BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2807
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycoba... 797 0.0
gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycoba... 794 0.0
gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 ... 793 0.0
gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 ... 793 0.0
gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166... 792 0.0
gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Myc... 792 0.0
gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491... 711 0.0
gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevi... 580 2e-163
gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [... 436 3e-120
gi|338753668|gb|AEI96657.1| integrase core domain-containing pro... 367 1e-99
gi|296454294|ref|YP_003661437.1| integrase core domain-containin... 367 2e-99
gi|296454382|ref|YP_003661525.1| integrase core domain-containin... 365 6e-99
gi|338755106|gb|AEI98095.1| integrase core domain-containing pro... 354 2e-95
gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Na... 340 2e-91
gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Na... 338 6e-91
gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacter... 337 1e-90
gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycob... 327 2e-87
gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brev... 313 4e-83
gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobilu... 296 4e-78
gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisi... 296 5e-78
gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacter... 293 3e-77
gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobilu... 293 5e-77
gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brev... 235 7e-60
gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desul... 231 2e-58
gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycoba... 229 9e-58
gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycob... 225 1e-56
gi|325963578|ref|YP_004241484.1| integrase family protein [Arthr... 223 5e-56
gi|332296340|ref|YP_004438263.1| Integrase catalytic region [The... 221 1e-55
gi|332295603|ref|YP_004437526.1| Integrase catalytic region [The... 221 2e-55
gi|339627742|ref|YP_004719385.1| integrase catalytic subunit [Su... 207 2e-51
gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [My... 206 4e-51
gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Myc... 206 5e-51
gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [My... 206 7e-51
gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Su... 205 8e-51
gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kos... 201 2e-49
gi|296108471|ref|YP_003620172.1| hypothetical protein lpa_04105 ... 201 2e-49
gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kos... 200 3e-49
gi|239617798|ref|YP_002941120.1| Integrase catalytic region [Kos... 200 3e-49
gi|333993254|ref|YP_004525867.1| integrase domain-containing pro... 199 7e-49
gi|333993354|ref|YP_004525967.1| integrase domain-containing pro... 199 8e-49
gi|333994907|ref|YP_004527520.1| integrase domain-containing pro... 199 8e-49
gi|239618188|ref|YP_002941510.1| Integrase catalytic region [Kos... 199 8e-49
gi|153803772|ref|ZP_01958358.1| integrase domain protein [Vibrio... 199 9e-49
gi|333995913|ref|YP_004528526.1| integrase domain-containing pro... 199 9e-49
gi|333994180|ref|YP_004526793.1| integrase domain-containing pro... 199 1e-48
gi|239617520|ref|YP_002940842.1| Integrase catalytic region [Kos... 195 8e-48
gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [... 195 9e-48
gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brev... 192 6e-47
gi|13488249|ref|NP_085773.1| hypothetical protein mlr9230 [Mesor... 189 7e-46
gi|320536591|ref|ZP_08036613.1| integrase core domain protein [T... 188 1e-45
>gi|15609944|ref|NP_217323.1| hypothetical protein Rv2807 [Mycobacterium tuberculosis H37Rv]
gi|148662649|ref|YP_001284172.1| hypothetical protein MRA_2831 [Mycobacterium tuberculosis H37Ra]
gi|167967620|ref|ZP_02549897.1| hypothetical protein MtubH3_06126 [Mycobacterium tuberculosis
H37Ra]
10 more sequence titles
Length=384
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/384 (99%), Positives = 384/384 (100%), Gaps = 0/384 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+VSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP
Sbjct 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR
Sbjct 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ
Sbjct 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR
Sbjct 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE
Sbjct 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
Query 361 ALATARHIDLQSLQPSINRLAKAK 384
ALATARHIDLQSLQPSINRLAKAK
Sbjct 361 ALATARHIDLQSLQPSINRLAKAK 384
>gi|15842344|ref|NP_337381.1| hypothetical protein MT2874 [Mycobacterium tuberculosis CDC1551]
gi|31793983|ref|NP_856476.1| hypothetical protein Mb2830 [Mycobacterium bovis AF2122/97]
gi|148823996|ref|YP_001288750.1| hypothetical protein TBFG_12821 [Mycobacterium tuberculosis F11]
51 more sequence titles
Length=384
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/384 (99%), Positives = 383/384 (99%), Gaps = 0/384 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+VSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
LVVMLELWLPL AAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP
Sbjct 61 LVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR
Sbjct 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ
Sbjct 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR
Sbjct 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE
Sbjct 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
Query 361 ALATARHIDLQSLQPSINRLAKAK 384
ALATARHIDLQSLQPSINRLAKAK
Sbjct 361 ALATARHIDLQSLQPSINRLAKAK 384
>gi|306798716|ref|ZP_07437018.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
gi|308341096|gb|EFP29947.1| hypothetical protein TMFG_03703 [Mycobacterium tuberculosis SUMu006]
Length=384
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/384 (99%), Positives = 383/384 (99%), Gaps = 0/384 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+VSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
LVVMLELWLPL AA+GDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP
Sbjct 61 LVVMLELWLPLVAASGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR
Sbjct 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ
Sbjct 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR
Sbjct 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE
Sbjct 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
Query 361 ALATARHIDLQSLQPSINRLAKAK 384
ALATARHIDLQSLQPSINRLAKAK
Sbjct 361 ALATARHIDLQSLQPSINRLAKAK 384
>gi|339632818|ref|YP_004724460.1| hypothetical protein MAF_28120 [Mycobacterium africanum GM041182]
gi|339332174|emb|CCC27882.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=384
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/384 (99%), Positives = 382/384 (99%), Gaps = 0/384 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+VSTTGMGRSTARRMLTGPGLPEPAEQ DGRRLRARGFSDDARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQADGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
LVVMLELWLPL AAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP
Sbjct 61 LVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR
Sbjct 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ
Sbjct 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR
Sbjct 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE
Sbjct 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
Query 361 ALATARHIDLQSLQPSINRLAKAK 384
ALATARHIDLQSLQPSINRLAKAK
Sbjct 361 ALATARHIDLQSLQPSINRLAKAK 384
>gi|253798108|ref|YP_003031109.1| hypothetical protein TBMG_01166 [Mycobacterium tuberculosis KZN
1435]
gi|289553405|ref|ZP_06442615.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|253319611|gb|ACT24214.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289438037|gb|EFD20530.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|328457881|gb|AEB03304.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
gi|339295655|gb|AEJ47766.1| hypothetical protein CCDC5079_2576 [Mycobacterium tuberculosis
CCDC5079]
Length=383
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/383 (99%), Positives = 382/383 (99%), Gaps = 0/383 (0%)
Query 2 VSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYL 61
+STTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYL
Sbjct 1 MSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYL 60
Query 62 VVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPS 121
VVMLELWLPL AAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPS
Sbjct 61 VVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPS 120
Query 122 PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRN 181
PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRN
Sbjct 121 PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRN 180
Query 182 NAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQA 241
NAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQA
Sbjct 181 NAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQA 240
Query 242 HVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRK 301
HVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRK
Sbjct 241 HVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRK 300
Query 302 RIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA 361
RIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA
Sbjct 301 RIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA 360
Query 362 LATARHIDLQSLQPSINRLAKAK 384
LATARHIDLQSLQPSINRLAKAK
Sbjct 361 LATARHIDLQSLQPSINRLAKAK 383
>gi|121638687|ref|YP_978911.1| hypothetical protein BCG_2825 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991179|ref|YP_002645868.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121494335|emb|CAL72813.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774294|dbj|BAH27100.1| hypothetical protein JTY_2819 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341602725|emb|CCC65401.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=384
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/384 (99%), Positives = 382/384 (99%), Gaps = 0/384 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+VSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY
Sbjct 1 MVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
LVVMLELWLPL AAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP
Sbjct 61 LVVMLELWLPLVAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR
Sbjct 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ
Sbjct 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR
Sbjct 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQ QLLDLAKTKTE
Sbjct 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQTQLLDLAKTKTE 360
Query 361 ALATARHIDLQSLQPSINRLAKAK 384
ALATARHIDLQSLQPSINRLAKAK
Sbjct 361 ALATARHIDLQSLQPSINRLAKAK 384
>gi|340627820|ref|YP_004746272.1| hypothetical protein MCAN_28491 [Mycobacterium canettii CIPT
140010059]
gi|340006010|emb|CCC45180.1| putative uncharacterized protein bcg_2825 [Mycobacterium canettii
CIPT 140010059]
Length=384
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/384 (88%), Positives = 360/384 (94%), Gaps = 0/384 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+V+TTGMGRSTARRMLTGP LP+PAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY
Sbjct 1 MVATTGMGRSTARRMLTGPRLPDPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
LVVML+LWLPL AAAGDLDKPFATEA+VAELKAMSAATVDRYLKPAR+RMRIKGISTTKP
Sbjct 61 LVVMLDLWLPLLAAAGDLDKPFATEASVAELKAMSAATVDRYLKPARDRMRIKGISTTKP 120
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
SPLLRNSI+I TC++EAPK PGVIEADTVAHCGP+LIGEFARTLTMTDLV GWTENASIR
Sbjct 121 SPLLRNSISIRTCAEEAPKAPGVIEADTVAHCGPTLIGEFARTLTMTDLVIGWTENASIR 180
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNA+KWI+EGI+E QQRFPFPM FDSDCGGEFINHDVA WLQARDI QTRSRP+QKNDQ
Sbjct 181 NNASKWIVEGIEELQQRFPFPMVTFDSDCGGEFINHDVAAWLQARDIEQTRSRPHQKNDQ 240
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
AHVESKNNHVVRKHAFYWRYDT +E ELLNRLW LVSLR NFFTPTKKPVGYT+T NGRR
Sbjct 241 AHVESKNNHVVRKHAFYWRYDTEQERELLNRLWRLVSLRLNFFTPTKKPVGYTTTANGRR 300
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
+RIYDKPATPWQRL+AS V+DAQ +S V AR++G NPADLTRQINAIQ QLLDLAKTKTE
Sbjct 301 RRIYDKPATPWQRLKASNVVDAQHISAVTARVDGINPADLTRQINAIQTQLLDLAKTKTE 360
Query 361 ALATARHIDLQSLQPSINRLAKAK 384
ALA ARH+DL++LQPSINRL K K
Sbjct 361 ALAAARHVDLEALQPSINRLVKTK 384
>gi|7648576|gb|AAF65592.1|AF139916_13 hypothetical protein [Brevibacterium linens]
Length=418
Score = 580 bits (1494), Expect = 2e-163, Method: Compositional matrix adjust.
Identities = 265/380 (70%), Positives = 316/380 (84%), Gaps = 0/380 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
V++TTGMGRSTARRMLTGP LP+P E VD RRLR + +SD +R LLEHVWALMGMPCGKY
Sbjct 36 VMATTGMGRSTARRMLTGPRLPDPGEHVDKRRLRPKTYSDASRVLLEHVWALMGMPCGKY 95
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
VVML +WLPL AGDLD PF + A+ EL++MSAAT+DRYL PAR+ M+++GISTTKP
Sbjct 96 FVVMLPMWLPLLEQAGDLDHPFVSATAIEELESMSAATIDRYLAPARQSMQLRGISTTKP 155
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
PLLRNSI + DE P V GVIEADTVAHCGPS +GEFARTLTMTD+VTGWTENASIR
Sbjct 156 PPLLRNSIGLSKTGDEPPTVAGVIEADTVAHCGPSYVGEFARTLTMTDMVTGWTENASIR 215
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
NNA+KWILE + + +FPF + VFDSD G EFINH+VA WLQ RDI QTRSRPY+KNDQ
Sbjct 216 NNASKWILEAVADLDGKFPFELRVFDSDNGSEFINHEVADWLQQRDIDQTRSRPYRKNDQ 275
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
A VESKNNHVVRKHAFYWRYDT EEL LL +LWPLVSLR NFF PTKKPV Y +T +GRR
Sbjct 276 ATVESKNNHVVRKHAFYWRYDTSEELGLLGQLWPLVSLRLNFFVPTKKPVEYATTSDGRR 335
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
+R+YD P TPW+R+ SG+L Q++ ++ R++G NPADLTRQIN IQM+L++L+K+KTE
Sbjct 336 RRVYDSPRTPWRRVLDSGLLTDDQVTAISERVDGVNPADLTRQINQIQMRLIELSKSKTE 395
Query 361 ALATARHIDLQSLQPSINRL 380
A+A +RH+D+ SL+PS+NRL
Sbjct 396 AMAASRHLDMASLKPSMNRL 415
>gi|296169394|ref|ZP_06851017.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295895944|gb|EFG75636.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=242
Score = 436 bits (1121), Expect = 3e-120, Method: Compositional matrix adjust.
Identities = 202/242 (84%), Positives = 217/242 (90%), Gaps = 0/242 (0%)
Query 143 VIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPM 202
+IEADTVAHCGP+LIGEFARTLTMTDLV GWTEN SIRNNA+KWI GI E QQRFPF +
Sbjct 1 MIEADTVAHCGPTLIGEFARTLTMTDLVIGWTENFSIRNNASKWITAGIDELQQRFPFDL 60
Query 203 TVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDT 262
+F DCGGEFINH+VA WLQ RDIAQT SRPYQKNDQAHVESKNNHVVRKHAFYWRYDT
Sbjct 61 VIFALDCGGEFINHEVAAWLQTRDIAQTHSRPYQKNDQAHVESKNNHVVRKHAFYWRYDT 120
Query 263 GEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDA 322
EELELLNRLW LVSLRCNFFTPTKKP+GY++T RR RIYD PATPWQRLQ SG+LDA
Sbjct 121 SEELELLNRLWKLVSLRCNFFTPTKKPIGYSTTAASRRTRIYDTPATPWQRLQESGILDA 180
Query 323 QQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATARHIDLQSLQPSINRLAK 382
QQLS V+ARIEG NPADLTRQIN IQMQLLDLAKTKT+ALA ARHIDL++LQPSI+RLAK
Sbjct 181 QQLSHVSARIEGINPADLTRQINTIQMQLLDLAKTKTDALAAARHIDLEALQPSIDRLAK 240
Query 383 AK 384
AK
Sbjct 241 AK 242
>gi|338753668|gb|AEI96657.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
Length=438
Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 198/395 (51%), Positives = 254/395 (65%), Gaps = 15/395 (3%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ T G+GRSTARR+L G V R R +SD +R LL VW LM MPCGKY
Sbjct 36 MCETLGIGRSTARRLLAQAG-QHGNGAVPAARERPCRYSDQSRQLLVRVWVLMDMPCGKY 94
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML WLP+ G+LD +EL AMSA+T+DRYLKP R+ R KG++ T+P
Sbjct 95 LKAMLPQWLPVLRDCGELDA--YDGFTFSELMAMSASTIDRYLKPLRDAARPKGLAATRP 152
Query 121 S-PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASI 179
+ LLRNSITI SDE +PG +EADTVAHCGPSL GEF RTLT+ D TGWTENAS
Sbjct 153 AGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLTVVDFATGWTENASA 212
Query 180 RNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKND 239
RNNA + + + +QR PF + +D+D G EFIN D LQ DI QTRSRPY+KND
Sbjct 213 RNNAYRNLSQAEAMIEQRLPFTIRSYDNDNGSEFINTDFITHLQQLDIQQTRSRPYRKND 272
Query 240 QAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGR 299
QA VES+NNHVVRKHAFY+RY+ EL+LLN LW LVS++ N FTP+KKPVG +ST +GR
Sbjct 273 QATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLVSVKVNLFTPSKKPVGRSSTRDGR 331
Query 300 RKRIYDKPATPWQRLQ----------ASGVLDAQQLSTVAARIEGFNPADLTRQINAIQM 349
+R+YD+P TPW+RL+ +G + ++ + I NPA+L R+I+AIQ
Sbjct 332 PRRVYDQPTTPWERLKRFDEQDRADGGTGFILPERRDQIERLIAETNPAELVRRIHAIQD 391
Query 350 QLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK 384
QL D+A +T L D+ L ++ ++A +
Sbjct 392 QLEDMAAPRTRRLEKRVGPDMAYLDRTLAKIAGVR 426
>gi|296454294|ref|YP_003661437.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296183725|gb|ADH00607.1| Integrase core domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length=432
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 198/395 (51%), Positives = 254/395 (65%), Gaps = 15/395 (3%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ T G+GRSTARR+L G V R R +SD +R LL VW LM MPCGKY
Sbjct 30 MCETLGIGRSTARRLLAQAG-QHGNGAVPAARERPCRYSDQSRQLLVRVWVLMDMPCGKY 88
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML WLP+ G+LD +EL AMSA+T+DRYLKP R+ R KG++ T+P
Sbjct 89 LKAMLPQWLPVLRDCGELDA--YDGFTFSELMAMSASTIDRYLKPLRDAARPKGLAATRP 146
Query 121 S-PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASI 179
+ LLRNSITI SDE +PG +EADTVAHCGPSL GEF RTLT+ D TGWTENAS
Sbjct 147 AGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLTVVDFATGWTENASA 206
Query 180 RNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKND 239
RNNA + + + +QR PF + +D+D G EFIN D LQ DI QTRSRPY+KND
Sbjct 207 RNNAYRNLSQAEAMIEQRLPFTIRSYDNDNGSEFINTDFITHLQQLDIQQTRSRPYRKND 266
Query 240 QAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGR 299
QA VES+NNHVVRKHAFY+RY+ EL+LLN LW LVS++ N FTP+KKPVG +ST +GR
Sbjct 267 QATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLVSVKVNLFTPSKKPVGRSSTRDGR 325
Query 300 RKRIYDKPATPWQRLQ----------ASGVLDAQQLSTVAARIEGFNPADLTRQINAIQM 349
+R+YD+P TPW+RL+ +G + ++ + I NPA+L R+I+AIQ
Sbjct 326 PRRVYDQPTTPWERLKRFDEQDRADGGTGFILPERRDQIERLIAETNPAELVRRIHAIQD 385
Query 350 QLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK 384
QL D+A +T L D+ L ++ ++A +
Sbjct 386 QLEDMAAPRTRRLEKRVGPDMAYLDRTLAKIAGVR 420
>gi|296454382|ref|YP_003661525.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296183813|gb|ADH00695.1| Integrase core domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length=432
Score = 365 bits (937), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 198/395 (51%), Positives = 254/395 (65%), Gaps = 15/395 (3%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ T G+GRSTARR+L G V R R +SD +R LL VW LM MPCGKY
Sbjct 30 MCETLGIGRSTARRLLAQAG-QHGNGAVPAARERPCRYSDQSRQLLVRVWVLMDMPCGKY 88
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML WLP+ G+LD +EL AMSA+T+DRYLKP R+ R KG++ T+P
Sbjct 89 LKAMLPQWLPVLRDCGELDA--YDGFTFSELMAMSASTIDRYLKPLRDAARPKGLAATRP 146
Query 121 S-PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASI 179
+ LLRNSITI SDE +PG +EADTVAHCGPSL GEF RTLT+ D TGWTENAS
Sbjct 147 AGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSLKGEFCRTLTVVDFATGWTENASA 206
Query 180 RNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKND 239
RNNA + + + +QR PF + +D+D G EFIN D LQ DI QTRSRPY+KND
Sbjct 207 RNNAYRNLSQAEAMIEQRPPFTIRSYDNDNGSEFINTDFITHLQQLDIQQTRSRPYRKND 266
Query 240 QAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGR 299
QA VES+NNHVVRKHAFY+RY+ EL+LLN LW LVS++ N FTP+KKPVG +ST +GR
Sbjct 267 QATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLVSVKVNLFTPSKKPVGRSSTRDGR 325
Query 300 RKRIYDKPATPWQRLQ----------ASGVLDAQQLSTVAARIEGFNPADLTRQINAIQM 349
+R+YD+P TPW+RL+ +G + ++ + I NPA+L R+I+AIQ
Sbjct 326 PRRVYDQPTTPWERLKRFDEQDRADGGTGFILPERRDQIERLIAETNPAELVRRIHAIQD 385
Query 350 QLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK 384
QL D+A +T L D+ L ++ ++A +
Sbjct 386 QLEDMAAPRTRRLEKRVGPDMAYLDRTLAKIAGVR 420
>gi|338755106|gb|AEI98095.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
gi|338755216|gb|AEI98205.1| integrase core domain-containing protein [Bifidobacterium longum
subsp. longum KACC 91563]
Length=377
Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/358 (52%), Positives = 237/358 (67%), Gaps = 14/358 (3%)
Query 38 FSDDARALLEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAA 97
+SD +R LL VW LM MPCGKYL ML WLP+ G+LD +EL AMSA+
Sbjct 11 YSDQSRQLLVRVWVLMDMPCGKYLKAMLPQWLPVLRDCGELDA--YDGFTFSELMAMSAS 68
Query 98 TVDRYLKPARERMRIKGISTTKPS-PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSL 156
T+DRYLKP R+ R KG++ T+P+ LLRNSITI SDE +PG +EADTVAHCGPSL
Sbjct 69 TIDRYLKPLRDAARPKGLAATRPAGELLRNSITIRKASDELDGLPGNVEADTVAHCGPSL 128
Query 157 IGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINH 216
GEF RTLT+ D TGWTENAS RNNA + + + +QR PF + +D+D G EFIN
Sbjct 129 KGEFCRTLTVVDFATGWTENASARNNAYRNLSQAEAMIEQRLPFTIRSYDNDNGSEFINT 188
Query 217 DVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLV 276
D LQ DI QTRSRPY+KNDQA VES+NNHVVRKHAFY+RY+ EL+LLN LW LV
Sbjct 189 DFITHLQQLDIQQTRSRPYRKNDQATVESRNNHVVRKHAFYYRYELA-ELDLLNELWQLV 247
Query 277 SLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQ----------ASGVLDAQQLS 326
S++ N FTP+KKPVG +ST +GR +R+YD+P TPW+RL+ +G + ++
Sbjct 248 SVKVNLFTPSKKPVGRSSTRDGRPRRVYDQPTTPWERLKRFDEQDRADGGTGFILPERRD 307
Query 327 TVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATARHIDLQSLQPSINRLAKAK 384
+ I NPA+L R+I+AIQ QL D+A +T L D+ L ++ ++A +
Sbjct 308 QIERLIAETNPAELVRRIHAIQDQLEDMAAPRTRRLEKRVGPDMAYLDRTLAKIAGVR 365
>gi|258652108|ref|YP_003201264.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258555333|gb|ACV78275.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418
Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/371 (52%), Positives = 229/371 (62%), Gaps = 6/371 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGL--PEPAEQVDGR--RLRARGFSDDARALLEHVWALMGMP 56
VVS TG R ARR LT P QV R + RA FS +A +L+ VWA G
Sbjct 30 VVSVTGWSRDNARRRLTSAAQCPPGGGRQVAQRPRKQRANKFSYEAVKVLQRVWAASGGQ 89
Query 57 CGKYLVVMLELWLP-LEAAAGDLDKPFATEAAV-AELKAMSAATVDRYLKPARERMRIKG 114
CGKYL ++ L LE +D A+V AEL AMS AT+DRYL+ A+ +++G
Sbjct 90 CGKYLAASMDTQLDGLERHGELVDGECRYSASVRAELLAMSPATIDRYLRTAKATDQVRG 149
Query 115 ISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWT 174
+STTKPSPLLR+SI I DE PG E DTVAHCGP+L GEFAR++ +T + TGW
Sbjct 150 VSTTKPSPLLRSSIKIRKAGDEVEAEPGFFEGDTVAHCGPTLRGEFARSVNLTCVHTGWV 209
Query 175 ENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRP 234
S RNNA IL ++ Q PF +T D D GGEF+N V W RDI TRSRP
Sbjct 210 FTRSTRNNAHANILAALQAGVQEIPFAVTGLDFDNGGEFLNRAVIKWAAERDIYFTRSRP 269
Query 235 YQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTS 294
Y+KNDQA +ESKNNH+VR++AFY+RYDT EE LNRLW LV+ R N+ TPT KPVG+
Sbjct 270 YKKNDQATIESKNNHLVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPTIKPVGWGE 329
Query 295 TVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDL 354
GRRKR+YDKP TP RL A+G L Q + A +G NPA L R+I IQ LL L
Sbjct 330 NKAGRRKRLYDKPQTPLSRLLAAGTLSPAQAHELTAYRDGLNPAALAREIADIQAVLLGL 389
Query 355 AKTKTEALATA 365
AK KTE L A
Sbjct 390 AKNKTEQLYLA 400
>gi|258651135|ref|YP_003200291.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258554360|gb|ACV77302.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=418
Score = 338 bits (868), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/371 (51%), Positives = 229/371 (62%), Gaps = 6/371 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGL--PEPAEQVDGR--RLRARGFSDDARALLEHVWALMGMP 56
VVS TG R ARR LT P QV R + RA FS +A +L+ VWA G
Sbjct 30 VVSVTGWSRDNARRRLTSAAQCPPGGGRQVAQRPRKQRANKFSYEALKVLQRVWAASGGQ 89
Query 57 CGKYLVVMLELWLP-LEAAAGDLDKPFATEAAV-AELKAMSAATVDRYLKPARERMRIKG 114
CGKYL ++ L LE +D A+V AEL AMS AT+DRYL+ A+ +++G
Sbjct 90 CGKYLAASMDTQLDGLERHGELVDGEGRYSASVRAELLAMSPATIDRYLRTAKATDQVRG 149
Query 115 ISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWT 174
+STTKPSPLLR+SI I DE PG E DTVAHCGP+L GEFAR++ +T + TGW
Sbjct 150 VSTTKPSPLLRSSIKIRKAGDEVEAEPGFFEGDTVAHCGPTLRGEFARSVNLTCVHTGWV 209
Query 175 ENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRP 234
S RNNA IL ++ Q PF +T D D GGEF+N V W +DI TRSRP
Sbjct 210 FTRSTRNNAHANILAALQAGVQEIPFAVTGLDFDNGGEFLNRAVIKWAAEQDIYFTRSRP 269
Query 235 YQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTS 294
Y+KNDQA +ESKNNH+VR++AFY+RYDT EE LNRLW LV+ R N+ TPT KPVG+
Sbjct 270 YKKNDQATIESKNNHLVRRYAFYYRYDTDEERHALNRLWKLVNDRLNYLTPTIKPVGWGE 329
Query 295 TVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDL 354
GRRKR+YDKP TP RL A+G L Q + A +G NPA L R+I IQ LL L
Sbjct 330 NKAGRRKRLYDKPQTPLSRLLAAGTLSPAQAHELTAYRDGLNPAALAREIAGIQAVLLGL 389
Query 355 AKTKTEALATA 365
AK KTE L A
Sbjct 390 AKNKTEQLYLA 400
>gi|291516953|emb|CBK70569.1| Integrase core domain [Bifidobacterium longum subsp. longum F8]
Length=436
Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 186/394 (48%), Positives = 244/394 (62%), Gaps = 21/394 (5%)
Query 1 VVSTTGMGRSTARRMLT--GPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCG 58
+ S +GRSTARR L G G P P + R + +S+ +R LL VW +M +PC
Sbjct 36 MCSVLAIGRSTARRRLAEAGRGRPSPPPEE-----RLKRYSEQSRDLLVRVWLMMDLPCA 90
Query 59 KYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTT 118
KYL ML WLP+ A G+L A EL+ MS+AT+DRYL+ R+ R +G T
Sbjct 91 KYLKAMLPTWLPMLRAHGELAD--YDGFAFLELERMSSATMDRYLEKTRDAARPRGTVPT 148
Query 119 KPS-PLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENA 177
+P+ LLRNSI I DE +PG +EADTVAHCGPS GEF RTLT+ D+ TGWTENA
Sbjct 149 RPAGELLRNSIAIRKAGDELDGLPGNVEADTVAHCGPSARGEFCRTLTVVDIATGWTENA 208
Query 178 SIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQK 237
S RNNA + + + R PF + +D+D G EFIN D+ WLQ RDI QTRSRPY+K
Sbjct 209 SCRNNAFVNFSKAEETIEGRMPFRIRPYDTDNGSEFINRDLIAWLQERDIEQTRSRPYRK 268
Query 238 NDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVN 297
NDQA VES+NNH+VR+HAF++RY T +EL LLN LW LV ++ N FTP+KKPVG T +
Sbjct 269 NDQATVESRNNHIVRRHAFHYRY-TVDELGLLNELWELVRIKANLFTPSKKPVGRACTRD 327
Query 298 GRRKRIYDKPATPWQRLQ----------ASGVLDAQQLSTVAARIEGFNPADLTRQINAI 347
GR +R+YD+P TPW+RL+ G + + + I NPA+L R+I+AI
Sbjct 328 GRPRRVYDEPRTPWERLKEFDEKDRAAGGPGFILPGKREEIERIIATTNPAELVRRIHAI 387
Query 348 QMQLLDLAKTKTEALATARHIDLQSLQPSINRLA 381
Q +L LA +T LA D+ L ++ R+A
Sbjct 388 QDRLEALAAPRTAQLARRAGPDMAYLNKTLARIA 421
>gi|32455734|ref|NP_862568.1| hypothetical protein pCLPp01 [Mycobacterium celatum]
gi|13810877|gb|AAK40065.1| Rv3128c-like protein [Mycobacterium celatum]
Length=423
Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/348 (51%), Positives = 221/348 (64%), Gaps = 4/348 (1%)
Query 22 PEPAEQVDGRRLRARG--FSDDARALLEHVWALMGMPCGKYLVVMLELWLPLEAAAGDL- 78
P P QV R R R +S DA +L+ VWA G CG+YL + L L G+L
Sbjct 58 PGPGRQVAKRPRRQRNPKYSYDALKVLQKVWAASGGQCGRYLAASMGLQLDALERHGELV 117
Query 79 -DKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEA 137
+ + AEL AMS+AT+DRYL+PA+ R ++KG STTK SPLLR++I I +DE
Sbjct 118 DGQDRYSPQVRAELLAMSSATIDRYLRPAKARDQVKGQSTTKGSPLLRSAIKIRKGTDEV 177
Query 138 PKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQR 197
PG E DTVAHCGP+L GEFARTL +TD+ GW S+RNNA IL +K
Sbjct 178 EASPGFFEGDTVAHCGPTLKGEFARTLNLTDMHIGWVFTRSVRNNAHTHILGALKSGIHE 237
Query 198 FPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFY 257
P+ +T D D G EF+N V W +I TRSRPY+KNDQA +ESKNNH+VRK+AFY
Sbjct 238 IPYEVTGLDFDNGTEFLNKAVIKWAAQMEIFFTRSRPYKKNDQATIESKNNHLVRKYAFY 297
Query 258 WRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQAS 317
+RYDT EE +LNRLW LV+ R N+ TPT KP+GY S +G+R+R+YD+P TP RL A+
Sbjct 298 YRYDTDEERAVLNRLWKLVNDRLNYLTPTIKPIGYGSGRDGQRRRLYDQPMTPLDRLLAA 357
Query 318 GVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATA 365
GVL Q S + A + NPA + RQI +Q +LL LAK KTE L A
Sbjct 358 GVLSPAQESELLAYRDTLNPAAIARQIADLQNRLLLLAKEKTEQLYLA 405
>gi|260907374|ref|ZP_05915696.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=430
Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/334 (48%), Positives = 211/334 (64%), Gaps = 2/334 (0%)
Query 28 VDGRRLRARGFSDDARALLEHVWALMGMPCGKYLV-VMLELWLPLEAAAGDLDKPFATEA 86
+D R+ +AR +S DA +L++VW++ G CGKYL M++L LEA +
Sbjct 70 IDRRKTKARKYSYDAIKILQYVWSVAGGICGKYLAQAMVDLLNSLEAHNHLVPGQGRYST 129
Query 87 AVA-ELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIE 145
V EL +MS AT+DRYL PAR R ++G S TKP LLRNSI + DE PG E
Sbjct 130 NVRDELVSMSPATIDRYLAPARARDTLRGKSATKPGTLLRNSIQVRKAGDEVEAEPGFFE 189
Query 146 ADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVF 205
DTVAHCGP+L GEF R++ TD+ TGW +++NNAA I+ + P+ +T
Sbjct 190 VDTVAHCGPTLKGEFIRSVNYTDMHTGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGL 249
Query 206 DSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEE 265
D D G EFINHD+ W R I TR RPY KNDQA +ESKNNH+VR++ FY+RYDT E
Sbjct 250 DFDNGSEFINHDLIDWAAQRKIFFTRGRPYTKNDQATIESKNNHLVRRYGFYYRYDTTTE 309
Query 266 LELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQL 325
L L+ LW LV+ R N+FTPTKKP GY++ GRRKR+YD P TP+ RL SG+L+ +Q+
Sbjct 310 LGLMTTLWALVNDRLNYFTPTKKPTGYSTDSVGRRKRVYDTPRTPFVRLLDSGILNRKQV 369
Query 326 STVAARIEGFNPADLTRQINAIQMQLLDLAKTKT 359
+ + A G +P + +I+ IQ +L+ LA KT
Sbjct 370 AELRAYKAGLDPVHIAAEIDRIQQRLIKLAAGKT 403
>gi|315656887|ref|ZP_07909774.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492842|gb|EFU82446.1| integrase domain protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length=310
Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 144/273 (53%), Positives = 183/273 (68%), Gaps = 0/273 (0%)
Query 90 ELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTV 149
EL MSA+T+DRYLK AR+ + ++GIS+TKP LLRNSI I DE PG E TV
Sbjct 14 ELLGMSASTIDRYLKEARQSLELRGISSTKPGALLRNSIKIRKAGDEIADEPGFFEMYTV 73
Query 150 AHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDC 209
AHCGPSL GE RTLT+TD+ TGW +++NNA +L+ + + P+ + D D
Sbjct 74 AHCGPSLKGELVRTLTLTDVNTGWIHLEALQNNARVHMLKALDSAIETIPYQVQGLDCDN 133
Query 210 GGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELL 269
G EFIN +V W + D+ TRSRPY+KNDQAHVESKNNHVVRK+ F++RYDT +EL++L
Sbjct 134 GSEFINREVINWASSLDVFFTRSRPYKKNDQAHVESKNNHVVRKYGFHYRYDTPKELKVL 193
Query 270 NRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVA 329
+LW V LR N FTPT+KP+G+ GRRKR+YD PATP RL ASG+L Q+ +
Sbjct 194 RKLWKTVCLRMNLFTPTRKPIGWNQDSVGRRKRVYDTPATPLDRLLASGILSRTQIKELQ 253
Query 330 ARIEGFNPADLTRQINAIQMQLLDLAKTKTEAL 362
+ NPA+LTR I Q L DLA+T TE L
Sbjct 254 QLRDSTNPAELTRDILRYQAILTDLARTPTEVL 286
>gi|298346652|ref|YP_003719339.1| transposase [Mobiluncus curtisii ATCC 43063]
gi|298236713|gb|ADI67845.1| transposase [Mobiluncus curtisii ATCC 43063]
Length=310
Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 144/276 (53%), Positives = 184/276 (67%), Gaps = 0/276 (0%)
Query 90 ELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTV 149
EL MSA+T+DRYLK AR+ + ++GIS+TKP LLRNSI I DE PG E TV
Sbjct 14 ELLGMSASTIDRYLKEARQSLELRGISSTKPGALLRNSIKIRKAGDEIADEPGFFERYTV 73
Query 150 AHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDC 209
AHCGPSL GE RTLT+TD+ TGW +++NNA +L+ + + P+ + D D
Sbjct 74 AHCGPSLKGELVRTLTLTDVNTGWIHLEALQNNARVHMLKALDSAIETIPYQVQDLDCDN 133
Query 210 GGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELL 269
G EFIN +V W + D+ TRSRPY+KNDQAHVESKNNHVVRK+ F++RYDT +EL++L
Sbjct 134 GSEFINREVINWASSLDVFFTRSRPYKKNDQAHVESKNNHVVRKYGFHYRYDTPKELKVL 193
Query 270 NRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVA 329
+LW V LR N FTPT+KP+G+ GRRKR+YD PATP RL ASG+L Q+ +
Sbjct 194 RKLWKTVCLRMNLFTPTRKPIGWNQDSVGRRKRVYDTPATPLDRLLASGILSRTQIKELQ 253
Query 330 ARIEGFNPADLTRQINAIQMQLLDLAKTKTEALATA 365
+ NPA+LTR I Q L DLA+T TE L +
Sbjct 254 QLRDSTNPAELTRDILRYQAILTDLARTPTEVLTIS 289
>gi|7477503|pir||C70990 hypothetical protein Rv3128c - Mycobacterium tuberculosis (strain
H37RV)
Length=337
Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/320 (49%), Positives = 197/320 (62%), Gaps = 4/320 (1%)
Query 49 VWALMGMPCGKYLVVMLELWLPLEAAAGDLD---KPFATEAAVAELKAMSAATVDRYLKP 105
+W+ G CGKYL + L L G L+ + E EL AMSAA++DRYLK
Sbjct 1 MWSASGGQCGKYLAASMVLQLDGLERHGVLEFGRDRYGPEVR-EELLAMSAASIDRYLKT 59
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
A+ + +I G+STTKPSPLLRNSI + DE PG E DTVAHCGP+L GEFA TL
Sbjct 60 AKAKDQISGVSTTKPSPLLRNSIKVRRAGDEVEAEPGFFEGDTVAHCGPTLKGEFAHTLN 119
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
+TD+ GW ++RNNA IL G+K P +T D D G F+N V W
Sbjct 120 LTDVHIGWVFTRTVRNNARTHILAGLKASVTEIPHGITGLDFDNGTVFLNKPVISWAGDN 179
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
I TR RPY+KN A +ESKNNH+VRK+AFY+RYDT EE +LNR+W LV+ R N+ TP
Sbjct 180 GIYFTRFRPYKKNHXATIESKNNHLVRKYAFYYRYDTAEERAVLNRMWKLVNDRLNYLTP 239
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
T KP+GY S+ +GRR+R+YD P TP R A+ VL A Q + + + NPA + R+I
Sbjct 240 TIKPIGYASSADGRRRRLYDAPQTPLDRPLAARVLSAAQQADLITYRDSLNPAQIGRKIA 299
Query 346 AIQMQLLDLAKTKTEALATA 365
+Q +LL LAK KTE L A
Sbjct 300 DLQNRLLILAKEKTEQLYLA 319
>gi|304389639|ref|ZP_07371601.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327192|gb|EFL94428.1| integrase domain protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length=293
Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/269 (53%), Positives = 181/269 (68%), Gaps = 0/269 (0%)
Query 94 MSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCG 153
MSA+T+DRYLK AR+ + ++GIS+TKP LLRNSI I DE PG E TVAHCG
Sbjct 1 MSASTIDRYLKEARQSLELRGISSTKPGALLRNSIKIRKAGDEIADEPGFFERYTVAHCG 60
Query 154 PSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEF 213
PSL GE RTLT+TD+ TGW +++NNA +L+ + + P+ + D D G EF
Sbjct 61 PSLKGELVRTLTLTDVNTGWIHIEALQNNARVHMLKALDSAIETIPYQVQGLDCDNGSEF 120
Query 214 INHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLW 273
IN +V W + D+ TRSRPY+KNDQAHVESKNNHVVRK+ F++RYDT +EL++L +LW
Sbjct 121 INREVINWASSLDVFFTRSRPYKKNDQAHVESKNNHVVRKYGFHYRYDTPKELKVLRKLW 180
Query 274 PLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIE 333
V LR N FTPT+KP+G+ GRRKR+YD PATP RL ASG+L Q+ + +
Sbjct 181 KTVCLRMNLFTPTRKPIGWNQDSVGRRKRVYDTPATPLDRLLASGILSRTQIKELQQLRD 240
Query 334 GFNPADLTRQINAIQMQLLDLAKTKTEAL 362
NPA+LTR I Q L DLA+T TE L
Sbjct 241 STNPAELTRDILRYQAILTDLARTPTEVL 269
>gi|260904862|ref|ZP_05913184.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=323
Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/252 (48%), Positives = 156/252 (62%), Gaps = 2/252 (0%)
Query 28 VDGRRLRARGFSDDARALLEHVWALMGMPCGKYLV-VMLELWLPLEAAAGDLDKPFATEA 86
+D R+ +AR +S DA +L++VW++ G CGKYL M++L LEA +
Sbjct 70 IDRRKTKARKYSYDAIKILQYVWSVAGGICGKYLAQAMVDLLNSLEAHNHLVPGQGRYST 129
Query 87 AV-AELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIE 145
V EL +MS AT+DRYL PAR R ++G S TKP LLRNSI + DE PG E
Sbjct 130 NVRDELVSMSPATIDRYLAPARARDTLRGKSATKPGTLLRNSIQVRKAGDEVEAEPGFFE 189
Query 146 ADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVF 205
DTVAHCGP+L GEF R++ TD+ TGW +++NNAA I+ + P+ +T
Sbjct 190 VDTVAHCGPTLKGEFIRSVNYTDMHTGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGL 249
Query 206 DSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEE 265
D D G EFINHD+ W R I TR RPY KNDQA +ESKNNH+VR++ FY+RYDT E
Sbjct 250 DFDNGSEFINHDLIDWAAQRKIFFTRGRPYTKNDQATIESKNNHLVRRYGFYYRYDTTTE 309
Query 266 LELLNRLWPLVS 277
L L+ LW LV+
Sbjct 310 LGLMTTLWALVN 321
>gi|89894052|ref|YP_517539.1| hypothetical protein DSY1306 [Desulfitobacterium hafniense Y51]
gi|89333500|dbj|BAE83095.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length=390
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/351 (37%), Positives = 184/351 (53%), Gaps = 4/351 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
V S TG+ R A R+L G P+ + R R + + L+ +W +M CGK
Sbjct 38 VCSATGLSRDRAARVLRGEKRPKTKHSSRKKSGRPRVYDFEVCQALKTIWTIMDFACGKR 97
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L +E L G+L +E + +L+ MSA+++DR LK + +R+KG+STTKP
Sbjct 98 LAEAMEDILDALLRFGELR---CSEDTLRKLRRMSASSIDRLLKKDKASLRLKGLSTTKP 154
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
LL+ I I VPG +E D VAHCG S GE+ TL +TD+ TGWTE ++
Sbjct 155 GTLLKRDIPIRLGQQWDDAVPGYVEVDLVAHCGASTAGEYVNTLNVTDICTGWTEPVAVL 214
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
N A K + G+ Q R PFP DSD G EFINH++ + I TRSRPY KND
Sbjct 215 NKAQKHVFAGLMAVQDRQPFPYLGIDSDNGSEFINHELKRYCDQEGICFTRSRPYTKNDG 274
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
HVE KN +VR+H Y RY+ L LLN+ + L+ NFF P+ K + + +
Sbjct 275 CHVEQKNWSLVRRHIGYGRYEGQAALALLNQYYGLLRRYVNFFQPSTKLIE-KQRIGAKV 333
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQL 351
+ Y+KP TP++R+ A + + + NPA L R + ++ +L
Sbjct 334 LKRYEKPQTPYKRVLADNHIPDTVKDNLTHAFQQINPAQLMRDMQRVKTEL 384
>gi|296169348|ref|ZP_06850973.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895970|gb|EFG75660.1| integrase domain protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=210
Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 112/201 (56%), Positives = 137/201 (69%), Gaps = 0/201 (0%)
Query 89 AELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADT 148
AEL AMS+AT+DRYL+ + R +IKG STTK SPLLR+SI I +DE PG E DT
Sbjct 10 AELLAMSSATIDRYLRAVKARDQIKGKSTTKASPLLRSSIKIRKATDEVEGSPGFFEGDT 69
Query 149 VAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSD 208
VAHCGP+L GEFART+ +TD+ GW + RNNA IL +K P+ +T D D
Sbjct 70 VAHCGPTLKGEFARTVNLTDMHIGWVFTRTERNNAHTHILGALKAGVHEIPYEVTGLDFD 129
Query 209 CGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELEL 268
G EF+N V W +I TRSRPY+KNDQA +ESKNNH+VRK+ FY+RYDT EE +
Sbjct 130 NGTEFLNKAVIKWAAQMEIFFTRSRPYKKNDQATIESKNNHLVRKYGFYYRYDTDEERAV 189
Query 269 LNRLWPLVSLRCNFFTPTKKP 289
LNRLW LV+ R N+ TPT KP
Sbjct 190 LNRLWRLVNDRLNYLTPTIKP 210
>gi|120403405|ref|YP_953234.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1]
gi|119956223|gb|ABM13228.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1]
Length=410
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/361 (40%), Positives = 186/361 (52%), Gaps = 7/361 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ + TG RS AR+ LT P V R R + + A L W ++GMP GK
Sbjct 34 LCANTGWHRSHARKALTAALAPT---LVAVRAPRPVTYGPEVIAALTVCWTVLGMPAGKR 90
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML L A + ++ A L +MSAAT+DR L R R +I+G TKP
Sbjct 91 LAPMLT---ELVAVLRHFRELVISDETAALLVSMSAATIDRRLADERARCKIRGRVGTKP 147
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
LL++ I + T ++ VPG +E DTV H G S G A TLT+TD+ TGWTEN S+
Sbjct 148 GSLLKSQIPVRTWAEWDDAVPGFVEIDTVFHDGGSRGGGHAFTLTVTDIATGWTENRSLP 207
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
+ AK +L + PFP+ DSD G EFIN D+ W Q R I TRSRP KND
Sbjct 208 DRTAKHVLAALNHIAAAMPFPILGVDSDNGSEFINDDLLRWCQKRRITFTRSRPGNKNDG 267
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
HVE KN VVR Y+RYDT EL LLN +W L S+ N+F P +K + T +
Sbjct 268 CHVEQKNWAVVRTVVSYYRYDTAPELLLLNEIWKLQSMLTNYFHPQQKLISKVRT-GAKV 326
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
R +DK TP+ R + ++ + NPA RQI A+ QL LA +K +
Sbjct 327 SRKHDKATTPFHRAIDHPSMTVDRIVALKRTYSLINPAATQRQIQALTTQLFTLATSKAQ 386
Query 361 A 361
A
Sbjct 387 A 387
>gi|325963578|ref|YP_004241484.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323469665|gb|ADX73350.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
Length=318
Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/287 (43%), Positives = 163/287 (57%), Gaps = 2/287 (0%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+V+ TG R +RR + + A RR R R FS DA +L+HVW L+G P GKY
Sbjct 32 LVAATGWTRDHSRRAIRVALQRKGAAHEQQRRHRPRKFSYDALVVLQHVWRLVGQPSGKY 91
Query 61 LVVMLELWLPLEAAAGDLDK--PFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTT 118
L +++ L +L K T + EL+ MSAAT+DRYLKP ++ +S T
Sbjct 92 LAAVMDDLLERLVRFRELGKVADRVTPLVLDELRQMSAATIDRYLKPHKDAAYPVALSGT 151
Query 119 KPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENAS 178
KPS +LR+SI + T D+ PG +E DTVAHCG ++ GEF TL TD V GWT +
Sbjct 152 KPSHILRSSIPLRTAMDDPITNPGFLELDTVAHCGHTMKGEFLWTLNATDPVIGWTMMRT 211
Query 179 IRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKN 238
++N A + G++ + P P+ D D GGEF+N V W R I TR+RPY+ N
Sbjct 212 VKNKAFTHVHTGLEWINKHAPIPIAGMDFDNGGEFLNWSVIAWADKRKIPLTRTRPYKHN 271
Query 239 DQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
D AH+E +N VRKHAF +RY++ EL LLN LW LV R N P
Sbjct 272 DNAHIEQRNGDWVRKHAFRYRYESAAELTLLNELWDLVMARKNHLLP 318
>gi|332296340|ref|YP_004438263.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
gi|332179443|gb|AEE15132.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
Length=417
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/384 (36%), Positives = 202/384 (53%), Gaps = 28/384 (7%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRA-----------RGFSDDARALLEHV 49
+++ TG RS A +L+ E +++ R L+ + + DD + L V
Sbjct 34 LIALTGYNRSYASFLLSSH---EKIVRMNNRVLKVDLTMKKKKKKSKYYDDDVKKALIKV 90
Query 50 WALMGMPCGKYLV-VMLELWLPLEAAAGDLDKPFATEAAVAE-LKAMSAATVDRYLKPAR 107
W ++ PCGK L V+ E+ L+ K E V E L +SA+T+DR L +
Sbjct 91 WDVLDCPCGKRLKPVLPEIIYKLKEF-----KEIQIERDVEEKLFKISASTIDRILSEYK 145
Query 108 ERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMT 167
+ KG + TKP LL++ I I T S+ +PG +E D V H G L GEF +TLT
Sbjct 146 RMNKPKGKTYTKPGSLLKSQIPIRTFSEWDESIPGYLEIDLVGHEGGDLRGEFIQTLTAV 205
Query 168 DLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDI 227
D+ TGW E ++RN A +W+ E I E ++R PF + DSD G EFINH + + +I
Sbjct 206 DICTGWIEIDALRNKAQRWVFESIDEIKKRLPFKLFGIDSDNGAEFINHQLHRYCVENNI 265
Query 228 AQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTK 287
TRSR Y+KND +VE KN VVRK+ Y+RYD EL L RL+ + L NFF P
Sbjct 266 TFTRSRKYRKNDNCYVEQKNYSVVRKYVGYFRYDREVELITLKRLYESLRLYINFFQPVM 325
Query 288 KPVGYTSTVNGRRKRIYDKPATPWQR-LQASGV--LDAQQLSTVAARIEGFNPADLTRQI 344
K + + + + YDK TP+QR L+ GV +D ++L ++ NPA+L R+I
Sbjct 326 KQIS-KERIGSKVTKKYDKARTPYQRILENPGVEKIDKEKLIEQYTKL---NPAELQREI 381
Query 345 NAIQMQLLDLAKTKTEALATARHI 368
+Q +LL+ K E + + I
Sbjct 382 VKLQKKLLEDISIKEEVRNSIKKI 405
>gi|332295603|ref|YP_004437526.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
gi|332178706|gb|AEE14395.1| Integrase catalytic region [Thermodesulfobium narugense DSM 14796]
Length=417
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/384 (36%), Positives = 202/384 (53%), Gaps = 28/384 (7%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRA-----------RGFSDDARALLEHV 49
+++ TG RS A +L+ E +++ R L+ + + DD + L V
Sbjct 34 LIALTGYNRSYASFLLSSH---EKIVRMNNRVLKVDLTMKKKKKKSKYYDDDVKKALIKV 90
Query 50 WALMGMPCGKYLV-VMLELWLPLEAAAGDLDKPFATEAAVAE-LKAMSAATVDRYLKPAR 107
W ++ PCGK L V+ E+ L+ K E V E L +SA+T+DR L +
Sbjct 91 WDVLDCPCGKRLKPVLPEIIYKLKEF-----KEIQIERDVEEKLFKISASTIDRILSEYK 145
Query 108 ERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMT 167
+ KG + TKP LL++ I I T S+ +PG +E D V H G L GEF +TLT
Sbjct 146 RMNKPKGKTYTKPGSLLKSQIPIRTFSEWDESIPGYLEIDLVGHEGGDLRGEFIQTLTAV 205
Query 168 DLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDI 227
D+ TGW E ++RN A +W+ E I E ++R PF + DSD G EFINH + + +I
Sbjct 206 DICTGWIEIDALRNKAQRWVFESIDEIKKRLPFKLFGIDSDNGAEFINHQLHRYCVENNI 265
Query 228 AQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTK 287
TRSR Y+KND +VE KN VVRK+ Y+RYD EL L RL+ + L NFF P
Sbjct 266 TFTRSRKYRKNDNCYVEQKNYSVVRKYVGYFRYDREVELITLKRLYESLRLYINFFQPIM 325
Query 288 KPVGYTSTVNGRRKRIYDKPATPWQR-LQASGV--LDAQQLSTVAARIEGFNPADLTRQI 344
K + + + + YDK TP+QR L+ GV +D ++L ++ NPA+L R+I
Sbjct 326 KQIS-KERIGSKVTKKYDKARTPYQRILENPGVEKIDKEKLIEQYTKL---NPAELQREI 381
Query 345 NAIQMQLLDLAKTKTEALATARHI 368
+Q +LL+ K E + + I
Sbjct 382 VKLQKKLLEDISIKEEVRNSIKKI 405
>gi|339627742|ref|YP_004719385.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
gi|339285531|gb|AEJ39642.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
Length=416
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/321 (39%), Positives = 177/321 (56%), Gaps = 11/321 (3%)
Query 38 FSDDARALLEHVWALMGMPCGKYLVVML-ELWLPLEAAAGDLDKPFATEAAVAELKAMSA 96
+ A+A L WA++ P GK L L EL LEA +P + +L MSA
Sbjct 90 YGAAAKAALTTCWAILNFPTGKRLQPFLPELVERLEAHGERHLEPTVRD----QLVQMSA 145
Query 97 ATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCS--DEAPKVPGVIEADTVAHCGP 154
A++DR+L R R+ +KG S TKP PLL+ I + T + D+A PG +E D V+H G
Sbjct 146 ASIDRFLAAERRRLEVKGRSGTKPGPLLKQQIPVRTWAEWDDATH-PGFLEIDLVSHDGG 204
Query 155 SLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFI 214
+ GEFA TL + D++TGWTE ++ N A KW++E + RFPFP+ DSD G EFI
Sbjct 205 AARGEFAWTLDLVDILTGWTETVALPNKARKWVIEALDTQLSRFPFPIRGIDSDNGSEFI 264
Query 215 NHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWP 274
NH + W + I TR+R Y KND +VE KN VVR+ Y RY+ E+++ LN L+
Sbjct 265 NHHLLTWCDSHPIMFTRARAYHKNDGCYVEQKNWSVVRRFVGYLRYEGAEQVQWLNDLYA 324
Query 275 LVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQA--SGVLDAQQLSTVAARI 332
+ L +FF P +K V R R YD+ TP+QR+ A ++ Q + + A+
Sbjct 325 TLRLYTHFFQPLQKTVA-KERRGARTYRRYDQAQTPYQRVLALPDTLVSPAQKAVLTAQY 383
Query 333 EGFNPADLTRQINAIQMQLLD 353
NPA + R + +Q +L D
Sbjct 384 TSLNPAAIRRDLLRLQNRLWD 404
>gi|333990799|ref|YP_004523413.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
gi|333486767|gb|AEF36159.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 132/366 (37%), Positives = 181/366 (50%), Gaps = 7/366 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ +TTG R+ AR+ L P+ V R R + DD A L W ++GMP GK
Sbjct 34 LCATTGWHRNHARKALKSALQPKI---VTARSPRPVKYGDDVIAALVLCWTVLGMPAGKR 90
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML L + E L +MSAAT+DR L P R + R++G + TKP
Sbjct 91 LAPMLG---ELVGVLRHFRELTIDEGTAELLVSMSAATIDRCLAPERAKRRLRGRAGTKP 147
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
LL++ I + T ++ PG +E D V H G G A TLT+TD+ TGWTEN S+
Sbjct 148 GSLLKSQIPVRTWAEWGDARPGFVEIDLVWHDGGIRGGGHAFTLTVTDIATGWTENRSVP 207
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
+K +L + + + PFP+ DSD G EFIN D+ W Q I TR+RP KND
Sbjct 208 ERTSKCVLAALNDIARAMPFPVLGVDSDNGSEFINDDLFRWCQRHKITFTRARPGNKNDG 267
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
HVE KN VVR Y RYDT E+ LLN +W L S N+F P +K + +
Sbjct 268 CHVEQKNWSVVRSMVGYHRYDTAAEVLLLNEIWHLQSKLTNYFYPQQKLISKVRK-GAKI 326
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
+ +DK TP+ R+ +++ + NPA RQ A+ +L L TK
Sbjct 327 SKKHDKATTPFHRVIDHPTATVERIVALTRAYSLINPAATQRQAQALTTRLFSLTTTKAG 386
Query 361 ALATAR 366
A A+
Sbjct 387 PAAEAQ 392
>gi|254820517|ref|ZP_05225518.1| integrase catalytic subunit [Mycobacterium intracellulare ATCC
13950]
Length=417
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 131/365 (36%), Positives = 182/365 (50%), Gaps = 7/365 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ + TG R+ AR+ L +P V R R + DD A L W ++ P GK
Sbjct 41 LCANTGWHRNHARKALKAALVPT---VVTSRNPRPVKYGDDVIAALIRCWVVLERPAGKR 97
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML + + G+L +A L +MSAAT+DR L R + ++G TKP
Sbjct 98 LAPMLTELVAVLRYFGEL---IIDDATAELLVSMSAATIDRRLADQRAKYSLRGHVGTKP 154
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
LL++ I + T ++ PG +E D V H G + G A TLT+TD+ TGWTEN S+
Sbjct 155 GSLLKSQIPVRTWAEWDDARPGFVEIDLVWHDGGNRGGGHAFTLTVTDIATGWTENRSVP 214
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
+ AK +L + + + PFP+ DSD G EFIN + GW Q R I TR+RP KND
Sbjct 215 DKTAKCVLAALNDIAGKMPFPILGVDSDNGSEFINDHLLGWCQGRQITFTRARPGNKNDG 274
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
HVE KN VVR Y RYDT EL LLN +W L S N+F P +K + +
Sbjct 275 CHVEQKNWAVVRTVVGYHRYDTAAELLLLNEIWQLQSKLTNYFYPQQKLISKVRK-GAKV 333
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
+ +D TP+ R + +++ + NPA RQ+ A+ QL L +K
Sbjct 334 SKKHDTATTPFHRAIDHPAITVERIVALTRTYSLINPAATQRQVQALTAQLHTLTTSKAA 393
Query 361 ALATA 365
ATA
Sbjct 394 PGATA 398
>gi|333991761|ref|YP_004524375.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
gi|333487729|gb|AEF37121.1| integrase catalytic subunit [Mycobacterium sp. JDM601]
Length=410
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 132/366 (37%), Positives = 183/366 (50%), Gaps = 7/366 (1%)
Query 1 VVSTTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKY 60
+ +TTG R+ AR+ L P+ V R R + DD A L W ++GMP GK
Sbjct 34 LCATTGWHRNHARKALKSALQPK---IVTARSPRPVKYGDDVIAALVLCWTVLGMPAGKR 90
Query 61 LVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKP 120
L ML + + +L E L +MSAAT+DR L P R + R++G + TKP
Sbjct 91 LAPMLGELVGILRHFRELT---IDEGTAELLVSMSAATIDRRLAPERAKHRLRGRAGTKP 147
Query 121 SPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIR 180
LL++ I + T ++ PG +E D V H G G A TLT+TD+ TGWTEN S+
Sbjct 148 GSLLKSQIPVRTWAEWDDARPGFVEIDLVWHDGGIRGGGHAFTLTVTDIATGWTENRSVP 207
Query 181 NNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQ 240
+K +L + + + PFP+ DSD G EFIN D+ W Q I TR+RP KND
Sbjct 208 ERTSKCVLAALNDIARAMPFPVLGVDSDNGSEFINDDLFRWCQRHKITFTRARPGNKNDG 267
Query 241 AHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRR 300
HVE KN VVR Y RYDT E+ LLN +W L S N+F P +K + +
Sbjct 268 CHVEQKNWSVVRSMVGYHRYDTAAEVLLLNEIWHLQSKLTNYFYPQQKLISKVRK-GAKI 326
Query 301 KRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTE 360
+ +DK TP+ R+ +++ + NPA RQ A+ +L L TK
Sbjct 327 SKKHDKATTPFHRVIDHPTATVERIVALTRAYSLINPAATQRQAQALTTRLFSLTTTKAG 386
Query 361 ALATAR 366
A A+
Sbjct 387 PAAEAQ 392
>gi|339626993|ref|YP_004718636.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
gi|339284782|gb|AEJ38893.1| integrase catalytic subunit [Sulfobacillus acidophilus TPY]
Length=389
Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/308 (39%), Positives = 171/308 (56%), Gaps = 9/308 (2%)
Query 50 WALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVA-ELKAMSAATVDRYLKPARE 108
WA++ P GK L L + A G+L E AV +L MSAA++DR+L R
Sbjct 75 WAILNFPTGKRLHPFLPELVERLEAHGELH----LEPAVRDQLVQMSAASIDRFLAAERR 130
Query 109 RMRIKGISTTKPSPLLRNSITIHTCSD-EAPKVPGVIEADTVAHCGPSLIGEFARTLTMT 167
R+ +KG S TKP LL+ I + T ++ + PG +E D V+H G + GEFA TL +
Sbjct 131 RLEVKGRSGTKPGTLLKQQIPVRTWAEWDDATHPGFLEIDLVSHDGGAARGEFAWTLDLV 190
Query 168 DLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDI 227
D++TGWTE ++ N A KW++E + RFPFP+ DSD G EFINH + W ++ I
Sbjct 191 DILTGWTETVALPNKARKWVIEALDAQLSRFPFPIRGIDSDNGSEFINHHLLTWCESHHI 250
Query 228 AQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTK 287
TRSR Y KND +VE KN VVR+ Y RY+ E+++ LN L+ + L NFF P +
Sbjct 251 TFTRSRAYHKNDGCYVEQKNWSVVRRFVGYLRYEGAEQVQWLNDLYATLRLYTNFFQPLQ 310
Query 288 KPVGYTSTVNGRRKRIYDKPATPWQRLQA--SGVLDAQQLSTVAARIEGFNPADLTRQIN 345
K V R R YD+ P+QR+ A ++ + Q + + A+ NPA + R +
Sbjct 311 KAVA-KERRGARTYRRYDQAQPPYQRVMALPDTLVSSTQKAALKAQYASLNPAAIRRDLL 369
Query 346 AIQMQLLD 353
+Q +L D
Sbjct 370 RLQNRLWD 377
>gi|239616742|ref|YP_002940064.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239505573|gb|ACR79060.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/358 (33%), Positives = 179/358 (50%), Gaps = 4/358 (1%)
Query 4 TTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVV 63
T RS A +L G A ++ R + + L +W +M PCGK L
Sbjct 30 VTKYNRSYASFLLRGALKKRKATSPSQKKGRKKKYDHKVFVKLVKIWEIMDFPCGKRLEA 89
Query 64 MLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPL 123
+++ + G L E +L ++SA+T+DR L R++M +KG S TKP L
Sbjct 90 VMDEVIDNLVRNGHLT---LAEETKRKLLSISASTIDRLLSSERKKMELKGRSHTKPGTL 146
Query 124 LRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNA 183
L+ I I T + PG +E D V H G S+ G+F +L M D+ +GW+ A IRN A
Sbjct 147 LKKHIRIKTHYEWDDTRPGFVEIDLVGHDGGSVSGDFCYSLNMVDVASGWSVVAPIRNKA 206
Query 184 AKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHV 243
W L+ I + ++ PF + SD G EFIN + + + + TR+R Y KND HV
Sbjct 207 QIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHIYRYCEDEGLLFTRTRSYNKNDNCHV 266
Query 244 ESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRI 303
E KN VVR+ Y+RYDT EE ++L L+ ++L N F P +K + N K+
Sbjct 267 EQKNWSVVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKIIEKIRKGNKVSKK- 325
Query 304 YDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA 361
YD+P TP++R+ S +D + + + E + L I +Q QLL + K++
Sbjct 326 YDRPTTPYERIMRSPWVDQDKKDRLRRQHEALDIYKLKSIITHLQEQLLSIQIDKSKG 383
>gi|296108471|ref|YP_003620172.1| hypothetical protein lpa_04105 [Legionella pneumophila 2300/99
Alcoy]
gi|295650373|gb|ADG26220.1| hypothetical protein lpa_04105 [Legionella pneumophila 2300/99
Alcoy]
Length=393
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/299 (41%), Positives = 168/299 (57%), Gaps = 12/299 (4%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +WLP + + + A+L AMSAAT+DR LKP
Sbjct 75 LKKIWLATDQMCGKRLKEALPIWLPHYHKHHEA----SLDELSAQLLAMSAATIDRLLKP 130
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
+ R KG S TKP LLR I I+T + +V G +EADTVAHCG SL+G+F ++T
Sbjct 131 IKSRYG-KGFSGTKPGSLLRKHIPINTSQWDTRQV-GFMEADTVAHCGNSLMGDFVWSIT 188
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
MTD+ +GWTE + N A +++GI+ ++ PF + FD D G EF+N + + R
Sbjct 189 MTDIFSGWTEMRATWNKGATGVMQGIENIEENLPFEIKGFDCDNGSEFLNWHLIRYFTDR 248
Query 226 ----DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWP-LVSLRC 280
+ TRSRPY+K+D AHVE KN VR+ Y R+D + +EL+N L+ VSL
Sbjct 249 GSQKSVQFTRSRPYKKDDNAHVEQKNWTHVRQLFGYHRFDNPKIVELMNDLYSNEVSLLF 308
Query 281 NFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPAD 339
NFF P K + + +K+ YDKP TP+QRL AS L Q T+ + +P +
Sbjct 309 NFFYPCIKLIDKVRIQSSIKKK-YDKPQTPYQRLMASSCLTLDQKKTLQEQFIALDPFN 366
>gi|239616771|ref|YP_002940093.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239505602|gb|ACR79089.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/358 (34%), Positives = 179/358 (50%), Gaps = 4/358 (1%)
Query 4 TTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVV 63
T RS A +L G A ++ R + + L +W +M PCGK L
Sbjct 30 VTKYNRSYASFLLRGALKKRKATSPSQKKGRKKKYDHKVFVKLVKIWEIMDFPCGKRLEA 89
Query 64 MLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPL 123
+++ + G L E +L ++SA+T+DR L R++M +KG S TKP L
Sbjct 90 VMDEVIDNLVRNGHLT---LAEETKRKLLSISASTIDRLLSSERKKMELKGRSHTKPGTL 146
Query 124 LRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNA 183
L+ I I T + PG +E D V H G S+ G+F +L M D+ +GW+ A IRN A
Sbjct 147 LKKHIRIKTHYEWDDTRPGFVEIDLVGHDGGSVSGDFCYSLNMVDVASGWSVVAPIRNKA 206
Query 184 AKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHV 243
W L+ I + ++ PF + SD G EFIN + + + + TR+R Y KND HV
Sbjct 207 QIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHLYRYCEDEGLLFTRTRSYNKNDNCHV 266
Query 244 ESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRI 303
E KN VVR+ Y+RYDT EE ++L L+ ++L N F P +K V N K+
Sbjct 267 EQKNWSVVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKIVEKIRKGNKVSKK- 325
Query 304 YDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA 361
YD+P TP++R+ S +D + + + E + L I +Q QLL + K++
Sbjct 326 YDRPTTPYERIMRSPWVDQDKKDRLRRQHEALDIYKLKSIITHLQEQLLSIQIDKSKG 383
>gi|239617798|ref|YP_002941120.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239506629|gb|ACR80116.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/358 (33%), Positives = 177/358 (50%), Gaps = 4/358 (1%)
Query 4 TTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVV 63
T RS A +L G ++ R + + L +W +M PCGK L
Sbjct 30 VTKYNRSYASFLLRGASKKRKTTSPSQKKGRKKKYDHKVFVKLVKIWEIMDFPCGKRLEA 89
Query 64 MLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPL 123
+++ + G L TE +L +SA+T+DR L R++M +KG S TKP L
Sbjct 90 VMDEVIDNLVRNGHLT---LTEETKRKLLNISASTIDRLLSSERKKMELKGRSHTKPGTL 146
Query 124 LRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNA 183
L+ I I T + PG +E D V H G S+ G+F +L M D+ +GW+ A IRN A
Sbjct 147 LKKHIRIKTHYEWDDTRPGFVEIDLVGHDGGSVSGDFCYSLNMVDVASGWSVVAPIRNKA 206
Query 184 AKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHV 243
W L+ I + ++ PF + SD G EFIN + + + + TR+R Y KND HV
Sbjct 207 QIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHIYRYCEDEGLLFTRTRSYNKNDNCHV 266
Query 244 ESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRI 303
E KN VVR+ Y+RYDT EE ++L L+ ++L N F P +K + N K+
Sbjct 267 EQKNWSVVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKIIEKIRKGNKVSKK- 325
Query 304 YDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA 361
YD+P TP++R+ S +D + + E + L I Q QL+++ K++
Sbjct 326 YDRPTTPYERIMQSPWVDQNTKDRLRKQHEALDIYKLKSIITHFQEQLVNIQIDKSKG 383
>gi|333993254|ref|YP_004525867.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333993302|ref|YP_004525915.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333993447|ref|YP_004526060.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
7 more sequence titles
Length=411
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/316 (36%), Positives = 162/316 (52%), Gaps = 4/316 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +P + T+ A+L A+S AT+DR LKP
Sbjct 93 LKLIWEFFDYMCGKRLSPFLREQMPFLNPCKEFG---ITKEVKAQLLAISPATIDRKLKP 149
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R+++ +KG S T+P LL++ I I + PG E DTV H G + GEF TL
Sbjct 150 ERKKLELKGRSATRPGGLLKHQIPIRVFYAWDERKPGFFELDTVVHDGGNASGEFCCTLN 209
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
TD+ +GW E ++ N A +W+ E + +FPFP+ DSD GGEFIN+ + W
Sbjct 210 ATDVYSGWVELRALLNKAHRWVKEEVSLFPSQFPFPLLGIDSDNGGEFINYQLKAWCDEH 269
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TRSR Y KND VE KN+ VR+ Y+RYDT + + L ++ + N+F P
Sbjct 270 RVQFTRSRSYHKNDNCFVEQKNDMTVRRTVGYYRYDTLQARDALAEVYRHLCPLLNYFYP 329
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
++K + + R K++YDKP +P++RL S L + R NP R +N
Sbjct 330 SEKIIA-KERIGARVKKVYDKPKSPYRRLLESPDLPDTFKDELRRRAARLNPVKQKRLVN 388
Query 346 AIQMQLLDLAKTKTEA 361
M L +L K+ A
Sbjct 389 HALMALFELQSQKSLA 404
>gi|333993354|ref|YP_004525967.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333996433|ref|YP_004529046.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333734264|gb|AEF80213.1| integrase domain protein [Treponema azotonutricium ZAS-9]
gi|333737402|gb|AEF83351.1| integrase domain protein [Treponema azotonutricium ZAS-9]
Length=411
Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/323 (35%), Positives = 165/323 (52%), Gaps = 4/323 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +P + T+ A+L A+S AT+DR LKP
Sbjct 93 LKLIWEFFDYMCGKRLSPFLREQMPFLNPCKEFG---ITKEVKAQLLAISPATIDRKLKP 149
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R+++ +KG S T+P LL++ I I + PG E DTV H G + GEF TL
Sbjct 150 ERKKLELKGRSATRPGGLLKHQIPIRVFYAWDERKPGFFELDTVVHDGGNASGEFCCTLN 209
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
TD+ +GW E ++ N A +W+ E + +FPFP+ DSD GGEFIN+ + W
Sbjct 210 ATDVYSGWVELRALLNKAHRWVKEEVSLFPSQFPFPLLGIDSDNGGEFINYQLKAWCDEH 269
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TRSR Y KND VE KN+ VR+ Y+RYDT + + L ++ + N+F P
Sbjct 270 RVQFTRSRSYHKNDNCFVEQKNDMTVRRTVGYYRYDTLQARDALAEVYRHLCPLLNYFYP 329
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
++K + + R K++YDKP +P++RL S L + + R NP R +N
Sbjct 330 SEKIIA-KERIGARVKKVYDKPKSPYRRLLESPDLPDIFKNELRRRAARLNPVKQKRLVN 388
Query 346 AIQMQLLDLAKTKTEALATARHI 368
M L +L K+ A + I
Sbjct 389 HALMALFELQSQKSLAASALEDI 411
>gi|333994907|ref|YP_004527520.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333734669|gb|AEF80618.1| integrase domain protein [Treponema azotonutricium ZAS-9]
Length=411
Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/316 (36%), Positives = 162/316 (52%), Gaps = 4/316 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +P + T+ A+L A+S AT+DR LKP
Sbjct 93 LKLIWEFFDYMCGKRLSPFLREQMPFLNPCKEFG---ITKEVKAQLLAISPATIDRKLKP 149
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R+++ +KG S T+P LL++ I I + PG E DTV H G + GEF TL
Sbjct 150 ERKKLELKGRSATRPGGLLKHQIPIRVFYAWDERKPGFFELDTVVHDGGNASGEFCCTLN 209
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
TD+ +GW E ++ N A +W+ E + +FPFP+ DSD GGEFIN+ + W
Sbjct 210 ATDVYSGWVELRALLNKAHRWVKEEVSLFPSQFPFPLLGIDSDNGGEFINYQLKAWCDEH 269
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TRSR Y KND VE KN+ VR+ Y+RYDT + + L ++ + N+F P
Sbjct 270 RVQFTRSRSYHKNDNCFVEQKNDMTVRRTVGYYRYDTLQARDALAEVYRHLCPLLNYFYP 329
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
++K + + R K++YDKP +P++RL S L + R NP R +N
Sbjct 330 SEKIIA-KERIGARVKKVYDKPKSPYRRLLESPDLPDTFKDELRRRAARLNPVKQKRLVN 388
Query 346 AIQMQLLDLAKTKTEA 361
M L +L K+ A
Sbjct 389 HALMALFELQSQKSLA 404
>gi|239618188|ref|YP_002941510.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239507019|gb|ACR80506.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/358 (33%), Positives = 176/358 (50%), Gaps = 4/358 (1%)
Query 4 TTGMGRSTARRMLTGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCGKYLVV 63
T RS A +L G ++ R + + L +W +M PCGK L
Sbjct 30 VTKYNRSYASFLLRGASKKRKTTSPSQKKGRKKKYDHKVFVKLVRIWEIMDFPCGKRLEA 89
Query 64 MLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTTKPSPL 123
++ + G L TE +L +SA+T+DR L R++M +KG S TKP L
Sbjct 90 VMGEVIDNLVRNGHLT---LTEETKRKLLNISASTIDRLLSSERKKMELKGRSHTKPGTL 146
Query 124 LRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNA 183
L+ I I T + PG +E D + H G S+ G+F +L M D+ +GW+ A IRN A
Sbjct 147 LKKHIRIKTHYEWDDTRPGFVEVDLIGHDGGSVSGDFCYSLNMVDVASGWSVVAPIRNKA 206
Query 184 AKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHV 243
W L+ I + ++ PF + SD G EFIN + + + + TR+R Y KND HV
Sbjct 207 QIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHIYRYCEDEGLLFTRTRSYNKNDNCHV 266
Query 244 ESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRI 303
E KN VVR+ Y+RYDT EE ++L L+ ++L N F P +K + N K+
Sbjct 267 EQKNWSVVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQPNQKIIEKIRKGNKVSKK- 325
Query 304 YDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQLLDLAKTKTEA 361
YD+P TP++R+ S +D + + E + L I Q QL+++ K++
Sbjct 326 YDRPTTPYERIMQSPWVDQNTKDRLRKQHEALDIYKLKSIITHFQEQLVNIQIDKSKG 383
>gi|153803772|ref|ZP_01958358.1| integrase domain protein [Vibrio cholerae MZO-3]
gi|124120692|gb|EAY39435.1| integrase domain protein [Vibrio cholerae MZO-3]
Length=362
Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/316 (36%), Positives = 162/316 (52%), Gaps = 4/316 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +P + T+ A+L A+S AT+DR LKP
Sbjct 44 LKLIWEFFDYMCGKRLSPFLREQMPFLNPCKEFG---ITKEVKAQLLAISPATIDRKLKP 100
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R+++ +KG S T+P LL++ I I + PG E DTV H G + GEF TL
Sbjct 101 ERKKLELKGRSATRPGGLLKHQIPIRVFYAWDERKPGFFELDTVVHDGGNASGEFCCTLN 160
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
TD+ +GW E ++ N A +W+ E + +FPFP+ DSD GGEFIN+ + W
Sbjct 161 ATDVYSGWVELRALLNKAHRWVKEEVSLFPSQFPFPLLGIDSDNGGEFINYQLKAWCDEH 220
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TRSR Y KND VE KN+ VR+ Y+RYDT + + L ++ + N+F P
Sbjct 221 RVQFTRSRSYHKNDNCFVEQKNDMTVRRTVGYYRYDTLQARDALAEVYRHLCPLLNYFYP 280
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
++K + + R K++YDKP +P++RL S L + R NP R +N
Sbjct 281 SEKIIA-KERIGARVKKVYDKPKSPYRRLLESPDLPDTFKDELRRRAARLNPVKQKRLVN 339
Query 346 AIQMQLLDLAKTKTEA 361
M L +L K+ A
Sbjct 340 HALMALFELQSQKSLA 355
>gi|333995913|ref|YP_004528526.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333735766|gb|AEF81715.1| integrase domain protein [Treponema azotonutricium ZAS-9]
Length=411
Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/316 (36%), Positives = 163/316 (52%), Gaps = 4/316 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +P + T+ A+L A+S AT+DR LKP
Sbjct 93 LKLIWEFFDYMCGKRLSPFLREQMPFLNPCKEFG---ITKEVKAQLLAISPATIDRKLKP 149
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R+++ +KG S T+P LL++ I I + PG E DTV H G + GEF TL
Sbjct 150 ERKKLELKGRSATRPGGLLKHQIPIRVFYAWDERKPGFFELDTVVHDGGNASGEFCCTLN 209
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
TD+ +GW E ++ N A +W+ E + +FPFP+ DSD GGEFIN+ + W
Sbjct 210 ATDVYSGWVELRALLNKAHRWVKEEVSLFPSQFPFPLLGIDSDNGGEFINYQLKAWCDEH 269
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TRSR Y KND VE KN+ VR+ Y+RYDT + + L ++ + N+F P
Sbjct 270 RVQFTRSRSYHKNDNCFVEQKNDMTVRRTVGYYRYDTLQARDALAEVYRHLCPLLNYFYP 329
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
++K + + R K++YDKP +P++RL S L + + R NP R +N
Sbjct 330 SEKIIA-KERIGARVKKVYDKPKSPYRRLLESPDLPDIFKNELRRRAARLNPVKQKRLVN 388
Query 346 AIQMQLLDLAKTKTEA 361
M L +L K+ A
Sbjct 389 HALMALFELQSQKSLA 404
>gi|333994180|ref|YP_004526793.1| integrase domain-containing protein [Treponema azotonutricium
ZAS-9]
gi|333736809|gb|AEF82758.1| integrase domain protein [Treponema azotonutricium ZAS-9]
Length=411
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/323 (35%), Positives = 165/323 (52%), Gaps = 4/323 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L+ +W CGK L L +P + T+ A+L A+S AT+DR LKP
Sbjct 93 LKLIWEFFDYMCGKRLSPFLREQMPFLNPCKEFG---ITKEVKAQLLAISPATIDRKLKP 149
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R+++ +KG S T+P LL++ I I + PG E DTV H G + GEF TL
Sbjct 150 ERKKLELKGRSATRPGGLLKHQIPIRVFYAWDERKPGFFELDTVVHDGGNASGEFCCTLN 209
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
TD+ +GW E ++ N A +W+ E + +FPFP+ DSD GGEFIN+ + W
Sbjct 210 ATDVYSGWVELRALLNKAHRWVKEEVSLFPSQFPFPLLGIDSDNGGEFINYQLKAWCDEH 269
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TRSR Y KND VE KN+ VR+ Y+RYDT + + L ++ + N+F P
Sbjct 270 RVQFTRSRSYHKNDNCFVEQKNDMTVRRTVGYYRYDTLQARDALAEVYRHLCPLLNYFYP 329
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
++K + + R K++YDKP +P++RL S L + + R NP R +N
Sbjct 330 SEKIIA-KERIGARVKKVYDKPKSPYRRLLESPDLPDIFKNELRRRAARLNPVKQKRLVN 388
Query 346 AIQMQLLDLAKTKTEALATARHI 368
M L +L K+ A + I
Sbjct 389 HALMALFELQSQKSLAASALEDI 411
>gi|239617520|ref|YP_002940842.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239618041|ref|YP_002941363.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239618189|ref|YP_002941511.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239506351|gb|ACR79838.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239506872|gb|ACR80359.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
gi|239507020|gb|ACR80507.1| Integrase catalytic region [Kosmotoga olearia TBF 19.5.1]
Length=394
Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/316 (36%), Positives = 166/316 (53%), Gaps = 4/316 (1%)
Query 46 LEHVWALMGMPCGKYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKP 105
L +W +M PCGK L +++ + G L TE +L +SA+T+DR L
Sbjct 72 LVKIWEIMDFPCGKRLEAVMDEVIDNLVRNGHLT---LTEETKRKLLNISASTIDRLLTS 128
Query 106 ARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLT 165
R++M +KG S TKP LL+ I I T + PG +E D V H G S+ G+F +L
Sbjct 129 ERKKMELKGRSHTKPGTLLKKHIRIKTHYEWDDTRPGFVEIDLVGHDGGSVSGDFCYSLN 188
Query 166 MTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQAR 225
M D+ +GW+ A IRN A W L+ I + ++ PF + SD G EFIN + + +
Sbjct 189 MVDVASGWSVVAPIRNKAQIWTLKAIIQLRKTLPFTLLGIHSDNGSEFINRHLYRYCEDE 248
Query 226 DIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTP 285
+ TR+R Y KND HVE KN VVR+ Y+RYDT EE ++L L+ ++L N F P
Sbjct 249 GLLFTRTRSYNKNDNCHVEQKNWSVVRRAVGYYRYDTEEEFQILKELYASLNLYNNHFQP 308
Query 286 TKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQIN 345
+K V N K+ YD+P TP++R+ S +D + + + E + L I
Sbjct 309 NQKIVEKIRKGNKVSKK-YDRPTTPYERIMRSPWVDQDKKDRLRRQHEALDIYKLKSIIT 367
Query 346 AIQMQLLDLAKTKTEA 361
+Q QLL + K++
Sbjct 368 HLQEQLLSIQIDKSKG 383
>gi|339628622|ref|YP_004720265.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY]
gi|339286411|gb|AEJ40522.1| hypothetical protein TPY_2362 [Sulfobacillus acidophilus TPY]
Length=281
Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/269 (41%), Positives = 156/269 (58%), Gaps = 8/269 (2%)
Query 90 ELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCS--DEAPKVPGVIEAD 147
+L MS A++DR+L R R+ +KG S TKP LL+ I + T + D+A PG +E D
Sbjct 4 QLVQMSVASIDRFLAAERRRLEVKGRSVTKPGTLLKQQIPVRTWAEWDDATH-PGFLEID 62
Query 148 TVAHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDS 207
V+H G + GEFA TL + D++TGWTE ++ N A KW++E + RFPFP+ DS
Sbjct 63 LVSHDGGAARGEFAWTLDLVDILTGWTETVALPNKARKWVIEALDTQLSRFPFPIRGIDS 122
Query 208 DCGGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELE 267
D G EFINH + W ++ I TR+R Y KND +VE KN VVR+ Y RY+ E+++
Sbjct 123 DNGSEFINHHLLTWCESHPITFTRARAYHKNDGCYVEQKNWSVVRRFVGYLRYEGAEQVQ 182
Query 268 LLNRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQA---SGVLDAQQ 324
LN L+ + L NFF P +K V R R YD+ TP+QR+ A S V AQ+
Sbjct 183 WLNDLYATLRLYANFFQPLQKAVA-KERRGARTYRRYDQAQTPYQRVLALPDSWVSPAQK 241
Query 325 LSTVAARIEGFNPADLTRQINAIQMQLLD 353
+ + A+ NPA + R + +Q +L D
Sbjct 242 -AVLTAQYLSLNPAAIRRDLLRLQNRLWD 269
>gi|260905151|ref|ZP_05913473.1| Integrase catalytic region [Brevibacterium linens BL2]
Length=218
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 91/189 (49%), Positives = 123/189 (66%), Gaps = 0/189 (0%)
Query 171 TGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQT 230
TGW +++NNAA I+ + P+ +T D D G EFINHD+ W R I T
Sbjct 3 TGWVYTRAVKNNAAVHIVAACTHFVEAVPYLVTGLDFDNGSEFINHDLIDWAAQRKIFFT 62
Query 231 RSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPV 290
R RPY KNDQA +ESKNNH+VR++ FY+RYDT EL L+ LW LV+ R N+FTPTKKP
Sbjct 63 RGRPYTKNDQATIESKNNHLVRRYGFYYRYDTTTELGLMTTLWALVNDRLNYFTPTKKPT 122
Query 291 GYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIEGFNPADLTRQINAIQMQ 350
GY++ GRRKR+YD P TP+ RL SG+L+ +Q++ + A G +P + +I+ IQ +
Sbjct 123 GYSTDSVGRRKRVYDTPRTPFVRLLDSGILNRKQVAELRAYKAGLDPVHIAAEIDRIQQR 182
Query 351 LLDLAKTKT 359
L+ LA KT
Sbjct 183 LIKLAAGKT 191
>gi|13488249|ref|NP_085773.1| hypothetical protein mlr9230 [Mesorhizobium loti MAFF303099]
gi|14028022|dbj|BAB54614.1| mlr9230 [Mesorhizobium loti MAFF303099]
Length=504
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 137/380 (37%), Positives = 188/380 (50%), Gaps = 31/380 (8%)
Query 2 VSTTGMGRSTARRML---TGPGLPEPAEQVDGRRLRARGFSDDARALLEHVWALMGMPCG 58
V TG R A R+L GP GRR R R + + R L +W CG
Sbjct 36 VVITGFHRKHAMRLLRRREGP--------FSGRRARPRIYDEAERNALILLWEASDRVCG 87
Query 59 KYLVVMLELWLPLEAAAGDLDKPFATEAAVAELKAMSAATVDRYLKPARERMRIKGISTT 118
K L +L + + G D +L AMSAAT+DR L+P RE + G
Sbjct 88 KRLKALLSVLIEAMERHGHFDPALEIRG---KLLAMSAATIDRTLRPIREGL---GRPRR 141
Query 119 KPSP-LLRNSITIHTCSDEAPKVPGVIEADTVAHCGPSLIGEFARTLTMTDLVTGWTENA 177
+P+ LR SI I T +D PG +EAD VAH GPS G F +T +TD+ TGWTE A
Sbjct 142 RPAAHALRRSIPIRTSADWDDPAPGFVEADLVAHSGPSTRGSFIQTFVLTDIATGWTECA 201
Query 178 SIRNNAAKWILEGIKECQQRFPFPMTVFDSDCGGEFINHDVAGWLQARDIAQTRSRPYQK 237
+ + + E +++ PF + D+D F+N + + A +I TR RPY+K
Sbjct 202 PLLVREQTLLSTVLTELRKQLPFALLGLDTDNDTVFMNETLKAYCDAANIVFTRCRPYRK 261
Query 238 NDQAHVESKNNHVVRKHAFYWRYDTGEELELLNRLWPLVSLRCNFFTPTKKPVGYTSTVN 297
NDQA VE KN VVR+ Y R++ E LL +L+ L NFF P+ K +
Sbjct 262 NDQAFVEQKNGAVVRRMVGYRRFEGLEAATLLAKLYRSARLFVNFFQPSFKLIAKQRD-G 320
Query 298 GRRKRIYDKPATPWQRLQASGVLDAQQLSTVAARIE----GFNPADLTRQINAIQMQLLD 353
R ++ Y PATP QRL V DA+ V +R++ G +P L R I A+Q +L
Sbjct 321 ARMRKTYSPPATPHQRL----VADARTSDAVRSRLQEIYAGLDPVLLLRDIRAVQERLAA 376
Query 354 LAKTKTEAL---ATARHIDL 370
LA T ++A+ TA+ IDL
Sbjct 377 LADT-SQAIRPDGTAQPIDL 395
>gi|320536591|ref|ZP_08036613.1| integrase core domain protein [Treponema phagedenis F0421]
gi|320146562|gb|EFW38156.1| integrase core domain protein [Treponema phagedenis F0421]
Length=301
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/266 (37%), Positives = 152/266 (58%), Gaps = 1/266 (0%)
Query 90 ELKAMSAATVDRYLKPARERMRIKGISTTKPSPLLRNSITIHTCSDEAPKVPGVIEADTV 149
+L +S+AT+ R+LKP + +KGISTT+P+ L I I T D + PG +E DTV
Sbjct 30 KLGKISSATIGRFLKPEIAKCSVKGISTTRPAKNLNQLIPIRTFFDWDERKPGFLELDTV 89
Query 150 AHCGPSLIGEFARTLTMTDLVTGWTENASIRNNAAKWILEGIKECQQRFPFPMTVFDSDC 209
AHCG S GE+ TLT+TD+ +GWTEN ++ N A +W+ E I++ + + PF M SD
Sbjct 90 AHCGTSTSGEYINTLTVTDIYSGWTENRALLNKAHRWVKEAIEDTKTKLPFVMKGLHSDN 149
Query 210 GGEFINHDVAGWLQARDIAQTRSRPYQKNDQAHVESKNNHVVRKHAFYWRYDTGEELELL 269
GGEF N V W Q I +RSRPY+KND VE KN+ VVR+ Y+R++ + L L+
Sbjct 150 GGEFKNMQVLIWCQENGIDFSRSRPYKKNDNCFVEQKNDSVVRRVIGYYRFEGEQSLRLM 209
Query 270 NRLWPLVSLRCNFFTPTKKPVGYTSTVNGRRKRIYDKPATPWQRLQASGVLDAQQLSTVA 329
L+ + N+F P+ K + ++ + + YD TP+ RL S + ++ + +
Sbjct 210 QELYEVYGCLVNYFFPSMKIIS-KERIDKKVIKKYDTAKTPYSRLLESPDVPEKEKAELR 268
Query 330 ARIEGFNPADLTRQINAIQMQLLDLA 355
R + ++L ++ +Q L+ A
Sbjct 269 RRKAALDLSELLVKVTELQKALIATA 294
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 746616418650
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40