BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2804c

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609941|ref|NP_217320.1|  hypothetical protein Rv2804c [Mycob...   409    1e-112
gi|298526271|ref|ZP_07013680.1|  conserved hypothetical protein [...   407    4e-112
gi|31793980|ref|NP_856473.1|  hypothetical protein Mb2827c [Mycob...   406    1e-111
gi|167967625|ref|ZP_02549902.1|  hypothetical protein MtubH3_0615...   168    4e-40 
gi|323718651|gb|EGB27815.1|  hypothetical protein TMMG_02811 [Myc...   166    2e-39 
gi|254551865|ref|ZP_05142312.1|  hypothetical protein Mtube_15637...   128    5e-28 
gi|269792689|ref|YP_003317593.1|  DNA polymerase I [Thermanaerovi...  35.4    5.1   
gi|345319584|ref|XP_003430170.1|  PREDICTED: tensin-4-like [Ornit...  35.0    6.3   


>gi|15609941|ref|NP_217320.1| hypothetical protein Rv2804c [Mycobacterium tuberculosis H37Rv]
 gi|15842342|ref|NP_337379.1| hypothetical protein MT2872 [Mycobacterium tuberculosis CDC1551]
 gi|148662646|ref|YP_001284169.1| hypothetical protein MRA_2828 [Mycobacterium tuberculosis H37Ra]
 8 more sequence titles
 
gi|254232900|ref|ZP_04926227.1| hypothetical protein TBCG_02740 [Mycobacterium tuberculosis C]
 gi|289762980|ref|ZP_06522358.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|1648917|emb|CAB03643.1| HYPOTHETICAL PROTEIN Rv2804c [Mycobacterium tuberculosis H37Rv]
 gi|13882639|gb|AAK47193.1| hypothetical protein MT2872 [Mycobacterium tuberculosis CDC1551]
 gi|124601959|gb|EAY60969.1| hypothetical protein TBCG_02740 [Mycobacterium tuberculosis C]
 gi|148506798|gb|ABQ74607.1| hypothetical protein MRA_2828 [Mycobacterium tuberculosis H37Ra]
 gi|289710486|gb|EFD74502.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|344220632|gb|AEN01263.1| hypothetical protein MTCTRI2_2857 [Mycobacterium tuberculosis 
CTRI-2]
Length=209

 Score =  409 bits (1051),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 209/209 (100%), Positives = 209/209 (100%), Gaps = 0/209 (0%)

Query  1    MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP  60
            MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP
Sbjct  1    MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP  60

Query  61   RGGHHRIQNLAVAPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE  120
            RGGHHRIQNLAVAPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE
Sbjct  61   RGGHHRIQNLAVAPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE  120

Query  121  GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED  180
            GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED
Sbjct  121  GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED  180

Query  181  EHWDRVGSGWPRPGRDGTRIRSMLPMASA  209
            EHWDRVGSGWPRPGRDGTRIRSMLPMASA
Sbjct  181  EHWDRVGSGWPRPGRDGTRIRSMLPMASA  209


>gi|298526271|ref|ZP_07013680.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339632815|ref|YP_004724457.1| hypothetical protein MAF_28090 [Mycobacterium africanum GM041182]
 gi|298496065|gb|EFI31359.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|339332171|emb|CCC27879.1| hypothetical protein MAF_28090 [Mycobacterium africanum GM041182]
Length=209

 Score =  407 bits (1047),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 208/209 (99%), Positives = 208/209 (99%), Gaps = 0/209 (0%)

Query  1    MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP  60
            MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP
Sbjct  1    MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP  60

Query  61   RGGHHRIQNLAVAPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE  120
            RGGHHRIQNLAV PPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE
Sbjct  61   RGGHHRIQNLAVVPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE  120

Query  121  GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED  180
            GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED
Sbjct  121  GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED  180

Query  181  EHWDRVGSGWPRPGRDGTRIRSMLPMASA  209
            EHWDRVGSGWPRPGRDGTRIRSMLPMASA
Sbjct  181  EHWDRVGSGWPRPGRDGTRIRSMLPMASA  209


>gi|31793980|ref|NP_856473.1| hypothetical protein Mb2827c [Mycobacterium bovis AF2122/97]
 gi|121638684|ref|YP_978908.1| hypothetical protein BCG_2822c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224991176|ref|YP_002645865.1| hypothetical protein JTY_2816 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|31619574|emb|CAD95012.1| HYPOTHETICAL PROTEIN Mb2827c [Mycobacterium bovis AF2122/97]
 gi|121494332|emb|CAL72810.1| Hypothetical protein BCG_2822c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224774291|dbj|BAH27097.1| hypothetical protein JTY_2816 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341602722|emb|CCC65398.1| hypothetical protein BCGM_2805c [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=209

 Score =  406 bits (1043),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 207/209 (99%), Positives = 207/209 (99%), Gaps = 0/209 (0%)

Query  1    MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRAAHP  60
            MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRA HP
Sbjct  1    MHDHQVLAARHAHQGPHVLQQRPGFVAEAPRPKATPVDLLGRARQPRAGQHLPRRRATHP  60

Query  61   RGGHHRIQNLAVAPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE  120
            RGGHHRIQNLAV PPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE
Sbjct  61   RGGHHRIQNLAVVPPHHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDVADPPVEASTLE  120

Query  121  GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED  180
            GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED
Sbjct  121  GQEAVVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASED  180

Query  181  EHWDRVGSGWPRPGRDGTRIRSMLPMASA  209
            EHWDRVGSGWPRPGRDGTRIRSMLPMASA
Sbjct  181  EHWDRVGSGWPRPGRDGTRIRSMLPMASA  209


>gi|167967625|ref|ZP_02549902.1| hypothetical protein MtubH3_06151 [Mycobacterium tuberculosis 
H37Ra]
 gi|289754911|ref|ZP_06514289.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289695498|gb|EFD62927.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=85

 Score =  168 bits (426),  Expect = 4e-40, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  125  VVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWD  184
            +VTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWD
Sbjct  1    MVTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWD  60

Query  185  RVGSGWPRPGRDGTRIRSMLPMASA  209
            RVGSGWPRPGRDGTRIRSMLPMASA
Sbjct  61   RVGSGWPRPGRDGTRIRSMLPMASA  85


>gi|323718651|gb|EGB27815.1| hypothetical protein TMMG_02811 [Mycobacterium tuberculosis CDC1551A]
Length=84

 Score =  166 bits (421),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 83/84 (99%), Positives = 84/84 (100%), Gaps = 0/84 (0%)

Query  126  VTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWDR  185
            +TVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWDR
Sbjct  1    MTVELGGAVVDGVDDQGAGAVVPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWDR  60

Query  186  VGSGWPRPGRDGTRIRSMLPMASA  209
            VGSGWPRPGRDGTRIRSMLPMASA
Sbjct  61   VGSGWPRPGRDGTRIRSMLPMASA  84


>gi|254551865|ref|ZP_05142312.1| hypothetical protein Mtube_15637 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=63

 Score =  128 bits (321),  Expect = 5e-28, Method: Compositional matrix adjust.
 Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)

Query  147  VPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWDRVGSGWPRPGRDGTRIRSMLPM  206
            +PGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWDRVGSGWPRPGRDGTRIRSMLPM
Sbjct  1    MPGTGHGSDEGIEEKIATETGALLLPVERQASEDEHWDRVGSGWPRPGRDGTRIRSMLPM  60

Query  207  ASA  209
            ASA
Sbjct  61   ASA  63


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
Length=836

 Score = 35.4 bits (80),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 24/68 (36%), Positives = 37/68 (55%), Gaps = 4/68 (5%)

Query  140  DQGAGAVVPGTGHGSDEGIEEKIATETGALL---LPVERQASEDEHWDRVGSGWPRPGRD  196
            D+GAG  V  TG   +  +E+ +A+ T AL+     ++R +SE   WD+ G  W R   D
Sbjct  287  DRGAGVEVSSTGGAVESSLEDLLASGTLALVGRWEELQRGSSELALWDKAGGLW-RGAVD  345

Query  197  GTRIRSML  204
              R+R +L
Sbjct  346  LDRLRRIL  353


>gi|345319584|ref|XP_003430170.1| PREDICTED: tensin-4-like [Ornithorhynchus anatinus]
Length=492

 Score = 35.0 bits (79),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 39/114 (35%), Positives = 52/114 (46%), Gaps = 15/114 (13%)

Query  53   PRRRAAHPRGGHHRIQNLAVAPP---HHRRQQQRGHSRRSIGSTSPSDDSASYSQRPRDV  109
            PRRR    RG      +L  A P   H  R QQR  SR S+ S+SP  D++    RP   
Sbjct  106  PRRRDVSSRGS----GSLLPASPGFEHVLRAQQRA-SRASVLSSSPGSDTSYSLGRPTPA  160

Query  110  ADPPVEASTLEGQEAVV---TVELGGAVVDGVDDQ----GAGAVVPGTGHGSDE  156
            A PP  A+++     V+    +E G A    +  Q    G  A +PG  HGS +
Sbjct  161  AAPPSIANSMMDIPVVLVNGCLEPGAASPQPIQRQLSPSGTPAHLPGMSHGSSK  214



Lambda     K      H
   0.315    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 242769087144


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40