BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2805
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
gi|148823994|ref|YP_001288748.1| hypothetical protein TBFG_12819... 269 8e-71
gi|15609942|ref|NP_217321.1| hypothetical protein Rv2805 [Mycoba... 268 2e-70
gi|289444354|ref|ZP_06434098.1| conserved hypothetical protein [... 267 4e-70
gi|31793981|ref|NP_856474.1| hypothetical protein Mb2828 [Mycoba... 265 1e-69
gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491... 170 5e-41
gi|296169395|ref|ZP_06851018.1| conserved hypothetical protein [... 165 2e-39
gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycoba... 161 3e-38
gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Myc... 161 3e-38
gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 ... 160 7e-38
gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycoba... 160 8e-38
gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166... 159 1e-37
gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 ... 159 1e-37
gi|167967622|ref|ZP_02549899.1| hypothetical protein MtubH3_0613... 151 3e-35
gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevi... 146 1e-33
gi|340627805|ref|YP_004746257.1| hypothetical protein MCAN_28321... 133 1e-29
gi|338753668|gb|AEI96657.1| integrase core domain-containing pro... 73.6 9e-12
gi|296454382|ref|YP_003661525.1| integrase core domain-containin... 73.6 1e-11
gi|296454294|ref|YP_003661437.1| integrase core domain-containin... 73.6 1e-11
gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacter... 63.5 9e-09
gi|325963578|ref|YP_004241484.1| integrase family protein [Arthr... 60.1 1e-07
gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Na... 59.7 1e-07
gi|315656886|ref|ZP_07909773.1| transposase [Mobiluncus curtisii... 59.3 2e-07
gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Na... 59.3 2e-07
gi|338755106|gb|AEI98095.1| integrase core domain-containing pro... 58.9 3e-07
gi|298346653|ref|YP_003719340.1| putative transposase [Mobiluncu... 58.2 4e-07
gi|260906251|ref|ZP_05914573.1| Integrase catalytic region [Brev... 55.8 2e-06
gi|167967623|ref|ZP_02549900.1| hypothetical protein MtubH3_0614... 55.5 2e-06
gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycob... 53.9 7e-06
gi|326773219|ref|ZP_08232502.1| conserved hypothetical protein [... 50.4 8e-05
gi|326773200|ref|ZP_08232483.1| transposase [Actinomyces viscosu... 50.4 9e-05
gi|77454858|ref|YP_345726.1| putative transposase [Rhodococcus e... 49.3 2e-04
gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desul... 48.5 3e-04
gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brev... 47.8 6e-04
gi|260906447|ref|ZP_05914769.1| Integrase catalytic region [Brev... 47.0 9e-04
gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brev... 47.0 0.001
gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [My... 47.0 0.001
gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [My... 46.6 0.001
gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brev... 45.4 0.003
gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycob... 45.1 0.003
gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Myc... 42.7 0.018
gi|226362065|ref|YP_002779843.1| transposase [Rhodococcus opacus... 40.0 0.12
gi|189913477|ref|YP_001964705.1| Putative transposase [Leptospir... 39.3 0.19
gi|189913308|ref|YP_001964537.1| hypothetical protein LEPBI_II01... 39.3 0.19
gi|189913142|ref|YP_001965030.1| Transposase,ISLbi1 [Leptospira ... 39.3 0.19
gi|189909826|ref|YP_001961381.1| ISLbi1 transposase [Leptospira ... 39.3 0.19
gi|13488249|ref|NP_085773.1| hypothetical protein mlr9230 [Mesor... 38.5 0.30
gi|218516977|ref|ZP_03513817.1| integrase catalytic region [Rhiz... 38.1 0.40
gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kos... 38.1 0.44
gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kos... 38.1 0.46
gi|150377164|ref|YP_001313760.1| integrase catalytic region [Sin... 37.7 0.55
>gi|148823994|ref|YP_001288748.1| hypothetical protein TBFG_12819 [Mycobacterium tuberculosis F11]
gi|253798110|ref|YP_003031111.1| hypothetical protein TBMG_01168 [Mycobacterium tuberculosis KZN
1435]
gi|254232899|ref|ZP_04926226.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
34 more sequence titles
Length=143
Score = 269 bits (688), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV
Sbjct 10 MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 69
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 120
WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT
Sbjct 70 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 129
Query 121 LPDGFPARAVRTRT 134
LPDGFPARAVRTRT
Sbjct 130 LPDGFPARAVRTRT 143
>gi|15609942|ref|NP_217321.1| hypothetical protein Rv2805 [Mycobacterium tuberculosis H37Rv]
gi|148662647|ref|YP_001284170.1| hypothetical protein MRA_2829 [Mycobacterium tuberculosis H37Ra]
gi|289553407|ref|ZP_06442617.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
7 more sequence titles
Length=134
Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%), Gaps = 0/134 (0%)
Query 1 MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV
Sbjct 1 MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 120
WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT
Sbjct 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 120
Query 121 LPDGFPARAVRTRT 134
LPDGFPARAVRTRT
Sbjct 121 LPDGFPARAVRTRT 134
>gi|289444354|ref|ZP_06434098.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289448465|ref|ZP_06438209.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289575504|ref|ZP_06455731.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
10 more sequence titles
Length=143
Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
MGR NGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV
Sbjct 10 MGRDNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 69
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 120
WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT
Sbjct 70 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 129
Query 121 LPDGFPARAVRTRT 134
LPDGFPARAVRTRT
Sbjct 130 LPDGFPARAVRTRT 143
>gi|31793981|ref|NP_856474.1| hypothetical protein Mb2828 [Mycobacterium bovis AF2122/97]
gi|121638685|ref|YP_978909.1| hypothetical protein BCG_2823 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991177|ref|YP_002645866.1| hypothetical protein JTY_2817 [Mycobacterium bovis BCG str. Tokyo
172]
13 more sequence titles
Length=134
Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/134 (99%), Positives = 133/134 (99%), Gaps = 0/134 (0%)
Query 1 MGRGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
MGR NGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV
Sbjct 1 MGRDNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 120
WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT
Sbjct 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAGT 120
Query 121 LPDGFPARAVRTRT 134
LPDGFPARAVRTRT
Sbjct 121 LPDGFPARAVRTRT 134
>gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491 [Mycobacterium canettii CIPT
140010059]
gi|340006010|emb|CCC45180.1| putative uncharacterized protein bcg_2825 [Mycobacterium canettii
CIPT 140010059]
Length=384
Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/101 (84%), Positives = 89/101 (89%), Gaps = 0/101 (0%)
Query 12 VVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY 71
+VATTGMGRSTAR+MLTGPRLP PAEQVDGR LR RGFSD+ARALLEHVWALMGMPCGKY
Sbjct 1 MVATTGMGRSTARRMLTGPRLPDPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 72 LVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
LVVM DLWLPLL AAGDLDKP TEASVAELKA + +R
Sbjct 61 LVVMLDLWLPLLAAAGDLDKPFATEASVAELKAMSAATVDR 101
>gi|296169395|ref|ZP_06851018.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895945|gb|EFG75637.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=160
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 91/108 (85%), Gaps = 0/108 (0%)
Query 5 NGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALM 64
KILD VV+TTGMGRSTAR+MLTGPRLP PAEQVD R+LRPRGFSD+ARALLE+VWALM
Sbjct 29 KSKILDRVVSTTGMGRSTARRMLTGPRLPDPAEQVDRRTLRPRGFSDDARALLEYVWALM 88
Query 65 GMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
GMPCGKYLVVM LWLPLL +GDLD+P TEA+ AELKA + +R
Sbjct 89 GMPCGKYLVVMVGLWLPLLAESGDLDRPFATEAASAELKAMSAATLDR 136
>gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycobacterium tuberculosis CDC1551]
gi|31793983|ref|NP_856476.1| hypothetical protein Mb2830 [Mycobacterium bovis AF2122/97]
gi|148823996|ref|YP_001288750.1| hypothetical protein TBFG_12821 [Mycobacterium tuberculosis F11]
51 more sequence titles
Length=384
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/101 (79%), Positives = 88/101 (88%), Gaps = 0/101 (0%)
Query 12 VVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY 71
+V+TTGMGRSTAR+MLTGP LP PAEQVDGR LR RGFSD+ARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 72 LVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
LVVM +LWLPL+ AAGDLDKP TEA+VAELKA + +R
Sbjct 61 LVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDR 101
>gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991179|ref|YP_002645868.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494335|emb|CAL72813.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774294|dbj|BAH27100.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602725|emb|CCC65401.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=384
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/101 (79%), Positives = 88/101 (88%), Gaps = 0/101 (0%)
Query 12 VVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY 71
+V+TTGMGRSTAR+MLTGP LP PAEQVDGR LR RGFSD+ARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 72 LVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
LVVM +LWLPL+ AAGDLDKP TEA+VAELKA + +R
Sbjct 61 LVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDR 101
>gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
gi|308341096|gb|EFP29947.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
Length=384
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/101 (78%), Positives = 88/101 (88%), Gaps = 0/101 (0%)
Query 12 VVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY 71
+V+TTGMGRSTAR+MLTGP LP PAEQVDGR LR RGFSD+ARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 72 LVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
LVVM +LWLPL+ A+GDLDKP TEA+VAELKA + +R
Sbjct 61 LVVMLELWLPLVAASGDLDKPFATEAAVAELKAMSAATVDR 101
>gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycobacterium tuberculosis H37Rv]
gi|148662649|ref|YP_001284172.1| hypothetical protein MRA_2831 [Mycobacterium tuberculosis H37Ra]
gi|167967620|ref|ZP_02549897.1| hypothetical protein MtubH3_06126 [Mycobacterium tuberculosis
H37Ra]
10 more sequence titles
Length=384
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/101 (79%), Positives = 87/101 (87%), Gaps = 0/101 (0%)
Query 12 VVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY 71
+V+TTGMGRSTAR+MLTGP LP PAEQVDGR LR RGFSD+ARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 72 LVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
LVVM +LWLPL AAGDLDKP TEA+VAELKA + +R
Sbjct 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDR 101
>gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166 [Mycobacterium tuberculosis KZN
1435]
gi|289553405|ref|ZP_06442615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|253319611|gb|ACT24214.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289438037|gb|EFD20530.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328457881|gb|AEB03304.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295655|gb|AEJ47766.1| hypothetical protein CCDC5079_2576 [Mycobacterium tuberculosis
CCDC5079]
Length=383
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 87/100 (87%), Gaps = 0/100 (0%)
Query 13 VATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKYL 72
++TTGMGRSTAR+MLTGP LP PAEQVDGR LR RGFSD+ARALLEHVWALMGMPCGKYL
Sbjct 1 MSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYL 60
Query 73 VVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
VVM +LWLPL+ AAGDLDKP TEA+VAELKA + +R
Sbjct 61 VVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDR 100
>gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 [Mycobacterium africanum GM041182]
gi|339332174|emb|CCC27882.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=384
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/101 (78%), Positives = 87/101 (87%), Gaps = 0/101 (0%)
Query 12 VVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY 71
+V+TTGMGRSTAR+MLTGP LP PAEQ DGR LR RGFSD+ARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQADGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 72 LVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
LVVM +LWLPL+ AAGDLDKP TEA+VAELKA + +R
Sbjct 61 LVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDR 101
>gi|167967622|ref|ZP_02549899.1| hypothetical protein MtubH3_06136 [Mycobacterium tuberculosis
H37Ra]
Length=75
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/75 (99%), Positives = 75/75 (100%), Gaps = 0/75 (0%)
Query 60 VWALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAG 119
+WALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAG
Sbjct 1 MWALMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRMPHWAAG 60
Query 120 TLPDGFPARAVRTRT 134
TLPDGFPARAVRTRT
Sbjct 61 TLPDGFPARAVRTRT 75
>gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevibacterium linens]
Length=418
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/107 (64%), Positives = 82/107 (77%), Gaps = 0/107 (0%)
Query 6 GKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMG 65
+ILD V+ATTGMGRSTAR+MLTGPRLP P E VD R LRP+ +SD +R LLEHVWALMG
Sbjct 30 SRILDEVMATTGMGRSTARRMLTGPRLPDPGEHVDKRRLRPKTYSDASRVLLEHVWALMG 89
Query 66 MPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANR 112
MPCGKY VVM +WLPLL AGDLD P V+ ++ EL++ + +R
Sbjct 90 MPCGKYFVVMLPMWLPLLEQAGDLDHPFVSATAIEELESMSAATIDR 136
>gi|340627805|ref|YP_004746257.1| hypothetical protein MCAN_28321 [Mycobacterium canettii CIPT
140010059]
gi|340005995|emb|CCC45163.1| putative uncharacterised protein [Mycobacterium canettii CIPT
140010059]
Length=70
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/69 (96%), Positives = 66/69 (96%), Gaps = 0/69 (0%)
Query 18 MGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKYLVVMHD 77
MGR TARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKY VVM D
Sbjct 1 MGRLTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALMGMPCGKYRVVMLD 60
Query 78 LWLPLLTAA 86
LWLPLLTAA
Sbjct 61 LWLPLLTAA 69
>gi|338753668|gb|AEI96657.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
Length=438
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/88 (47%), Positives = 51/88 (58%), Gaps = 1/88 (1%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
+ G ILD + T G+GRSTAR++L G R RP +SD++R LL VW
Sbjct 27 KQKGVILDRMCETLGIGRSTARRLLAQAGQHGNGAVPAARE-RPCRYSDQSRQLLVRVWV 85
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDLD 90
LM MPCGKYL M WLP+L G+LD
Sbjct 86 LMDMPCGKYLKAMLPQWLPVLRDCGELD 113
>gi|296454382|ref|YP_003661525.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296183813|gb|ADH00695.1| Integrase core domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length=432
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/88 (47%), Positives = 51/88 (58%), Gaps = 1/88 (1%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
+ G ILD + T G+GRSTAR++L G R RP +SD++R LL VW
Sbjct 21 KQKGVILDRMCETLGIGRSTARRLLAQAGQHGNGAVPAARE-RPCRYSDQSRQLLVRVWV 79
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDLD 90
LM MPCGKYL M WLP+L G+LD
Sbjct 80 LMDMPCGKYLKAMLPQWLPVLRDCGELD 107
>gi|296454294|ref|YP_003661437.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296183725|gb|ADH00607.1| Integrase core domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length=432
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/88 (47%), Positives = 51/88 (58%), Gaps = 1/88 (1%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
+ G ILD + T G+GRSTAR++L G R RP +SD++R LL VW
Sbjct 21 KQKGVILDRMCETLGIGRSTARRLLAQAGQHGNGAVPAARE-RPCRYSDQSRQLLVRVWV 79
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDLD 90
LM MPCGKYL M WLP+L G+LD
Sbjct 80 LMDMPCGKYLKAMLPQWLPVLRDCGELD 107
>gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacterium longum subsp. longum F8]
Length=436
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/91 (39%), Positives = 52/91 (58%), Gaps = 11/91 (12%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLT----GPRLPGPAEQVDGRSLRPRGFSDEARALLE 58
+ G+ILD + + +GRSTAR+ L G P P E++ + +S+++R LL
Sbjct 27 KDKGRILDEMCSVLAIGRSTARRRLAEAGRGRPSPPPEERL-------KRYSEQSRDLLV 79
Query 59 HVWALMGMPCGKYLVVMHDLWLPLLTAAGDL 89
VW +M +PC KYL M WLP+L A G+L
Sbjct 80 RVWLMMDLPCAKYLKAMLPTWLPMLRAHGEL 110
>gi|325963578|ref|YP_004241484.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323469665|gb|ADX73350.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
Length=318
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/77 (45%), Positives = 43/77 (56%), Gaps = 1/77 (1%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
RG +ILD +VA TG R +R+ + A R RPR FS +A +L+HVW
Sbjct 23 RGKSEILDSLVAATGWTRDHSRRAIRVALQRKGAAHEQQRRHRPRKFSYDALVVLQHVWR 82
Query 63 LMGMPCGKYL-VVMHDL 78
L+G P GKYL VM DL
Sbjct 83 LVGQPSGKYLAAVMDDL 99
>gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258555333|gb|ACV78275.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 59/124 (48%), Gaps = 6/124 (4%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRL--PGPAEQVDGRSLRPRG--FSDEARALLE 58
R G+ILD VV+ TG R AR+ LT PG QV R + R FS EA +L+
Sbjct 21 RTKGRILDEVVSVTGWSRDNARRRLTSAAQCPPGGGRQVAQRPRKQRANKFSYEAVKVLQ 80
Query 59 HVWALMGMPCGKYLVVMHDLWLPLLTAAGDL-DKPLVTEASV-AELKATALPGANRMPHW 116
VWA G CGKYL D L L G+L D ASV AEL A + +R
Sbjct 81 RVWAASGGQCGKYLAASMDTQLDGLERHGELVDGECRYSASVRAELLAMSPATIDRYLRT 140
Query 117 AAGT 120
A T
Sbjct 141 AKAT 144
>gi|315656886|ref|ZP_07909773.1| transposase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315492841|gb|EFU82445.1| transposase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length=104
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (40%), Positives = 41/71 (58%), Gaps = 1/71 (1%)
Query 5 NGKILDPVVATTGMGRSTARQMLTGPRLPGP-AEQVDGRSLRPRGFSDEARALLEHVWAL 63
G++LD +TG+ R+TAR+ LT P ++D R +R +S A+ +L+ VW L
Sbjct 30 KGRVLDSFCESTGLSRATARRYLTSDVTGNPGVVRIDYRKVRATKYSTVAKRILQRVWVL 89
Query 64 MGMPCGKYLVV 74
G CGKYL V
Sbjct 90 SGCQCGKYLAV 100
>gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258554360|gb|ACV77302.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/91 (43%), Positives = 46/91 (51%), Gaps = 4/91 (4%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRL--PGPAEQVDGRSLRPRG--FSDEARALLE 58
R G+ILD VV+ TG R AR+ LT PG QV R + R FS EA +L+
Sbjct 21 RTKGRILDEVVSVTGWSRDNARRRLTSAAQCPPGGGRQVAQRPRKQRANKFSYEALKVLQ 80
Query 59 HVWALMGMPCGKYLVVMHDLWLPLLTAAGDL 89
VWA G CGKYL D L L G+L
Sbjct 81 RVWAASGGQCGKYLAASMDTQLDGLERHGEL 111
>gi|338755106|gb|AEI98095.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
gi|338755216|gb|AEI98205.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
Length=377
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/46 (57%), Positives = 31/46 (68%), Gaps = 0/46 (0%)
Query 45 RPRGFSDEARALLEHVWALMGMPCGKYLVVMHDLWLPLLTAAGDLD 90
RP +SD++R LL VW LM MPCGKYL M WLP+L G+LD
Sbjct 7 RPCRYSDQSRQLLVRVWVLMDMPCGKYLKAMLPQWLPVLRDCGELD 52
>gi|298346653|ref|YP_003719340.1| putative transposase [Mobiluncus curtisii ATCC 43063]
gi|304389638|ref|ZP_07371600.1| possible transposase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|298236714|gb|ADI67846.1| possible transposase [Mobiluncus curtisii ATCC 43063]
gi|304327191|gb|EFL94427.1| possible transposase [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length=104
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/71 (40%), Positives = 40/71 (57%), Gaps = 1/71 (1%)
Query 5 NGKILDPVVATTGMGRSTARQMLTGPRLPGP-AEQVDGRSLRPRGFSDEARALLEHVWAL 63
G++LD +TG+ R+TAR+ LT P ++D R R +S A+ +L+ VW L
Sbjct 30 KGRVLDSFCESTGLSRATARRYLTSDVTGNPGVVRIDYRKARATKYSTVAKRILQRVWVL 89
Query 64 MGMPCGKYLVV 74
G CGKYL V
Sbjct 90 SGCQCGKYLAV 100
>gi|260906251|ref|ZP_05914573.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=194
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (37%), Positives = 46/91 (51%), Gaps = 4/91 (4%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLT--GPRLPGPAEQVDGRSLRPRG--FSDEARALLE 58
+ +L+ V+A TG R AR+ LT PG QV +PR +S +A +L+
Sbjct 27 KNKSAVLNEVIAVTGWTRDNARRRLTQAAKHPPGTGRQVTKHDRKPRARKYSYDAVKILQ 86
Query 59 HVWALMGMPCGKYLVVMHDLWLPLLTAAGDL 89
VWA+ G CGKYL + L LL A +L
Sbjct 87 RVWAISGGQCGKYLHATMRILLDLLEAHNEL 117
>gi|167967623|ref|ZP_02549900.1| hypothetical protein MtubH3_06141 [Mycobacterium tuberculosis
H37Ra]
Length=35
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
Query 1 MGRGNGKILDPVVATTGMGRSTARQM 26
MGRGNGKILDPVVATTGMGRSTARQM
Sbjct 10 MGRGNGKILDPVVATTGMGRSTARQM 35
>gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycobacterium celatum]
gi|13810877|gb|AAK40065.1| Rv3128c-like protein [Mycobacterium celatum]
Length=423
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/89 (45%), Positives = 47/89 (53%), Gaps = 3/89 (3%)
Query 4 GNGKILDPVVATTGMGRSTARQMLTGPRL-PGPAEQVDGRSLRPRG--FSDEARALLEHV 60
G GKILD VVA TG R AR+ LT PGP QV R R R +S +A +L+ V
Sbjct 28 GKGKILDQVVAVTGWSRDNARRRLTAAARPPGPGRQVAKRPRRQRNPKYSYDALKVLQKV 87
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDL 89
WA G CG+YL L L L G+L
Sbjct 88 WAASGGQCGRYLAASMGLQLDALERHGEL 116
>gi|326773219|ref|ZP_08232502.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|326636449|gb|EGE37352.1| conserved hypothetical protein [Actinomyces viscosus C505]
Length=131
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/105 (41%), Positives = 54/105 (52%), Gaps = 4/105 (3%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTG--PRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
+ G+ILD V A TG R AR+ L R PG + R R R +S +A +L+ V
Sbjct 27 KDKGRILDEVCAVTGWSRDNARRRLVAAAKRPPGRRKSA-ERRARARRYSYDALKVLQRV 85
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDL-DKPLVTEASVAELKA 104
W G CGKYL L L LL A+G+L D+P T A EL A
Sbjct 86 WPASGGQCGKYLKESMPLLLDLLEASGELDDEPRYTPAVSDELVA 130
>gi|326773200|ref|ZP_08232483.1| transposase [Actinomyces viscosus C505]
gi|326636430|gb|EGE37333.1| transposase [Actinomyces viscosus C505]
Length=136
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/105 (41%), Positives = 54/105 (52%), Gaps = 4/105 (3%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTG--PRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
+ G+ILD V A TG R AR+ L R PG + R R R +S +A +L+ V
Sbjct 27 KDKGRILDEVCAVTGWSRDNARRRLVAAAKRPPGRRKSA-ERRARARRYSYDALKVLQRV 85
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDL-DKPLVTEASVAELKA 104
W G CGKYL L L LL A+G+L D+P T A EL A
Sbjct 86 WPASGGQCGKYLKESMPLLLDLLEASGELDDEPRYTPAVSDELVA 130
>gi|77454858|ref|YP_345726.1| putative transposase [Rhodococcus erythropolis PR4]
gi|77019858|dbj|BAE46234.1| putative transposase [Rhodococcus erythropolis PR4]
Length=164
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 44/89 (50%), Gaps = 3/89 (3%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLT--GPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
+ G++LD TG+ RS AR L G R P RS + +S +AR +L+H+
Sbjct 27 KDKGRMLDEFCELTGLSRSRARHALVEAGSRAPNVVRMDRRRSRPRK-YSADAREVLKHL 85
Query 61 WALMGMPCGKYLVVMHDLWLPLLTAAGDL 89
W L G CG YL L L L A G+L
Sbjct 86 WVLSGGSCGPYLAAQMVLLLDSLEAHGEL 114
>gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desulfitobacterium hafniense Y51]
gi|89333500|dbj|BAE83095.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=390
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/111 (28%), Positives = 53/111 (48%), Gaps = 3/111 (2%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
+G +IL+ V + TG+ R A ++L G + P +S RPR + E L+ +W
Sbjct 29 KGKMEILNYVCSATGLSRDRAARVLRGEKRPKTKHSSRKKSGRPRVYDFEVCQALKTIWT 88
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATALPGANRM 113
+M CGK L + L L G+L +E ++ +L+ + +R+
Sbjct 89 IMDFACGKRLAEAMEDILDALLRFGELR---CSEDTLRKLRRMSASSIDRL 136
>gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=323
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/71 (37%), Positives = 35/71 (50%), Gaps = 6/71 (8%)
Query 8 ILDPVVATTGMGRSTARQMLT------GPRLPGPAEQVDGRSLRPRGFSDEARALLEHVW 61
ILD V TG R ARQ L R +D R + R +S +A +L++VW
Sbjct 33 ILDAVTDITGWNRDHARQQLMRRTRQPKGRANATVAVIDRRKTKARKYSYDAIKILQYVW 92
Query 62 ALMGMPCGKYL 72
++ G CGKYL
Sbjct 93 SVAGGICGKYL 103
>gi|260906447|ref|ZP_05914769.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=280
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/71 (37%), Positives = 35/71 (50%), Gaps = 6/71 (8%)
Query 8 ILDPVVATTGMGRSTARQMLT------GPRLPGPAEQVDGRSLRPRGFSDEARALLEHVW 61
ILD V TG R ARQ L R +D R + R +S +A +L++VW
Sbjct 33 ILDAVTDITGWNRDHARQQLMRRTRQPKGRANATVAVIDRRKTKARKYSYDAIKILQYVW 92
Query 62 ALMGMPCGKYL 72
++ G CGKYL
Sbjct 93 SVAGGICGKYL 103
>gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=430
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (37%), Positives = 35/71 (50%), Gaps = 6/71 (8%)
Query 8 ILDPVVATTGMGRSTARQMLT------GPRLPGPAEQVDGRSLRPRGFSDEARALLEHVW 61
ILD V TG R ARQ L R +D R + R +S +A +L++VW
Sbjct 33 ILDAVTDITGWNRDHARQQLMRRTRQPKGRANATVAVIDRRKTKARKYSYDAIKILQYVW 92
Query 62 ALMGMPCGKYL 72
++ G CGKYL
Sbjct 93 SVAGGICGKYL 103
>gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
gi|333487729|gb|AEF37121.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (40%), Positives = 38/73 (53%), Gaps = 3/73 (4%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
R +ILD + ATTG R+ AR+ L P + V RS RP + D+ A L W
Sbjct 25 REKSRILDELCATTGWHRNHARKALKSALQP---KIVTARSPRPVKYGDDVIAALVLCWT 81
Query 63 LMGMPCGKYLVVM 75
++GMP GK L M
Sbjct 82 VLGMPAGKRLAPM 94
>gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
gi|333486767|gb|AEF36159.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (40%), Positives = 38/73 (53%), Gaps = 3/73 (4%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
R +ILD + ATTG R+ AR+ L P + V RS RP + D+ A L W
Sbjct 25 REKSRILDELCATTGWHRNHARKALKSALQP---KIVTARSPRPVKYGDDVIAALVLCWT 81
Query 63 LMGMPCGKYLVVM 75
++GMP GK L M
Sbjct 82 VLGMPAGKRLAPM 94
>gi|260907002|ref|ZP_05915324.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=389
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 37/73 (51%), Gaps = 4/73 (5%)
Query 3 RGNGKILDPVVATTGMGRSTARQML---TGPRLPGPAEQVDGRSLRPRGFSDEARALLEH 59
+ G ILD +V TG R R++L T + P P E D R +S EARA+LE
Sbjct 16 QDKGWILDEIVVMTGWSRDHVRRLLAQLTRGQKPLP-EDTDEPRHREGKYSHEARAVLEK 74
Query 60 VWALMGMPCGKYL 72
VW G GKYL
Sbjct 75 VWDWSGRQSGKYL 87
>gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
gi|119956223|gb|ABM13228.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=410
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 37/73 (51%), Gaps = 3/73 (4%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
RG +ILD + A TG RS AR+ LT P V R+ RP + E A L W
Sbjct 25 RGKTRILDELCANTGWHRSHARKALTAALAP---TLVAVRAPRPVTYGPEVIAALTVCWT 81
Query 63 LMGMPCGKYLVVM 75
++GMP GK L M
Sbjct 82 VLGMPAGKRLAPM 94
>gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Mycobacterium intracellulare ATCC
13950]
Length=417
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
R +ILD + A TG R+ AR+ L +P V R+ RP + D+ A L W
Sbjct 32 RAKSRILDELCANTGWHRNHARKALKAALVPTV---VTSRNPRPVKYGDDVIAALIRCWV 88
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAEL 102
++ P GK L M + +L G+ L+ + + AEL
Sbjct 89 VLERPAGKRLAPMLTELVAVLRYFGE----LIIDDATAEL 124
>gi|226362065|ref|YP_002779843.1| transposase [Rhodococcus opacus B4]
gi|226240550|dbj|BAH50898.1| putative transposase [Rhodococcus opacus B4]
Length=191
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/135 (32%), Positives = 57/135 (43%), Gaps = 34/135 (25%)
Query 4 GNGKILDPVVATTGMGRSTARQML---TGPRLPGPAEQVDGRSLRPRGFSDEARALLEHV 60
G G+ILD + ATTG R+ AR+ L PR+ P R RP + + A L
Sbjct 26 GKGRILDELCATTGWHRNHARKALAQACTPRIVRP------RVPRPPKYGPKVVAALIFC 79
Query 61 WALMGMPCGKYL----------------VVMHDLWLPLL--TAAGDLDKPLVTEASVAEL 102
WA++ MP GK L + + D LL +A +D+ L TE EL
Sbjct 80 WAVLRMPAGKRLAPILPELVGVLRRFDELDIDDATAALLMGMSAATIDRRLATERKKHEL 139
Query 103 KATALPGANRMPHWA 117
+ R PH A
Sbjct 140 R-------GRSPHQA 147
>gi|189913477|ref|YP_001964705.1| Putative transposase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167781545|gb|ABZ99841.1| Putative transposase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length=445
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/72 (35%), Positives = 35/72 (49%), Gaps = 12/72 (16%)
Query 8 ILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPR-----GFSDEARALLEHVWA 62
ILD V TG RS AR +L ++ + LRPR + D+ R LE +W
Sbjct 35 ILDQFVEATGFNRSYARTVLR-------KKKDNLIKLRPRKKRLSNYDDDVRFYLEKIWE 87
Query 63 LMGMPCGKYLVV 74
++ CGK LV+
Sbjct 88 ILDRICGKRLVM 99
>gi|189913308|ref|YP_001964537.1| hypothetical protein LEPBI_II0138 [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|167781376|gb|ABZ99673.1| Hypothetical protein LEPBI_II0138 [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length=445
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/72 (35%), Positives = 35/72 (49%), Gaps = 12/72 (16%)
Query 8 ILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPR-----GFSDEARALLEHVWA 62
ILD V TG RS AR +L ++ + LRPR + D+ R LE +W
Sbjct 35 ILDQFVEATGFNRSYARTVLR-------KKKDNLIKLRPRKKRLSNYDDDVRFYLEKIWE 87
Query 63 LMGMPCGKYLVV 74
++ CGK LV+
Sbjct 88 ILDRICGKRLVM 99
>gi|189913142|ref|YP_001965030.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167777818|gb|ABZ96117.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
Length=442
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/72 (35%), Positives = 35/72 (49%), Gaps = 12/72 (16%)
Query 8 ILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPR-----GFSDEARALLEHVWA 62
ILD V TG RS AR +L ++ + LRPR + D+ R LE +W
Sbjct 32 ILDQFVEATGFNRSYARTVLR-------KKKDNLIKLRPRKKRLSNYDDDVRFYLEKIWE 84
Query 63 LMGMPCGKYLVV 74
++ CGK LV+
Sbjct 85 ILDRICGKRLVM 96
>gi|189909826|ref|YP_001961381.1| ISLbi1 transposase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|189911809|ref|YP_001963364.1| ISLbi1 transposase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|189912019|ref|YP_001963574.1| ISLbi1 transposase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|189912982|ref|YP_001964871.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167774502|gb|ABZ92803.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776485|gb|ABZ94786.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776695|gb|ABZ94996.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167777658|gb|ABZ95958.1| Transposase,ISLbi1 [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
Length=442
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 25/72 (35%), Positives = 35/72 (49%), Gaps = 12/72 (16%)
Query 8 ILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPR-----GFSDEARALLEHVWA 62
ILD V TG RS AR +L ++ + LRPR + D+ R LE +W
Sbjct 32 ILDQFVEATGFNRSYARTVLR-------KKKDNLIKLRPRKKRLSNYDDDVRFYLEKIWE 84
Query 63 LMGMPCGKYLVV 74
++ CGK LV+
Sbjct 85 ILDRICGKRLVM 96
>gi|13488249|ref|NP_085773.1| hypothetical protein mlr9230 [Mesorhizobium loti MAFF303099]
gi|14028022|dbj|BAB54614.1| mlr9230 [Mesorhizobium loti MAFF303099]
Length=504
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/103 (28%), Positives = 41/103 (40%), Gaps = 5/103 (4%)
Query 5 NGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALM 64
+ILD V TG R A ++L R GP GR RPR + + R L +W
Sbjct 28 KARILDEFVVITGFHRKHAMRLLR--RREGP---FSGRRARPRIYDEAERNALILLWEAS 82
Query 65 GMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATAL 107
CGK L + + + + G D L + + A +
Sbjct 83 DRVCGKRLKALLSVLIEAMERHGHFDPALEIRGKLLAMSAATI 125
>gi|218516977|ref|ZP_03513817.1| integrase catalytic region [Rhizobium etli 8C-3]
gi|327191891|gb|EGE58881.1| integrase catalytic region [Rhizobium etli CNPAF512]
Length=466
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 50/118 (43%), Gaps = 24/118 (20%)
Query 5 NGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALM 64
++LD VA TG R A ++L G R P GR R + D+ RA L VW
Sbjct 23 KARMLDEFVALTGFHRKHAMRLLRGERKPAKGGPRPGR----RVYGDDVRAALVVVWEAS 78
Query 65 GMPCGKYLVVMHDLWLPLLTAA------GDLD----------KPLVTEASVAELKATA 106
CGK L H L LP L A GD++ P + + E+KA+A
Sbjct 79 DRICGKRL---HPL-LPTLIEAMERHGHGDMNSETRRRLLTMSPATIDRVLKEIKASA 132
>gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239505573|gb|ACR79060.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/87 (27%), Positives = 34/87 (40%), Gaps = 0/87 (0%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
+ +ILD T RS A +L G A + R + + + L +W
Sbjct 18 KEKSEILDEFTRVTKYNRSYASFLLRGALKKRKATSPSQKKGRKKKYDHKVFVKLVKIWE 77
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDL 89
+M PCGK L + D + L G L
Sbjct 78 IMDFPCGKRLEAVMDEVIDNLVRNGHL 104
>gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239505602|gb|ACR79089.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/105 (24%), Positives = 41/105 (40%), Gaps = 0/105 (0%)
Query 3 RGNGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWA 62
+ +ILD T RS A +L G A + R + + + L +W
Sbjct 18 KEKSEILDEFTRVTKYNRSYASFLLRGALKKRKATSPSQKKGRKKKYDHKVFVKLVKIWE 77
Query 63 LMGMPCGKYLVVMHDLWLPLLTAAGDLDKPLVTEASVAELKATAL 107
+M PCGK L + D + L G L T+ + + A+ +
Sbjct 78 IMDFPCGKRLEAVMDEVIDNLVRNGHLTLAEETKRKLLSISASTI 122
>gi|150377164|ref|YP_001313760.1| integrase catalytic region [Sinorhizobium medicae WSM419]
gi|150378013|ref|YP_001314608.1| integrase catalytic protein [Sinorhizobium medicae WSM419]
gi|150031711|gb|ABR63827.1| Integrase catalytic region [Sinorhizobium medicae WSM419]
gi|150032560|gb|ABR64675.1| Integrase catalytic region [Sinorhizobium medicae WSM419]
Length=507
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/118 (33%), Positives = 50/118 (43%), Gaps = 24/118 (20%)
Query 5 NGKILDPVVATTGMGRSTARQMLTGPRLPGPAEQVDGRSLRPRGFSDEARALLEHVWALM 64
++LD VA TG R A ++L G R P GR R + D+ RA L VW
Sbjct 28 KARMLDEFVALTGFHRKHAMRLLRGDREPAKGGPRPGR----RVYGDDVRAALVGVWEAS 83
Query 65 GMPCGKYLVVMHDLWLPLLTAA------GDLD----------KPLVTEASVAELKATA 106
CGK L H L LP L A GD++ P + + E+KA+A
Sbjct 84 DRICGKRL---HPL-LPTLIEAMERHGHGDMNCETRRQLLAMSPATIDRVLKEIKASA 137
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129924441710
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40