BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2811

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|308232250|ref|ZP_07415430.2|  hypothetical protein TMAG_03193 ...   387    6e-106
gi|15609948|ref|NP_217327.1|  hypothetical protein Rv2811 [Mycoba...   386    1e-105
gi|289448470|ref|ZP_06438214.1|  conserved hypothetical protein [...   384    3e-105
gi|289575509|ref|ZP_06455736.1|  conserved hypothetical protein [...   383    1e-104
gi|167967616|ref|ZP_02549893.1|  hypothetical protein MtubH3_0610...   269    1e-70 
gi|294994095|ref|ZP_06799786.1|  hypothetical protein Mtub2_06173...   262    2e-68 
gi|289444360|ref|ZP_06434104.1|  conserved hypothetical protein [...   241    5e-62 
gi|296169419|ref|ZP_06851041.1|  conserved hypothetical protein [...   232    2e-59 
gi|15842347|ref|NP_337384.1|  hypothetical protein MT2878 [Mycoba...   176    1e-42 
gi|340628741|ref|YP_004747193.1|  hypothetical protein MCAN_37911...   165    4e-39 
gi|120401572|ref|YP_951401.1|  hypothetical protein Mvan_0551 [My...   155    4e-36 
gi|258655053|ref|YP_003204209.1|  hypothetical protein Namu_4947 ...   152    3e-35 
gi|111026944|ref|YP_708922.1|  hypothetical protein RHA1_ro11117 ...   139    2e-31 
gi|336117532|ref|YP_004572300.1|  hypothetical protein MLP_18830 ...   139    3e-31 
gi|258651520|ref|YP_003200676.1|  hypothetical protein Namu_1284 ...   134    7e-30 
gi|226334813|ref|YP_002784485.1|  hypothetical protein ROP_pKNR-0...   133    2e-29 
gi|15610907|ref|NP_218288.1|  hypothetical protein Rv3771c [Mycob...   128    4e-28 
gi|119854967|ref|YP_935572.1|  hypothetical protein Mkms_5573 [My...   125    4e-27 
gi|315441603|ref|YP_004074480.1|  RNA polymerase sigma factor, si...  97.1    1e-18 
gi|226349348|ref|YP_002776462.1|  hypothetical protein ROP_pROB01...  77.4    1e-12 
gi|296169410|ref|ZP_06851032.1|  conserved hypothetical protein [...  73.9    1e-11 
gi|78044239|ref|YP_360085.1|  ISChy3, orf1 [Carboxydothermus hydr...  46.6    0.002 
gi|78044213|ref|YP_361433.1|  ISChy3, orf1 [Carboxydothermus hydr...  45.8    0.003 
gi|167628183|ref|YP_001678682.1|  hypothetical protein HM1_0046 [...  43.1    0.024 
gi|291559600|emb|CBL38400.1|  hypothetical protein CL2_14540 [but...  41.2    0.097 
gi|333006170|gb|EGK25679.1|  transposase IS66 family protein [Shi...  38.1    0.69  
gi|332088549|gb|EGI93664.1|  transposase IS66 family protein [Shi...  38.1    0.76  
gi|145226040|ref|YP_001136694.1|  hypothetical protein Mflv_5445 ...  38.1    0.76  
gi|332094570|gb|EGI99616.1|  transposase IS66 family protein [Shi...  37.7    1.0   
gi|332086342|gb|EGI91494.1|  transposase IS66 family protein [Shi...  37.4    1.3   
gi|332995920|gb|EGK15550.1|  transposase IS66 family protein [Shi...  37.4    1.4   
gi|281357906|ref|ZP_06244391.1|  hypothetical protein Vvad_PD1259...  37.0    1.5   
gi|333003611|gb|EGK23149.1|  transposase IS66 family protein [Shi...  37.0    1.6   
gi|332094995|gb|EGJ00034.1|  transposase IS66 family protein [Shi...  36.6    2.0   
gi|332091050|gb|EGI96140.1|  transposase IS66 family protein [Shi...  36.6    2.3   
gi|333002481|gb|EGK22043.1|  transposase IS66 family protein [Shi...  36.6    2.4   
gi|332083450|gb|EGI88675.1|  transposase IS66 family protein [Shi...  36.6    2.4   
gi|335572844|gb|EGM59215.1|  transposase IS66 family protein [Shi...  36.2    2.5   
gi|335575330|gb|EGM61626.1|  transposase IS66 family protein [Shi...  36.2    2.5   
gi|335575322|gb|EGM61618.1|  transposase IS66 family protein [Shi...  36.2    2.5   
gi|345367754|gb|EGW99765.1|  transposase IS66 family protein [Esc...  36.2    2.6   
gi|335572364|gb|EGM58744.1|  transposase IS66 family protein [Shi...  36.2    2.7   
gi|320180591|gb|EFW55521.1|  ISSfl4 ORF3 [Shigella boydii ATCC 9905]  36.2    2.7   
gi|335573262|gb|EGM59625.1|  transposase IS66 family protein [Shi...  36.2    2.7   
gi|332097570|gb|EGJ02549.1|  transposase IS66 family protein [Shi...  36.2    2.8   
gi|333017847|gb|EGK37154.1|  transposase IS66 family protein [Shi...  35.8    3.3   
gi|335574467|gb|EGM60791.1|  transposase IS66 family protein [Shi...  35.8    3.4   
gi|320176337|gb|EFW51396.1|  ISSfl4 ORF3 [Shigella dysenteriae CD...  35.8    3.5   
gi|333011052|gb|EGK30466.1|  transposase IS66 family protein [Shi...  35.8    3.5   
gi|332756642|gb|EGJ86991.1|  transposase IS66 family protein [Shi...  35.8    3.5   


>gi|308232250|ref|ZP_07415430.2| hypothetical protein TMAG_03193 [Mycobacterium tuberculosis SUMu001]
 gi|308369866|ref|ZP_07419331.2| hypothetical protein TMBG_02945 [Mycobacterium tuberculosis SUMu002]
 gi|308371136|ref|ZP_07423946.2| hypothetical protein TMCG_02057 [Mycobacterium tuberculosis SUMu003]
 21 more sequence titles
 Length=215

 Score =  387 bits (993),  Expect = 6e-106, Method: Compositional matrix adjust.
 Identities = 202/202 (100%), Positives = 202/202 (100%), Gaps = 0/202 (0%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG
Sbjct  14   VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  73

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV
Sbjct  74   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  133

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180
            EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV
Sbjct  134  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  193

Query  181  SGGRLLAPGWPGEWVQHESTLP  202
            SGGRLLAPGWPGEWVQHESTLP
Sbjct  194  SGGRLLAPGWPGEWVQHESTLP  215


>gi|15609948|ref|NP_217327.1| hypothetical protein Rv2811 [Mycobacterium tuberculosis H37Rv]
 gi|31793986|ref|NP_856479.1| hypothetical protein Mb2834 [Mycobacterium bovis AF2122/97]
 gi|121638690|ref|YP_978914.1| hypothetical protein BCG_2829 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 41 more sequence titles
 Length=202

 Score =  386 bits (991),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +VTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG
Sbjct  1    MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV
Sbjct  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180
            EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV
Sbjct  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180

Query  181  SGGRLLAPGWPGEWVQHESTLP  202
            SGGRLLAPGWPGEWVQHESTLP
Sbjct  181  SGGRLLAPGWPGEWVQHESTLP  202


>gi|289448470|ref|ZP_06438214.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289421428|gb|EFD18629.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=202

 Score =  384 bits (987),  Expect = 3e-105, Method: Compositional matrix adjust.
 Identities = 200/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +VTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSR+LRGPAGPVELCPRRSRCTGCG
Sbjct  1    MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRKLRGPAGPVELCPRRSRCTGCG  60

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV
Sbjct  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180
            EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV
Sbjct  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180

Query  181  SGGRLLAPGWPGEWVQHESTLP  202
            SGGRLLAPGWPGEWVQHESTLP
Sbjct  181  SGGRLLAPGWPGEWVQHESTLP  202


>gi|289575509|ref|ZP_06455736.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539940|gb|EFD44518.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length=202

 Score =  383 bits (983),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 200/202 (99%), Positives = 201/202 (99%), Gaps = 0/202 (0%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +VTVEADVDQVERRLAAGELSCPSCGGVLAGWGRA SRQLRGPAGPVELCPRRSRCTGCG
Sbjct  1    MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRAGSRQLRGPAGPVELCPRRSRCTGCG  60

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV
Sbjct  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180
            EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV
Sbjct  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180

Query  181  SGGRLLAPGWPGEWVQHESTLP  202
            SGGRLLAPGWPGEWVQHESTLP
Sbjct  181  SGGRLLAPGWPGEWVQHESTLP  202


>gi|167967616|ref|ZP_02549893.1| hypothetical protein MtubH3_06106 [Mycobacterium tuberculosis 
H37Ra]
 gi|297732421|ref|ZP_06961539.1| hypothetical protein MtubKR_15092 [Mycobacterium tuberculosis 
KZN R506]
Length=142

 Score =  269 bits (688),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 142/142 (100%), Gaps = 0/142 (0%)

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            +THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV
Sbjct  1    MTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  60

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  180
            EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV
Sbjct  61   EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAV  120

Query  181  SGGRLLAPGWPGEWVQHESTLP  202
            SGGRLLAPGWPGEWVQHESTLP
Sbjct  121  SGGRLLAPGWPGEWVQHESTLP  142


>gi|294994095|ref|ZP_06799786.1| hypothetical protein Mtub2_06173 [Mycobacterium tuberculosis 
210]
Length=139

 Score =  262 bits (670),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  64   VLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAV  123
            +LLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAV
Sbjct  1    MLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAV  60

Query  124  RSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGG  183
            RSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGG
Sbjct  61   RSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGG  120

Query  184  RLLAPGWPGEWVQHESTLP  202
            RLLAPGWPGEWVQHESTLP
Sbjct  121  RLLAPGWPGEWVQHESTLP  139


>gi|289444360|ref|ZP_06434104.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289417279|gb|EFD14519.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=175

 Score =  241 bits (614),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 131/142 (93%), Positives = 132/142 (93%), Gaps = 1/142 (0%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +VTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG
Sbjct  1    MVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV
Sbjct  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120

Query  121  EA-VRSVFTVWLCAVDADPVMP  141
            EA    V  V    VDADPVMP
Sbjct  121  EAGAVGVHGVGCARVDADPVMP  142


>gi|296169419|ref|ZP_06851041.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895921|gb|EFG75614.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=192

 Score =  232 bits (592),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 134/160 (84%), Gaps = 1/160 (0%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            VVTVEADVD VERRLAAGELSCP+C  VLA WG AR RQLRG  G V LCPRRSRCTGCG
Sbjct  29   VVTVEADVDVVERRLAAGELSCPACSSVLARWGWARPRQLRGRDGSVRLCPRRSRCTGCG  88

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKAT-SRVGFRRIATDVARPAETVRGWLRRFAER  119
            VTHVLLPV+ALLRRADTAAVIVSALAAKA   RVGFRRIA D+ARP ETVRGWLRRFAER
Sbjct  89   VTHVLLPVTALLRRADTAAVIVSALAAKALRRRVGFRRIAADLARPVETVRGWLRRFAER  148

Query  120  VEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALA  159
             EAVRS+FTVWL AVD DPVMP+  GG   DAV  I A+A
Sbjct  149  AEAVRSMFTVWLRAVDPDPVMPEPAGGVVADAVTVIAAVA  188


>gi|15842347|ref|NP_337384.1| hypothetical protein MT2878 [Mycobacterium tuberculosis CDC1551]
 gi|13882644|gb|AAK47198.1| hypothetical protein MT2878 [Mycobacterium tuberculosis CDC1551]
Length=178

 Score =  176 bits (447),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 92/98 (94%), Positives = 92/98 (94%), Gaps = 0/98 (0%)

Query  105  PAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGR  164
            P     G LRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGR
Sbjct  81   PGGDGAGLLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGR  140

Query  165  RFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP  202
            RFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP
Sbjct  141  RFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP  178


>gi|340628741|ref|YP_004747193.1| hypothetical protein MCAN_37911 [Mycobacterium canettii CIPT 
140010059]
 gi|340006931|emb|CCC46122.1| putative uncharacterized protein [Mycobacterium canettii CIPT 
140010059]
Length=121

 Score =  165 bits (417),  Expect = 4e-39, Method: Compositional matrix adjust.
 Identities = 93/121 (77%), Positives = 99/121 (82%), Gaps = 0/121 (0%)

Query  82   VSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMP  141
            +SA A KA SRVGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMP
Sbjct  1    MSAPAEKALSRVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMP  60

Query  142  DAGGGGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTL  201
            DA  G F  AV  I A+   I R+F+L TVSLAETAVAVS GRL+APGWPGEWVQHESTL
Sbjct  61   DAAVGVFAYAVTVIAAVVTVIERQFALSTVSLAETAVAVSSGRLVAPGWPGEWVQHESTL  120

Query  202  P  202
            P
Sbjct  121  P  121


>gi|120401572|ref|YP_951401.1| hypothetical protein Mvan_0551 [Mycobacterium vanbaalenii PYR-1]
 gi|120401588|ref|YP_951417.1| hypothetical protein Mvan_0570 [Mycobacterium vanbaalenii PYR-1]
 gi|120402692|ref|YP_952521.1| hypothetical protein Mvan_1687 [Mycobacterium vanbaalenii PYR-1]
 7 more sequence titles
 Length=199

 Score =  155 bits (391),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 100/196 (52%), Positives = 121/196 (62%), Gaps = 8/196 (4%)

Query  1    VVTVEADVDQVERRLAAGELSCPSC-GGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGC  59
            +VTVE D  +VE RL+ G ++CPSC GGVL GWG ARSRQ+ G   PV   PRR+RC  C
Sbjct  1    MVTVEVDPVRVESRLSGGAIACPSCVGGVLGGWGFARSRQVEGLDHPVR--PRRARCRSC  58

Query  60   GVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAER  119
             VTHVLLPV+ LLRRA  A  I  AL+ +A   VG RRIA  +  P  TVRGWLRR  +R
Sbjct  59   LVTHVLLPVTVLLRRAHGAEQIWMALSTRAEG-VGHRRIAAWLQVPPATVRGWLRRAGQR  117

Query  120  VEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLAE  175
            +E +R+ F         D  +PD  G G+ D V A+    AAIG+RF     L  V+ A+
Sbjct  118  LEPMRAWFLTVAVRTGIDVTIPDGFGCGWRDLVAALRCAVAAIGQRFGPAGLLGAVTPAQ  177

Query  176  TAVAVSGGRLLAPGWP  191
               A SG RLLAPGWP
Sbjct  178  VMAAASGSRLLAPGWP  193


>gi|258655053|ref|YP_003204209.1| hypothetical protein Namu_4947 [Nakamurella multipartita DSM 
44233]
 gi|258558278|gb|ACV81220.1| hypothetical protein Namu_4947 [Nakamurella multipartita DSM 
44233]
Length=197

 Score =  152 bits (384),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 102/195 (53%), Positives = 120/195 (62%), Gaps = 8/195 (4%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +VTVEAD   VE RL AG + CP C GVL  WG AR R++RG      L PRR+RC+ C 
Sbjct  1    MVTVEADQVLVESRLTAGGVPCPVCPGVLTPWGWARRREVRGVG---TLQPRRARCSLCL  57

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPV+ LLRRAD AAVI +AL A+A    G R IA  V  P  T RGWLRR + R+
Sbjct  58   VTHVLLPVTVLLRRADAAAVIWTALVARAAGH-GHRTIAALVGTPTSTARGWLRRMSTRL  116

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLAET  176
            E VR  FTV       D  +PDA G  + D V A+ A   AI  RF     + TV+ A+ 
Sbjct  117  EPVRVHFTVVTRRAGVDQAVPDAAGDAWRDVVAAVAAAWLAITSRFGSAGLVGTVTAAQV  176

Query  177  AVAVSGGRLLAPGWP  191
            A A SGGRLL+PGWP
Sbjct  177  ACASSGGRLLSPGWP  191


>gi|111026944|ref|YP_708922.1| hypothetical protein RHA1_ro11117 [Rhodococcus jostii RHA1]
 gi|110825483|gb|ABH00764.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=218

 Score =  139 bits (351),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 101/196 (52%), Positives = 121/196 (62%), Gaps = 8/196 (4%)

Query  1    VVTVEADVDQVERRLAAGELSCPSC-GGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGC  59
            +VTVE D  +VE RL+ G++SCPSC GGVLAGWG AR R + G A PV   PRR+RC GC
Sbjct  1    MVTVEVDPVRVESRLSRGDMSCPSCTGGVLAGWGFARPRPVAGMAAPVR--PRRARCRGC  58

Query  60   GVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAER  119
             VTHVLLPV+ LLRRA  A +I +ALAAKA    G R IA  +  P  TVRGWLR  A R
Sbjct  59   AVTHVLLPVTLLLRRAYLAELIWAALAAKARGH-GHRPIAQRLGIPGSTVRGWLRVEAAR  117

Query  120  VEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAI----GALAAAIGRRFSLPTVSLAE  175
             +AVRS F         D  +P      + D + A+    GA+ A  GR   L  V+ A+
Sbjct  118  ADAVRSWFLAVAVTTGVDVAVPRTTESVWGDVLAAVHAAHGAITARFGRSAVLGAVTAAQ  177

Query  176  TAVAVSGGRLLAPGWP  191
             AVA S GRLL+PGWP
Sbjct  178  VAVAASAGRLLSPGWP  193


>gi|336117532|ref|YP_004572300.1| hypothetical protein MLP_18830 [Microlunatus phosphovorus NM-1]
 gi|334685312|dbj|BAK34897.1| hypothetical protein MLP_18830 [Microlunatus phosphovorus NM-1]
Length=205

 Score =  139 bits (349),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 94/195 (49%), Positives = 113/195 (58%), Gaps = 7/195 (3%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            ++TVEAD  QVE RLA G L+CP C   L  WG AR R + G  G   L PRR+RC GCG
Sbjct  1    MLTVEADRAQVESRLAGGRLACPGCAASLRPWGWARPRGVWGLPG--LLRPRRARCPGCG  58

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            VTHVLLPV+ LLRRA    VI +A+ A+A    G RRI   V  PA TVRGWLRR   R+
Sbjct  59   VTHVLLPVTVLLRRAYAVEVIGAAVVARADG-AGHRRIGEAVGVPAATVRGWLRRIGTRL  117

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLAET  176
            E  R      +     D ++P A G  + D +  + A  AA+  RF     L  V+  + 
Sbjct  118  ETTRGYLLQVVVRAGVDRLVPKAQGSPWRDLLAGLAAATAAVTSRFGPIGVLGPVTAWQV  177

Query  177  AVAVSGGRLLAPGWP  191
            A A SGGRLLAPGWP
Sbjct  178  AAACSGGRLLAPGWP  192


>gi|258651520|ref|YP_003200676.1| hypothetical protein Namu_1284 [Nakamurella multipartita DSM 
44233]
 gi|258652264|ref|YP_003201420.1| hypothetical protein Namu_2051 [Nakamurella multipartita DSM 
44233]
 gi|258653877|ref|YP_003203033.1| hypothetical protein Namu_3745 [Nakamurella multipartita DSM 
44233]
 gi|258654633|ref|YP_003203789.1| hypothetical protein Namu_4521 [Nakamurella multipartita DSM 
44233]
 gi|258554745|gb|ACV77687.1| hypothetical protein Namu_1284 [Nakamurella multipartita DSM 
44233]
 gi|258555489|gb|ACV78431.1| hypothetical protein Namu_2051 [Nakamurella multipartita DSM 
44233]
 gi|258557102|gb|ACV80044.1| hypothetical protein Namu_3745 [Nakamurella multipartita DSM 
44233]
 gi|258557858|gb|ACV80800.1| hypothetical protein Namu_4521 [Nakamurella multipartita DSM 
44233]
Length=197

 Score =  134 bits (338),  Expect = 7e-30, Method: Compositional matrix adjust.
 Identities = 100/195 (52%), Positives = 120/195 (62%), Gaps = 8/195 (4%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +VTVEA+ D VE RL  G + CP C GVLA WG AR R +RG      L PRR+RC+ C 
Sbjct  1    MVTVEANQDLVESRLTGGGVPCPVCPGVLAPWGWARRRDVRGVG---LLRPRRARCSSCL  57

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
            +THVLLPV+ LLRRAD AAVI +AL A++    G R +A  V  PA TVRGWLRR + R+
Sbjct  58   ITHVLLPVTVLLRRADAAAVIWAALVARSAGH-GHRAVAVLVGAPAPTVRGWLRRMSTRL  116

Query  121  EAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLAET  176
            E VR  FTV       D   PDA G  + D V A+ A   AI  RF     + TV+  + 
Sbjct  117  EPVRVHFTVAARRAGVDQPAPDATGDAWRDVVAAVAAAWVAIASRFGSAGLVGTVTAGQV  176

Query  177  AVAVSGGRLLAPGWP  191
            A A SGGRLL+PGWP
Sbjct  177  ACASSGGRLLSPGWP  191


>gi|226334813|ref|YP_002784485.1| hypothetical protein ROP_pKNR-00410 [Rhodococcus opacus B4]
 gi|226246033|dbj|BAH56133.1| hypothetical protein [Rhodococcus opacus B4]
Length=213

 Score =  133 bits (334),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 99/196 (51%), Positives = 119/196 (61%), Gaps = 8/196 (4%)

Query  1    VVTVEADVDQVERRLAAGELSCPSCG-GVLAGWGRARSRQLRGPAGPVELCPRRSRCTGC  59
            +VTVEAD   VE RLAAG + CPSCG GVL GWG AR+R++ G    +     R+RC  C
Sbjct  1    MVTVEADPVHVESRLAAGTIGCPSCGDGVLGGWGYARARRIVGLGDRLRPR--RARCRAC  58

Query  60   GVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAER  119
             VTHVLLPV+ LLRRA  A +I +AL  +A    G RR+A  V  PA TVRGWLRR AER
Sbjct  59   SVTHVLLPVAVLLRRAYAAELIWAALTVRAEGG-GHRRVAAVVGVPATTVRGWLRRMAER  117

Query  120  VEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLAE  175
            +E VRS F         D  +PD  G  + D + A+   AAA+  RF     +  V+   
Sbjct  118  LEEVRSWFLGVAVVAGVDVTIPDTTGCRWRDVLSAVETAAAAVRSRFGPAGFVGAVTPVR  177

Query  176  TAVAVSGGRLLAPGWP  191
             AVA SGGRLLAPGWP
Sbjct  178  VAVAASGGRLLAPGWP  193


>gi|15610907|ref|NP_218288.1| hypothetical protein Rv3771c [Mycobacterium tuberculosis H37Rv]
 gi|15843394|ref|NP_338431.1| hypothetical protein MT3880 [Mycobacterium tuberculosis CDC1551]
 gi|31794943|ref|NP_857436.1| hypothetical protein Mb3799c [Mycobacterium bovis AF2122/97]
 54 more sequence titles
 Length=108

 Score =  128 bits (322),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 77/104 (75%), Positives = 83/104 (80%), Gaps = 0/104 (0%)

Query  86   AAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVFTVWLCAVDADPVMPDAGG  145
            A KA S+VGFRRIA D+ARPAETVRGWLRRFAER EAVRSVFTV L AVD DPVMPDA  
Sbjct  5    AEKALSQVGFRRIAADLARPAETVRGWLRRFAERAEAVRSVFTVMLRAVDPDPVMPDAAV  64

Query  146  GGFVDAVVAIGALAAAIGRRFSLPTVSLAETAVAVSGGRLLAPG  189
            G F  AV  I A+   I  +F+L TVSLAETAVAVSGGRL+APG
Sbjct  65   GVFAYAVTVIAAVVTVIECQFALSTVSLAETAVAVSGGRLVAPG  108


>gi|119854967|ref|YP_935572.1| hypothetical protein Mkms_5573 [Mycobacterium sp. KMS]
 gi|315441536|ref|YP_004074413.1| hypothetical protein Mspyr1_54160 [Mycobacterium sp. Spyr1]
 gi|315444102|ref|YP_004076981.1| hypothetical protein Mspyr1_25090 [Mycobacterium sp. Spyr1]
 7 more sequence titles
 Length=206

 Score =  125 bits (313),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 96/196 (49%), Positives = 119/196 (61%), Gaps = 8/196 (4%)

Query  1    VVTVEADVDQVERRLAAGELSCPSC-GGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGC  59
            +VTVE D   VE RL  G +SCP+C  GVL GWG AR+R + G    V    RR+RC  C
Sbjct  1    MVTVEVDRVCVESRLVGGAISCPACPDGVLGGWGYARARHVEGLDDRVRP--RRARCRSC  58

Query  60   GVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAER  119
             VTHVLLPV+ LLRRA  A  +  AL+A+A   VG R IA  +  P  TVRGWLRR  +R
Sbjct  59   LVTHVLLPVTMLLRRAYAAERVWMALSARAEG-VGHRGIAARLQVPPSTVRGWLRRAGQR  117

Query  120  VEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLAE  175
            +E++R+ F         D ++PD  G G+ D V A+   A+AIG+RF     L  V+ A 
Sbjct  118  LESMRTWFLTVAVGTGIDVMIPDGLGCGWRDVVAAVMVAASAIGQRFGPAGLLGVVTPAL  177

Query  176  TAVAVSGGRLLAPGWP  191
              VAVSG RLLAPGWP
Sbjct  178  VVVAVSGARLLAPGWP  193


>gi|315441603|ref|YP_004074480.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
 gi|315265258|gb|ADU01999.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium sp. 
Spyr1]
Length=192

 Score = 97.1 bits (240),  Expect = 1e-18, Method: Compositional matrix adjust.
 Identities = 76/192 (40%), Positives = 92/192 (48%), Gaps = 23/192 (11%)

Query  9    DQVERRLAAGELSCPSCGGVLAGWGRARSRQLRGP-AGPVELCPRRSRCTGCGVTHVLLP  67
               E  LA   + CP CGG LA WG AR R +R P A  V + PRR RC  C  TH+LLP
Sbjct  8    QDAEAHLADAVMCCPHCGGTLAKWGYARERTVRAPGAATVTVRPRRLRCRNCTTTHILLP  67

Query  68   VSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERVEAVRSVF  127
             +   RRADT  VI  ALA K    +GFRRIAT + R   TVR WLRR  +         
Sbjct  68   TALQPRRADTTEVIGIALAHKVNG-LGFRRIATLMGRSESTVRRWLRRATD-------TH  119

Query  128  TVWLCAVDADPVM---PDA-----GGGGFVDAVVAIGALAAAIGRR---FSLPTVSLAET  176
              W C   A  ++   P+A       G  +   + I + AA   RR   F  P  +L   
Sbjct  120  LNWACQQGATRLIQLAPEAFTEIRYAGNQLRYTLTILSAAAYWDRRRCGFEEPPWTLIG-  178

Query  177  AVAVSGGRLLAP  188
                + GRLLAP
Sbjct  179  --MYTRGRLLAP  188


>gi|226349348|ref|YP_002776462.1| hypothetical protein ROP_pROB01-01110 [Rhodococcus opacus B4]
 gi|226245263|dbj|BAH55610.1| hypothetical protein [Rhodococcus opacus B4]
Length=195

 Score = 77.4 bits (189),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 59/141 (42%), Positives = 74/141 (53%), Gaps = 6/141 (4%)

Query  51   PRRSRCTGCGVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVR  110
            P R RC  CG TH+LLP +  +RRADTA VI +ALA KA   +GFRRIA  + RP  TVR
Sbjct  54   PTRVRCRDCGATHILLPTALQVRRADTAEVIGNALAHKAKG-LGFRRIAERMGRPESTVR  112

Query  111  GWLRR-FAERVEAV--RSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS  167
             WLRR   E V+ +  R    + L A +A   +    G    DA+  + A A    RRF 
Sbjct  113  RWLRRTTGEHVQWLHRRGTERLGLVAREAFCTIRYV-GNPLGDALCVLSAAAVEDRRRFG  171

Query  168  LPTVSLAETAVAVSGGRLLAP  188
             P        +    GRLL+P
Sbjct  172  FPDPPWDLIGIYTQ-GRLLSP  191


>gi|296169410|ref|ZP_06851032.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295895912|gb|EFG75605.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=48

 Score = 73.9 bits (180),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 36/41 (88%), Positives = 37/41 (91%), Gaps = 0/41 (0%)

Query  162  IGRRFSLPTVSLAETAVAVSGGRLLAPGWPGEWVQHESTLP  202
            I RRF+LP VSLAE AVAVSGGRLLA GWPGEWVQHESTLP
Sbjct  2    IERRFALPEVSLAEVAVAVSGGRLLASGWPGEWVQHESTLP  42


>gi|78044239|ref|YP_360085.1| ISChy3, orf1 [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996354|gb|ABB15253.1| ISChy3, orf1 [Carboxydothermus hydrogenoformans Z-2901]
Length=226

 Score = 46.6 bits (109),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 31/123 (26%), Positives = 53/123 (44%), Gaps = 6/123 (4%)

Query  3    TVEADVDQVERRLAAGELSCPSCGGVLA--GWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +V+  ++     L   +  CP C   ++  GW R +   L G    + +   R RC+ C 
Sbjct  46   SVKEYLENYLNFLEENQWYCPVCSAKMSFHGWYRRKIITLDGTTTRIPIA--RYRCSNCR  103

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
             TH +LP      R  +  +I + +    + +V   R+  +   P  T R W+RRF +R 
Sbjct  104  KTHAILPDFVAPYRHYSQVLIAAVVEEVVSKQVPPERVEGNQDIP--TTRRWIRRFLKRC  161

Query  121  EAV  123
              V
Sbjct  162  HEV  164


>gi|78044213|ref|YP_361433.1| ISChy3, orf1 [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996328|gb|ABB15227.1| ISChy3, orf1 [Carboxydothermus hydrogenoformans Z-2901]
Length=189

 Score = 45.8 bits (107),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 31/123 (26%), Positives = 53/123 (44%), Gaps = 6/123 (4%)

Query  3    TVEADVDQVERRLAAGELSCPSCGGVLA--GWGRARSRQLRGPAGPVELCPRRSRCTGCG  60
            +V+  ++     L   +  CP C   ++  GW R +   L G    + +   R RC+ C 
Sbjct  9    SVKEYLENYLNFLEENQWYCPVCSAKMSFHGWYRRKIITLDGTTTRIPIA--RYRCSNCR  66

Query  61   VTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPAETVRGWLRRFAERV  120
             TH +LP      R  +  +I + +    + +V   R+  +   P  T R W+RRF +R 
Sbjct  67   KTHAILPDFVAPYRHYSQVLIAAVVEEVVSKQVPPERVEGNQDIP--TTRRWIRRFLKRC  124

Query  121  EAV  123
              V
Sbjct  125  HEV  127


>gi|167628183|ref|YP_001678682.1| hypothetical protein HM1_0046 [Heliobacterium modesticaldum Ice1]
 gi|167590923|gb|ABZ82671.1| conserved hypothetical protein [Heliobacterium modesticaldum 
Ice1]
Length=111

 Score = 43.1 bits (100),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 30/92 (33%), Positives = 44/92 (48%), Gaps = 3/92 (3%)

Query  2   VTVEADVDQVERRLAAGELS-CPSCGGVLAGWGRARSRQLRGPAGPVE-LCPRRSRCTGC  59
            TVE D  +   R+   E   CP CG +L+G+   + R +   +G V     RR RC GC
Sbjct  7   YTVEYDEARSVYRIRNMEAPVCPQCGLLLSGYD-TKKRHVIDSSGAVRWFLLRRLRCPGC  65

Query  60  GVTHVLLPVSALLRRADTAAVIVSALAAKATS  91
           G  H+ LP     ++   A +I+  LA  + S
Sbjct  66  GKLHIELPDFMQPKKHYEAQLIMDVLAGHSDS  97


>gi|291559600|emb|CBL38400.1| hypothetical protein CL2_14540 [butyrate-producing bacterium 
SSC/2]
Length=103

 Score = 41.2 bits (95),  Expect = 0.097, Method: Compositional matrix adjust.
 Identities = 30/103 (30%), Positives = 41/103 (40%), Gaps = 6/103 (5%)

Query  17   AGELSCPSCGGVLAGWGRARSRQLRGPAGPVELCPRRSRCTGCGVTHVLLPVSALLRRAD  76
              E  CP CGG L   G  R     G      +  RR RCT CG  H  LP S L  +  
Sbjct  4    ESEHLCPLCGGELKYLGHVRRIMKTGSGHSKWIEVRRLRCTECGTIHRELPNSLLPYKHY  63

Query  77   TAAVIVSALAAKATSRVGFRRIATDVARPAE-TVRGWLRRFAE  118
            ++ +I   ++ + T       I      P E T++ W   F +
Sbjct  64   SSDIINRVVSGEITP-----DILEYEDYPCELTMKHWTEEFTK  101


>gi|333006170|gb|EGK25679.1| transposase IS66 family protein [Shigella flexneri K-218]
Length=371

 Score = 38.1 bits (87),  Expect = 0.69, Method: Compositional matrix adjust.
 Identities = 35/128 (28%), Positives = 55/128 (43%), Gaps = 6/128 (4%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARP-AETVRGWL-RRFAER  119
                LP   + R   +A ++   L +K    +   R +   AR   E  R  + RR +E 
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRRVSEM  245

Query  120  VEAVRSVF  127
             + +R ++
Sbjct  246  ADKLRPLY  253


>gi|332088549|gb|EGI93664.1| transposase IS66 family protein [Shigella boydii 5216-82]
Length=583

 Score = 38.1 bits (87),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 61/156 (40%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
              V LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQVPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|145226040|ref|YP_001136694.1| hypothetical protein Mflv_5445 [Mycobacterium gilvum PYR-GCK]
 gi|145218503|gb|ABP47906.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=86

 Score = 38.1 bits (87),  Expect = 0.76, Method: Compositional matrix adjust.
 Identities = 35/77 (46%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  119  RVEAVRSVFTVWLCAVDADPVMPDAGGGGFVDAVVAIGALAAAIGRRFS----LPTVSLA  174
            RVE++R+ F         D  +PD  G G+ D V AI   AAAIG RF     L  ++  
Sbjct  4    RVESMRAWFLQVAVGTGIDVAIPDGSGCGWSDLVAAIATAAAAIGARFGPAGVLGVMTPP  63

Query  175  ETAVAVSGGRLLAPGWP  191
               VAVSGGRLLAP WP
Sbjct  64   LVMVAVSGGRLLAPCWP  80


>gi|332094570|gb|EGI99616.1| transposase IS66 family protein [Shigella boydii 5216-82]
Length=536

 Score = 37.7 bits (86),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 61/156 (40%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  129  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  188

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
              V LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  189  VQVPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  248

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  249  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  284


>gi|332086342|gb|EGI91494.1| transposase IS66 family protein [Shigella boydii 5216-82]
Length=263

 Score = 37.4 bits (85),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 38/148 (26%), Positives = 57/148 (39%), Gaps = 14/148 (9%)

Query  14   RLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-THVLLPVS  69
            RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V   V LP  
Sbjct  95   RLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQVPLPPK  154

Query  70   ALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRFAERVEAVR  124
             + R   +A ++   L +K    +   R +   AR        T+  W+   A+++  + 
Sbjct  155  PIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLY  214

Query  125  SVFTVWLCA-----VDADPVMPDAGGGG  147
                 ++        D  PV   A G G
Sbjct  215  IALNDYVLEAGKVHADDTPVKVLAPGNG  242


>gi|332995920|gb|EGK15550.1| transposase IS66 family protein [Shigella flexneri K-272]
Length=346

 Score = 37.4 bits (85),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 42/162 (26%), Positives = 64/162 (40%), Gaps = 14/162 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLC---AVDAD--PVMPDAGGGGFVDAVV  153
            A+++  +      ++     V AD  PV   A G G    VV
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKRVV  287


>gi|281357906|ref|ZP_06244391.1| hypothetical protein Vvad_PD1259 [Victivallis vadensis ATCC BAA-548]
 gi|281315564|gb|EFA99592.1| hypothetical protein Vvad_PD1259 [Victivallis vadensis ATCC BAA-548]
Length=232

 Score = 37.0 bits (84),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 38/138 (28%), Positives = 54/138 (40%), Gaps = 18/138 (13%)

Query  37   SRQLRGPAGPVELCPRRSRCTGCGVTHVLLPVSALLRRADTAAVIVSALAAKATSRVGFR  96
             R++R   G  ++   R  C+ CG T   L     L R  T    +  L  +A S   +R
Sbjct  78   ERRIRTSLGEFKMSFWRVSCSACGKTFSPLQRFIHLGRYQTKTNELEKLVIEAASETNYR  137

Query  97   RIATDVARPAE------TVRGW-LRRFAERVEAVRSVFTVWLCAVDADP--VMPDAGG--  145
            R   D+AR  +      T  GW LR   + ++  R V       + + P  +MPD  G  
Sbjct  138  RAVRDLARDGKLPVSFHTAHGWVLRTDCDEIDLSRQV-------IGSVPIQIMPDGTGFK  190

Query  146  GGFVDAVVAIGALAAAIG  163
            G   D     G L   IG
Sbjct  191  GEGRDGKARKGDLKVVIG  208


>gi|333003611|gb|EGK23149.1| transposase IS66 family protein [Shigella flexneri K-272]
Length=346

 Score = 37.0 bits (84),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 42/162 (26%), Positives = 64/162 (40%), Gaps = 14/162 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLC---AVDAD--PVMPDAGGGGFVDAVV  153
            A+++  +      ++     V AD  PV   A G G    VV
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKRVV  287


>gi|332094995|gb|EGJ00034.1| transposase IS66 family protein [Shigella boydii 5216-82]
Length=511

 Score = 36.6 bits (83),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 61/156 (40%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  129  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  188

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
              V LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  189  VQVPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  248

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  249  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  284


>gi|332091050|gb|EGI96140.1| transposase IS66 family protein [Shigella dysenteriae 155-74]
Length=429

 Score = 36.6 bits (83),  Expect = 2.3, Method: Compositional matrix adjust.
 Identities = 37/149 (25%), Positives = 56/149 (38%), Gaps = 14/149 (9%)

Query  13   RRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-THVLLPV  68
             RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V     LP 
Sbjct  29   HRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPP  88

Query  69   SALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRFAERVEAV  123
              + R   +A ++   L +K    +   R +   AR        T+  W+   A+++  +
Sbjct  89   KPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPL  148

Query  124  RSVFTVWLCA-----VDADPVMPDAGGGG  147
                  ++        D  PV   A G G
Sbjct  149  YIALNDYVLEAGKVHADDTPVKVLAPGNG  177


>gi|333002481|gb|EGK22043.1| transposase IS66 family protein [Shigella flexneri K-218]
Length=317

 Score = 36.6 bits (83),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 34/128 (27%), Positives = 55/128 (43%), Gaps = 6/128 (4%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARP-AETVRGWLRRF-AER  119
                LP   + R   +A ++   L +K    +   R +   AR   E  R  + R+ +E 
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMERWVSEM  245

Query  120  VEAVRSVF  127
             + +R ++
Sbjct  246  ADKLRPLY  253


>gi|332083450|gb|EGI88675.1| transposase IS66 family protein [Shigella dysenteriae 155-74]
 gi|332083774|gb|EGI88992.1| transposase IS66 family protein [Shigella dysenteriae 155-74]
 gi|332083919|gb|EGI89130.1| transposase IS66 family protein [Shigella dysenteriae 155-74]
 10 more sequence titles
 Length=429

 Score = 36.6 bits (83),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 37/149 (25%), Positives = 56/149 (38%), Gaps = 14/149 (9%)

Query  13   RRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-THVLLPV  68
             RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V     LP 
Sbjct  29   HRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPP  88

Query  69   SALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRFAERVEAV  123
              + R   +A ++   L +K    +   R +   AR        T+  W+   A+++  +
Sbjct  89   KPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPL  148

Query  124  RSVFTVWLCA-----VDADPVMPDAGGGG  147
                  ++        D  PV   A G G
Sbjct  149  YIALNDYVLEAGKVHADDTPVKVLAPGNG  177


>gi|335572844|gb|EGM59215.1| transposase IS66 family protein [Shigella flexneri J1713]
Length=335

 Score = 36.2 bits (82),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWISEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|335575330|gb|EGM61626.1| transposase IS66 family protein [Shigella flexneri J1713]
Length=533

 Score = 36.2 bits (82),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWISEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|335575322|gb|EGM61618.1| transposase IS66 family protein [Shigella flexneri J1713]
Length=533

 Score = 36.2 bits (82),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWISEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|345367754|gb|EGW99765.1| transposase IS66 family protein [Escherichia coli G58-1]
Length=533

 Score = 36.2 bits (82),  Expect = 2.6, Method: Compositional matrix adjust.
 Identities = 35/128 (28%), Positives = 55/128 (43%), Gaps = 6/128 (4%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARP-AETVRGWLRRF-AER  119
                LP   + R   +A ++   L +K    +   R +   AR   E  R  + R+ +E 
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  120  VEAVRSVF  127
             + +R +F
Sbjct  246  ADKLRPLF  253


>gi|335572364|gb|EGM58744.1| transposase IS66 family protein [Shigella flexneri J1713]
 gi|335573336|gb|EGM59693.1| transposase IS66 family protein [Shigella flexneri J1713]
 gi|335573362|gb|EGM59719.1| transposase IS66 family protein [Shigella flexneri J1713]
Length=533

 Score = 36.2 bits (82),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWISEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|320180591|gb|EFW55521.1| ISSfl4 ORF3 [Shigella boydii ATCC 9905]
Length=484

 Score = 36.2 bits (82),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  77   AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  136

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  137  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQVVELSRNTMVRWVSEM  196

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  197  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  232


>gi|335573262|gb|EGM59625.1| transposase IS66 family protein [Shigella flexneri J1713]
Length=477

 Score = 36.2 bits (82),  Expect = 2.7, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  70   AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  129

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  130  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  189

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  190  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  225


>gi|332097570|gb|EGJ02549.1| transposase IS66 family protein [Shigella dysenteriae 155-74]
Length=186

 Score = 36.2 bits (82),  Expect = 2.8, Method: Compositional matrix adjust.
 Identities = 31/117 (27%), Positives = 47/117 (41%), Gaps = 9/117 (7%)

Query  13   RRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-THVLLPV  68
             RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V     LP 
Sbjct  29   HRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPP  88

Query  69   SALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRFAERV  120
              + R   +A ++   L +K    +   R +   AR        T+  W+   A+++
Sbjct  89   KPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKL  145


>gi|333017847|gb|EGK37154.1| transposase IS66 family protein [Shigella flexneri K-227]
Length=294

 Score = 35.8 bits (81),  Expect = 3.3, Method: Compositional matrix adjust.
 Identities = 41/165 (25%), Positives = 65/165 (40%), Gaps = 14/165 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLC---AVDAD--PVMPDAGGGGFVDAVVAIG  156
            A+++  +      ++     V AD  PV   A G G      ++G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKNGSSVG  290


>gi|335574467|gb|EGM60791.1| transposase IS66 family protein [Shigella flexneri J1713]
Length=533

 Score = 35.8 bits (81),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 37/149 (25%), Positives = 56/149 (38%), Gaps = 14/149 (9%)

Query  13   RRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-THVLLPV  68
             RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V     LP 
Sbjct  133  HRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPP  192

Query  69   SALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRFAERVEAV  123
              + R   +A ++   L +K    +   R +   AR        T+  W+   A+++  +
Sbjct  193  KPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPL  252

Query  124  RSVFTVWLCA-----VDADPVMPDAGGGG  147
                  ++        D  PV   A G G
Sbjct  253  YIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|320176337|gb|EFW51396.1| ISSfl4 ORF3 [Shigella dysenteriae CDC 74-1112]
Length=533

 Score = 35.8 bits (81),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|333011052|gb|EGK30466.1| transposase IS66 family protein [Shigella flexneri K-272]
Length=547

 Score = 35.8 bits (81),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281


>gi|332756642|gb|EGJ86991.1| transposase IS66 family protein [Shigella flexneri K-671]
Length=317

 Score = 35.8 bits (81),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 38/156 (25%), Positives = 60/156 (39%), Gaps = 14/156 (8%)

Query  6    ADVDQVERRLAAGELSCPSCGGVLAGWGRARSRQL---RGPAGPVELCPRRSRCTGCGV-  61
            A++ +   RL   E SCP+CGGVL   G   S QL         +E    +  C+ C V 
Sbjct  126  AELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVI  185

Query  62   THVLLPVSALLRRADTAAVIVSALAAKATSRVGFRRIATDVARPA-----ETVRGWLRRF  116
                LP   + R   +A ++   L +K    +   R +   AR        T+  W+   
Sbjct  186  VQAPLPPQPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEM  245

Query  117  AERVEAVRSVFTVWLCA-----VDADPVMPDAGGGG  147
            A+++  +      ++        D  PV   A G G
Sbjct  246  ADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNG  281



Lambda     K      H
   0.322    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 220408776486


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40