BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2808

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15842345|ref|NP_337382.1|  hypothetical protein MT2875 [Mycoba...   176    2e-42
gi|15609945|ref|NP_217324.1|  hypothetical protein Rv2808 [Mycoba...   174    5e-42
gi|240173505|ref|ZP_04752163.1|  hypothetical protein MkanA1_2961...   167    3e-40
gi|118616853|ref|YP_905185.1|  hypothetical protein MUL_1132 [Myc...   116    1e-24


>gi|15842345|ref|NP_337382.1| hypothetical protein MT2875 [Mycobacterium tuberculosis CDC1551]
 gi|253798107|ref|YP_003031108.1| hypothetical protein TBMG_01165 [Mycobacterium tuberculosis KZN 
1435]
 gi|254551870|ref|ZP_05142317.1| hypothetical protein Mtube_15662 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 29 more sequence titles
 Length=89

 Score =  176 bits (445),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   VSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD  60
           VSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD
Sbjct  5   VSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD  64

Query  61  WVPNDYGLKIERAIDAYLETWPIYR  85
           WVPNDYGLKIERAIDAYLETWPIYR
Sbjct  65  WVPNDYGLKIERAIDAYLETWPIYR  89


>gi|15609945|ref|NP_217324.1| hypothetical protein Rv2808 [Mycobacterium tuberculosis H37Rv]
 gi|31793984|ref|NP_856477.1| hypothetical protein Mb2831 [Mycobacterium bovis AF2122/97]
 gi|121638688|ref|YP_978912.1| hypothetical protein BCG_2826 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 44 more sequence titles
 Length=85

 Score =  174 bits (440),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   VSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD  60
           +SNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD
Sbjct  1   MSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD  60

Query  61  WVPNDYGLKIERAIDAYLETWPIYR  85
           WVPNDYGLKIERAIDAYLETWPIYR
Sbjct  61  WVPNDYGLKIERAIDAYLETWPIYR  85


>gi|240173505|ref|ZP_04752163.1| hypothetical protein MkanA1_29611 [Mycobacterium kansasii ATCC 
12478]
Length=85

 Score =  167 bits (424),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 81/85 (96%), Positives = 82/85 (97%), Gaps = 0/85 (0%)

Query  1   VSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD  60
           +SNVLDAIS EHRPVI QELENRNPALFDELRRTEKPTNEQSDAVID LSDALMKTFGPD
Sbjct  1   MSNVLDAISPEHRPVIAQELENRNPALFDELRRTEKPTNEQSDAVIDALSDALMKTFGPD  60

Query  61  WVPNDYGLKIERAIDAYLETWPIYR  85
           WVPNDYGLKIERAIDAYLETWPIYR
Sbjct  61  WVPNDYGLKIERAIDAYLETWPIYR  85


>gi|118616853|ref|YP_905185.1| hypothetical protein MUL_1132 [Mycobacterium ulcerans Agy99]
 gi|183980510|ref|YP_001848801.1| hypothetical protein MMAR_0481 [Mycobacterium marinum M]
 gi|118568963|gb|ABL03714.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
 gi|183173836|gb|ACC38946.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=89

 Score =  116 bits (290),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 54/85 (64%), Positives = 64/85 (76%), Gaps = 0/85 (0%)

Query  1   VSNVLDAISTEHRPVIEQELENRNPALFDELRRTEKPTNEQSDAVIDVLSDALMKTFGPD  60
           V+N+LD + +EHR +I  EL  RNP L  ELR  +KPTN+QSDAV+D LS AL   +GP 
Sbjct  5   VNNILDVVPSEHRVLIMDELTRRNPDLLAELRTVQKPTNDQSDAVVDALSHALSANYGPG  64

Query  61  WVPNDYGLKIERAIDAYLETWPIYR  85
            VPNDYGL +ERAIDAYLE WPIYR
Sbjct  65  HVPNDYGLAVERAIDAYLEAWPIYR  89



Lambda     K      H
   0.315    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40