BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2793c Length=298 Score E Sequences producing significant alignments: (Bits) Value gi|15609930|ref|NP_217309.1| tRNA pseudouridine synthase B [Myco... 581 5e-164 gi|46015795|pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudour... 581 6e-164 gi|167968623|ref|ZP_02550900.1| tRNA pseudouridine synthase B [M... 580 1e-163 gi|344220621|gb|AEN01252.1| tRNA pseudouridine synthase B [Mycob... 578 4e-163 gi|289758920|ref|ZP_06518298.1| tRNA pseudouridine synthase B tr... 493 2e-137 gi|340627793|ref|YP_004746245.1| putative tRNA pseudouridine syn... 482 2e-134 gi|296171640|ref|ZP_06852854.1| tRNA pseudouridine synthase B [M... 461 8e-128 gi|240171309|ref|ZP_04749968.1| tRNA pseudouridine synthase B [M... 447 7e-124 gi|183981930|ref|YP_001850221.1| tRNA pseudouridine synthase B T... 440 1e-121 gi|41408996|ref|NP_961832.1| tRNA pseudouridine synthase B [Myco... 436 2e-120 gi|118617697|ref|YP_906029.1| tRNA pseudouridine synthase B [Myc... 434 6e-120 gi|336459008|gb|EGO37960.1| tRNA pseudouridine 55 synthase [Myco... 434 8e-120 gi|254821335|ref|ZP_05226336.1| tRNA pseudouridine synthase B [M... 434 9e-120 gi|15827813|ref|NP_302076.1| tRNA pseudouridine synthase B [Myco... 431 8e-119 gi|120403320|ref|YP_953149.1| tRNA pseudouridine synthase B [Myc... 426 2e-117 gi|254776117|ref|ZP_05217633.1| tRNA pseudouridine synthase B [M... 415 5e-114 gi|118464111|ref|YP_882859.1| tRNA pseudouridine synthase B [Myc... 413 2e-113 gi|333991189|ref|YP_004523803.1| tRNA pseudouridine synthase B T... 411 6e-113 gi|342858341|ref|ZP_08714996.1| tRNA pseudouridine synthase B [M... 399 3e-109 gi|169630198|ref|YP_001703847.1| tRNA pseudouridine synthase B [... 396 2e-108 gi|108799062|ref|YP_639259.1| tRNA pseudouridine synthase B [Myc... 392 3e-107 gi|118472061|ref|YP_886986.1| tRNA pseudouridine synthase B [Myc... 388 5e-106 gi|315444939|ref|YP_004077818.1| tRNA pseudouridine synthase B [... 387 1e-105 gi|145224608|ref|YP_001135286.1| tRNA pseudouridine synthase B [... 383 2e-104 gi|289444341|ref|ZP_06434085.1| tRNA pseudouridine synthase B [M... 352 4e-95 gi|312139336|ref|YP_004006672.1| pseudouridylate synthase [Rhodo... 337 1e-90 gi|326382951|ref|ZP_08204641.1| tRNA pseudouridine synthase B [G... 335 4e-90 gi|325672785|ref|ZP_08152481.1| tRNA pseudouridine synthase B [R... 334 1e-89 gi|111023610|ref|YP_706582.1| tRNA pseudouridine synthase B [Rho... 328 6e-88 gi|226306126|ref|YP_002766086.1| tRNA pseudouridine synthase Tru... 328 6e-88 gi|229490936|ref|ZP_04384771.1| tRNA pseudouridine synthase B [R... 328 8e-88 gi|226366099|ref|YP_002783882.1| tRNA pseudouridine synthase B [... 324 8e-87 gi|296139441|ref|YP_003646684.1| tRNA pseudouridine synthase B [... 323 3e-86 gi|343927046|ref|ZP_08766534.1| tRNA pseudouridine synthase B [G... 323 3e-86 gi|262202092|ref|YP_003273300.1| tRNA pseudouridine synthase B [... 321 7e-86 gi|333919299|ref|YP_004492880.1| tRNA pseudouridine synthase B [... 321 9e-86 gi|311739671|ref|ZP_07713506.1| tRNA pseudouridine synthase B [C... 319 3e-85 gi|134102366|ref|YP_001108027.1| hypothetical protein SACE_5919 ... 317 1e-84 gi|319950922|ref|ZP_08024799.1| tRNA pseudouridine synthase B [D... 317 1e-84 gi|306836341|ref|ZP_07469320.1| tRNA pseudouridine synthase B [C... 317 2e-84 gi|54026023|ref|YP_120265.1| tRNA pseudouridine synthase B [Noca... 316 3e-84 gi|227503416|ref|ZP_03933465.1| tRNA pseudouridine synthase B [C... 315 4e-84 gi|300780971|ref|ZP_07090825.1| tRNA pseudouridine synthase B [C... 315 5e-84 gi|227833348|ref|YP_002835055.1| tRNA pseudouridine synthase B [... 314 9e-84 gi|227504834|ref|ZP_03934883.1| tRNA pseudouridine synthase B [C... 313 1e-83 gi|291009320|ref|ZP_06567293.1| hypothetical protein SeryN2_3277... 313 2e-83 gi|256379825|ref|YP_003103485.1| tRNA pseudouridine synthase B [... 310 2e-82 gi|255325199|ref|ZP_05366305.1| tRNA pseudouridine synthase B [C... 310 2e-82 gi|38234052|ref|NP_939819.1| tRNA pseudouridine synthase B [Cory... 306 2e-81 gi|302528530|ref|ZP_07280872.1| tRNA pseudouridine synthase B [S... 306 2e-81 >gi|15609930|ref|NP_217309.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv] gi|15842331|ref|NP_337368.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551] gi|31793969|ref|NP_856462.1| tRNA pseudouridine synthase B [Mycobacterium bovis AF2122/97] 74 more sequence titles Length=298 Score = 581 bits (1497), Expect = 5e-164, Method: Compositional matrix adjust. Identities = 298/298 (100%), Positives = 298/298 (100%), Gaps = 0/298 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS Sbjct 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR Sbjct 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD Sbjct 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG Sbjct 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 >gi|46015795|pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub) gi|46015796|pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub) Length=316 Score = 581 bits (1497), Expect = 6e-164, Method: Compositional matrix adjust. Identities = 298/298 (100%), Positives = 298/298 (100%), Gaps = 0/298 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS Sbjct 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR Sbjct 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD Sbjct 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG Sbjct 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 >gi|167968623|ref|ZP_02550900.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra] Length=298 Score = 580 bits (1494), Expect = 1e-163, Method: Compositional matrix adjust. Identities = 297/298 (99%), Positives = 298/298 (100%), Gaps = 0/298 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS Sbjct 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR Sbjct 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD Sbjct 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSV+VLRPATMHPG Sbjct 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVSVLRPATMHPG 298 >gi|344220621|gb|AEN01252.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2] Length=298 Score = 578 bits (1490), Expect = 4e-163, Method: Compositional matrix adjust. Identities = 297/298 (99%), Positives = 297/298 (99%), Gaps = 0/298 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS Sbjct 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRF LLAARRRDQLIDIDVEIDCSSGTYIR Sbjct 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFALLAARRRDQLIDIDVEIDCSSGTYIR 180 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD Sbjct 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG Sbjct 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 >gi|289758920|ref|ZP_06518298.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T85] gi|289714484|gb|EFD78496.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T85] Length=255 Score = 493 bits (1269), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 255/255 (100%), Positives = 255/255 (100%), Gaps = 0/255 (0%) Query 44 MATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAI 103 MATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAI Sbjct 1 MATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAI 60 Query 104 DAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ 163 DAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ Sbjct 61 DAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ 120 Query 164 LIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPA 223 LIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPA Sbjct 121 LIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPA 180 Query 224 LSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSR 283 LSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSR Sbjct 181 LSLSLDEACLLMFARRDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSR 240 Query 284 TRSVAVLRPATMHPG 298 TRSVAVLRPATMHPG Sbjct 241 TRSVAVLRPATMHPG 255 >gi|340627793|ref|YP_004746245.1| putative tRNA pseudouridine synthase B TRUB [Mycobacterium canettii CIPT 140010059] gi|340005983|emb|CCC45150.1| putative tRNA pseudouridine synthase B TRUB (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase) [Mycobacterium canettii CIPT 140010059] Length=296 Score = 482 bits (1241), Expect = 2e-134, Method: Compositional matrix adjust. Identities = 247/296 (84%), Positives = 272/296 (92%), Gaps = 1/296 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSATGPGIVV+DKPAGMTSHDVVGRCRRIF+TRRVGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSATGPGIVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKIL 60 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTAA KSYAATIRLGQTTSTEDAEGQVLQSVPA+HLT+EAI+AAM LRGEIRQVPS+ Sbjct 61 GLLTAASKSYAATIRLGQTTSTEDAEGQVLQSVPAEHLTVEAIEAAMAGLRGEIRQVPSA 120 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-LIDIDVEIDCSSGTYI 179 VSA+KVGGRRAYRLAR+G++V+L+ARP+RI+RFEL+ RR ++D+DVE+DCSSGTYI Sbjct 121 VSAVKVGGRRAYRLAREGQAVELQARPVRIERFELVRMRRAAAGIVDLDVEVDCSSGTYI 180 Query 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239 RALARDLGDALGVGGHVTALRR RVGRF LDQA +LDDLA RP LSLSLD ACLL+F R Sbjct 181 RALARDLGDALGVGGHVTALRRIRVGRFALDQAVTLDDLARRPRLSLSLDAACLLLFPPR 240 Query 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 DLT EA+AA NGR L + GIDGVYAA DADGRVIALLRDEGSRT+SVAVLRPA+M Sbjct 241 DLTVEEAAAAGNGRPLSSAGIDGVYAARDADGRVIALLRDEGSRTKSVAVLRPASM 296 >gi|296171640|ref|ZP_06852854.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894001|gb|EFG73764.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC BAA-614] Length=299 Score = 461 bits (1185), Expect = 8e-128, Method: Compositional matrix adjust. Identities = 233/294 (80%), Positives = 262/294 (90%), Gaps = 0/294 (0%) Query 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 S +G GIVV+DKPAGMTSHDVVGRCRRIF+TRRVGHAGTLDPMATGVLVIG++RATKILG Sbjct 4 SPSGRGIVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVDRATKILG 63 Query 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 LLT A KSYAATIRLGQTTSTEDAEG+VL SV A HLT EAI AA+ LRG+I QVPS+V Sbjct 64 LLTGASKSYAATIRLGQTTSTEDAEGEVLHSVSAAHLTREAIGAAVAGLRGDIEQVPSAV 123 Query 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRA 181 SAIKV GRRAYRL R+G++V+L ARP+RIDRFE+ R QL+D+DVE+DCSSGTY+RA Sbjct 124 SAIKVEGRRAYRLVREGQAVELAARPVRIDRFEVCDVRPAGQLVDVDVEVDCSSGTYVRA 183 Query 182 LARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDL 241 LARD+G ALGVGGH+TALRRTRVGRF L+QARSLDDLAERP LSL+LDEACLLMF RR+L Sbjct 184 LARDVGAALGVGGHLTALRRTRVGRFTLEQARSLDDLAERPGLSLTLDEACLLMFPRREL 243 Query 242 TAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +A EA A ANGR L A GIDGVYAACDADGRVIALLRDEG+RT+SV V+RPAT+ Sbjct 244 SAEEADATANGRPLAAAGIDGVYAACDADGRVIALLRDEGTRTKSVVVIRPATL 297 >gi|240171309|ref|ZP_04749968.1| tRNA pseudouridine synthase B [Mycobacterium kansasii ATCC 12478] Length=298 Score = 447 bits (1151), Expect = 7e-124, Method: Compositional matrix adjust. Identities = 229/295 (78%), Positives = 260/295 (89%), Gaps = 1/295 (0%) Query 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 S TGPG+VV+DKPAGMTSHDVVGRCRRIFATR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct 4 SRTGPGLVVVDKPAGMTSHDVVGRCRRIFATRKVGHAGTLDPMATGVLVIGIERATKILG 63 Query 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 LLTA KSYAATIRLG++TST+DAEG+VLQ+V A H+T E I + + L G+I QVPS+V Sbjct 64 LLTATSKSYAATIRLGRSTSTDDAEGEVLQTVSAAHVTDEQIASEIAGLCGDISQVPSAV 123 Query 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR-RDQLIDIDVEIDCSSGTYIR 180 SAIKVGGRRAY LARQG V L+ARP+R+DRF++LAARR D ++D+DVE+DCSSGTYIR Sbjct 124 SAIKVGGRRAYELARQGHDVALQARPVRVDRFDVLAARRGGDGVVDLDVEVDCSSGTYIR 183 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLGDALGVGGH+T+LRRTRVGRF LDQA SLD+LA+ P LSLSLD+ACLLMF RRD Sbjct 184 ALARDLGDALGVGGHLTSLRRTRVGRFGLDQACSLDELAQHPQLSLSLDDACLLMFPRRD 243 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 LTA EA A ANGR L GIDG+YAA DADGRVIALLRD+G RTRSV V+RPAT+ Sbjct 244 LTAGEAEATANGRPLAPAGIDGIYAAADADGRVIALLRDDGPRTRSVVVIRPATL 298 >gi|183981930|ref|YP_001850221.1| tRNA pseudouridine synthase B TruB [Mycobacterium marinum M] gi|183175256|gb|ACC40366.1| tRNA pseudouridine synthase B TruB [Mycobacterium marinum M] Length=301 Score = 440 bits (1131), Expect = 1e-121, Method: Compositional matrix adjust. Identities = 225/291 (78%), Positives = 252/291 (87%), Gaps = 0/291 (0%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 A KSYAATIRLGQTTSTEDAEG+ L SV A+H+ EAI AA+ L G+IRQVPS+VSAI Sbjct 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSAVSAI 130 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYIRALAR Sbjct 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIRALAR 190 Query 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 DLG AL VGGH+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct 191 DLGAALDVGGHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 Query 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 >gi|41408996|ref|NP_961832.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp. paratuberculosis K-10] gi|54036503|sp|Q73VW3.1|TRUB_MYCPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|41397355|gb|AAS05215.1| TruB [Mycobacterium avium subsp. paratuberculosis K-10] Length=293 Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 220/290 (76%), Positives = 254/290 (88%), Gaps = 0/290 (0%) Query 6 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 65 PG+VV+DKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query 66 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 125 A KSY+ATIRLGQ TST+DAEG V +SV A+HLT +AI+AA+ LRG+I QVPS+VSAIK Sbjct 64 AAKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query 126 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 185 V G+RAY+L R+G++V+L ARP+RIDRFE+ R +D+DVE+DCSSGTY+RALARD Sbjct 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARD 183 Query 186 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAE 245 LG ALGVGGH+TALRRTRVGRF L+QA LD+LAE P LS SLDEACLL+F RRDL+A E Sbjct 184 LGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADE 243 Query 246 ASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A AA NGR+L A GIDGVYAAC DGRVIALLRDEG+RT+SV VLRPAT+ Sbjct 244 AEAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTKSVVVLRPATL 293 >gi|118617697|ref|YP_906029.1| tRNA pseudouridine synthase B [Mycobacterium ulcerans Agy99] gi|189036545|sp|A0PQD9.1|TRUB_MYCUA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|118569807|gb|ABL04558.1| tRNA pseudouridine synthase B TruB [Mycobacterium ulcerans Agy99] Length=301 Score = 434 bits (1117), Expect = 6e-120, Method: Compositional matrix adjust. Identities = 222/291 (77%), Positives = 250/291 (86%), Gaps = 0/291 (0%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 GPGIVV+DKP MTSHDVVGRCRRIF TRR+GHAGTLDPMATGVLVIGIERATKILGLL Sbjct 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIERATKILGLLI 70 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 A KSYAATIRLGQTTSTEDAEG+ L SV A+H+ EAI AA+ L G+IRQVPS+VSAI Sbjct 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSAVSAI 130 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYIRALAR Sbjct 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIRALAR 190 Query 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 DLG AL VGGH+T+LRRTRV F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct 191 DLGAALDVGGHLTSLRRTRVSHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 Query 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 >gi|336459008|gb|EGO37960.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp. paratuberculosis S397] Length=293 Score = 434 bits (1116), Expect = 8e-120, Method: Compositional matrix adjust. Identities = 219/290 (76%), Positives = 253/290 (88%), Gaps = 0/290 (0%) Query 6 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 65 PG+VV+DKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query 66 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 125 A KSY+ATIRLGQ TST+DAEG V +SV A+HLT +AI+AA+ LRG+I QVPS+VSAIK Sbjct 64 AAKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query 126 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 185 V G+RAY+L R+G++V+L ARP+RIDRFE+ R +D+DVE+DCSSGTY+RALARD Sbjct 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARD 183 Query 186 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAE 245 LG ALGVGGH+T LRRTRVGRF L+QA LD+LAE P LS SLDEACLL+F RRDL+A E Sbjct 184 LGAALGVGGHLTPLRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADE 243 Query 246 ASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A AA NGR+L A GIDGVYAAC DGRVIALLRDEG+RT+SV VLRPAT+ Sbjct 244 AEAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTKSVVVLRPATL 293 >gi|254821335|ref|ZP_05226336.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC 13950] Length=301 Score = 434 bits (1115), Expect = 9e-120, Method: Compositional matrix adjust. Identities = 228/298 (77%), Positives = 263/298 (89%), Gaps = 3/298 (1%) Query 4 TGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLL 63 +GPGIVV+DKP MTSHDVVGRCRRIF+TRRVGHAGTLDPMATGVLVIG+ERATKILGLL Sbjct 2 SGPGIVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLL 61 Query 64 TAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSA 123 +A+ KSYAATIRLGQ+TST+DAEG+ + SVPA HLT EAI+ A+E LRG+I QVPS+VSA Sbjct 62 SASSKSYAATIRLGQSTSTDDAEGEPVHSVPAGHLTAEAIETAVEGLRGDIAQVPSTVSA 121 Query 124 IKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAAR---RRDQLIDIDVEIDCSSGTYIR 180 IKVGG+RAYRLAR+G +V+LEARP+RIDRF++ R ++D+DVE+DCSSGTYIR Sbjct 122 IKVGGKRAYRLAREGHAVELEARPVRIDRFDVRDIRPGPHGLDVLDVDVEVDCSSGTYIR 181 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLG ALGVGGH+TALRRTR GRF LDQA SLD+LAERP LS SLDEACLL+F RR+ Sbjct 182 ALARDLGAALGVGGHLTALRRTRAGRFGLDQAYSLDELAERPRLSYSLDEACLLIFPRRE 241 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 L+A EA AAANGRSLPA GIDGVYAACD +GRV+ALLRDEG+RT+SV V+RPATM G Sbjct 242 LSAGEADAAANGRSLPAAGIDGVYAACDPEGRVMALLRDEGARTKSVVVVRPATMQSG 299 >gi|15827813|ref|NP_302076.1| tRNA pseudouridine synthase B [Mycobacterium leprae TN] gi|221230290|ref|YP_002503706.1| tRNA pseudouridine synthase B [Mycobacterium leprae Br4923] gi|13959607|sp|Q9Z5I4.1|TRUB_MYCLE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|4455683|emb|CAB36580.1| possible tRNA pseudouridine synthase B [Mycobacterium leprae] gi|13093365|emb|CAC30497.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae] gi|219933397|emb|CAR71641.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae Br4923] Length=320 Score = 431 bits (1107), Expect = 8e-119, Method: Compositional matrix adjust. Identities = 217/293 (75%), Positives = 249/293 (85%), Gaps = 5/293 (1%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 GPGIVVIDKP+GMTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++RATKILGLL Sbjct 11 GPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLA 70 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 A K Y ATIRLGQTTSTEDAEG++LQ V A+H+T EAI A+ RLRG+I+QVPS+VSAI Sbjct 71 GASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAI 130 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-----LIDIDVEIDCSSGTYI 179 KV GRRAYRL R+G V+L+ARP+RIDRFE+LA R + +ID+DVE++CSSGTYI Sbjct 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190 Query 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239 RALARDLGDA GVGGH+T+LRRTRVGRFELDQA SL+DLAE P LS +LDE CLLMF RR Sbjct 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETCLLMFPRR 250 Query 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292 DLT +E A +NGR + + GIDG+YAA DADGRVIALLRDEG RT+SV VL P Sbjct 251 DLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVVLHP 303 >gi|120403320|ref|YP_953149.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1] gi|119956138|gb|ABM13143.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1] Length=302 Score = 426 bits (1096), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 214/290 (74%), Positives = 249/290 (86%), Gaps = 0/290 (0%) Query 6 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 65 PG+VV+DKP GMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLV+GIERATKILGLLTA Sbjct 13 PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTA 72 Query 66 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 125 KSYAATIRLGQTTSTEDAEG+VLQSV A +T I+AA+ LRG I Q+PS+VSAIK Sbjct 73 TDKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRGPIDQIPSAVSAIK 132 Query 126 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 185 + G+RAY++ R G++V+L ARP+RIDRFE+L RR +L+D+DV +DCSSGTYIRALARD Sbjct 133 IAGKRAYQMVRDGQTVELAARPVRIDRFEVLEVRRDGELVDVDVAVDCSSGTYIRALARD 192 Query 186 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAE 245 +G ALGVGGH+TALRRTRVG F L+QAR+LD+LAE P LS SLDEACL FARRD+T AE Sbjct 193 VGAALGVGGHLTALRRTRVGGFGLEQARTLDELAEAPRLSYSLDEACLRAFARRDITEAE 252 Query 246 ASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A +A++GR+LP GIDGVYAA DGRVIALL DEG RTRSV VLRPAT+ Sbjct 253 AESASHGRALPVAGIDGVYAATAPDGRVIALLSDEGDRTRSVVVLRPATL 302 >gi|254776117|ref|ZP_05217633.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp. avium ATCC 25291] Length=284 Score = 415 bits (1066), Expect = 5e-114, Method: Compositional matrix adjust. Identities = 211/282 (75%), Positives = 244/282 (87%), Gaps = 0/282 (0%) Query 17 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRL 76 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLV+G+ERATKILGLLTAA KSY+ATIRL Sbjct 1 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAAKSYSATIRL 60 Query 77 GQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLAR 136 GQ TST+DAEG V++SV A+HLT +AI+AA+ LRG+I QVPS+VSAIKV G+RAY+L R Sbjct 61 GQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKVAGKRAYKLVR 120 Query 137 QGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHV 196 +G++V+L ARP+RIDRFE+ R + +D+DVE+DCSSGTY+RALARDLG ALGVGGH+ Sbjct 121 EGQAVELPARPVRIDRFEVRDVRAAGECVDVDVEVDCSSGTYVRALARDLGAALGVGGHL 180 Query 197 TALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLP 256 TALRRTRVGRF L+QA LD+LAE P LS LDEACLL+F RRDL+A EA AA NGR+L Sbjct 181 TALRRTRVGRFGLEQAYGLDELAECPRLSYGLDEACLLIFGRRDLSADEAEAAGNGRALA 240 Query 257 AVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATMHPG 298 A IDGVYAAC DGRVIALLRDEG+RTRSV V+RPATM G Sbjct 241 AARIDGVYAACAPDGRVIALLRDEGARTRSVVVIRPATMQDG 282 >gi|118464111|ref|YP_882859.1| tRNA pseudouridine synthase B [Mycobacterium avium 104] gi|189036542|sp|A0QIX1.1|TRUB_MYCA1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|118165398|gb|ABK66295.1| tRNA pseudouridine synthase B [Mycobacterium avium 104] Length=309 Score = 413 bits (1061), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 222/304 (74%), Positives = 257/304 (85%), Gaps = 11/304 (3%) Query 6 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 65 PG+VV+DKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query 66 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 125 A KSY+ATIRLGQ TST+DAEG V++SV A+HLT +AI+AA+ LRG+I QVPS+VSAIK Sbjct 64 AAKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query 126 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 185 V G+RAY+L R+G++V+L ARP+RIDRFE+ R + +D+DVE+DCSSGTY+RALARD Sbjct 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARD 183 Query 186 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAE 245 LG ALGVGGH+TALRRTRVGRF L+QA LD+LAE P LS SLDEACLL+F RRDL+A E Sbjct 184 LGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADE 243 Query 246 AS-----------AAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPAT 294 A AA NGR+L A GIDGVYAAC DGRVIALLRDEG+RTRSV V+RPAT Sbjct 244 AEAAGNGRALAAAAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTRSVVVIRPAT 303 Query 295 MHPG 298 M G Sbjct 304 MQDG 307 >gi|333991189|ref|YP_004523803.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601] gi|333487157|gb|AEF36549.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601] Length=292 Score = 411 bits (1057), Expect = 6e-113, Method: Compositional matrix adjust. Identities = 208/290 (72%), Positives = 240/290 (83%), Gaps = 0/290 (0%) Query 6 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 65 PG+VV+DKPAG+TSHDVV RCRR F TR+VGHAGTLDPMATGVLV+GIERATKILGLLT Sbjct 3 PGLVVVDKPAGITSHDVVARCRRFFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTT 62 Query 66 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 125 + KSYAATIRLGQTTSTEDAEG+VLQ+V A HLT I A+ LRG+I QVPS+VSAIK Sbjct 63 SSKSYAATIRLGQTTSTEDAEGEVLQTVSADHLTDSQIAEAIAGLRGDIAQVPSAVSAIK 122 Query 126 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 185 V G+R+Y+LAR+G +V+L ARP+RI+RFELL ARR ID+DVE+DCS+GTYIRALARD Sbjct 123 VSGKRSYQLAREGNAVELPARPVRIERFELLDARRAGDFIDLDVEVDCSAGTYIRALARD 182 Query 186 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAE 245 LGD LGVGGH+TALRRTR G F LDQAR+L++L E P LS SLDEACL F RR L+A E Sbjct 183 LGDELGVGGHLTALRRTRAGSFGLDQARTLEELGENPRLSYSLDEACLQTFPRRALSADE 242 Query 246 ASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A ++GR L GIDGVYAA DGRVIALL D G RT+SV V+RPAT+ Sbjct 243 ALDVSHGRPLTPAGIDGVYAAAAPDGRVIALLEDSGKRTKSVVVIRPATL 292 >gi|342858341|ref|ZP_08714996.1| tRNA pseudouridine synthase B [Mycobacterium colombiense CECT 3035] gi|342134045|gb|EGT87225.1| tRNA pseudouridine synthase B [Mycobacterium colombiense CECT 3035] Length=279 Score = 399 bits (1024), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 210/279 (76%), Positives = 245/279 (88%), Gaps = 0/279 (0%) Query 17 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRL 76 MTSHDVVGRCRRIF+TRRVGHAGTLDPMATGVLVIG+ERATKILGLLTA KSY ATIRL Sbjct 1 MTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLTATAKSYTATIRL 60 Query 77 GQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLAR 136 GQ+TST+DAEG++++SV A+HLT EA+++AM LRG+I QVPS+VSAIKV G+RAYRLAR Sbjct 61 GQSTSTDDAEGELVRSVSARHLTGEAVESAMGGLRGDIEQVPSTVSAIKVDGKRAYRLAR 120 Query 137 QGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHV 196 +G++V+L+ARP+RIDRFE+ R RD ++D+DVE+DCSSGTYIRALARDLGDALGVGGH+ Sbjct 121 EGQTVELKARPVRIDRFEVRDIRYRDDVVDLDVEVDCSSGTYIRALARDLGDALGVGGHL 180 Query 197 TALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLP 256 TALRRT VGRF LDQA LD+LAE P LS SLDEACLL+F RRDL+AAEA A +GR L Sbjct 181 TALRRTSVGRFGLDQAHQLDELAEHPRLSYSLDEACLLIFPRRDLSAAEAEATGHGRPLG 240 Query 257 AVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 GIDG YAACD GRV+ALLRDEGSRT+ V V+RPAT+ Sbjct 241 PAGIDGTYAACDPAGRVMALLRDEGSRTKPVVVIRPATL 279 >gi|169630198|ref|YP_001703847.1| tRNA pseudouridine synthase B [Mycobacterium abscessus ATCC 19977] gi|254764886|sp|B1MD72.1|TRUB_MYCA9 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|169242165|emb|CAM63193.1| tRNA pseudouridine synthase B (TruB) [Mycobacterium abscessus] Length=298 Score = 396 bits (1017), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 206/290 (72%), Positives = 240/290 (83%), Gaps = 1/290 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+V++DKPAGMTSHDVV RCRRIF+TR+VGHAGTLDPMATGVLVIGIERATKI+GLLT Sbjct 9 GLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLT 68 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSYAATIR GQ+TST+DAEG+VLQ++ A HLT I+AA+ LRG+I QVPSSVSAIKV Sbjct 69 TKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAAR-RRDQLIDIDVEIDCSSGTYIRALARD 185 G+RAY+LAR+G+SV+L ARP+RI RF++LA R + LID+DVEIDCSSGTYIRALARD Sbjct 129 DGQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEIDCSSGTYIRALARD 188 Query 186 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAE 245 G ALGVGGH+TALRRTRVG F LD+AR+L++LA+ L+L LD AC F RRDL AAE Sbjct 189 AGAALGVGGHLTALRRTRVGDFGLDRARTLEELADGATLTLDLDSACRQGFPRRDLDAAE 248 Query 246 ASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A NGR L GI+G YAA DAD RVIALL D+GSRT SV VLRPA + Sbjct 249 VDAVRNGRPLAPAGIEGTYAAVDADDRVIALLADKGSRTTSVVVLRPANL 298 >gi|108799062|ref|YP_639259.1| tRNA pseudouridine synthase B [Mycobacterium sp. MCS] gi|119868177|ref|YP_938129.1| tRNA pseudouridine synthase B [Mycobacterium sp. KMS] gi|126434665|ref|YP_001070356.1| tRNA pseudouridine synthase B [Mycobacterium sp. JLS] 6 more sequence titles Length=297 Score = 392 bits (1008), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 202/284 (72%), Positives = 234/284 (83%), Gaps = 0/284 (0%) Query 12 DKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYA 71 DKPAGMTSHDVVGRCRRIF TR+VGHAGTLDPMATGVLV+GI+RATK+LGLLTA KSY Sbjct 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73 Query 72 ATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRA 131 ATIRLGQTT+TEDAEG V+++ PA +T E I A+ LRGEI QVPS+VSAIKVGG+RA Sbjct 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKVGGQRA 133 Query 132 YRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALG 191 Y+LAR+G++V+L AR +RIDRFE+LA RR D +D+DV +DCSSGTYIRALARD+G LG Sbjct 134 YKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYIRALARDVGVTLG 193 Query 192 VGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAAN 251 VGGH+T LRRTRVGRF LD+A LD LA+ P LS SLDEACLL F RRDLT AEA + + Sbjct 194 VGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLLSFPRRDLTPAEAESTRH 253 Query 252 GRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 GR+L GIDGVYAA DG V+ALL D RT+SV VLRPAT+ Sbjct 254 GRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRPATL 297 >gi|118472061|ref|YP_886986.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2 155] gi|118173348|gb|ABK74244.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2 155] Length=303 Score = 388 bits (997), Expect = 5e-106, Method: Compositional matrix adjust. Identities = 208/297 (71%), Positives = 246/297 (83%), Gaps = 3/297 (1%) Query 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 S PG+V++DKPAGMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKILG Sbjct 7 SGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILG 66 Query 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 LLTA KSYAATIRLG+TT+TEDAEG+V++ VPA+ +T E I AA+ LRG+I QVPS+V Sbjct 67 LLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAV 126 Query 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARR---RDQLIDIDVEIDCSSGTY 178 SAIKVGG+RAY+LAR+G+SV+L ARP+RIDRF++L RR +D+DVE+DCSSGTY Sbjct 127 SAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRPDDFPDFVDVDVEVDCSSGTY 186 Query 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 IRALARD+G ALGVGGH+T LRRTRVGR+ LD+A +LD+LAE P LS SLD ACL+ F R Sbjct 187 IRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGFPR 246 Query 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 RDL+A E +GR L GIDGVYAA DGRVIALL+D RTR+V VLRPAT+ Sbjct 247 RDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 >gi|315444939|ref|YP_004077818.1| tRNA pseudouridine synthase B [Mycobacterium sp. Spyr1] gi|315263242|gb|ADT99983.1| tRNA pseudouridine synthase B [Mycobacterium sp. Spyr1] Length=294 Score = 387 bits (994), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 206/295 (70%), Positives = 241/295 (82%), Gaps = 1/295 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSA PG+VV+DKP GMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLV+GIERATKIL Sbjct 1 MSAE-PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKIL 59 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTA KSY AT+RLGQTTSTEDAEG++L V A +T E I+ A+ LRG I QVPS+ Sbjct 60 GLLTATDKSYTATLRLGQTTSTEDAEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSA 119 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIK+ G+RAY++ R G V++ ARP+RIDRFE+LA RR ++D+DV +DCSSGTYIR Sbjct 120 VSAIKIAGKRAYQMVRDGEQVEIPARPVRIDRFEVLAVRRNGDVVDVDVVVDCSSGTYIR 179 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARD+G ALGVGGH+TALRRTRVG F LDQAR+L+ LA+ LS SLDEACL F RR+ Sbjct 180 ALARDVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSYSLDEACLHAFPRRE 239 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 LTAAE A +GRSL GIDGVYAA DGRV+ALL D G+RTRSV V+RPAT+ Sbjct 240 LTAAEVVDAGHGRSLAPAGIDGVYAATAPDGRVMALLEDAGTRTRSVVVIRPATL 294 >gi|145224608|ref|YP_001135286.1| tRNA pseudouridine synthase B [Mycobacterium gilvum PYR-GCK] gi|145217094|gb|ABP46498.1| tRNA pseudouridine synthase B [Mycobacterium gilvum PYR-GCK] Length=294 Score = 383 bits (984), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 205/295 (70%), Positives = 238/295 (81%), Gaps = 1/295 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSA PG+VV+DKP GMTSHDVVGRCRR+F TR+VGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSAE-PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKIL 59 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTA KSY AT+RLGQTTSTED EG++L V A +T E I+ A+ LRG I QVPS+ Sbjct 60 GLLTATDKSYTATLRLGQTTSTEDTEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSA 119 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIK+ G+RAY++ R G V++ ARP+RIDRFE+LA RR ++D+DV +DCSSGTYIR Sbjct 120 VSAIKIAGKRAYQMVRDGEQVEIPARPVRIDRFEVLAVRRNGDVVDVDVVVDCSSGTYIR 179 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARD+G ALGVGGH+TALRRTRVG F LDQAR+L+ LA+ LS SLDEACL F RR+ Sbjct 180 ALARDVGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSYSLDEACLHAFPRRE 239 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 LT AE A +GRSL GIDGVYAA DGRV+ALL D G RTRSV V+RPAT+ Sbjct 240 LTDAEVVDAGHGRSLAPAGIDGVYAATAPDGRVMALLEDAGPRTRSVVVIRPATL 294 >gi|289444341|ref|ZP_06434085.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis T46] gi|289417260|gb|EFD14500.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis T46] Length=178 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 178/178 (100%), Positives = 178/178 (100%), Gaps = 0/178 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL Sbjct 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS Sbjct 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTY 178 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTY Sbjct 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTY 178 >gi|312139336|ref|YP_004006672.1| pseudouridylate synthase [Rhodococcus equi 103S] gi|311888675|emb|CBH47987.1| putative pseudouridylate synthase [Rhodococcus equi 103S] Length=308 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 173/297 (59%), Positives = 223/297 (76%), Gaps = 8/297 (2%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G G++++DK AGMTSHDVV RCR++ TR+VGHAGTLDPMATGVL++G+ERATK+LGLL Sbjct 13 GAGLLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLA 72 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 KSY+ATIRLGQ T+T+DAEG+VL +V A +T E I A + +L G+I+QVP+SVSAI Sbjct 73 LTTKSYSATIRLGQATTTDDAEGEVLTTVDASAVTDEQIAAEIAKLTGDIQQVPASVSAI 132 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRD------QLIDIDVEIDCSSGTY 178 KV G+RA+ L R G V L ARP+ + RF++LA RRD +D+DV++DCSSGTY Sbjct 133 KVDGQRAHALIRAGEEVTLAARPVTVSRFDVLA--RRDVPGDSGGFVDLDVDVDCSSGTY 190 Query 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 IRALARDLG ALGVGGH+TALRRT VG F L+ AR+L+ LAE PA+SL +D+A F Sbjct 191 IRALARDLGAALGVGGHLTALRRTSVGPFTLEHARTLEQLAEDPAVSLDIDQAAQTAFPH 250 Query 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 R ++AAEA + + GR L +G +YAA D G IAL+++ G R SV V+RPAT+ Sbjct 251 RQISAAEAESISQGRWLEPIGRKEIYAAIDPSGHTIALIQERGKRASSVMVVRPATL 307 >gi|326382951|ref|ZP_08204641.1| tRNA pseudouridine synthase B [Gordonia neofelifaecis NRRL B-59395] gi|326198541|gb|EGD55725.1| tRNA pseudouridine synthase B [Gordonia neofelifaecis NRRL B-59395] Length=299 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 170/294 (58%), Positives = 218/294 (75%), Gaps = 0/294 (0%) Query 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 S G++V+DK A MTSHDVV +CR+ F TRRVGHAGTLDPMATGVLVIGIERATK+LG Sbjct 5 SIENAGLLVVDKAADMTSHDVVAKCRKAFNTRRVGHAGTLDPMATGVLVIGIERATKLLG 64 Query 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 LL+ KSYAATIRLGQ+TST+DAEG+V++S A + E I A + L G+I QVP+ V Sbjct 65 LLSLTTKSYAATIRLGQSTSTDDAEGEVIESRDASGVGDEEIAAVVASLTGDIEQVPAKV 124 Query 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRA 181 SAIKV GRRA+ L R G +L+ARP+ + RF++L RR + ID+DVE+DCSSGTYIR+ Sbjct 125 SAIKVDGRRAHALVRTGAEFELQARPVTVHRFDVLDTRRDGEFIDLDVEVDCSSGTYIRS 184 Query 182 LARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDL 241 LARDLG ALGVGGH+T LRRT VG F L+ +R++ D+ E P LSL +D+A L F R + Sbjct 185 LARDLGAALGVGGHLTVLRRTAVGPFTLEHSRTMADVDENPGLSLGIDDAAKLCFPHRAI 244 Query 242 TAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 + EA + + GR L VG+ G+Y D G+ IAL++++G R SV V+RPAT+ Sbjct 245 SDDEAESISQGRWLEPVGMKGIYTVVDPSGQAIALVQEKGRRASSVMVVRPATL 298 >gi|325672785|ref|ZP_08152481.1| tRNA pseudouridine synthase B [Rhodococcus equi ATCC 33707] gi|325556662|gb|EGD26328.1| tRNA pseudouridine synthase B [Rhodococcus equi ATCC 33707] Length=308 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 171/297 (58%), Positives = 221/297 (75%), Gaps = 8/297 (2%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G G++++DK AGMTSHDVV RCR++ TR+VGHAGTLDPMATGVL++G+ERATK+LGLL Sbjct 13 GAGLLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLA 72 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 KSY+ATIRLGQ T+T+DAEG+VL + A +T E I A + +L G+I+QVP+SVSAI Sbjct 73 LTTKSYSATIRLGQATTTDDAEGEVLTTADASAVTDEQIAAEIAKLTGDIQQVPASVSAI 132 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRD------QLIDIDVEIDCSSGTY 178 KV G+RA+ L R G V L ARP+ + RF++LA RRD +D+DV++DCSSGTY Sbjct 133 KVDGQRAHALIRAGEEVTLAARPVTVSRFDVLA--RRDVPGDSGGFVDLDVDVDCSSGTY 190 Query 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 IRALARDLG ALGVGGH+TALRRT VG F L+ AR+L+ L E PA+SL +D+A F Sbjct 191 IRALARDLGAALGVGGHLTALRRTSVGPFTLEHARTLEQLTEDPAVSLDIDQAAQTAFPH 250 Query 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 R ++AAEA + + GR L +G +YAA D G IAL+++ G R SV V+RPAT+ Sbjct 251 RQISAAEAESISQGRWLEPIGRKEIYAAIDPSGHTIALIQERGKRASSVMVVRPATL 307 >gi|111023610|ref|YP_706582.1| tRNA pseudouridine synthase B [Rhodococcus jostii RHA1] gi|123339645|sp|Q0S212.1|TRUB_RHOSR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|110823140|gb|ABG98424.1| pseudouridylate synthase [Rhodococcus jostii RHA1] Length=305 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 167/292 (58%), Positives = 214/292 (74%), Gaps = 1/292 (0%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G G++++DK AG+TSHDVV RCR++ TR+VGHAGTLDPMATGVLV+G+ERATK+LG L Sbjct 13 GAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGFLA 72 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 K+Y ATIRLGQ T+T+DAEG+V+ S A +T E I A + L G+I+Q+PSSVSAI Sbjct 73 LTTKAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAI 132 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 KV GRRA+ L R G +L R + + RFE++A R +D+DVE++CSSGTY+RALAR Sbjct 133 KVDGRRAHALIRAGEEFELAPRSVTVSRFEVVARRTEGAFVDVDVEVECSSGTYVRALAR 192 Query 185 DLGDAL-GVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTA 243 DLG AL GVGGH+T+LRRTRVG F L+ AR+L+ LAE P +SL +D A F R + A Sbjct 193 DLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDAAAQTAFPHRQVDA 252 Query 244 AEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 EA + + GR L +GI GVYAA D G IALL++ G R SV V+RPAT+ Sbjct 253 DEAESISQGRWLEPIGIKGVYAAIDPSGHTIALLQERGRRASSVMVVRPATL 304 >gi|226306126|ref|YP_002766086.1| tRNA pseudouridine synthase TruB [Rhodococcus erythropolis PR4] gi|226185243|dbj|BAH33347.1| tRNA pseudouridine synthase TruB [Rhodococcus erythropolis PR4] Length=306 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 168/294 (58%), Positives = 220/294 (75%), Gaps = 5/294 (1%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G GI+++DK AG+TSHDVV RCR++ TR+VGHAGTLDPMATGVLV+G+ERATK+LGLL Sbjct 13 GAGILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 72 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 K+Y+ATIRLG T T+DAEG+VL S A +T I A + L G+I+Q+P+SVSAI Sbjct 73 LTTKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAI 132 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRD---QLIDIDVEIDCSSGTYIRA 181 KV G+RA+ L R G +V+L RP+ + FE+LA RRD +D+DV+++CSSGTYIR+ Sbjct 133 KVDGQRAHALVRAGETVELAPRPVTVSTFEVLA--RRDVPGGFVDLDVDVECSSGTYIRS 190 Query 182 LARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDL 241 LARDLG LGVGGH+TALRRTRVG F L+ AR+L+DLA++P +SL +D+A F R + Sbjct 191 LARDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLADQPGVSLDIDQAAQTAFPHRQI 250 Query 242 TAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 TA EA A + GR L +G+ G+ AA D G IALL+++G R SV V+RPAT+ Sbjct 251 TAEEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVRPATL 304 >gi|229490936|ref|ZP_04384771.1| tRNA pseudouridine synthase B [Rhodococcus erythropolis SK121] gi|229322326|gb|EEN88112.1| tRNA pseudouridine synthase B [Rhodococcus erythropolis SK121] Length=306 Score = 328 bits (840), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 168/294 (58%), Positives = 219/294 (75%), Gaps = 5/294 (1%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G GI+++DK AG+TSHDVV RCR++ TR+VGHAGTLDPMATGVLV+G+ERATK+LGLL Sbjct 13 GAGILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 72 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 K+Y+ATIRLG T T+DAEG+VL S A +T I A + L G+I+Q+P+SVSAI Sbjct 73 LTTKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAI 132 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRD---QLIDIDVEIDCSSGTYIRA 181 KV G+RA+ L R G +V+L RP+ + FE+LA RRD +D+DV+++CSSGTYIR+ Sbjct 133 KVDGQRAHALVRAGETVELAPRPVTVSTFEVLA--RRDVPGGFVDLDVDVECSSGTYIRS 190 Query 182 LARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDL 241 LARDLG LGVGGH+TALRRTRVG F L+ AR+L+DLA +P +SL +D+A F R + Sbjct 191 LARDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLAHQPGVSLDIDQAAQTAFPHRQI 250 Query 242 TAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 TA EA A + GR L +G+ G+ AA D G IALL+++G R SV V+RPAT+ Sbjct 251 TAEEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVRPATL 304 >gi|226366099|ref|YP_002783882.1| tRNA pseudouridine synthase B [Rhodococcus opacus B4] gi|226244589|dbj|BAH54937.1| tRNA pseudouridine synthase TruB [Rhodococcus opacus B4] Length=305 Score = 324 bits (831), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 165/292 (57%), Positives = 214/292 (74%), Gaps = 1/292 (0%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G G++++DK AG+TSHDVV RCR++ TR+VGHAGTLDPMATGVLV+G+ERATK+LGLL Sbjct 13 GAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 72 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 K+Y ATIRLGQ T+T+DAEG+++ S A + E I A + L G+I+Q+PSSVSAI Sbjct 73 LTTKAYTATIRLGQATTTDDAEGEIVASADASGVRDEEIAAQVRTLTGDIQQIPSSVSAI 132 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 KV GRRA+ L R G +L R + + RF+++A R +D+DVE++CSSGTY+RALAR Sbjct 133 KVDGRRAHALIRAGEEFELAPRSVTVSRFDVVARRTEGPFVDLDVEVECSSGTYVRALAR 192 Query 185 DLGDAL-GVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTA 243 DLG AL GVGGH+T+LRRTRVG F L+ AR+L+ LAE P +SL +D A F R + A Sbjct 193 DLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDSAAQTAFPHRQIDA 252 Query 244 AEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 EA A + GR L +G+ GVYAA D G IALL++ G R SV V+RPAT+ Sbjct 253 DEAEAISQGRWLEPIGMKGVYAAIDPSGHTIALLQERGKRASSVMVVRPATL 304 >gi|296139441|ref|YP_003646684.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM 20162] gi|296027575|gb|ADG78345.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM 20162] Length=297 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 168/289 (59%), Positives = 212/289 (74%), Gaps = 0/289 (0%) Query 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 G G++++DKPAG+TSHDVV RCRR TR+VGHAGTLDPMATGVLVIGIERATK+LG L Sbjct 8 GAGLIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLA 67 Query 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 K+Y+AT+RLG +TST+DAEG++ A L+ + AAM L G+I QVPS+VSAI Sbjct 68 LTTKAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAI 127 Query 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 KV G+RA++L R+G VQL ARP+R+D F A RR +D+DV ++CSSGTY+RALAR Sbjct 128 KVDGKRAHQLVREGADVQLTARPVRVDEFAAHAFRRDGDFLDVDVHVECSSGTYVRALAR 187 Query 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 DLG ALGVGGH+TALRRTRVG + LD A +LD+L E P LS +D A FA R++T Sbjct 188 DLGAALGVGGHLTALRRTRVGPYGLDLAVTLDELFETPRLSYDIDAAIATGFAVREITDE 247 Query 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPA 293 +A + GR L +G+ GVYAA GR IALL + G+R SV V+RP+ Sbjct 248 QAVDLSLGRWLDPIGMPGVYAAVAPGGRAIALLEESGNRASSVFVVRPS 296 >gi|343927046|ref|ZP_08766534.1| tRNA pseudouridine synthase B [Gordonia alkanivorans NBRC 16433] gi|343763104|dbj|GAA13460.1| tRNA pseudouridine synthase B [Gordonia alkanivorans NBRC 16433] Length=306 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 166/296 (57%), Positives = 218/296 (74%), Gaps = 7/296 (2%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G++++DK AG+TSHDVV RCR+IF TRRVGHAGTLDPMATGVLV+GIERATK+LGLL+ Sbjct 10 GLLIVDKQAGITSHDVVSRCRKIFDTRRVGHAGTLDPMATGVLVVGIERATKLLGLLSLT 69 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSY ATIRLG +T+T+D EG++L + A +T + I + + L G+I+QVP+ VSAIKV Sbjct 70 TKSYTATIRLGASTTTDDREGEILTTADASGVTDDEIASGVADLTGDIQQVPAKVSAIKV 129 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ-------LIDIDVEIDCSSGTYI 179 GRRA+ L R G LEARP+ + RF++LA RR ++D+DV +DCSSGTYI Sbjct 130 DGRRAHALVRTGADFDLEARPVTVSRFDVLAIRRDGDTDNGTPGVVDLDVAVDCSSGTYI 189 Query 180 RALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARR 239 R+LARDLG ALGVGGH+TALRRT VG F L+ AR+LD++ E +SL +DEA L F RR Sbjct 190 RSLARDLGAALGVGGHLTALRRTAVGPFTLEHARTLDEVREDGRVSLDIDEAVKLSFPRR 249 Query 240 DLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 D++ EA + + GR L +G+ GVY D + IAL++++G R SV V+RPAT+ Sbjct 250 DISDDEAESISQGRWLEPIGMKGVYVVVDPHEQAIALIQEKGKRASSVMVVRPATL 305 >gi|262202092|ref|YP_003273300.1| tRNA pseudouridine synthase B [Gordonia bronchialis DSM 43247] gi|262085439|gb|ACY21407.1| tRNA pseudouridine synthase B [Gordonia bronchialis DSM 43247] Length=299 Score = 321 bits (823), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 163/294 (56%), Positives = 212/294 (73%), Gaps = 0/294 (0%) Query 2 SATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILG 61 S G++++DK AG+TSHDVV RCR+IF TRRVGHAGTLDPMATGVLVIGIERATK+LG Sbjct 5 SIENAGLLIVDKQAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGIERATKLLG 64 Query 62 LLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSV 121 LL+ KSY ATIRLG T+T+D EG+++ S A +T E I + + L G+I QVP+ V Sbjct 65 LLSLTTKSYEATIRLGAATTTDDLEGEIIASADASAVTDEQIHSVVAGLTGDIEQVPAKV 124 Query 122 SAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRA 181 SAIKV GRRA+ L R G L ARP+ + RF+++ RR +D+DV +DCS+GTYIR+ Sbjct 125 SAIKVDGRRAHALVRTGAEFDLAARPVTVRRFDVVDTRRDGHFVDLDVVVDCSAGTYIRS 184 Query 182 LARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDL 241 LARDLG LGVGGH+TALRRT VG F L+ A +LD++ ERP +SL +DEA + F RD+ Sbjct 185 LARDLGAELGVGGHLTALRRTAVGPFTLEHALTLDEVRERPHVSLDIDEAVKISFPHRDI 244 Query 242 TAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 EA + + GR L +G+ G+Y D R IAL++++G R SV V+RPAT+ Sbjct 245 DDDEAESISQGRWLDPIGMKGIYMVVDPAQRAIALVQEKGRRASSVMVVRPATL 298 >gi|333919299|ref|YP_004492880.1| tRNA pseudouridine synthase B [Amycolicicoccus subflavus DQS3-9A1] gi|333481520|gb|AEF40080.1| tRNA pseudouridine synthase B [Amycolicicoccus subflavus DQS3-9A1] Length=295 Score = 321 bits (822), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 172/295 (59%), Positives = 208/295 (71%), Gaps = 1/295 (0%) Query 1 MSATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKIL 60 M A G G+VVIDKP G+TSHDVVGRCRRIF TR++GHAGTLDPMATGVLV+G+ RATK+L Sbjct 1 MDALG-GVVVIDKPGGLTSHDVVGRCRRIFKTRKIGHAGTLDPMATGVLVLGVNRATKLL 59 Query 61 GLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSS 120 GLL+ + KSY ATIRLG +TST+DAEG V S A +T +E L G I+QVPS+ Sbjct 60 GLLSLSTKSYDATIRLGASTSTDDAEGDVTSSADASLITANEYGPTVEALTGTIKQVPSA 119 Query 121 VSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIR 180 VSAIKV GRRAY + R G V+L AR + + RF + R +D+DV +DCSSGTYIR Sbjct 120 VSAIKVAGRRAYDIVRSGEEVELAAREVIVSRFAVHGEHRDGGYLDLDVTVDCSSGTYIR 179 Query 181 ALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRD 240 ALARDLG ALGVGGH+T LRRT VG L A +LD+LAE P LSLSLDEA +F R Sbjct 180 ALARDLGAALGVGGHLTRLRRTNVGDLSLTDALTLDELAEVPKLSLSLDEAASRLFPVRL 239 Query 241 LTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 ++ +EA +GR L GI GVYAA G+ IALL + G R V V+RP+ + Sbjct 240 ISDSEAGVLRHGRWLEPTGIGGVYAAVAESGQAIALLEERGRRASPVFVIRPSGL 294 >gi|311739671|ref|ZP_07713506.1| tRNA pseudouridine synthase B [Corynebacterium pseudogenitalium ATCC 33035] gi|311305487|gb|EFQ81555.1| tRNA pseudouridine synthase B [Corynebacterium pseudogenitalium ATCC 33035] Length=297 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 163/289 (57%), Positives = 212/289 (74%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+V++DKPAGMTSHDVVGR RR F T++VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct 9 GLVIVDKPAGMTSHDVVGRLRRYFHTKKVGHAGTLDPMATGVLVLGVERGTKFLAHMVAS 68 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSY ATIRLG T+T+DAEG+ A + AI+A + +L G+I Q P++VSAIK+ Sbjct 69 TKSYDATIRLGAATTTDDAEGEYSWGASAADIDRTAIEAEIAKLTGDIMQKPAAVSAIKI 128 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 GRRA+ L R+G+ V + ARP+ +D+F++LA RR ID+DV +DCSSGTYIR+LARDL Sbjct 129 NGRRAHELVREGQEVDIPARPVTVDKFDVLAERREGDYIDLDVTVDCSSGTYIRSLARDL 188 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+AL VGGH+TALRRT VG F L A SLD LAE P LSLSLDEA F +T EA Sbjct 189 GEALQVGGHLTALRRTEVGPFALADALSLDALAESPRLSLSLDEALARCFPVLSVTEEEA 248 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +A A G+ L G+ GV+AA +G+ +AL++++G R +V V RP+T+ Sbjct 249 AALAMGKWLEPRGLKGVHAAVAPNGQAVALIKEKGKRLATVFVARPSTL 297 >gi|134102366|ref|YP_001108027.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL 2338] gi|133914989|emb|CAM05102.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL 2338] Length=536 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 164/282 (59%), Positives = 206/282 (74%), Gaps = 0/282 (0%) Query 10 VIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKS 69 ++DKPAGMTSHDVV R RRI TR+VGHAGTLDPMATGVLV+G+ERATK+LG L K+ Sbjct 1 MVDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKA 60 Query 70 YAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGR 129 Y ATIRLG T+T+DAEG+VL A + +A+ A + L GE++QVPSSVSA+KV GR Sbjct 61 YLATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKVNGR 120 Query 130 RAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDA 189 RAY +AR G V+L ARP+ + RF++LA RR + ++DV ++CSSGTY+RALARDLG Sbjct 121 RAYEIARSGEQVELAARPVTVSRFDVLALRRAEAATELDVLVECSSGTYVRALARDLGAG 180 Query 190 LGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAA 249 LGVGGH+ ALRRTRVG F L AR+LD L E P LS+ LD A F R D+ A A A Sbjct 181 LGVGGHLAALRRTRVGPFGLATARTLDALEEEPGLSMDLDRAVEAAFRRTDVDTAAARAL 240 Query 250 ANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLR 291 A+G+++PA G+ G Y D DGR IAL+RD+G R ++ A R Sbjct 241 AHGQAVPAAGLKGTYGVFDPDGRAIALVRDQGPRGQTGAGAR 282 >gi|319950922|ref|ZP_08024799.1| tRNA pseudouridine synthase B [Dietzia cinnamea P4] gi|319435415|gb|EFV90658.1| tRNA pseudouridine synthase B [Dietzia cinnamea P4] Length=303 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/289 (62%), Positives = 209/289 (73%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+VV+DKP GM+SHDVVGR RR F TR+VGHAGTLDPMATGVLV+GIERATK+LGLL Sbjct 15 GLVVVDKPGGMSSHDVVGRLRRYFGTRKVGHAGTLDPMATGVLVVGIERATKMLGLLALE 74 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSY ATIRLGQTT+T+DAEG+ + A +T EAIDAA+ L GEI QVPS+VSAIKV Sbjct 75 TKSYEATIRLGQTTTTDDAEGETTSTTDASAVTDEAIDAAVAALTGEIDQVPSAVSAIKV 134 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 GRRAY R G V+L +R + + RF++L R ++D+ V +DCS+GTYIRALARDL Sbjct 135 DGRRAYERVRAGEEVELRSRRVTVSRFDVLERTRSGAVVDLVVVVDCSTGTYIRALARDL 194 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G ALGVGGH+TALRRT VG F LD AR+LD L P LSL LD A L F RRD+ A EA Sbjct 195 GSALGVGGHLTALRRTHVGPFGLDVARTLDQLETDPTLSLDLDSAALTAFPRRDIDADEA 254 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +GR L A G GV AA DGRV AL+ + G R V V+RPA + Sbjct 255 EGLRHGRWLEARGDAGVVAAVGPDGRVAALVSESGRRAAPVVVMRPAGL 303 >gi|306836341|ref|ZP_07469320.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49726] gi|304567776|gb|EFM43362.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49726] Length=300 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 161/289 (56%), Positives = 210/289 (73%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+V++DKPAGMTSHDVV R RR F T++VGHAGTLDPMATGVLV+GIER TK L + A+ Sbjct 12 GLVIVDKPAGMTSHDVVNRLRRYFHTKKVGHAGTLDPMATGVLVLGIERGTKFLAHMVAS 71 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSY+ATIRLG +T+T+DAEG+ PA L AI+A + L GEI Q P++VSAIK+ Sbjct 72 TKSYSATIRLGASTTTDDAEGEFRWGKPAAALHRSAIEAEVAALTGEIMQKPAAVSAIKI 131 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 G+RA+ L R+G+ V + ARP+ + F++ R ID+DV ++CSSGTYIR+LARD+ Sbjct 132 KGKRAHELMREGKEVDIPARPVTVHSFDIHDLRAEGDFIDLDVSVECSSGTYIRSLARDM 191 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+ALGVGGH+TALRRT VG F L A LDDLAE P+LSLSLDEA F +T EA Sbjct 192 GEALGVGGHLTALRRTTVGPFALADAHMLDDLAENPSLSLSLDEALKRSFPVLPVTEDEA 251 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +A A G+ L G+ GV+AA +G+ IAL++++G R +V V RP+T+ Sbjct 252 AALAMGKWLEPRGLSGVHAAVAPNGQAIALIKEKGKRLATVFVARPSTL 300 >gi|54026023|ref|YP_120265.1| tRNA pseudouridine synthase B [Nocardia farcinica IFM 10152] gi|62901242|sp|Q5YSE0.1|TRUB_NOCFA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|54017531|dbj|BAD58901.1| putative tRNA pseudouridine synthase [Nocardia farcinica IFM 10152] Length=306 Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 172/286 (61%), Positives = 214/286 (75%), Gaps = 0/286 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G++V+DK GMTSHDVV RCR+I TR++GHAGTLDPMATGVLV+G+ERATK+LGLLT Sbjct 16 GLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLLTLT 75 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 K+Y ATIRLG T+T+DAEG+VL +VPA HL + A + L G+I+QVP++VSAIK+ Sbjct 76 TKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSAIKI 135 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 GG RAY R G V+L ARP+ + RFE+LA R +D+DV ++CSSGTY+RALARDL Sbjct 136 GGERAYARHRAGEQVELAARPVTVSRFEVLARRDVAGFVDLDVVVECSSGTYVRALARDL 195 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G ALGVGGH+TALRRTRVG F LD AR+LD LA+ P L+L +DEA + F R + A EA Sbjct 196 GAALGVGGHLTALRRTRVGPFTLDHARTLDALADEPRLNLDMDEAVRIAFPHRAIDAREA 255 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRP 292 + +GR L VGI GVYAA ADG IALL ++G R V V+RP Sbjct 256 ESLRDGRWLDPVGIPGVYAALTADGTAIALLEEKGKRASPVFVVRP 301 >gi|227503416|ref|ZP_03933465.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49725] gi|227075919|gb|EEI13882.1| tRNA pseudouridine synthase B [Corynebacterium accolens ATCC 49725] Length=297 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 160/289 (56%), Positives = 210/289 (73%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+V++DKPAGMTSHDVV R RR F T++VGHAGTLDPMATGVLV+GIER TK L + A+ Sbjct 9 GLVIVDKPAGMTSHDVVSRLRRYFHTKKVGHAGTLDPMATGVLVLGIERGTKFLAHMVAS 68 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSY+ATIRLG +T+T+DAEG+ PA L AI+A + L G+I Q P++VSAIK+ Sbjct 69 TKSYSATIRLGASTTTDDAEGEFRWGKPAAALHRSAIEAEVAALTGDIMQKPAAVSAIKI 128 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 G+RA+ L R+G+ V + ARP+ I F++ R +D+DV ++CSSGTYIR+LARD+ Sbjct 129 KGKRAHELVREGKEVDIPARPVTIHSFDIHDLRTEGDFVDLDVSVECSSGTYIRSLARDM 188 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+ALGVGGH+TALRRT VG F L A LDDLAE P+LSLSLDEA F +T EA Sbjct 189 GEALGVGGHLTALRRTTVGPFALADAHMLDDLAENPSLSLSLDEALKRSFPVLPVTEDEA 248 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +A A G+ L G+ GV+AA +G+ IAL++++G R +V V RP+T+ Sbjct 249 AALAMGKWLEPRGLSGVHAAVAPNGQAIALIKEKGKRLATVFVARPSTL 297 >gi|300780971|ref|ZP_07090825.1| tRNA pseudouridine synthase B [Corynebacterium genitalium ATCC 33030] gi|300532678|gb|EFK53739.1| tRNA pseudouridine synthase B [Corynebacterium genitalium ATCC 33030] Length=306 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 162/289 (57%), Positives = 206/289 (72%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 GIVV+DKPAGMTSHDVV + RR F TR+VGHAGTLDPMATGVLV GIER TK+L L A Sbjct 18 GIVVVDKPAGMTSHDVVAQLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVAD 77 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 K YA TIRLG +T+T+DAEG VL A LT E I + L GEI QVPS VSAIK+ Sbjct 78 DKVYATTIRLGASTTTDDAEGDVLAETDASTLTDEQIMEQVTALTGEIMQVPSKVSAIKI 137 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 G+RA+ L R+G+ V + ARP+ + F++ RR +D+D + CSSGTYIR+LARD+ Sbjct 138 DGKRAHELVREGKEVNIPARPVTVFSFDVAGIRREGSFVDVDARVHCSSGTYIRSLARDM 197 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+ LGVGGH+TALRR VG F L+ AR+L+ L + PALSLSLDEA + ++TA E Sbjct 198 GETLGVGGHLTALRREAVGPFTLEHARTLERLEDSPALSLSLDEALTAAWPVLNVTADEF 257 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +A A G+ L G+DGV+AA DGR +AL+R++G R ++ V RP+T+ Sbjct 258 AALAMGKWLEPRGLDGVHAAVGPDGRAVALVREKGKRLSTLFVARPSTL 306 >gi|227833348|ref|YP_002835055.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC 700975] gi|262184334|ref|ZP_06043755.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC 700975] gi|254764883|sp|C3PH13.1|TRUB_CORA7 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|227454364|gb|ACP33117.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC 700975] Length=297 Score = 314 bits (805), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 164/289 (57%), Positives = 205/289 (71%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+VV+DKPAGMTSHDVVG+ RR F TR+VGHAGTLDPMATGVLV+GIER TK L + A+ Sbjct 9 GLVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 K+Y ATIRLG T T+DAEG+ PA + AI + L G+I Q P++VSAIKV Sbjct 69 TKAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKV 128 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 G+RA+ R G V+L ARP+ + RF++LA RR + ID+DV + CSSGTYIR+LARDL Sbjct 129 DGKRAHERVRAGEEVELPARPVTVSRFDILATRREGEFIDLDVSVACSSGTYIRSLARDL 188 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+ALGVGGH+TALRRT VG F LD A LD L + P LSLSLDEA + ++T EA Sbjct 189 GEALGVGGHLTALRRTEVGPFRLDDAHPLDALEDSPELSLSLDEALARSYPVLEVTDEEA 248 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A A G+ L G+ G YAA D GR IAL++++G R +V V RP+T+ Sbjct 249 QALAMGKWLEPRGLKGTYAAVDPQGRSIALIQEKGKRLATVFVARPSTL 297 >gi|227504834|ref|ZP_03934883.1| tRNA pseudouridine synthase B [Corynebacterium striatum ATCC 6940] gi|227198525|gb|EEI78573.1| tRNA pseudouridine synthase B [Corynebacterium striatum ATCC 6940] Length=310 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 164/289 (57%), Positives = 211/289 (74%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+VV+DKP GMTSHDVVGR RRIF TR+VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct 22 GLVVVDKPQGMTSHDVVGRLRRIFHTRKVGHAGTLDPMATGVLVVGLERGTKFLAHMVAS 81 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSYAATIRLG T T+DAEG+ PA L +E ++ + L G+I Q P++VSAIK+ Sbjct 82 TKSYAATIRLGMATHTDDAEGERTWGEPASELDMEQVNKEVAALTGDIMQRPAAVSAIKI 141 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 G+RA+ R+G V++ ARP+ + RF++LA R + +D+DV +DCSSGTYIR+LARDL Sbjct 142 DGKRAHERVREGEEVEIPARPVTVSRFDILAHRIEGKYLDLDVTVDCSSGTYIRSLARDL 201 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+ALGVGGH+TAL RT VG F L AR+LD+LA+ PALSLSLDEA + +T EA Sbjct 202 GEALGVGGHLTALCRTEVGPFTLGDARTLDELADAPALSLSLDEALARSYPVLQVTEDEA 261 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 A A G+ L G+ G YAA D DG IAL++++G R +V V RP+T+ Sbjct 262 KALAMGKWLEPRGLKGTYAAVDPDGHSIALIKEKGKRLATVFVARPSTL 310 >gi|291009320|ref|ZP_06567293.1| hypothetical protein SeryN2_32775 [Saccharopolyspora erythraea NRRL 2338] Length=278 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 162/277 (59%), Positives = 201/277 (73%), Gaps = 0/277 (0%) Query 17 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRL 76 MTSHDVV R RRI TR+VGHAGTLDPMATGVLV+G+ERATK+LG L K+Y ATIRL Sbjct 1 MTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKAYLATIRL 60 Query 77 GQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLAR 136 G T+T+DAEG+VL A + +A+ A + L GE++QVPSSVSA+KV GRRAY +AR Sbjct 61 GAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKVNGRRAYEIAR 120 Query 137 QGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDLGDALGVGGHV 196 G V+L ARP+ + RF++LA RR + ++DV ++CSSGTY+RALARDLG LGVGGH+ Sbjct 121 SGEQVELAARPVTVSRFDVLALRRAEAATELDVLVECSSGTYVRALARDLGAGLGVGGHL 180 Query 197 TALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEASAAANGRSLP 256 ALRRTRVG F L AR+LD L E P LS+ LD A F R D+ A A A A+G+++P Sbjct 181 AALRRTRVGPFGLATARTLDALEEEPGLSMDLDRAVEAAFRRTDVDTAAARALAHGQAVP 240 Query 257 AVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPA 293 A G+ G Y D DGR IAL+RD+G R + V VL PA Sbjct 241 AAGLKGTYGVFDPDGRAIALVRDQGPRAKPVLVLAPA 277 >gi|256379825|ref|YP_003103485.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827] gi|255924128|gb|ACU39639.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827] Length=299 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 159/291 (55%), Positives = 209/291 (72%), Gaps = 0/291 (0%) Query 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGL 62 A PG+VV+DKP GMTSHDVV + RRI TR+VGHAGTLDPMATGVLV+G+ERATK+LG Sbjct 8 AVPPGLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGH 67 Query 63 LTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVS 122 L K+Y +TIRLG +T+T+DAEG+VL S + + +AI A + +L G I+QVPS+VS Sbjct 68 LALDSKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQQVPSAVS 127 Query 123 AIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRAL 182 A+KV G+RAY R G V+L RP+ + RF++L+ RR ++DV ++CSSGTY+RAL Sbjct 128 AVKVDGKRAYARVRAGEEVELPPRPVTVHRFDVLSIRREADATELDVMVECSSGTYVRAL 187 Query 183 ARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLT 242 ARDLG LGVGGH+ ALRRTRVG F+L A++L+ LA+ P LSL LD A F RR++T Sbjct 188 ARDLGVDLGVGGHLAALRRTRVGPFDLRVAKTLEQLADEPGLSLDLDAAVSAAFPRREIT 247 Query 243 AAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPA 293 +E A ++G+ L A G++G Y DG +AL +DEG + V VL PA Sbjct 248 PSEVVALSHGQRLRAGGVEGTYGVFGPDGHAVALAKDEGPLAKPVVVLTPA 298 >gi|255325199|ref|ZP_05366305.1| tRNA pseudouridine synthase B [Corynebacterium tuberculostearicum SK141] gi|255297764|gb|EET77075.1| tRNA pseudouridine synthase B [Corynebacterium tuberculostearicum SK141] Length=297 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/289 (57%), Positives = 213/289 (74%), Gaps = 0/289 (0%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+V++DKPAGMTSHDVVGR RR F T++VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct 9 GLVIVDKPAGMTSHDVVGRLRRCFHTKKVGHAGTLDPMATGVLVLGMERGTKFLAHMVAS 68 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126 KSY ATIRLG T+T+DAEG+ A + AI+A + +L G+I Q P++VSAIK+ Sbjct 69 TKSYDATIRLGAATTTDDAEGEYSWGASAAAIDRAAIEAEIAKLTGDIMQKPAAVSAIKI 128 Query 127 GGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARDL 186 GRRA+ L R+G+ V + ARP+ +D+F++LA RR ID+DV +DCSSGTYIR+LARDL Sbjct 129 NGRRAHELVREGQEVDIPARPVTVDKFDVLAERREGDYIDLDVTVDCSSGTYIRSLARDL 188 Query 187 GDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAAEA 246 G+AL VGGH+TALRRT+VG F L A SLD LA+ P LSLSLDEA F +T EA Sbjct 189 GEALKVGGHLTALRRTKVGPFALADALSLDALADSPRLSLSLDEALARCFPVLSVTEEEA 248 Query 247 SAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 +A A G+ L G+ GV+AA +G+ +AL++++G R +V V RP+T+ Sbjct 249 AALAMGKWLEPRGLKGVHAAVAPNGQAVALIKEKGKRLATVFVARPSTL 297 >gi|38234052|ref|NP_939819.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae NCTC 13129] gi|42559711|sp|P60343.1|TRUB_CORDI RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|38200314|emb|CAE49999.1| tRNA pseudouridine synthase B [Corynebacterium diphtheriae] Length=300 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 153/292 (53%), Positives = 209/292 (72%), Gaps = 3/292 (1%) Query 7 GIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAA 66 G+V++DKP GMTSHDVV + RR F+T++VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct 9 GLVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAS 68 Query 67 PKSYAATIRLGQTTSTEDAEGQVLQSVPAKHL---TIEAIDAAMERLRGEIRQVPSSVSA 123 KSY ATIRLG T+T+D EG+ + S L T I A+++ RG I Q P++VSA Sbjct 69 TKSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSA 128 Query 124 IKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALA 183 IK+ G+RA++ R+G V++ ARP+ I R+++L RR IDIDVE+DCSSGTYIR+LA Sbjct 129 IKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSLA 188 Query 184 RDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTA 243 RDLG+ LGVGGH+TALRRT+VG F LD A +L+ L E P +SL+LD+A + ++ Sbjct 189 RDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEENPHVSLTLDQALAASYPVLSVSE 248 Query 244 AEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 EAS A G+ L G+ G++AA D GR IAL++++G R ++ V RP+T+ Sbjct 249 KEASDLAMGKWLTPRGLKGIHAAVDPHGRAIALVKEQGKRLATIFVARPSTL 300 >gi|302528530|ref|ZP_07280872.1| tRNA pseudouridine synthase B [Streptomyces sp. AA4] gi|302437425|gb|EFL09241.1| tRNA pseudouridine synthase B [Streptomyces sp. AA4] Length=305 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 166/295 (57%), Positives = 206/295 (70%), Gaps = 4/295 (1%) Query 3 ATGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGL 62 A PG++++DKPAGMTSHDVV R RRI TR+VGHAGTLDPMATGVLV+GIERATK+LG Sbjct 11 APPPGLLIVDKPAGMTSHDVVARARRIMGTRKVGHAGTLDPMATGVLVLGIERATKLLGH 70 Query 63 LTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKH----LTIEAIDAAMERLRGEIRQVP 118 L K+Y AT+ LG++T+T+DAEG+ L++ A +T E I + +L G+I+QVP Sbjct 71 LALDRKTYLATLSLGRSTTTDDAEGEPLENDAAPETLAAVTDEQIADGVAQLTGDIQQVP 130 Query 119 SSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTY 178 S+VSA+K+ G+RAY R G V L RP+ + RF++L RR D I++D ++CSSGTY Sbjct 131 SAVSAVKIDGKRAYARVRAGEDVVLPPRPVTVHRFDVLGLRREDDRIELDAVVECSSGTY 190 Query 179 IRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFAR 238 +RALARDLG LGVGGH+ ALRRT VG F L +AR+LD L E+P LSL LD A F R Sbjct 191 VRALARDLGAGLGVGGHLKALRRTTVGPFTLARARTLDQLEEKPELSLDLDAAVAAAFPR 250 Query 239 RDLTAAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPA 293 RDL AA A A GR +PA GI G Y DG V+AL D TRSV VL PA Sbjct 251 RDLDAATAKAVQYGRRIPAAGIAGTYGLFAPDGHVLALASDAEGVTRSVVVLLPA 305 Lambda K H 0.321 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 498909360640 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40