hypothetical protein Amir_5820 [Actinosynnema mirum DSM 43827]
Length=150
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/131 (49%), Positives = 89/131 (68%), Gaps = 0/131 (0%)
Query 18 AMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLARLIA 77
A+V Y V+LG AVA++GSG LG+ +LI+PVIG+W + + LR GFA + +AR +
Sbjct 13 ALVVYFVLLGGRAVALLGSGEPVGIALGVGVLIMPVIGVWVVWSNLRFGFATEAMARELD 72
Query 78 EDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAGDRRR 137
E G D S LPR SGR++R+AAD F + ++E +DWR W+ LA+AYD AGDR R
Sbjct 73 EAGALPDLSELPRMPSGRVEREAADEWFERRKADVEAAPEDWRPWFLLAQAYDLAGDRGR 132
Query 138 AREAMKTALQL 148
AR+ M+TA+ L
Sbjct 133 ARDTMRTAIGL 143
>gi|323356770|ref|YP_004223166.1| hypothetical protein MTES_0322 [Microbacterium testaceum StLB037]
gi|323273141|dbj|BAJ73286.1| hypothetical protein MTES_0322 [Microbacterium testaceum StLB037]
Length=150
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/148 (48%), Positives = 97/148 (66%), Gaps = 5/148 (3%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
V+L +A M V ++ Y+ + G+ A+ ++GSG A +G+AL++LP++ LWA+ L G
Sbjct 3 VRLAVALMTVLLLLYVFLAGQRAIVLLGSGEAVGVVMGVALIVLPLLALWAIGRELWFGV 62
Query 68 AYQRLA-RLIAEDGL-DIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRL 125
QR+ RL AE GL D D LP R SGRI+R+ DALF R ++E DDWR YRL
Sbjct 63 RAQRVGERLDAEGGLPDED---LPVRPSGRIEREDGDALFPRYRADVEAHPDDWRARYRL 119
Query 126 ARAYDYAGDRRRAREAMKTALQLEGRAR 153
AYD AGDRRRAREA++TA++LE R
Sbjct 120 GLAYDAAGDRRRAREAIRTAIRLESAER 147
>gi|134102358|ref|YP_001108019.1| TPR repeat-containing protein [Saccharopolyspora erythraea NRRL
2338]
gi|291009329|ref|ZP_06567302.1| TPR repeat-containing protein [Saccharopolyspora erythraea NRRL
2338]
gi|133914981|emb|CAM05094.1| tetratricopeptide TPR_2 repeat protein [Saccharopolyspora erythraea
NRRL 2338]
Length=162
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 80/120 (67%), Gaps = 0/120 (0%)
Query 30 AVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLARLIAEDGLDIDASALP 89
A MI SG+ LGLA+L+LPV+G ++ LR G + +RLAR + ++G D S LP
Sbjct 36 AFTMIVSGQPVFVALGLAILVLPVLGAVLVVDQLRFGASTERLARRLHDEGALPDVSHLP 95
Query 90 RRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAGDRRRAREAMKTALQLE 149
R SGR++RDAADA F + ELE DWR W+ LA+AYD AGDR R R+AM+ A++LE
Sbjct 96 LRPSGRVERDAADAWFDEKQRELEAAPRDWRAWFALAQAYDLAGDRNRGRKAMRRAIELE 155
>gi|319949594|ref|ZP_08023638.1| hypothetical protein ES5_09063 [Dietzia cinnamea P4]
gi|319436745|gb|EFV91821.1| hypothetical protein ES5_09063 [Dietzia cinnamea P4]
Length=159
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/148 (42%), Positives = 90/148 (61%), Gaps = 2/148 (1%)
Query 10 LIIAFMCVAMVAYLVMLGRVAVAMI-GSGRAAAAGLGLALLILPVIGLWAMIATLRAGFA 68
L++A +V + L + +M S + GLG+ +L+L V+G WA A +R G
Sbjct 8 LVMALTAAGLVVAFLYLLYLGWSMFRASEHLSVRGLGVGILLLAVVGAWATWAIVRNGLE 67
Query 69 YQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARA 128
Q+++ A +G+++D + L RR SGR++R AAD LF V E + DDWR YRLARA
Sbjct 68 LQKISAAAAAEGVELDLTGLDRRPSGRLERHAADELFDRVSAEYQAAPDDWRSTYRLARA 127
Query 129 YDYAGDRRRAREAMKTALQL-EGRARPG 155
YD+AGDR RAR+ M+TA+ L E + PG
Sbjct 128 YDHAGDRVRARDMMRTAISLHEAESAPG 155
>gi|170781601|ref|YP_001709933.1| hypothetical protein CMS_1195 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156169|emb|CAQ01310.1| putative membrane protein [Clavibacter michiganensis subsp. sepedonicus]
Length=149
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/146 (49%), Positives = 93/146 (64%), Gaps = 4/146 (2%)
Query 12 IAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQR 71
+A M V MV YL + G++AV ++ SG GLALLILP++G+WA++ L G R
Sbjct 7 VAVMAVLMVLYLTLAGQIAVLLLISGEPVGVVFGLALLILPLVGVWALVRELSFGVRSAR 66
Query 72 LARLI-AEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYD 130
LAR++ E GL + + LP RASGR RDAAD F A + E+E D WR W+RL AYD
Sbjct 67 LARILDGEGGLPV--ADLPTRASGRPIRDAADEAFPAYQAEVEQDPASWRAWFRLGLAYD 124
Query 131 YAGDRRRAREAMKTALQLEGRARPGA 156
+GDRRRAR A++ A+ L RA P A
Sbjct 125 ASGDRRRARGAIRRAIALH-RAEPAA 149
>gi|325962834|ref|YP_004240740.1| hypothetical protein Asphe3_14320 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468921|gb|ADX72606.1| hypothetical protein Asphe3_14320 [Arthrobacter phenanthrenivorans
Sphe3]
Length=162
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/142 (43%), Positives = 90/142 (64%), Gaps = 3/142 (2%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
++ + + + +V YLV+ + ++ ++ AA +G A L+LPVIG WA+I L G
Sbjct 13 TKIWVGAVTLLLVFYLVVSFQRSILLLTDSNLAAQAIGAAYLVLPVIGAWALIRELMFGA 72
Query 68 AYQRLARLI-AEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLA 126
+++AR++ AE GL +D LPR +GRI R AADA F R E E DDWR W+RL+
Sbjct 73 RTEQMARVLEAEGGLPVDE--LPRTPAGRIVRSAADAEFEKYRAEAEAAPDDWRSWFRLS 130
Query 127 RAYDYAGDRRRAREAMKTALQL 148
AYD AGDR+RAR +M+ A++L
Sbjct 131 CAYDAAGDRKRARASMRDAVRL 152
>gi|220912220|ref|YP_002487529.1| tetratricopeptide TPR_2 repeat-containing protein [Arthrobacter
chlorophenolicus A6]
gi|219859098|gb|ACL39440.1| tetratricopeptide TPR_2 repeat protein [Arthrobacter chlorophenolicus
A6]
Length=159
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/142 (41%), Positives = 91/142 (65%), Gaps = 3/142 (2%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
++ + + + +V YLV+ + ++ ++ G A +G A L+LP++G WA+I L G
Sbjct 13 TKIWVGLVTLLLVFYLVVSLQRSILLLTDGNLTAQAIGAAYLVLPIVGAWALIRELMFGA 72
Query 68 AYQRLARLI-AEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLA 126
+++A+++ AE GL +D LPR +GRI R+AADA F + E E DDWR W+RL+
Sbjct 73 RTEQMAKVLEAEGGLPVDE--LPRTPAGRIVREAADAEFEKYKAEAEAAPDDWRSWFRLS 130
Query 127 RAYDYAGDRRRAREAMKTALQL 148
AYD AGDR+RAR +M+ A++L
Sbjct 131 CAYDAAGDRKRARASMRDAVRL 152
>gi|116670010|ref|YP_830943.1| TPR repeat-containing protein [Arthrobacter sp. FB24]
gi|116610119|gb|ABK02843.1| Tetratricopeptide TPR_2 repeat protein [Arthrobacter sp. FB24]
Length=157
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/142 (41%), Positives = 91/142 (65%), Gaps = 3/142 (2%)
Query 8 VQLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGF 67
++ + + + +V YLV+ + +V ++ A +G A L+LPVIG WA++ L G
Sbjct 13 TKIWVGAVTLLLVFYLVVSFQRSVLLLADPNPVAKAIGAAYLVLPVIGAWALVRELLFGA 72
Query 68 AYQRLARLI-AEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLA 126
+++A+++ AE GL +D L R +GRI R++ADA F RTE E+ +DWR W+RL+
Sbjct 73 RTEQMAKVLEAEGGLPVDN--LQRTPAGRIVRESADAEFEKYRTEAEEAPEDWRSWFRLS 130
Query 127 RAYDYAGDRRRAREAMKTALQL 148
AYD AGDR+RAR +M+ AL+L
Sbjct 131 CAYDAAGDRKRARASMRDALKL 152
>gi|302558055|ref|ZP_07310397.1| tetratricopeptide repeat domain-containing protein [Streptomyces
griseoflavus Tu4000]
gi|302475673|gb|EFL38766.1| tetratricopeptide repeat domain-containing protein [Streptomyces
griseoflavus Tu4000]
Length=153
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/146 (44%), Positives = 85/146 (59%), Gaps = 3/146 (2%)
Query 9 QLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFA 68
++ A +V Y V++G V +I +G G+A+LILPVIG+W + +
Sbjct 10 KISYALTAAVLVVYFVLVGSRGVLLIEAGTPLTVTFGVAVLILPVIGVWFLWKNTEFVRS 69
Query 69 YQRLARLI-AEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLAR 127
RLA L+ AE GL +D L R SGRI RD+ADA+FA + E ED DDWR W+RLA
Sbjct 70 ANRLAALLDAEGGLPVDE--LKRLPSGRIDRDSADAVFARRKAETEDAPDDWRSWFRLAV 127
Query 128 AYDYAGDRRRAREAMKTALQLEGRAR 153
AY A D RAR+AM+ A+ L A+
Sbjct 128 AYHDARDTPRARKAMQRAIALHRTAQ 153
>gi|295395385|ref|ZP_06805584.1| TPR repeat-containing protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971707|gb|EFG47583.1| TPR repeat-containing protein [Brevibacterium mcbrellneri ATCC
49030]
Length=150
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/135 (40%), Positives = 83/135 (62%), Gaps = 1/135 (0%)
Query 15 MCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLAR 74
M V + AYLV++ ++ + A +G+AL + PVI +WA++ L G + +RLA+
Sbjct 11 MVVLLGAYLVVMVNRGWILLTDPQLIAKIMGVALFVFPVIAVWAIVRELFFGASMERLAK 70
Query 75 LIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAGD 134
++ ++G + LPR GRI R+AAD F R E E D ++WR W+RL+ AYD +GD
Sbjct 71 ILEKEG-GLPPDNLPRTPGGRIVREAADKEFEKYRAEAEADPENWRSWFRLSCAYDASGD 129
Query 135 RRRAREAMKTALQLE 149
R+RAR M+ A++L
Sbjct 130 RKRARATMRKAIKLH 144
>gi|148273220|ref|YP_001222781.1| hypothetical protein CMM_2039 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831150|emb|CAN02102.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length=149
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/140 (47%), Positives = 90/140 (65%), Gaps = 3/140 (2%)
Query 12 IAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQR 71
+A M V MV YL + G++A+ ++ SG G+ALL+LP++G+WA++ L G R
Sbjct 7 VAVMAVLMVLYLALAGQIAILLLISGEPVGVVFGVALLVLPLLGVWALVRELSFGVRSAR 66
Query 72 LARLI-AEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYD 130
L R++ E GL + + LP RASGR RDAADA F A + E+E D WR W+RL AYD
Sbjct 67 LVRILDGEGGLPV--ADLPTRASGRPLRDAADAAFPAYQAEVEQDPASWRAWFRLGLAYD 124
Query 131 YAGDRRRAREAMKTALQLEG 150
+GDRRRAR A++ A+ L G
Sbjct 125 ASGDRRRARGAIRRAIALHG 144
>gi|297191694|ref|ZP_06909092.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
gi|197721450|gb|EDY65358.1| conserved hypothetical protein [Streptomyces pristinaespiralis
ATCC 25486]
Length=150
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/148 (46%), Positives = 84/148 (57%), Gaps = 5/148 (3%)
Query 11 IIAFMCVA-MVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLR-AGFA 68
I F+ A +V Y V++G V ++ G A G+A+LILPVIG+W + R A
Sbjct 5 ITYFVTAAVLVVYFVLVGSRGVMLLKQGTALTVTFGVAVLILPVIGVWFLWMNTRFVNRA 64
Query 69 YQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARA 128
Q A L AE GL +D L R GRI RD+ADA+FA R E ED DWR W+RLA A
Sbjct 65 NQLAAELEAEGGLPVDE--LVRTPGGRIDRDSADAVFAKRRAETEDSPGDWRCWFRLAVA 122
Query 129 YDYAGDRRRAREAMKTALQL-EGRARPG 155
Y A D RAR AM+ A+ L +GR P
Sbjct 123 YHDARDTPRARRAMQRAIALHDGRPVPN 150
>gi|290957006|ref|YP_003488188.1| hypothetical protein SCAB_25221 [Streptomyces scabiei 87.22]
gi|260646532|emb|CBG69629.1| putative membrane protein [Streptomyces scabiei 87.22]
Length=151
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query 9 QLIIAFMCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLR-AGF 67
+L A +V Y V++G + +I +G G+A+L+LP IGLW + +
Sbjct 4 KLTYAVTAAVLVVYFVLVGSRGILLIETGTPITIAFGVAVLVLPAIGLWFLWKNTQFVRR 63
Query 68 AYQRLARLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLAR 127
A Q A L AE GL +D L R SGRI RD+AD +F + E ED DDWR W+RLA
Sbjct 64 ANQLAAELDAEGGLPVDE--LKRTPSGRIDRDSADEVFERRKEETEDAPDDWRTWFRLAV 121
Query 128 AYDYAGDRRRAREAMKTALQL-EGRARPGA 156
AY A D RAR+AM+ A+ L +GR P A
Sbjct 122 AYHDARDTPRARKAMQRAIALHDGRPAPTA 151
>gi|239991187|ref|ZP_04711851.1| hypothetical protein SrosN1_28039 [Streptomyces roseosporus NRRL
11379]
gi|291448181|ref|ZP_06587571.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351128|gb|EFE78032.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length=180
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/147 (45%), Positives = 83/147 (57%), Gaps = 5/147 (3%)
Query 11 IIAFMCVA-MVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAY 69
I F+ A +V Y ++G V +I G G+A+LILPVIG+W + +
Sbjct 5 ITYFITAAVLVFYFFLVGSRGVMLIRHGTPVTVMFGVAVLILPVIGVWFLWKNTQFVRRA 64
Query 70 QRLA-RLIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARA 128
LA L AE GL +D LPR SGRI+RDAADA+F R E ED DDWR W+RLA A
Sbjct 65 NALAAELDAEGGLPVDD--LPRTPSGRIERDAADAVFTKRREETEDAPDDWRTWFRLAVA 122
Query 129 YDYAGDRRRAREAMKTALQLEGRARPG 155
Y A D RAR+AM+ A+ L R P
Sbjct 123 YQDARDTPRARKAMQRAIALH-RTSPS 148
>gi|284030896|ref|YP_003380827.1| hypothetical protein Kfla_2963 [Kribbella flavida DSM 17836]
gi|283810189|gb|ADB32028.1| hypothetical protein Kfla_2963 [Kribbella flavida DSM 17836]
Length=146
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/134 (46%), Positives = 85/134 (64%), Gaps = 3/134 (2%)
Query 15 MCVAMVAYLVMLGRVAVAMIGSGRAAAAGLGLALLILPVIGLWAMIATLRAGFAYQRLAR 74
+ V Y V+LG V +IG+G A GLG+A+L++PV+G + + L+ G ++LA
Sbjct 10 IAAVFVVYAVLLGWRGVLLIGTGEPVAIGLGVAVLVIPVVGAYLVWRELQFGRRTEQLAH 69
Query 75 -LIAEDGLDIDASALPRRASGRIQRDAADALFAAVRTELEDDADDWRRWYRLARAYDYAG 133
L E GL +D LPRR SGR+ R AADA F + +E DDWR W+RL+ AYD AG
Sbjct 70 ELDLEGGLPVDD--LPRRPSGRVDRAAADAAFTQYKVAVEAAPDDWRAWFRLSTAYDAAG 127
Query 134 DRRRAREAMKTALQ 147
DR+RAR +M+TA+
Sbjct 128 DRKRARASMRTAIS 141
Lambda K H
0.329 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129486540748
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40