BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2774c

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842312|ref|NP_337349.1|  hypothetical protein MT2844 [Mycoba...   267    3e-70
gi|15609911|ref|NP_217290.1|  hypothetical protein Rv2774c [Mycob...   266    6e-70
gi|340627776|ref|YP_004746228.1|  hypothetical protein MCAN_28021...   262    1e-68
gi|207340608|gb|EDZ68905.1|  hypothetical protein AWRI1631_161280...  37.4    0.75 
gi|116754187|ref|YP_843305.1|  Pyrrolo-quinoline quinone [Methano...  34.7    4.6  


>gi|15842312|ref|NP_337349.1| hypothetical protein MT2844 [Mycobacterium tuberculosis CDC1551]
 gi|254232872|ref|ZP_04926199.1| hypothetical protein TBCG_02710 [Mycobacterium tuberculosis C]
 gi|13882607|gb|AAK47163.1| hypothetical protein MT2844 [Mycobacterium tuberculosis CDC1551]
 gi|124601931|gb|EAY60941.1| hypothetical protein TBCG_02710 [Mycobacterium tuberculosis C]
Length=137

 Score =  267 bits (683),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)

Query  1    VGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA  60
            VGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA
Sbjct  4    VGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA  63

Query  61   VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG  120
            VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG
Sbjct  64   VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG  123

Query  121  FGAAAVVGLEDGPV  134
            FGAAAVVGLEDGPV
Sbjct  124  FGAAAVVGLEDGPV  137


>gi|15609911|ref|NP_217290.1| hypothetical protein Rv2774c [Mycobacterium tuberculosis H37Rv]
 gi|31793949|ref|NP_856442.1| hypothetical protein Mb2796c [Mycobacterium bovis AF2122/97]
 gi|121638653|ref|YP_978877.1| hypothetical protein BCG_2791c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 53 more sequence titles
 Length=134

 Score =  266 bits (681),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%)

Query  1    VGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA  60
            +GTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA
Sbjct  1    MGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA  60

Query  61   VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG  120
            VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG
Sbjct  61   VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG  120

Query  121  FGAAAVVGLEDGPV  134
            FGAAAVVGLEDGPV
Sbjct  121  FGAAAVVGLEDGPV  134


>gi|340627776|ref|YP_004746228.1| hypothetical protein MCAN_28021 [Mycobacterium canettii CIPT 
140010059]
 gi|340005966|emb|CCC45133.1| hypothetical protein MCAN_28021 [Mycobacterium canettii CIPT 
140010059]
Length=134

 Score =  262 bits (670),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 131/134 (98%), Positives = 132/134 (99%), Gaps = 0/134 (0%)

Query  1    VGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA  60
            +GTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA
Sbjct  1    MGTAVEVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGA  60

Query  61   VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAG  120
            VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHA 
Sbjct  61   VPALLRVRFPWPPFEPDVRLSPYLALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAQ  120

Query  121  FGAAAVVGLEDGPV  134
             GAAAVVGLEDGPV
Sbjct  121  LGAAAVVGLEDGPV  134


>gi|207340608|gb|EDZ68905.1| hypothetical protein AWRI1631_161280 [Saccharomyces cerevisiae 
AWRI1631]
Length=207

 Score = 37.4 bits (85),  Expect = 0.75, Method: Compositional matrix adjust.
 Identities = 20/53 (38%), Positives = 29/53 (55%), Gaps = 2/53 (3%)

Query  78   VRLSPYL-ALHGICRWGGSDSCDRTTVQVFHLHSINKRLTAHAGFGAAAVVGL  129
            +R+ P+   L G C WGGSDS   T  +     ++++  TA AG G+  V GL
Sbjct  30   IRMFPFFGVLEGSC-WGGSDSNLSTANETLFNETVDRSFTASAGEGSIGVCGL  81


>gi|116754187|ref|YP_843305.1| Pyrrolo-quinoline quinone [Methanosaeta thermophila PT]
 gi|116665638|gb|ABK14665.1| Pyrrolo-quinoline quinone [Methanosaeta thermophila PT]
Length=797

 Score = 34.7 bits (78),  Expect = 4.6, Method: Compositional matrix adjust.
 Identities = 18/56 (33%), Positives = 27/56 (49%), Gaps = 7/56 (12%)

Query  6    EVGWRDPCGLAVGELRCAPAVSDQPVVGCAGCPLVDMVDFAPVTGCVAVGSTMGAV  61
            E+ W+ P  L +G+ RC+PA +D       G   V   DF    G  A+ +T G +
Sbjct  713  ELIWKTPSELEIGDWRCSPAYAD-------GLVFVGRPDFMEYDGIFALNATTGEI  761



Lambda     K      H
   0.324    0.141    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129924441710


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40