BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2806
Length=63
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609943|ref|NP_217322.1| hypothetical protein Rv2806 [Mycoba... 128 3e-28
gi|340627806|ref|YP_004746258.1| hypothetical protein MCAN_28331... 127 7e-28
gi|289570986|ref|ZP_06451213.1| membrane protein [Mycobacterium ... 100 1e-19
gi|118464878|ref|YP_881459.1| hypothetical protein MAV_2255 [Myc... 93.6 9e-18
gi|118619576|ref|YP_907908.1| hypothetical protein MUL_4459 [Myc... 73.9 8e-12
gi|183984575|ref|YP_001852866.1| hypothetical protein MMAR_4608 ... 70.1 1e-10
gi|118465172|ref|YP_879972.1| hypothetical protein MAV_0693 [Myc... 48.9 3e-04
gi|342858513|ref|ZP_08715168.1| hypothetical protein MCOL_06546 ... 47.0 9e-04
>gi|15609943|ref|NP_217322.1| hypothetical protein Rv2806 [Mycobacterium tuberculosis H37Rv]
gi|15842343|ref|NP_337380.1| hypothetical protein MT2873 [Mycobacterium tuberculosis CDC1551]
gi|31793982|ref|NP_856475.1| hypothetical protein Mb2829 [Mycobacterium bovis AF2122/97]
74 more sequence titles
Length=63
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/63 (99%), Positives = 63/63 (100%), Gaps = 0/63 (0%)
Query 1 VKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI 60
+KTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI
Sbjct 1 MKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI 60
Query 61 NRQ 63
NRQ
Sbjct 61 NRQ 63
>gi|340627806|ref|YP_004746258.1| hypothetical protein MCAN_28331 [Mycobacterium canettii CIPT
140010059]
gi|340005996|emb|CCC45164.1| putative membrane protein [Mycobacterium canettii CIPT 140010059]
Length=63
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/63 (97%), Positives = 63/63 (100%), Gaps = 0/63 (0%)
Query 1 VKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI 60
+KTNPRYGPAFY+VMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI
Sbjct 1 MKTNPRYGPAFYAVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI 60
Query 61 NRQ 63
NRQ
Sbjct 61 NRQ 63
>gi|289570986|ref|ZP_06451213.1| membrane protein [Mycobacterium tuberculosis T17]
gi|289544740|gb|EFD48388.1| membrane protein [Mycobacterium tuberculosis T17]
Length=50
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/50 (98%), Positives = 50/50 (100%), Gaps = 0/50 (0%)
Query 14 VMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ 63
+MTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ
Sbjct 1 MMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ 50
>gi|118464878|ref|YP_881459.1| hypothetical protein MAV_2255 [Mycobacterium avium 104]
gi|118166165|gb|ABK67062.1| putative membrane protein [Mycobacterium avium 104]
Length=63
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/63 (72%), Positives = 52/63 (83%), Gaps = 0/63 (0%)
Query 1 VKTNPRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHI 60
+KTNPRY AFY+VM+VL LALFVLNVCTHG+ LGLI TGGLAV+MGY YR W GKR
Sbjct 1 MKTNPRYLAAFYTVMSVLSLALFVLNVCTHGTMLGLIGTGGLAVVMGYNAYRAWFGKRRT 60
Query 61 NRQ 63
++Q
Sbjct 61 SQQ 63
>gi|118619576|ref|YP_907908.1| hypothetical protein MUL_4459 [Mycobacterium ulcerans Agy99]
gi|118571686|gb|ABL06437.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=77
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/59 (63%), Positives = 42/59 (72%), Gaps = 3/59 (5%)
Query 5 PRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ 63
P+Y FY+ M+ L L LFV+NVC+HGS LGLISTGGLAVLM R WS KRH N Q
Sbjct 22 PQYSATFYAAMSGLALVLFVINVCSHGSALGLISTGGLAVLM---VCRAWSAKRHRNHQ 77
>gi|183984575|ref|YP_001852866.1| hypothetical protein MMAR_4608 [Mycobacterium marinum M]
gi|183177901|gb|ACC43011.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=77
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/59 (62%), Positives = 41/59 (70%), Gaps = 3/59 (5%)
Query 5 PRYGPAFYSVMTVLFLALFVLNVCTHGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ 63
P+Y FY+ M+ L L FV+NVC+HGS LGLISTGGLAVLM R WS KRH N Q
Sbjct 22 PQYSATFYAAMSGLALVPFVINVCSHGSALGLISTGGLAVLM---VCRAWSAKRHRNYQ 77
>gi|118465172|ref|YP_879972.1| hypothetical protein MAV_0693 [Mycobacterium avium 104]
gi|118166459|gb|ABK67356.1| putative membrane protein [Mycobacterium avium 104]
Length=39
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/34 (68%), Positives = 25/34 (74%), Gaps = 0/34 (0%)
Query 30 HGSTLGLISTGGLAVLMGYIGYRGWSGKRHINRQ 63
HG+ LGLI TGGLA LMGY YR W KRH +RQ
Sbjct 6 HGTWLGLICTGGLAELMGYNAYRAWFAKRHQSRQ 39
>gi|342858513|ref|ZP_08715168.1| hypothetical protein MCOL_06546 [Mycobacterium colombiense CECT
3035]
gi|342134217|gb|EGT87397.1| hypothetical protein MCOL_06546 [Mycobacterium colombiense CECT
3035]
Length=50
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/29 (80%), Positives = 24/29 (83%), Gaps = 0/29 (0%)
Query 30 HGSTLGLISTGGLAVLMGYIGYRGWSGKR 58
HG+ LGLISTGGLAVLMGY YR W GKR
Sbjct 20 HGTWLGLISTGGLAVLMGYNAYRAWFGKR 48
Lambda K H
0.327 0.143 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131230491224
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40