BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2801A

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|148823990|ref|YP_001288744.1|  transcriptional regulator [Myco...   151    4e-35
gi|253798114|ref|YP_003031115.1|  transcriptional regulator [Myco...   147    4e-34
gi|254551862|ref|ZP_05142309.1|  transcriptional regulator [Mycob...   144    6e-33
gi|120402157|ref|YP_951986.1|  CopG family transcriptional regula...   109    1e-22
gi|333992724|ref|YP_004525338.1|  transcriptional regulator [Myco...   103    9e-21
gi|84495583|ref|ZP_00994702.1|  hypothetical protein JNB_12294 [J...   100    8e-20
gi|134097901|ref|YP_001103562.1|  hypothetical protein SACE_1314 ...  81.6    3e-14
gi|325068597|ref|ZP_08127270.1|  transcriptional regulator [Actin...  72.8    1e-11
gi|343521806|ref|ZP_08758772.1|  toxin-antitoxin system, antitoxi...  69.3    2e-10
gi|269957100|ref|YP_003326889.1|  hypothetical protein Xcel_2313 ...  65.1    3e-09
gi|297623235|ref|YP_003704669.1|  hypothetical protein Trad_0998 ...  59.3    2e-07
gi|256396398|ref|YP_003117962.1|  CopG family transcriptional reg...  59.3    2e-07
gi|333920140|ref|YP_004493721.1|  hypothetical protein AS9A_2474 ...  58.5    4e-07
gi|291444611|ref|ZP_06584001.1|  predicted protein [Streptomyces ...  57.8    5e-07
gi|229492035|ref|ZP_04385849.1|  hypothetical transcriptional reg...  51.6    4e-05
gi|239987645|ref|ZP_04708309.1|  hypothetical protein SrosN1_1009...  51.6    4e-05
gi|119512621|ref|ZP_01631697.1|  hypothetical protein N9414_18133...  46.2    0.002
gi|186682627|ref|YP_001865823.1|  hypothetical protein Npun_R2293...  37.0    1.00 
gi|153808685|ref|ZP_01961353.1|  hypothetical protein BACCAC_0298...  35.4    2.8  
gi|325282448|ref|YP_004254989.1|  hypothetical protein Deipr_0199...  34.7    4.5  
gi|295084705|emb|CBK66228.1|  hypothetical protein [Bacteroides x...  34.3    7.0  
gi|218203971|ref|YP_002364824.1|  putative transcriptional regula...  33.9    7.8  
gi|160885112|ref|ZP_02066115.1|  hypothetical protein BACOVA_0311...  33.9    8.5  
gi|336402877|ref|ZP_08583601.1|  hypothetical protein HMPREF0127_...  33.9    8.8  
gi|300867551|ref|ZP_07112201.1|  conserved hypothetical protein [...  33.9    9.4  
gi|29347645|ref|NP_811148.1|  hypothetical protein BT_2235 [Bacte...  33.5    9.5  


>gi|148823990|ref|YP_001288744.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167967628|ref|ZP_02549905.1| hypothetical transcriptional regulator [Mycobacterium tuberculosis 
H37Ra]
 gi|289553411|ref|ZP_06442621.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 42 more sequence titles
 gi|289570981|ref|ZP_06451208.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289746605|ref|ZP_06505983.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289754908|ref|ZP_06514286.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289758926|ref|ZP_06518304.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289762976|ref|ZP_06522354.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|297732411|ref|ZP_06961529.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298526268|ref|ZP_07013677.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306785614|ref|ZP_07423936.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|306794292|ref|ZP_07432594.1| antitoxin [Mycobacterium tuberculosis SUMu005]
 gi|306807394|ref|ZP_07444062.1| antitoxin [Mycobacterium tuberculosis SUMu007]
 gi|308232246|ref|ZP_07664039.1| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308369862|ref|ZP_07666817.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308372395|ref|ZP_07667368.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|308374690|ref|ZP_07667844.1| antitoxin [Mycobacterium tuberculosis SUMu006]
 gi|308377130|ref|ZP_07668438.1| antitoxin [Mycobacterium tuberculosis SUMu008]
 gi|308378104|ref|ZP_07668670.1| antitoxin [Mycobacterium tuberculosis SUMu009]
 gi|308379321|ref|ZP_07668944.1| antitoxin [Mycobacterium tuberculosis SUMu010]
 gi|308380475|ref|ZP_07669202.1| antitoxin [Mycobacterium tuberculosis SUMu011]
 gi|308405972|ref|ZP_07669477.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|327507738|sp|P0CL61.1|MAZE9_MYCTU RecName: Full=Antitoxin MazE9
 gi|148722517|gb|ABR07142.1| hypothetical transcriptional regulator [Mycobacterium tuberculosis 
F11]
 gi|289438043|gb|EFD20536.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289544735|gb|EFD48383.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289687133|gb|EFD54621.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289695495|gb|EFD62924.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289710482|gb|EFD74498.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|289714490|gb|EFD78502.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|298496062|gb|EFI31356.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308214592|gb|EFO73991.1| antitoxin [Mycobacterium tuberculosis SUMu001]
 gi|308326238|gb|EFP15089.1| antitoxin [Mycobacterium tuberculosis SUMu002]
 gi|308329724|gb|EFP18575.1| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|308333401|gb|EFP22252.1| antitoxin [Mycobacterium tuberculosis SUMu004]
 gi|308337425|gb|EFP26276.1| antitoxin [Mycobacterium tuberculosis SUMu005]
 gi|308341090|gb|EFP29941.1| antitoxin [Mycobacterium tuberculosis SUMu006]
 gi|308346197|gb|EFP35048.1| antitoxin [Mycobacterium tuberculosis SUMu007]
 gi|308348895|gb|EFP37746.1| antitoxin [Mycobacterium tuberculosis SUMu008]
 gi|308353615|gb|EFP42466.1| antitoxin [Mycobacterium tuberculosis SUMu009]
 gi|308357461|gb|EFP46312.1| antitoxin [Mycobacterium tuberculosis SUMu010]
 gi|308361410|gb|EFP50261.1| antitoxin [Mycobacterium tuberculosis SUMu011]
 gi|308365023|gb|EFP53874.1| antitoxin [Mycobacterium tuberculosis SUMu012]
 gi|326904416|gb|EGE51349.1| antitoxin [Mycobacterium tuberculosis W-148]
 gi|328457887|gb|AEB03310.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
Length=76

 Score =  151 bits (381),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 75/76 (99%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT
Sbjct  1   MKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60

Query  61  DAWEQTVGDGVGDAPR  76
           DAWEQTVGDGVGDAPR
Sbjct  61  DAWEQTVGDGVGDAPR  76


>gi|253798114|ref|YP_003031115.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289444350|ref|ZP_06434094.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289448461|ref|ZP_06438205.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 6 more sequence titles
 gi|289575500|ref|ZP_06455727.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|253319617|gb|ACT24220.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289417269|gb|EFD14509.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289421419|gb|EFD18620.1| antitoxin [Mycobacterium tuberculosis CPHL_A]
 gi|289539931|gb|EFD44509.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|323718648|gb|EGB27812.1| antitoxin [Mycobacterium tuberculosis CDC1551A]
Length=74

 Score =  147 bits (372),  Expect = 4e-34, Method: Compositional matrix adjust.
 Identities = 73/74 (99%), Positives = 74/74 (100%), Gaps = 0/74 (0%)

Query  3   LSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDA  62
           +SVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDA
Sbjct  1   MSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDA  60

Query  63  WEQTVGDGVGDAPR  76
           WEQTVGDGVGDAPR
Sbjct  61  WEQTVGDGVGDAPR  74


>gi|254551862|ref|ZP_05142309.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
 gi|289751460|ref|ZP_06510838.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|294994104|ref|ZP_06799795.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297635413|ref|ZP_06953193.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|313659743|ref|ZP_07816623.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|289692047|gb|EFD59476.1| transcriptional regulator [Mycobacterium tuberculosis T92]
Length=72

 Score =  144 bits (362),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 71/72 (99%), Positives = 72/72 (100%), Gaps = 0/72 (0%)

Query  5   VSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWE  64
           +SLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWE
Sbjct  1   MSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWE  60

Query  65  QTVGDGVGDAPR  76
           QTVGDGVGDAPR
Sbjct  61  QTVGDGVGDAPR  72


>gi|120402157|ref|YP_951986.1| CopG family transcriptional regulator [Mycobacterium vanbaalenii 
PYR-1]
 gi|119954975|gb|ABM11980.1| putative transcriptional regulator, CopG family [Mycobacterium 
vanbaalenii PYR-1]
Length=76

 Score =  109 bits (273),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 50/76 (66%), Positives = 62/76 (82%), Gaps = 0/76 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +K+S+SLS+D++A++DAYV  AGLPSRSA +Q AIR+LRYPTLEDDY  AW EWS+ G+ 
Sbjct  1   MKISISLSEDEIALVDAYVDHAGLPSRSAAIQKAIRMLRYPTLEDDYVQAWGEWSSGGEG  60

Query  61  DAWEQTVGDGVGDAPR  76
           D WE   GDGVGDA R
Sbjct  61  DVWESAAGDGVGDAAR  76


>gi|333992724|ref|YP_004525338.1| transcriptional regulator [Mycobacterium sp. JDM601]
 gi|333488692|gb|AEF38084.1| transcriptional regulator [Mycobacterium sp. JDM601]
Length=76

 Score =  103 bits (257),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 49/76 (65%), Positives = 60/76 (79%), Gaps = 0/76 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +KLS+SLS +DV  LDAY +R GLPSRSA +QHAIR+LRYPTLEDDYA+AW +WSA G+ 
Sbjct  1   MKLSISLSAEDVEALDAYAQRTGLPSRSAAVQHAIRMLRYPTLEDDYADAWAQWSADGED  60

Query  61  DAWEQTVGDGVGDAPR  76
             W++   DG  DAPR
Sbjct  61  QVWDRATDDGAVDAPR  76


>gi|84495583|ref|ZP_00994702.1| hypothetical protein JNB_12294 [Janibacter sp. HTCC2649]
 gi|84385076|gb|EAQ00956.1| hypothetical protein JNB_12294 [Janibacter sp. HTCC2649]
Length=76

 Score =  100 bits (249),  Expect = 8e-20, Method: Compositional matrix adjust.
 Identities = 50/76 (66%), Positives = 58/76 (77%), Gaps = 0/76 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +KLS+SLSDDDVA LD YVK AG+PSRSA +Q AIR+LR P LED YA AW EW A+G+ 
Sbjct  1   MKLSISLSDDDVAALDQYVKAAGVPSRSAAIQRAIRMLRGPELEDAYAAAWDEWQASGEA  60

Query  61  DAWEQTVGDGVGDAPR  76
            AWE T  DG+ DA R
Sbjct  61  TAWEVTTADGLTDAAR  76


>gi|134097901|ref|YP_001103562.1| hypothetical protein SACE_1314 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291007381|ref|ZP_06565354.1| hypothetical protein SeryN2_22892 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133910524|emb|CAM00637.1| hypothetical protein SACE_1314 [Saccharopolyspora erythraea NRRL 
2338]
Length=76

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 39/76 (52%), Positives = 50/76 (66%), Gaps = 0/76 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +KLSVSL+D+DV  +D Y ++ G PSRSA +  AI +LR   LED YA+AW EW +  D 
Sbjct  1   MKLSVSLTDEDVTFVDEYAQQVGAPSRSAVIHQAISLLRSAELEDAYASAWAEWESGDDR  60

Query  61  DAWEQTVGDGVGDAPR  76
             WE T  DG+ DA R
Sbjct  61  KLWETTASDGIADASR  76


>gi|325068597|ref|ZP_08127270.1| transcriptional regulator [Actinomyces oris K20]
Length=79

 Score = 72.8 bits (177),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 36/71 (51%), Positives = 48/71 (68%), Gaps = 0/71 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +KLSVSLS+ D+ +LD  V+R GL SRSAG+Q+AIR+L    L+D YA AW  W  + D 
Sbjct  1   MKLSVSLSESDLILLDRCVERDGLASRSAGIQNAIRLLGKADLQDAYAEAWSSWDTSEDA  60

Query  61  DAWEQTVGDGV  71
             W+  V DG+
Sbjct  61  TVWDSAVADGI  71


>gi|343521806|ref|ZP_08758772.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix 
domain protein [Actinomyces sp. oral taxon 175 str. F0384]
 gi|343401215|gb|EGV13721.1| toxin-antitoxin system, antitoxin component, ribbon-helix-helix 
domain protein [Actinomyces sp. oral taxon 175 str. F0384]
Length=75

 Score = 69.3 bits (168),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 34/67 (51%), Positives = 46/67 (69%), Gaps = 0/67 (0%)

Query  5   VSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWE  64
           +SLS+ D+ +LD  V+R GL SRSAG+Q+AIR+L    L+D YA AW  W A+ D   W+
Sbjct  1   MSLSESDLILLDRCVERDGLASRSAGIQNAIRLLGKADLQDAYAEAWSSWDASEDATVWD  60

Query  65  QTVGDGV  71
            TV DG+
Sbjct  61  STVADGI  67


>gi|269957100|ref|YP_003326889.1| hypothetical protein Xcel_2313 [Xylanimonas cellulosilytica DSM 
15894]
 gi|269305781|gb|ACZ31331.1| hypothetical protein Xcel_2313 [Xylanimonas cellulosilytica DSM 
15894]
Length=85

 Score = 65.1 bits (157),  Expect = 3e-09, Method: Compositional matrix adjust.
 Identities = 33/71 (47%), Positives = 43/71 (61%), Gaps = 0/71 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           VKLS SL   DVA L+ Y +R  LPSRSA L  A++ LR   LE  Y  A++EW  +G+ 
Sbjct  11  VKLSASLPAADVAYLEHYARRHRLPSRSATLHAAVQALRERELEAQYVEAYREWEESGEA  70

Query  61  DAWEQTVGDGV  71
             W+  V DG+
Sbjct  71  AVWDVAVADGI  81


>gi|297623235|ref|YP_003704669.1| hypothetical protein Trad_0998 [Truepera radiovictrix DSM 17093]
 gi|297164415|gb|ADI14126.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
Length=82

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/73 (44%), Positives = 45/73 (62%), Gaps = 2/73 (2%)

Query  1   VKLSVSLSDDDVAI--LDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAG  58
           +K+S+S   D+V +  LD+Y +   L SRS  L+ AI+ LR   L   YA A  EW A+G
Sbjct  1   MKVSISARVDEVLLRYLDSYQRAHALKSRSEVLEQAIKALRERELSGQYAQAMAEWDASG  60

Query  59  DTDAWEQTVGDGV  71
           D + W+QT GDG+
Sbjct  61  DAELWDQTAGDGL  73


>gi|256396398|ref|YP_003117962.1| CopG family transcriptional regulator [Catenulispora acidiphila 
DSM 44928]
 gi|256362624|gb|ACU76121.1| CopG family transcriptional regulator [Catenulispora acidiphila 
DSM 44928]
Length=75

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 32/72 (45%), Positives = 45/72 (63%), Gaps = 4/72 (5%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTD  61
           KLS+SL D DVA LD   +     SRSA +Q AI++ R   + DDY  A+ EW ++G+ +
Sbjct  4   KLSISLPDADVAFLDELDRN----SRSAAVQAAIKLARSVRIVDDYTAAYDEWVSSGEAE  59

Query  62  AWEQTVGDGVGD  73
            W+  VGDG+ D
Sbjct  60  VWDGVVGDGIAD  71


>gi|333920140|ref|YP_004493721.1| hypothetical protein AS9A_2474 [Amycolicicoccus subflavus DQS3-9A1]
 gi|333482361|gb|AEF40921.1| hypothetical protein AS9A_2474 [Amycolicicoccus subflavus DQS3-9A1]
Length=69

 Score = 58.5 bits (140),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 31/68 (46%), Positives = 41/68 (61%), Gaps = 0/68 (0%)

Query  5   VSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWE  64
           ++L  +DV  LD YV+R GL SR+ GL+ AI+ LR   LED Y  A + WS A D   WE
Sbjct  1   MTLPREDVRTLDDYVRRTGLESRNDGLRAAIQALRDNRLEDAYRVALESWSDASDAAVWE  60

Query  65  QTVGDGVG  72
             + DG+ 
Sbjct  61  LAIADGLS  68


>gi|291444611|ref|ZP_06584001.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291347558|gb|EFE74462.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length=76

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 33/76 (44%), Positives = 45/76 (60%), Gaps = 0/76 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
           +K+SVSL  +DV  +DAY       SRSA +Q AI +LR   LE +Y  A+ EW  + D 
Sbjct  1   MKISVSLPQEDVDFVDAYAAANAAESRSAVIQAAIELLRTSRLESEYEAAFAEWDKSEDA  60

Query  61  DAWEQTVGDGVGDAPR  76
             W++  GDG+ DA R
Sbjct  61  AFWDRATGDGLTDAAR  76


>gi|229492035|ref|ZP_04385849.1| hypothetical transcriptional regulator [Rhodococcus erythropolis 
SK121]
 gi|229321059|gb|EEN86866.1| hypothetical transcriptional regulator [Rhodococcus erythropolis 
SK121]
Length=70

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 41/70 (59%), Gaps = 5/70 (7%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDT  60
            K ++SL D+D  +LD YV+  GL  RSAG++ A+R+L    LE DYA A+ E    GD 
Sbjct  3   TKFTISLPDEDAHLLDEYVRDHGLRGRSAGIRAALRLLSTSGLERDYAAAFAE----GDV  58

Query  61  D-AWEQTVGD  69
           D  W+    D
Sbjct  59  DEVWDAVTAD  68


>gi|239987645|ref|ZP_04708309.1| hypothetical protein SrosN1_10099 [Streptomyces roseosporus NRRL 
11379]
Length=72

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/72 (42%), Positives = 41/72 (57%), Gaps = 0/72 (0%)

Query  5   VSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWE  64
           +SL  +DV  +DAY       SRSA +Q AI +LR   LE +Y  A+ EW  + D   W+
Sbjct  1   MSLPQEDVDFVDAYAAANAAESRSAVIQAAIELLRTSRLESEYEAAFAEWDKSEDAAFWD  60

Query  65  QTVGDGVGDAPR  76
           +  GDG+ DA R
Sbjct  61  RATGDGLTDAAR  72


>gi|119512621|ref|ZP_01631697.1| hypothetical protein N9414_18133 [Nodularia spumigena CCY9414]
 gi|119462754|gb|EAW43715.1| hypothetical protein N9414_18133 [Nodularia spumigena CCY9414]
Length=74

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 37/72 (52%), Gaps = 5/72 (6%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTD  61
           KLS+SL    V  ++ Y    G  SRS  ++ AI +LRY  LE  Y  A     AA    
Sbjct  5   KLSISLPASLVQFVENYKVTKGCKSRSQVIELAIELLRYQELEQPYREA-----AAEFNP  59

Query  62  AWEQTVGDGVGD  73
            W+ TVGDG+ D
Sbjct  60  EWDVTVGDGLTD  71


>gi|186682627|ref|YP_001865823.1| hypothetical protein Npun_R2293 [Nostoc punctiforme PCC 73102]
 gi|186465079|gb|ACC80880.1| hypothetical protein Npun_R2293 [Nostoc punctiforme PCC 73102]
Length=74

 Score = 37.0 bits (84),  Expect = 1.00, Method: Compositional matrix adjust.
 Identities = 25/72 (35%), Positives = 40/72 (56%), Gaps = 5/72 (6%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTD  61
           KLS+SL    V  ++ Y       SRS  ++ A+++LR   LE+    A++E SA  + D
Sbjct  5   KLSISLPASLVQFIEGYKVAHDCKSRSQVIEKALQLLRTQELEE----AYREASAEVEND  60

Query  62  AWEQTVGDGVGD  73
            W+ T+ DG+ D
Sbjct  61  -WDITITDGLTD  71


>gi|153808685|ref|ZP_01961353.1| hypothetical protein BACCAC_02984 [Bacteroides caccae ATCC 43185]
 gi|149128511|gb|EDM19729.1| hypothetical protein BACCAC_02984 [Bacteroides caccae ATCC 43185]
Length=77

 Score = 35.4 bits (80),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 15/52 (29%), Positives = 32/52 (62%), Gaps = 0/52 (0%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQE  53
           ++S+ LSDD+  I+D Y+++  + ++S  L+  I +  +  +E+DY   + E
Sbjct  21  RMSILLSDDEQQIVDRYLEKYKITNKSRWLRETILMFIHKNMEEDYPTLFGE  72


>gi|325282448|ref|YP_004254989.1| hypothetical protein Deipr_0199 [Deinococcus proteolyticus MRP]
 gi|324314257|gb|ADY25372.1| hypothetical protein Deipr_0199 [Deinococcus proteolyticus MRP]
Length=76

 Score = 34.7 bits (78),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 19/47 (41%), Positives = 26/47 (56%), Gaps = 0/47 (0%)

Query  1   VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDY  47
            ++S +L  +    LD Y KR GL +RSA L  A+R L+   LE  Y
Sbjct  5   TRISATLPTELSRFLDDYQKRHGLDTRSAALAEAVRALQTSELEAAY  51


>gi|295084705|emb|CBK66228.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length=67

 Score = 34.3 bits (77),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 14/52 (27%), Positives = 32/52 (62%), Gaps = 0/52 (0%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQE  53
           ++S+ LSD++  I+D Y+++  + ++S  L+  I +  +  +E+DY   + E
Sbjct  11  RMSILLSDEEQLIVDRYLEKYKITNKSRWLRETILMFIHKNMEEDYPTLFGE  62


>gi|218203971|ref|YP_002364824.1| putative transcriptional regulators, CopG/Arc/MetJ family [Cyanothece 
sp. PCC 8801]
 gi|218169722|gb|ACK68457.1| putative transcriptional regulators, CopG/Arc/MetJ family [Cyanothece 
sp. PCC 8801]
Length=74

 Score = 33.9 bits (76),  Expect = 7.8, Method: Compositional matrix adjust.
 Identities = 24/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTD  61
           KLS+SLS      ++ Y    G  SRS  +  A+ +L+    E +   A+ + S   D D
Sbjct  5   KLSISLSPTLTRFIEHYKTAKGYKSRSEVISIALTLLQ----EKELFEAYHQASTEVDED  60

Query  62  AWEQTVGDGVGD  73
            W+ TV DG+ D
Sbjct  61  -WDVTVADGLSD  71


>gi|160885112|ref|ZP_02066115.1| hypothetical protein BACOVA_03110 [Bacteroides ovatus ATCC 8483]
 gi|237714908|ref|ZP_04545389.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237718263|ref|ZP_04548744.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 15 more sequence titles
 gi|260642804|ref|ZP_05417379.2| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|262406823|ref|ZP_06083372.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298483659|ref|ZP_07001834.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|299147813|ref|ZP_07040876.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|315922490|ref|ZP_07918730.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|336416564|ref|ZP_08596897.1| hypothetical protein HMPREF1017_04005 [Bacteroides ovatus 3_8_47FAA]
 gi|156109462|gb|EDO11207.1| hypothetical protein BACOVA_03110 [Bacteroides ovatus ATCC 8483]
 gi|229445233|gb|EEO51024.1| hypothetical protein BSAG_02735 [Bacteroides sp. D1]
 gi|229452447|gb|EEO58238.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260620521|gb|EEX43392.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|262355526|gb|EEZ04617.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298270229|gb|EFI11815.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298513996|gb|EFI37882.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|313696365|gb|EFS33200.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|335937621|gb|EGM99519.1| hypothetical protein HMPREF1017_04005 [Bacteroides ovatus 3_8_47FAA]
Length=77

 Score = 33.9 bits (76),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 14/52 (27%), Positives = 32/52 (62%), Gaps = 0/52 (0%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQE  53
           ++S+ LSD++  I+D Y+++  + ++S  L+  I +  +  +E+DY   + E
Sbjct  21  RMSILLSDEEQLIVDRYLEKYKITNKSRWLRETILMFIHKNMEEDYPTLFGE  72


>gi|336402877|ref|ZP_08583601.1| hypothetical protein HMPREF0127_00914 [Bacteroides sp. 1_1_30]
 gi|335947558|gb|EGN09347.1| hypothetical protein HMPREF0127_00914 [Bacteroides sp. 1_1_30]
Length=77

 Score = 33.9 bits (76),  Expect = 8.8, Method: Compositional matrix adjust.
 Identities = 14/52 (27%), Positives = 32/52 (62%), Gaps = 0/52 (0%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQE  53
           ++S+ LSD++  I+D Y+++  + ++S  L+  I +  +  +E+DY   + E
Sbjct  21  RMSILLSDEEQLIVDRYLEKYKITNKSRWLRETILMFIHKNMEEDYPTLFGE  72


>gi|300867551|ref|ZP_07112201.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334439|emb|CBN57371.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length=75

 Score = 33.9 bits (76),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 35/72 (49%), Gaps = 5/72 (6%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTD  61
           K+S+SL    V  ++ Y    G  S S  ++ A+ +L+   LE  Y  A  E  +     
Sbjct  6   KISISLPTSLVKFIETYKITKGCQSPSQVIEVALELLQNQELESAYRQASSEIDS-----  60

Query  62  AWEQTVGDGVGD  73
           AW+ T+ DG+ D
Sbjct  61  AWDITIADGLTD  72


>gi|29347645|ref|NP_811148.1| hypothetical protein BT_2235 [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572104|ref|ZP_04849508.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298383485|ref|ZP_06993046.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|29339546|gb|AAO77342.1| hypothetical protein BT_2235 [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838284|gb|EES66371.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298263089|gb|EFI05952.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length=77

 Score = 33.5 bits (75),  Expect = 9.5, Method: Compositional matrix adjust.
 Identities = 14/52 (27%), Positives = 32/52 (62%), Gaps = 0/52 (0%)

Query  2   KLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQE  53
           ++S+ LS+D+  I+D Y+++  + ++S  L+  I +  +  +E+DY   + E
Sbjct  21  RMSILLSEDEQLIVDRYLEKYKITNKSRWLRETILMFIHKNMEEDYPTLFGE  72



Lambda     K      H
   0.314    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130617491818


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40