BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2812 Length=469 Score E Sequences producing significant alignments: (Bits) Value gi|15609949|ref|NP_217328.1| transposase [Mycobacterium tubercul... 944 0.0 gi|15842348|ref|NP_337385.1| IS1604 transposase [Mycobacterium t... 942 0.0 gi|289575511|ref|ZP_06455738.1| transposase [Mycobacterium tuber... 936 0.0 gi|308232251|ref|ZP_07415431.2| transposase [Mycobacterium tuber... 927 0.0 gi|308369867|ref|ZP_07419332.2| transposase [Mycobacterium tuber... 923 0.0 gi|289758936|ref|ZP_06518314.1| transposase [Mycobacterium tuber... 909 0.0 gi|308375475|ref|ZP_07444053.2| transposase [Mycobacterium tuber... 861 0.0 gi|296169409|ref|ZP_06851031.1| IS1604 transposase [Mycobacteriu... 801 0.0 gi|111026943|ref|YP_708921.1| transposase [Rhodococcus jostii RH... 561 6e-158 gi|226334812|ref|YP_002784484.1| putative transposase [Rhodococc... 553 2e-155 gi|119854966|ref|YP_935571.1| integrase catalytic subunit [Mycob... 537 1e-150 gi|315441535|ref|YP_004074412.1| Mu transposase/integrase [Mycob... 537 2e-150 gi|289762987|ref|ZP_06522365.1| transposase [Mycobacterium tuber... 536 3e-150 gi|31793988|ref|NP_856481.1| transposase [Mycobacterium bovis AF... 531 6e-149 gi|145226041|ref|YP_001136695.1| integrase catalytic subunit [My... 528 1e-147 gi|120401589|ref|YP_951418.1| integrase catalytic subunit [Mycob... 526 2e-147 gi|258655052|ref|YP_003204208.1| Integrase catalytic subunit [Na... 510 2e-142 gi|336117533|ref|YP_004572301.1| putative transposase [Microluna... 503 3e-140 gi|258651521|ref|YP_003200677.1| Integrase catalytic subunit [Na... 503 3e-140 gi|258653876|ref|YP_003203032.1| Integrase catalytic subunit [Na... 499 3e-139 gi|326904428|gb|EGE51361.1| hypothetical protein TBPG_02330 [Myc... 477 2e-132 gi|31793987|ref|NP_856480.1| transposase [Mycobacterium bovis AF... 398 1e-108 gi|51893403|ref|YP_076094.1| transposase [Symbiobacterium thermo... 263 5e-68 gi|51893858|ref|YP_076549.1| transposase [Symbiobacterium thermo... 263 6e-68 gi|302556465|ref|ZP_07308807.1| transposase [Streptomyces virido... 257 3e-66 gi|323702274|ref|ZP_08113940.1| Integrase catalytic region [Desu... 246 5e-63 gi|296132015|ref|YP_003639262.1| Integrase catalytic region [The... 236 5e-60 gi|339628323|ref|YP_004719966.1| transposase [Sulfobacillus acid... 224 3e-56 gi|51891192|ref|YP_073883.1| putative transposase [Symbiobacteri... 218 1e-54 gi|301057267|ref|ZP_07198393.1| integrase core domain protein [d... 216 8e-54 gi|301057918|ref|ZP_07198980.1| integrase core domain protein [d... 214 2e-53 gi|121533422|ref|ZP_01665250.1| Integrase, catalytic region [The... 207 3e-51 gi|339629400|ref|YP_004721043.1| transposase [Sulfobacillus acid... 206 7e-51 gi|339323942|ref|YP_004682835.1| integrase catalytic region [Cup... 204 2e-50 gi|301059593|ref|ZP_07200505.1| integrase core domain protein [d... 202 7e-50 gi|148263178|ref|YP_001229884.1| integrase catalytic subunit [Ge... 202 8e-50 gi|344201023|ref|YP_004785349.1| integrase catalytic subunit [Ac... 197 4e-48 gi|257091592|ref|YP_003165235.1| hypothetical protein CAP2UW1_46... 195 1e-47 gi|94266440|ref|ZP_01290134.1| Integrase, catalytic region [delt... 194 2e-47 gi|94263900|ref|ZP_01287704.1| Integrase, catalytic region [delt... 194 3e-47 gi|94263329|ref|ZP_01287144.1| Integrase, catalytic region [delt... 193 4e-47 gi|301062948|ref|ZP_07203521.1| integrase core domain protein [d... 193 5e-47 gi|94266898|ref|ZP_01290554.1| Integrase, catalytic region [delt... 193 7e-47 gi|78044774|ref|YP_361434.1| ISChy3, transposase [Carboxydotherm... 192 1e-46 gi|255019415|ref|ZP_05291523.1| Integrase, catalytic region [Aci... 189 8e-46 gi|303243221|ref|ZP_07329645.1| Integrase catalytic region [Acet... 187 3e-45 gi|317134049|ref|YP_004089960.1| Integrase catalytic region [Rum... 187 4e-45 gi|340781499|ref|YP_004748106.1| integrase catalytic subunit [Ac... 186 1e-44 gi|78043439|ref|YP_361311.1| ISChy6, transposase [Carboxydotherm... 186 1e-44 gi|333922969|ref|YP_004496549.1| integrase catalytic subunit [De... 180 4e-43 >gi|15609949|ref|NP_217328.1| transposase [Mycobacterium tuberculosis H37Rv] gi|148662654|ref|YP_001284177.1| putative transposase [Mycobacterium tuberculosis H37Ra] gi|167967615|ref|ZP_02549892.1| putative transposase [Mycobacterium tuberculosis H37Ra] gi|307085512|ref|ZP_07494625.1| transposase [Mycobacterium tuberculosis SUMu012] gi|1648909|emb|CAB03635.1| PROBABLE TRANSPOSASE [Mycobacterium tuberculosis H37Rv] gi|148506806|gb|ABQ74615.1| putative transposase [Mycobacterium tuberculosis H37Ra] gi|308364957|gb|EFP53808.1| transposase [Mycobacterium tuberculosis SUMu012] Length=469 Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/469 (99%), Positives = 469/469 (100%), Gaps = 0/469 (0%) Query 1 VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 +AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR Sbjct 1 MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR Sbjct 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 Query 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT Sbjct 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 Query 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA Sbjct 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 Query 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT Sbjct 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 Query 301 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN Sbjct 301 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 Query 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK 420 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK Sbjct 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK 420 Query 421 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 421 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 >gi|15842348|ref|NP_337385.1| IS1604 transposase [Mycobacterium tuberculosis CDC1551] gi|121638691|ref|YP_978915.1| putative transposase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824001|ref|YP_001288755.1| transposase [Mycobacterium tuberculosis F11] 43 more sequence titles Length=469 Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/469 (99%), Positives = 468/469 (99%), Gaps = 0/469 (0%) Query 1 VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 +AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR Sbjct 1 MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR Sbjct 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 Query 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT Sbjct 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 Query 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA Sbjct 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 Query 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT Sbjct 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 Query 301 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN Sbjct 301 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 Query 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK 420 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPM RAIPYHIGRHSHPKAKPETPTAPPK Sbjct 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPK 420 Query 421 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 421 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 >gi|289575511|ref|ZP_06455738.1| transposase [Mycobacterium tuberculosis K85] gi|339632823|ref|YP_004724465.1| transposase [Mycobacterium africanum GM041182] gi|289539942|gb|EFD44520.1| transposase [Mycobacterium tuberculosis K85] gi|339332179|emb|CCC27887.1| putative transposase [Mycobacterium africanum GM041182] Length=469 Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/469 (99%), Positives = 466/469 (99%), Gaps = 0/469 (0%) Query 1 VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 +AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR Sbjct 1 MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR Sbjct 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 Query 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT Sbjct 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 Query 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA Sbjct 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 Query 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVE TGEPDVVGRHYVADLAEL RLFT Sbjct 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVENTGEPDVVGRHYVADLAELTRLFT 300 Query 301 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN Sbjct 301 AWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 Query 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK 420 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPM RAIPYHIGRHSHPKAKPETPTAPPK Sbjct 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPK 420 Query 421 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 421 PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 >gi|308232251|ref|ZP_07415431.2| transposase [Mycobacterium tuberculosis SUMu001] gi|308379326|ref|ZP_07485870.2| transposase [Mycobacterium tuberculosis SUMu010] gi|308380479|ref|ZP_07490088.2| transposase [Mycobacterium tuberculosis SUMu011] gi|308214601|gb|EFO74000.1| transposase [Mycobacterium tuberculosis SUMu001] gi|308357470|gb|EFP46321.1| transposase [Mycobacterium tuberculosis SUMu010] gi|308361419|gb|EFP50270.1| transposase [Mycobacterium tuberculosis SUMu011] Length=460 Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/460 (99%), Positives = 460/460 (100%), Gaps = 0/460 (0%) Query 10 VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW 69 +RAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW Sbjct 1 MRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW 60 Query 70 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 129 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE Sbjct 61 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 120 Query 130 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH 189 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH Sbjct 121 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH 180 Query 190 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV 249 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV Sbjct 181 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV 240 Query 250 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR 309 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR Sbjct 241 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR 300 Query 310 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV 369 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV Sbjct 301 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV 360 Query 370 GRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL 429 GRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL Sbjct 361 GRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL 420 Query 430 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 421 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 460 >gi|308369867|ref|ZP_07419332.2| transposase [Mycobacterium tuberculosis SUMu002] gi|308371137|ref|ZP_07423947.2| transposase [Mycobacterium tuberculosis SUMu003] gi|308374697|ref|ZP_07437023.2| transposase [Mycobacterium tuberculosis SUMu006] 7 more sequence titles Length=460 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/460 (99%), Positives = 459/460 (99%), Gaps = 0/460 (0%) Query 10 VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW 69 +RAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW Sbjct 1 MRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW 60 Query 70 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 129 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE Sbjct 61 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 120 Query 130 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH 189 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH Sbjct 121 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH 180 Query 190 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV 249 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV Sbjct 181 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV 240 Query 250 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR 309 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR Sbjct 241 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR 300 Query 310 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV 369 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV Sbjct 301 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV 360 Query 370 GRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL 429 GRKVELVFDPFDLTRIEVRLAGAPM RAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL Sbjct 361 GRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL 420 Query 430 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 421 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 460 >gi|289758936|ref|ZP_06518314.1| transposase [Mycobacterium tuberculosis T85] gi|289714500|gb|EFD78512.1| transposase [Mycobacterium tuberculosis T85] Length=460 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/460 (99%), Positives = 453/460 (99%), Gaps = 0/460 (0%) Query 10 VRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW 69 +RAE +FRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW Sbjct 1 MRAEAREGDRVFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRW 60 Query 70 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 129 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE Sbjct 61 IRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 120 Query 130 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH 189 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH Sbjct 121 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDH 180 Query 190 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV 249 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV Sbjct 181 SRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLV 240 Query 250 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR 309 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR Sbjct 241 HSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHR 300 Query 310 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV 369 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV Sbjct 301 SVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALV 360 Query 370 GRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL 429 GRKVELVFDPFDLTRIEVRLAGAPM RAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL Sbjct 361 GRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQL 420 Query 430 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 421 IETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 460 >gi|308375475|ref|ZP_07444053.2| transposase [Mycobacterium tuberculosis SUMu007] gi|308346188|gb|EFP35039.1| transposase [Mycobacterium tuberculosis SUMu007] Length=428 Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/428 (99%), Positives = 427/428 (99%), Gaps = 0/428 (0%) Query 42 MVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAV 101 MVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAV Sbjct 1 MVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAV 60 Query 102 ALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHP 161 ALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHP Sbjct 61 ALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHP 120 Query 162 NALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVP 221 NALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVP Sbjct 121 NALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVP 180 Query 222 NAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEP 281 NAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEP Sbjct 181 NAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEP 240 Query 282 DVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAF 341 DVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAF Sbjct 241 DVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAF 300 Query 342 LWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYH 401 LWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPM RAIPYH Sbjct 301 LWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYH 360 Query 402 IGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLL 461 IGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLL Sbjct 361 IGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLL 420 Query 462 TGQEAQPK 469 TGQEAQPK Sbjct 421 TGQEAQPK 428 >gi|296169409|ref|ZP_06851031.1| IS1604 transposase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895911|gb|EFG75604.1| IS1604 transposase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=468 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/470 (88%), Positives = 433/470 (93%), Gaps = 3/470 (0%) Query 1 VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 + VGDDE +VRAERAR IGLFRYQLI EAA+ AHSTK+RGK+VRELASREHTDPFGRRVR Sbjct 1 MVVGDDEARVRAERARVIGLFRYQLIREAAEPAHSTKERGKIVRELASREHTDPFGRRVR 60 Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 ISRQTIDRWIR WRAGGFDALVP+PRQCTPRTPAEVLELAVALRRENP RTAAAIRRIL Sbjct 61 ISRQTIDRWIRDWRAGGFDALVPSPRQCTPRTPAEVLELAVALRRENPARTAAAIRRILL 120 Query 121 TQLGWAPDERTLQRNFHRLGLTGAT-TGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRK 179 TQLGWAPDERTLQRNFHRLGLT T GSAP VFGRFEAEHPN LWTGD LHGI I RK Sbjct 121 TQLGWAPDERTLQRNFHRLGLTAGTGCGSAP-VFGRFEAEHPNDLWTGDALHGIAIAARK 179 Query 180 TYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLR 239 TYLFAFLDDHSRL+PGYRWG+AEDTVRLAAALRPALASRGVP AVYVDNGS Y+D WLLR Sbjct 180 TYLFAFLDDHSRLLPGYRWGYAEDTVRLAAALRPALASRGVPKAVYVDNGSAYIDTWLLR 239 Query 240 ACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLF 299 ACAKLGVRLVHSTP RP+GRGKIERFFRTVREQFLVEITGEPDV GRH+VADLAELNRLF Sbjct 240 ACAKLGVRLVHSTPHRPEGRGKIERFFRTVREQFLVEITGEPDVAGRHHVADLAELNRLF 299 Query 300 TAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHG 359 AWVETVYHR+VHSETGQTPLARW A GP+ LPAPE LTEAFLWEEHRRVTKTATVSLHG Sbjct 300 AAWVETVYHRTVHSETGQTPLARWCASGPVGLPAPEALTEAFLWEEHRRVTKTATVSLHG 359 Query 360 NRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPP 419 N YE+DPALVGRKVELVFDPFDLTRIEVRLAG PM AIP+HIGRHSHPKAKPETP+ PP Sbjct 360 NSYEVDPALVGRKVELVFDPFDLTRIEVRLAGVPMGLAIPHHIGRHSHPKAKPETPSIPP 419 Query 420 KPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 KP+G+DYA+LIETAH ELARGVNY ALTG ADQIPGQLDLLTG+EAQP+ Sbjct 420 KPTGVDYARLIETAHQTELARGVNYAALTG-ADQIPGQLDLLTGEEAQPR 468 >gi|111026943|ref|YP_708921.1| transposase [Rhodococcus jostii RHA1] gi|110825482|gb|ABH00763.1| probable transposase [Rhodococcus jostii RHA1] Length=490 Score = 561 bits (1447), Expect = 6e-158, Method: Compositional matrix adjust. Identities = 298/473 (64%), Positives = 344/473 (73%), Gaps = 19/473 (4%) Query 6 DEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQT 65 D+EK R ER+ A+GLFRYQLI A DA STK RG++VRE+ASR+HTDPFG RVR SR T Sbjct 4 DDEK-RRERSHAVGLFRYQLICPALDAGLSTKARGRLVREIASRQHTDPFGTRVRYSRDT 62 Query 66 IDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGW 125 +DRWIR +RAGGF+ L+P R TPRT LELA +L+RENP RT A ++RILR GW Sbjct 63 LDRWIRRYRAGGFEELIPTTRAGTPRTDTATLELAASLKRENPARTVAQVQRILRASAGW 122 Query 126 APDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAF 185 AP E TL R+FHRL L G G+AP VFGR EAE+PN WTGD LHG RI RKTYLFAF Sbjct 123 APSESTLLRHFHRLELIGPAAGNAPTVFGRSEAENPNDRWTGDALHGPRIGGRKTYLFAF 182 Query 186 LDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLG 245 LDDHSRL+ GYR+G +EDTVRL AL PALA+RGVP +VYVDNGS +VDAWLLRACAKLG Sbjct 183 LDDHSRLITGYRFGFSEDTVRLGVALEPALAARGVPGSVYVDNGSAFVDAWLLRACAKLG 242 Query 246 VRLVHSTPGRPQGRGKIERFFRTVREQFLVEI--TGEPDVV--GRHYVADLAELNRLFTA 301 +RLVHSTP RPQGRGKIERFFRTVREQFLVE+ T D+ G + L ELNRL T Sbjct 243 IRLVHSTPHRPQGRGKIERFFRTVREQFLVEVADTTAEDLTAAGLDHRTALLELNRLLTG 302 Query 302 WVETVYHRSVHSETGQTPLARWSAG----GPIP-LPAPETLTEAFLWEEHRRVTKTATVS 356 W+E YHR VHSETGQ+PL RW +G G P +P LTEAFLW E+R VTKTATVS Sbjct 303 WIEVEYHRRVHSETGQSPLDRWESGWSRLGRTPAMPTAADLTEAFLWSEYRTVTKTATVS 362 Query 357 LHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPT 416 LHGN Y++D ALVGRKVELVF PFD+ IEVR AP RA+P++I RH HPKA+PE P Sbjct 363 LHGNTYQVDHALVGRKVELVFSPFDMETIEVRYRDAPHGRAVPHNITRHVHPKARPEIPE 422 Query 417 AP-PKPSGIDYAQLIETAHAAEL--ARGVNYTALTGAAD------QIPGQLDL 460 P P +GIDY L H ++ R + Y AL G D Q+PGQL + Sbjct 423 RPTPAATGIDYLALTAQTHHEQVRSDRRIGYHALYGPTDDDNGGEQLPGQLSI 475 >gi|226334812|ref|YP_002784484.1| putative transposase [Rhodococcus opacus B4] gi|226246032|dbj|BAH56132.1| putative transposase [Rhodococcus opacus B4] Length=493 Score = 553 bits (1426), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 308/468 (66%), Positives = 346/468 (74%), Gaps = 19/468 (4%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 +E R ERA+AIGLFRY+LI A D STKQRGK+VRE+A+ H DPFG +VRISR+T+ Sbjct 4 DEHKRRERAQAIGLFRYRLICPALDEGLSTKQRGKLVREIAAEPHADPFGNQVRISRETL 63 Query 67 DRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWA 126 DRWIR +R GGF+ALVP PR+ RT +VLELA +L+RENP RT A + RILRT GWA Sbjct 64 DRWIRRYRRGGFEALVPEPRRLAARTDTQVLELAASLKRENPTRTVAQVARILRTATGWA 123 Query 127 PDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFL 186 P E TL R+FHR+ L G G APAVFGRFEA PN LW GD LHG RI RKTYLFAF+ Sbjct 124 PSESTLLRHFHRVDLMGPGAGEAPAVFGRFEAADPNELWCGDALHGPRIGDRKTYLFAFV 183 Query 187 DDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGV 246 DDHSRL+PGYR+G AEDTVRLAAAL+PALA+RGVP A+YVDNGS +VDAWLLRACAKLGV Sbjct 184 DDHSRLLPGYRFGFAEDTVRLAAALKPALAARGVPRAIYVDNGSAFVDAWLLRACAKLGV 243 Query 247 RLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPD----VVGRHYVADLAELNRLFTAW 302 RLVHSTPGRPQGRGKIERFFRTVREQFLVE+T G + A L E+NRLFTAW Sbjct 244 RLVHSTPGRPQGRGKIERFFRTVREQFLVEVTDTSSEDLAAAGVDHAAALLEMNRLFTAW 303 Query 303 VETVYHRSVHSETGQTPLARWSAG----GPIP-LPAPETLTEAFLWEEHRRVTKTATVSL 357 VET YHR VHSETGQ+PLARW G G P +P LTEAFLW EHR VTKTATVSL Sbjct 304 VETEYHRRVHSETGQSPLARWQDGWDRLGRTPAMPTAADLTEAFLWSEHRTVTKTATVSL 363 Query 358 HGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTA 417 H N YE+DPALVGRKVELVF PFDL +EVR G A P+ I RH+HPKAKPET TA Sbjct 364 HANVYEVDPALVGRKVELVFSPFDLETLEVRYRGKSFGTATPHTISRHAHPKAKPET-TA 422 Query 418 PPKP--SGIDYAQLIETAHAAELARG--VNYTALTG-----AADQIPG 456 P P +GIDY L AH +L R + Y AL AAD+ P Sbjct 423 PQSPAQTGIDYLALTAVAHHEQLRRDERIGYHALYSTTHGHAADENPA 470 >gi|119854966|ref|YP_935571.1| integrase catalytic subunit [Mycobacterium sp. KMS] gi|119697684|gb|ABL94756.1| Integrase, catalytic region [Mycobacterium sp. KMS] Length=510 Score = 537 bits (1384), Expect = 1e-150, Method: Compositional matrix adjust. Identities = 292/472 (62%), Positives = 340/472 (73%), Gaps = 18/472 (3%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 E+ R ERA AIGLFRYQ+I A + ST+QRG++VRE+A R H DPFG +V+I+R T+ Sbjct 28 EDHKRRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQVQIARATL 87 Query 67 DRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWA 126 DRWIR +R GGF+ALVP PR+ RT +VLELA +L+RENP RTAA + RILRT GWA Sbjct 88 DRWIRRYRGGGFEALVPEPRRLATRTDVQVLELAASLKRENPARTAAQVARILRTATGWA 147 Query 127 PDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFL 186 P E TL R+FHR L G G + VFGRFEA PN LW GD LHG R+ RKTYLFAFL Sbjct 148 PSESTLLRHFHRCELMGPAAGQSAEVFGRFEAPDPNELWVGDALHGPRVGDRKTYLFAFL 207 Query 187 DDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGV 246 DDHSRLV G+R+G AEDTVRLAAAL+PALA+RGVP ++YVDNGS +VDAWLLRACAKLG+ Sbjct 208 DDHSRLVVGHRFGFAEDTVRLAAALKPALAARGVPASIYVDNGSAFVDAWLLRACAKLGI 267 Query 247 RLVHSTPGRPQGRGKIERFFRTVREQFLVEITG----EPDVVGRHYVADLAELNRLFTAW 302 RLVHS PGRPQGRGKIERFFRTVREQFLVE+T + G + L ELNRLF AW Sbjct 268 RLVHSAPGRPQGRGKIERFFRTVREQFLVEVTDTTAEDLAAAGVDHAGALLELNRLFMAW 327 Query 303 VETVYHRSVHSETGQTPLARWSA-----GGPIPLPAPETLTEAFLWEEHRRVTKTATVSL 357 VET YHR +H+ETGQ+PLARW A G P LP LTEAFLW E R VTKTATVSL Sbjct 328 VETEYHRRIHTETGQSPLARWEAGFDRLGHPAALPTAADLTEAFLWSEFRIVTKTATVSL 387 Query 358 HGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPT- 416 H N Y++DPALVGR+VELVF PFDL IEVR +AI + I RH+HPKA+PE + Sbjct 388 HSNTYQVDPALVGRRVELVFSPFDLQAIEVRDQDRSYGQAIAHTITRHAHPKARPEISSQ 447 Query 417 APPKPSGIDYAQLIETAHAAELARG--VNYTALTGAA------DQIPGQLDL 460 PP +GIDY L AH +L + Y AL GA +Q+PGQL L Sbjct 448 TPPAATGIDYLALTAAAHHEQLRDDERIGYHALYGAQATATDDNQLPGQLAL 499 >gi|315441535|ref|YP_004074412.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315444101|ref|YP_004076980.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315445643|ref|YP_004078522.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315446300|ref|YP_004079179.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315262404|gb|ADT99145.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315263946|gb|ADU00688.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315264603|gb|ADU01345.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] gi|315265190|gb|ADU01931.1| Mu transposase/integrase [Mycobacterium sp. Spyr1] Length=486 Score = 537 bits (1383), Expect = 2e-150, Method: Compositional matrix adjust. Identities = 292/472 (62%), Positives = 340/472 (73%), Gaps = 18/472 (3%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 E+ R ERA AIGLFRYQ+I A + ST+QRG++VRE+A R H DPFG +V+I+R T+ Sbjct 4 EDHKRRERANAIGLFRYQVICPALEEGLSTRQRGRVVREIAGRRHIDPFGTQVQIARATL 63 Query 67 DRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWA 126 DRWIR +R GGF+ALVP PR+ RT +VLELA +L+RENP RTAA + RILRT GWA Sbjct 64 DRWIRRYRGGGFEALVPEPRRLATRTDVQVLELAASLKRENPARTAAQVARILRTATGWA 123 Query 127 PDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFL 186 P E TL R+FHR L G G + VFGRFEA PN LW GD LHG R+ RKTYLFAFL Sbjct 124 PSESTLLRHFHRCELMGPAAGQSAEVFGRFEAPDPNELWVGDALHGPRVGDRKTYLFAFL 183 Query 187 DDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGV 246 DDHSRLV G+R+G AEDTVRLAAAL+PALA+RGVP ++YVDNGS +VDAWLLRACAKLG+ Sbjct 184 DDHSRLVVGHRFGFAEDTVRLAAALKPALAARGVPASIYVDNGSAFVDAWLLRACAKLGI 243 Query 247 RLVHSTPGRPQGRGKIERFFRTVREQFLVEITG----EPDVVGRHYVADLAELNRLFTAW 302 RLVHS PGRPQGRGKIERFFRTVREQFLVE+T + G + L ELNRLF AW Sbjct 244 RLVHSAPGRPQGRGKIERFFRTVREQFLVEVTDTTAEDLAAAGVDHAGALLELNRLFMAW 303 Query 303 VETVYHRSVHSETGQTPLARWSA-----GGPIPLPAPETLTEAFLWEEHRRVTKTATVSL 357 VET YHR +H+ETGQ+PLARW A G P LP LTEAFLW E R VTKTATVSL Sbjct 304 VETEYHRRIHTETGQSPLARWEAGFDRLGHPAALPTAADLTEAFLWSEFRIVTKTATVSL 363 Query 358 HGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPT- 416 H N Y++DPALVGR+VELVF PFDL IEVR +AI + I RH+HPKA+PE + Sbjct 364 HSNTYQVDPALVGRRVELVFSPFDLQAIEVRDQDRSYGQAIAHTITRHAHPKARPEISSQ 423 Query 417 APPKPSGIDYAQLIETAHAAELARG--VNYTALTGAA------DQIPGQLDL 460 PP +GIDY L AH +L + Y AL GA +Q+PGQL L Sbjct 424 TPPAATGIDYLALTAAAHHEQLRDDERIGYHALYGAQATATDDNQLPGQLAL 475 >gi|289762987|ref|ZP_06522365.1| transposase [Mycobacterium tuberculosis GM 1503] gi|289710493|gb|EFD74509.1| transposase [Mycobacterium tuberculosis GM 1503] Length=290 Score = 536 bits (1381), Expect = 3e-150, Method: Compositional matrix adjust. Identities = 265/266 (99%), Positives = 266/266 (100%), Gaps = 0/266 (0%) Query 1 VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 +AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR Sbjct 1 MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR Sbjct 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 Query 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT Sbjct 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 Query 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA Sbjct 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 Query 241 CAKLGVRLVHSTPGRPQGRGKIERFF 266 CAKLGVRLVHSTPGRPQGRGKIERFF Sbjct 241 CAKLGVRLVHSTPGRPQGRGKIERFF 266 >gi|31793988|ref|NP_856481.1| transposase [Mycobacterium bovis AF2122/97] gi|31619582|emb|CAD95021.1| PUTATIVE TRANSPOSASE [SECOND PART] [Mycobacterium bovis AF2122/97] Length=265 Score = 531 bits (1369), Expect = 6e-149, Method: Compositional matrix adjust. Identities = 263/265 (99%), Positives = 264/265 (99%), Gaps = 0/265 (0%) Query 205 VRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIER 264 +RLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIER Sbjct 1 MRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIER 60 Query 265 FFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWS 324 FFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWS Sbjct 61 FFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWS 120 Query 325 AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTR 384 AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTR Sbjct 121 AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTR 180 Query 385 IEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNY 444 IEVRLAGAPM RAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNY Sbjct 181 IEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGVNY 240 Query 445 TALTGAADQIPGQLDLLTGQEAQPK 469 TALTGAADQIPGQLDLLTGQEAQPK Sbjct 241 TALTGAADQIPGQLDLLTGQEAQPK 265 >gi|145226041|ref|YP_001136695.1| integrase catalytic subunit [Mycobacterium gilvum PYR-GCK] gi|145218504|gb|ABP47907.1| Integrase, catalytic region [Mycobacterium gilvum PYR-GCK] Length=522 Score = 528 bits (1359), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 290/476 (61%), Positives = 332/476 (70%), Gaps = 22/476 (4%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 E+ R ERA+AIGLFRYQLI A + STKQRGK+VRE+A R H DPFG +V+++R T+ Sbjct 31 EDHKRRERAQAIGLFRYQLICPALEQGLSTKQRGKLVREIADRRHIDPFGAQVQVARATL 90 Query 67 DRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWA 126 DRWIR +R GGF+ALVP PR+ RT +VLELAV+L+RENP RT A + RILRT GWA Sbjct 91 DRWIRRYRTGGFEALVPEPRRLGTRTDTQVLELAVSLKRENPARTVAQVARILRTATGWA 150 Query 127 PDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFL 186 P E TL R+FHR L G T G VFGRFEA PN LW GD LHG R+ RKTYLFAFL Sbjct 151 PSESTLLRHFHRCELMGPTAGQPGEVFGRFEAADPNELWVGDALHGPRVGDRKTYLFAFL 210 Query 187 DDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGV 246 DDHSRLV G+R+G AEDTVRLAAAL+PALA+RGVP ++YVDNGS +VDAWLLRACAKLG+ Sbjct 211 DDHSRLVVGHRFGFAEDTVRLAAALKPALAARGVPASIYVDNGSAFVDAWLLRACAKLGI 270 Query 247 RLVHSTPGRPQGRGKIERFFRTVREQFLVEITG----EPDVVGRHYVADLAELNRLFTAW 302 RLVHS PGRPQGRGKIERFFRTVR+QFLVE+T + G + L ELNRLF AW Sbjct 271 RLVHSAPGRPQGRGKIERFFRTVRDQFLVEVTDTSAEDLTAAGVDHRGALLELNRLFMAW 330 Query 303 VETVYHRSVHSETGQTPLARWS-----AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSL 357 ET YHR HSETGQ+PL RW GG LP LTEAFLW E R VTKTATVSL Sbjct 331 TETEYHRRTHSETGQSPLDRWEDGWDRLGGSPALPTAADLTEAFLWSEFRVVTKTATVSL 390 Query 358 HGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTA 417 H N Y +DPAL GR+VELVF PFDL IEVR A+ + I RH+HPKA+PET Sbjct 391 HSNTYRVDPALAGRRVELVFSPFDLESIEVRYRDQSFGAAVAHTITRHAHPKARPETRDD 450 Query 418 PPKPSGIDYAQLIETAHAAELARG--VNYTALTGA-----------ADQIPGQLDL 460 P +GIDY L AH +L + Y AL GA QIPGQL + Sbjct 451 PTPATGIDYLALTAAAHHEQLRHDERIGYHALYGADGQTTIGTAEQDGQIPGQLSI 506 >gi|120401589|ref|YP_951418.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1] gi|120402693|ref|YP_952522.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1] gi|120403490|ref|YP_953319.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1] gi|120403911|ref|YP_953740.1| integrase catalytic subunit [Mycobacterium vanbaalenii PYR-1] gi|119954407|gb|ABM11412.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1] gi|119955511|gb|ABM12516.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1] gi|119956308|gb|ABM13313.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1] gi|119956729|gb|ABM13734.1| Integrase, catalytic region [Mycobacterium vanbaalenii PYR-1] Length=499 Score = 526 bits (1356), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 291/475 (62%), Positives = 334/475 (71%), Gaps = 21/475 (4%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 EE R ERA AIGLFRYQLI A + ST+QRG++VRE+A R H DPFG +V+I+R T+ Sbjct 4 EEHKRRERANAIGLFRYQLICPALEDGLSTRQRGRLVREIAERRHIDPFGTQVQIARATL 63 Query 67 DRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWA 126 DRWIR +R GGF+ALVP PR+ RT +VLELA +L+RENP RT A + RILRT GWA Sbjct 64 DRWIRRYRGGGFEALVPEPRRLATRTDTQVLELAASLKRENPARTVAQVARILRTATGWA 123 Query 127 PDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFL 186 P E TL R+FHR L G G + VFGRFEA PN LW GD LHG R+ RKTYLFAFL Sbjct 124 PSESTLLRHFHRCELMGPAAGQSAEVFGRFEAADPNELWVGDALHGPRVGDRKTYLFAFL 183 Query 187 DDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGV 246 DDHSRLV G+R+G AEDTVRLAAAL+PALA+RGVP +YVDNGS +VDAWLLRACAKLG+ Sbjct 184 DDHSRLVVGHRFGFAEDTVRLAAALKPALAARGVPAGIYVDNGSAFVDAWLLRACAKLGI 243 Query 247 RLVHSTPGRPQGRGKIERFFRTVREQFLVEITG----EPDVVGRHYVADLAELNRLFTAW 302 RLVHS PGRPQGRGKIERFFRTVREQFLVE+T + G + L ELNRLF AW Sbjct 244 RLVHSAPGRPQGRGKIERFFRTVREQFLVEVTDTTAEDLTAAGVDHTGALLELNRLFMAW 303 Query 303 VETVYHRSVHSETGQTPLARWSAG----GPIP-LPAPETLTEAFLWEEHRRVTKTATVSL 357 VET YHR H+ETGQ+PLARW G G +P LP LTEAFLW E R VTKTATVSL Sbjct 304 VETEYHRRTHTETGQSPLARWETGWDRLGALPALPTAADLTEAFLWSEFRVVTKTATVSL 363 Query 358 HGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPET-PT 416 H N Y +DPAL GR+VELVF PFDL IEVR A+ + I RH+HPKA+PET Sbjct 364 HSNIYRVDPALAGRRVELVFSPFDLQAIEVRHQDRSYGPAVAHTITRHAHPKARPETRGE 423 Query 417 APPKPSGIDYAQLIETAHAAELARG--VNYTALTGAA---------DQIPGQLDL 460 APP +GIDY L H A+L + Y AL G DQ+ GQL + Sbjct 424 APPAATGIDYLALTAANHHAQLRDDERIGYHALYGTQAATDDTAGDDQVLGQLSI 478 >gi|258655052|ref|YP_003204208.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233] gi|258558277|gb|ACV81219.1| Integrase catalytic region [Nakamurella multipartita DSM 44233] Length=489 Score = 510 bits (1314), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 274/460 (60%), Positives = 320/460 (70%), Gaps = 15/460 (3%) Query 13 ERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRG 72 ERA+ I LFRYQLI A + STKQRG++VR +A R+H PFG RVR SR+++DRWIR Sbjct 10 ERAQQIALFRYQLICPALEPGLSTKQRGRIVRAIADRDHDGPFGGRVRYSRESLDRWIRR 69 Query 73 WRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTL 132 +R GGF+AL P+PRQ R A+V ELA AL+RENP RT A + RILR GW+P E TL Sbjct 70 YRGGGFEALSPSPRQPGARIDAQVFELAAALKRENPDRTVAQVARILRASTGWSPSETTL 129 Query 133 QRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRL 192 R+FHRL L G+ PAVFGRFEA N W GD LHG R+ RKTYLFAFLDDHSRL Sbjct 130 LRHFHRLDLM-VPGGAGPAVFGRFEAPDCNERWVGDALHGPRVAGRKTYLFAFLDDHSRL 188 Query 193 VPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHST 252 GYR+G AEDTVRLAAAL+PAL SRGVP +VYVDNGS +VD WLLRACA LG+RLVHS Sbjct 189 AVGYRFGFAEDTVRLAAALQPALGSRGVPGSVYVDNGSAFVDNWLLRACAVLGIRLVHSR 248 Query 253 PGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVAD----LAELNRLFTAWVETVYH 308 PG+PQGRGKIER+FR+VR+QFLVEI R + L ELN FTAWVE YH Sbjct 249 PGQPQGRGKIERWFRSVRDQFLVEIEDSTAEKVRDAIMTPAQALLELNGSFTAWVEASYH 308 Query 309 RSVHSETGQTPLARWS-----AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYE 363 VHSETGQTPL RW+ AG +P P LTEAFLW E R VTKTATVSLHGN Y+ Sbjct 309 HRVHSETGQTPLQRWNDGWQRAGRSPAMPTPADLTEAFLWSEQRVVTKTATVSLHGNTYQ 368 Query 364 IDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKP-S 422 +D L GRKVELVF PFDL I VR G A+P+ I RH+HPKA+PETP P + Sbjct 369 VDQVLAGRKVELVFSPFDLETIRVRYDGRDHGPAVPHRIHRHTHPKARPETPEPATTPRT 428 Query 423 GIDYAQLIETAHAAELA--RGVNYTALTGAADQIPGQLDL 460 GIDY L+ H ++ + +NY AL ++PGQL + Sbjct 429 GIDYLALVAQDHQQQITTDQKINYHALYPG--ELPGQLSI 466 >gi|336117533|ref|YP_004572301.1| putative transposase [Microlunatus phosphovorus NM-1] gi|334685313|dbj|BAK34898.1| putative transposase [Microlunatus phosphovorus NM-1] Length=471 Score = 503 bits (1295), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 278/454 (62%), Positives = 324/454 (72%), Gaps = 12/454 (2%) Query 5 DDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQ 64 + ++ R ERA+ + L+RYQLI A D STK RG++VR +A+R H PFG + SR Sbjct 5 EQDDVKRRERAQQVALWRYQLICPALDPELSTKARGRIVRTIAARTHAGPFGGQHSYSRD 64 Query 65 TIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLG 124 ++DRWIR +RAGGFDAL P+ RQ R VLELAVAL+RENP RTAA + RILR G Sbjct 65 SLDRWIRRYRAGGFDALAPSLRQPGSRIDTTVLELAVALKRENPDRTAAQVARILRASGG 124 Query 125 WAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFA 184 ++P E TL R FHR L G TG A FGRFEA+ PN W GD LHG RI RK+YLFA Sbjct 125 YSPSESTLLRLFHRRELMGPATGQQ-AAFGRFEADAPNQRWVGDALHGPRIGGRKSYLFA 183 Query 185 FLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKL 244 FLDDHSRLV GYR+G AED VRLAAA PALA+RGVP + YVDNGS YVDAWLLRACAKL Sbjct 184 FLDDHSRLVTGYRFGFAEDVVRLAAAFEPALAARGVPGSCYVDNGSAYVDAWLLRACAKL 243 Query 245 GVRLVHSTPGRPQGRGKIERFFRTVREQFLVEI--TGEPDVVGRHYVADLAELNRLFTAW 302 G+RLVHSTP RPQGRGKIERFFRTVREQFLVE+ T D+ R L ELN LFTAW Sbjct 244 GIRLVHSTPHRPQGRGKIERFFRTVREQFLVEVADTTAADLTDRSPATALLELNALFTAW 303 Query 303 VETVYHRSVHSETGQTPLARWS-----AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSL 357 VE+VYH VHSETGQTPL RW+ AG +P+ + LTEAFLW ++R VTKTATVSL Sbjct 304 VESVYHHQVHSETGQTPLNRWNDGWQAAGHNPAMPSADALTEAFLWSQYRTVTKTATVSL 363 Query 358 HGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPET--P 415 H N Y+++PALVGRKVELVF PF+L IEVR G AIP+ I RH+HPKA+PET P Sbjct 364 HSNTYQVEPALVGRKVELVFSPFNLEAIEVRHGGRSYGPAIPHVITRHAHPKARPETPEP 423 Query 416 TAPPKPSGIDYAQLIETAHAAELARG--VNYTAL 447 P +GI Y QL+ AH A++A + Y AL Sbjct 424 AEAPTTTGIAYLQLVADAHHAQVAADERIGYQAL 457 >gi|258651521|ref|YP_003200677.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233] gi|258654632|ref|YP_003203788.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233] gi|258554746|gb|ACV77688.1| Integrase catalytic region [Nakamurella multipartita DSM 44233] gi|258557857|gb|ACV80799.1| Integrase catalytic region [Nakamurella multipartita DSM 44233] Length=493 Score = 503 bits (1295), Expect = 3e-140, Method: Compositional matrix adjust. Identities = 269/457 (59%), Positives = 319/457 (70%), Gaps = 15/457 (3%) Query 13 ERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRG 72 ERA+ I LFRYQLI A + STKQRG++VR +A REH PFG RVR SR+++DRWIR Sbjct 10 ERAQQIALFRYQLICPALEPGLSTKQRGRVVRAIADREHDGPFGGRVRYSRESLDRWIRR 69 Query 73 WRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTL 132 +RAGGF+ L P+PR+ R V ELA L+RENP RT A + RILR+ GW+P E TL Sbjct 70 YRAGGFEGLCPSPREPGTRIDTGVFELAAGLKRENPARTVAQVARILRSSTGWSPSETTL 129 Query 133 QRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRL 192 R+FHRL L G+ PAVFGRFEA N W GD LHG R+ RKTYLFAFLDDHSR+ Sbjct 130 LRHFHRLDLM-VPGGAGPAVFGRFEAADCNERWVGDALHGPRVAGRKTYLFAFLDDHSRV 188 Query 193 VPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHST 252 GYR+G AEDTVRLAAAL+PAL SRGVP +VYVDNGS +VD WLLRACA LG+RLVHS Sbjct 189 AVGYRFGFAEDTVRLAAALQPALGSRGVPGSVYVDNGSAFVDNWLLRACAVLGIRLVHSR 248 Query 253 PGRPQGRGKIERFFRTVREQFLVEITGE-PDVV---GRHYVADLAELNRLFTAWVETVYH 308 PG+PQGRGKIER+FR+VR+QFLVEI D + G L ELN LFTAWVE YH Sbjct 249 PGQPQGRGKIERWFRSVRDQFLVEIDDSTADQIRDTGMTPAGALLELNGLFTAWVEASYH 308 Query 309 RSVHSETGQTPLARWS-----AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYE 363 VHSETGQ+PL RW+ AG +P P LTEAFLW E R VT+TATVSLHGN Y+ Sbjct 309 HHVHSETGQSPLQRWTDGWQRAGRSPAMPTPADLTEAFLWSEQRVVTRTATVSLHGNTYQ 368 Query 364 IDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKP-S 422 + LVGRKVELVF PFDL + VR G A+P+ I RH+HPKA+PETP P + Sbjct 369 VQAGLVGRKVELVFSPFDLETLRVRYDGRDHGPAVPHRITRHTHPKARPETPEPATTPRT 428 Query 423 GIDYAQLIETAHAAELA--RGVNYTALTGAADQIPGQ 457 GIDY L+ H +++ + +NY AL ++PGQ Sbjct 429 GIDYLALVAQDHQQQISADQKINYHALY--PGELPGQ 463 >gi|258653876|ref|YP_003203032.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233] gi|258557101|gb|ACV80043.1| Integrase catalytic region [Nakamurella multipartita DSM 44233] Length=495 Score = 499 bits (1286), Expect = 3e-139, Method: Compositional matrix adjust. Identities = 269/460 (59%), Positives = 320/460 (70%), Gaps = 16/460 (3%) Query 13 ERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRG 72 ERA+ I LFRYQLI A + STKQRG++VR +A REH PFG RVR SR+++DRWIR Sbjct 10 ERAQQIALFRYQLICPALEPGLSTKQRGRVVRAIADREHDGPFGGRVRYSRESLDRWIRR 69 Query 73 WRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTL 132 +RAGGF+ L P+PR+ R V ELA L+RENP RT A + RILR+ GW+P E TL Sbjct 70 YRAGGFEGLCPSPREPGTRIDTGVFELAAGLKRENPARTVAQVARILRSSTGWSPSETTL 129 Query 133 QRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRL 192 R+FHRL L G+ PAVFGRFEA N W GD LHG R+ RKTYLFAFLDDHSR+ Sbjct 130 LRHFHRLDLM-VPGGAGPAVFGRFEAADCNERWVGDALHGPRVAGRKTYLFAFLDDHSRV 188 Query 193 VPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHST 252 GYR+G AEDTVRLAAAL+PAL SRGVP +VYVDNGS +VD WLLRACA LG+RLVHS Sbjct 189 AVGYRFGFAEDTVRLAAALQPALGSRGVPGSVYVDNGSAFVDNWLLRACAVLGIRLVHSR 248 Query 253 PGRPQGRGKIERFFRTVREQFLVEITGE-PDVV---GRHYVADLAELNRLFTAWVETVYH 308 PG+PQGRGKIER+FR+VR+QFLVEI D + G L ELN LFTAWVE YH Sbjct 249 PGQPQGRGKIERWFRSVRDQFLVEIDDSTADQIRDTGMTPAGALLELNGLFTAWVEASYH 308 Query 309 RSVHSETGQTPLARWS-----AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYE 363 VHSETGQ+PL RW+ AG +P P LTEAFLW E R VT+TATVSLHGN Y+ Sbjct 309 H-VHSETGQSPLQRWTDGWQRAGRSPAMPTPADLTEAFLWSEQRVVTRTATVSLHGNTYQ 367 Query 364 IDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKP-S 422 + LVGRKVELVF PFDL + VR G A+P+ I RH+HPKA+PETP P + Sbjct 368 VQAGLVGRKVELVFSPFDLETLRVRYDGRDHGPAVPHRITRHTHPKARPETPEPATTPRT 427 Query 423 GIDYAQLIETAHAAELA--RGVNYTALTGAADQIPGQLDL 460 GIDY L+ H +++ + +NY L ++PGQL + Sbjct 428 GIDYLALVAQDHQQQISADQKINYHTLY--PGELPGQLSI 465 >gi|326904428|gb|EGE51361.1| hypothetical protein TBPG_02330 [Mycobacterium tuberculosis W-148] Length=237 Score = 477 bits (1228), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 235/237 (99%), Positives = 236/237 (99%), Gaps = 0/237 (0%) Query 233 VDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADL 292 +DAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADL Sbjct 1 MDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADL 60 Query 293 AELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKT 352 AELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKT Sbjct 61 AELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKT 120 Query 353 ATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKP 412 ATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPM RAIPYHIGRHSHPKAKP Sbjct 121 ATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMGRAIPYHIGRHSHPKAKP 180 Query 413 ETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 469 ETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK Sbjct 181 ETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK 237 >gi|31793987|ref|NP_856480.1| transposase [Mycobacterium bovis AF2122/97] gi|31619581|emb|CAD95020.1| PUTATIVE TRANSPOSASE [FIRST PART] [Mycobacterium bovis AF2122/97] Length=226 Score = 398 bits (1022), Expect = 1e-108, Method: Compositional matrix adjust. Identities = 206/224 (92%), Positives = 207/224 (93%), Gaps = 4/224 (1%) Query 1 VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 +AVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR Sbjct 1 MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVR 60 Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR Sbjct 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILR 120 Query 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT Sbjct 121 TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKT 180 Query 181 YLFAFLDDHSRLVPGYRW---GHAEDTVRLA-AALRPALASRGV 220 YLFAFLDDHSRLVPGYR GH R A A P A RGV Sbjct 181 YLFAFLDDHSRLVPGYRGPCRGHGAAGRRTAPGAGLPRRAQRGV 224 >gi|51893403|ref|YP_076094.1| transposase [Symbiobacterium thermophilum IAM 14863] gi|51857092|dbj|BAD41250.1| transposase [Symbiobacterium thermophilum IAM 14863] Length=469 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 174/459 (38%), Positives = 238/459 (52%), Gaps = 25/459 (5%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 I FR+QLI + +R ++++++A + H P + R+S T++RWI +R G Sbjct 16 IAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVCTLERWIAAYRQAG 75 Query 78 FDALVPNPRQCTPR----TPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAP----DE 129 FD L P R + TP E+LE A+A RRE P+R+ I L + G P Sbjct 76 FDGLKPKVRDDARKGRVITP-EILEHAIAARREVPERSVQQIIDTL-EKAGVVPPGLLRR 133 Query 130 RTLQRNFHRLGLTGATTGSAP--AVFGRFEAEHPNALWTGDVLHGIRI-------DLRKT 180 TL ++ R G + S A F RFEA H N W GDV H + + RK Sbjct 134 STLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHRNDCWQGDVCHLLNLPHPDRPDKTRKV 193 Query 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 YL AF+DD+SR+V G + E RL L+ + G+P +YVDNG+ Y L R Sbjct 194 YLIAFIDDYSRIVYGQMYWE-EKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSARHLARI 252 Query 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 C +LG+RL HS P RPQGRGKIERFF TV++ FL E ++ +A L +LN LF Sbjct 253 CGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQ---QLIAAGQLATLEQLNELFW 309 Query 301 AWVETVYHRSVHSETGQTPLARW-SAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHG 359 AW+E YH VH T QTP R+ S P+ P L E FLWEE R V +T SL+ Sbjct 310 AWLEVAYHNRVHGVTKQTPRQRFESDTEPLRRIDPSALREVFLWEEERVVDQTGCFSLYR 369 Query 360 NRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPK-AKPETPTAP 418 N+YE+DPAL RKV L +DP+DL++I+V G A+P + R H + P Sbjct 370 NQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADAVPLKLHRTRHRSVSPAPEPATA 429 Query 419 PKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQ 457 +G+++ L + H E R + TA T GQ Sbjct 430 APKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQ 468 >gi|51893858|ref|YP_076549.1| transposase [Symbiobacterium thermophilum IAM 14863] gi|51857547|dbj|BAD41705.1| transposase [Symbiobacterium thermophilum IAM 14863] Length=462 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 174/459 (38%), Positives = 239/459 (53%), Gaps = 25/459 (5%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 I FR+QLI + +R ++++++A + H P + R+S +T++RWI +R G Sbjct 9 IAAFRWQLIAPVVAEDVTRLERRRILQQIARQHHQIPHSDKTRVSVRTLERWIAAYRQAG 68 Query 78 FDALVPNPRQCTPR----TPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAP----DE 129 FD L P R + TP E+LE A+A RRE P+R+ I L + G P Sbjct 69 FDGLKPKVRDDARKGRVITP-EILEHAIAARREVPERSVQQIIDTL-EKAGVVPPGLLRR 126 Query 130 RTLQRNFHRLGLTGATTGSAP--AVFGRFEAEHPNALWTGDVLHGIRI-------DLRKT 180 TL ++ R G + S A F RFEA H N W GDV H + + RK Sbjct 127 STLSQHLVRAGYSRKAMLSRKRRATFRRFEAAHRNDCWQGDVCHLLNLPHPDRPGKTRKV 186 Query 181 YLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRA 240 YL AF+DD+SR+V G + E RL L+ + G+P +YVDNG+ Y L R Sbjct 187 YLIAFIDDYSRIVYGQMYWE-EKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSARHLARI 245 Query 241 CAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFT 300 C +LG+RL HS P RPQGRGKIERFF TV++ FL E ++ +A L +LN LF Sbjct 246 CGRLGIRLTHSRPYRPQGRGKIERFFLTVQKSFLPEAQ---QLIAAGQLATLEQLNELFW 302 Query 301 AWVETVYHRSVHSETGQTPLARWSAGG-PIPLPAPETLTEAFLWEEHRRVTKTATVSLHG 359 AW+E YH VH T QTP R+ P+ P L E FLWEE R V +T SL+ Sbjct 303 AWLEVAYHNRVHGVTKQTPRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSLYR 362 Query 360 NRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPK-AKPETPTAP 418 N+YE+DPAL RKV L +DP+DL++I+V G A+P + R H + P A Sbjct 363 NQYEVDPALARRKVTLRYDPYDLSQIQVWHEGKRFADAVPLKLHRTRHRSVSPAPEPAAA 422 Query 419 PKPSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQ 457 +G+++ L + H E R + TA T GQ Sbjct 423 APKTGLNFLTLAKKQHDTERRRRLGETAYTRLTQPKGGQ 461 >gi|302556465|ref|ZP_07308807.1| transposase [Streptomyces viridochromogenes DSM 40736] gi|302474083|gb|EFL37176.1| transposase [Streptomyces viridochromogenes DSM 40736] Length=216 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 130/213 (62%), Positives = 150/213 (71%), Gaps = 5/213 (2%) Query 249 VHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYH 308 +HS PGRP+GRGKIERFFRTV +F VEI + VGR + DLAE+NRLF AWVE +YH Sbjct 1 MHSAPGRPEGRGKIERFFRTVNGEFTVEIASDKGEVGRE-IKDLAEMNRLFIAWVENIYH 59 Query 309 RSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPAL 368 R VHSET Q PL RW AG P P+P P L EAF W EHRRV KTATVSLHGNRY+++P L Sbjct 60 RRVHSETKQEPLQRWMAGAPFPVPQPADLAEAFRWSEHRRVAKTATVSLHGNRYQVEPEL 119 Query 369 VGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK-PSGIDYA 427 VG KVELVFDPFDLT + VRL G A P+ I RHSHPKA+PE P PK +GIDY Sbjct 120 VGHKVELVFDPFDLTFLRVRLDGQDAGTATPFQIERHSHPKARPEVPAEEPKVTTGIDYL 179 Query 428 QLIETAHAAELARGVNYTALTGAADQIPGQLDL 460 L++ AH+ L +NY AL AD G +DL Sbjct 180 HLVDNAHSNHLGTKINYAAL---ADPPAGAVDL 209 >gi|323702274|ref|ZP_08113940.1| Integrase catalytic region [Desulfotomaculum nigrificans DSM 574] gi|323532764|gb|EGB22637.1| Integrase catalytic region [Desulfotomaculum nigrificans DSM 574] Length=462 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 156/453 (35%), Positives = 228/453 (51%), Gaps = 23/453 (5%) Query 13 ERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRG 72 E+ AI FRY LI ++ ++++++++E+ DP G VR +T++R+++ Sbjct 4 EKRLAIANFRYGLIAPIVCRKLEKGEQAALLKDISAKEYIDPDGHIVRPGLRTLERYLQA 63 Query 73 WRAGGFDALVPNPRQ--CTPRT-PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAP-- 127 +R GF+ L P R+ TPR P +LE A+ L++E P R+ I RIL P Sbjct 64 YRTHGFEGLKPQSRKDNSTPRVIPQHILEKAIELKKELPSRSVEQIIRILELSQIAPPGV 123 Query 128 -DERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRID-------LRK 179 TL R + S P+ F RF N W GD + + + Sbjct 124 LKRTTLGRYLKEIS---RQIKSEPSSFRRFSYSKRNQCWQGDTHATLYLPHPTESGRKKA 180 Query 180 TYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLR 239 L AF+DD SR + + E RL L+ A+ GVP +YVDNGS Y + L R Sbjct 181 VRLVAFIDDFSRYITHAEYYWDEKLPRLEDCLKKAILRCGVPEKLYVDNGSVYRASHLAR 240 Query 240 ACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLF 299 C +LG+ LVHS P +PQGRGKIE FFR + F E +V + + L +LN F Sbjct 241 ICGELGIHLVHSRPYKPQGRGKIEGFFRYLDRSFRPEAQA---LVEQGKLITLDDLNNFF 297 Query 300 TAWVETVYHRSVHSETGQTPLARWS-AGGPIPLPAPETLTEAFLWEEHRRVTKTATVSLH 358 AW++ Y + HS T P+ R++ PI L E FLW+E R V K SL Sbjct 298 WAWLDLAYQKKKHSSTSVKPVNRFNNCTHPIRKVDIAVLNEIFLWQEQRIVDKACCFSLE 357 Query 359 GNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAP 418 GN YE++P L G+KV L FDP+DL+ I+V G A P + + HPK + T Sbjct 358 GNTYEVEPILAGKKVTLKFDPYDLSVIQVWFEGKRYLDAKPLDLSKPRHPKVPLDQLTEV 417 Query 419 PKPSGIDYAQLIETAHAAELAR---GVNYTALT 448 P SG++Y +L++ ++ ELA+ G+ Y L+ Sbjct 418 PPSSGLNYLELLKKSYDEELAKTLGGLTYANLS 450 >gi|296132015|ref|YP_003639262.1| Integrase catalytic region [Thermincola sp. JR] gi|296132091|ref|YP_003639338.1| Integrase catalytic region [Thermincola sp. JR] gi|296132985|ref|YP_003640232.1| Integrase catalytic region [Thermincola sp. JR] 11 more sequence titles Length=464 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 157/458 (35%), Positives = 226/458 (50%), Gaps = 26/458 (5%) Query 6 DEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQT 65 DEEK R E I FRY LI ++ +++ E+A+RE+ DP G+ R +T Sbjct 2 DEEK-RLE----IANFRYGLIAPVVCRRLEKGEQARLLAEIAAREYNDPHGKTFRPGLRT 56 Query 66 IDRWIRGWRAGGFDALVPNPRQ--CTPR-TPAEVLELAVALRRENPQRTAAAIRRILRTQ 122 ++R++ +R G + L P R+ TPR P E+L AV L++E P R+ I RIL Sbjct 57 LERYLAAYRKQGLEGLKPKVREDKSTPRAVPDELLAKAVELKKELPTRSVDQIIRILELS 116 Query 123 LGWAP---DERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRI---- 175 P TL R L + P+ RF N W GD + + Sbjct 117 QLVEPGILKRTTLSRY---LKEVAREIKAEPSAHRRFSYSKRNQCWQGDTHATLYLPHPT 173 Query 176 ---DLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPY 232 + L AF+DD+SR + + E RL L+ A+ GVP +YVDNGS Y Sbjct 174 EPGRKKSVRLVAFIDDYSRYITHAEYYFDEKLPRLEDCLKKAILRCGVPEKLYVDNGSVY 233 Query 233 VDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADL 292 L R C +LG+ L+HS P +PQGRGKIE FFR + + F E ++ + + L Sbjct 234 RSQHLARICGELGIHLIHSRPYKPQGRGKIEGFFRYLDKSFRPEAQA---LIEQGKLTTL 290 Query 293 AELNRLFTAWVETVYHRSVHSETGQTPLARW-SAGGPIPLPAPETLTEAFLWEEHRRVTK 351 +LN F AW+E Y + HS T P+ R+ + + L + FLW+E R V K Sbjct 291 EDLNNFFWAWLEMAYQQKKHSSTAVKPVNRFNNCTHSLRRVDIAILNQIFLWQEERSVDK 350 Query 352 TATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKA- 410 T SL GN YE+DP L G++V + +DPFDLTRI+V G A + + HPK Sbjct 351 TCCFSLEGNTYEVDPVLAGKRVVVKYDPFDLTRIQVWFNGEQYANAKLLDLSKPHHPKVP 410 Query 411 KPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALT 448 K + P SG++Y +L++ A+ LA+ + A T Sbjct 411 KEDCLVNTPPTSGLNYLELLKKAYDENLAKTLGDLAYT 448 >gi|339628323|ref|YP_004719966.1| transposase [Sulfobacillus acidophilus TPY] gi|339286112|gb|AEJ40223.1| transposase [Sulfobacillus acidophilus TPY] Length=472 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 148/430 (35%), Positives = 213/430 (50%), Gaps = 22/430 (5%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 I FRY +I S ++ +++ L + P G V +S +TI RW+ +RAGG Sbjct 11 IAAFRYHVIAPLVSRPLSYGEQRALIQTLCQQIWQAPDGEPVTLSPRTIYRWLAAYRAGG 70 Query 78 FDALVPNPRQ---CTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE---RT 131 + AL P PR E+L LA+ LR ENP R+ I R++ P T Sbjct 71 WAALAPAPRADVGTMRHLDPEILALAIQLRDENPTRSVQQIIRVMELAHRIEPGSVKYST 130 Query 132 LQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRID-------LRKTYLFA 184 L +F R G+ V R +A + NA W GD + +R+ ++ YLFA Sbjct 131 LTYHFRRRGVLAKQAPDPEHVLRRRQAPYANAEWQGDTQYTVRLPDPARPGRTKQAYLFA 190 Query 185 FLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKL 244 F+DD+SR + G ++ E+ RL L+ A+ GVP ++ DNG+ Y +L R C +L Sbjct 191 FIDDYSRFIVGAQFFFEENRPRLEEVLKWAIVRHGVPEILHCDNGAVYSSHYLQRVCGEL 250 Query 245 GVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVE 304 + L H P P G+GKIER+FR V +QF E+ ++ V L +LN L AW+ Sbjct 251 AIDLRHGRPRHPSGKGKIERWFRRVDQQFTGEVE---TLIADGRVQTLEQLNALLEAWLA 307 Query 305 TVYHRSVH-SETGQTPLARWSAG---GPIPLPAPETLTEAFLWEEHRRVTKTATVSLHGN 360 YH + H S G TP W+A P ETL FLW++ RRV KT + L GN Sbjct 308 VGYHDAPHKSLAGATPRQVWTASRQDHPPRTQPVETLRRIFLWQDTRRVDKTGVIQLAGN 367 Query 361 RYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKA-KPETPTAPP 419 RYE+D L + + + +DP+DLT I G A P + H H + PE+P A P Sbjct 368 RYEVDARLARKTITVRYDPYDLTVIHCEYQGQVYPDATPLVLHHHRHREVPNPESPPAAP 427 Query 420 KPSGIDYAQL 429 +G++Y L Sbjct 428 A-TGLNYLTL 436 >gi|51891192|ref|YP_073883.1| putative transposase [Symbiobacterium thermophilum IAM 14863] gi|51854881|dbj|BAD39039.1| putative transposase [Symbiobacterium thermophilum IAM 14863] Length=323 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/326 (41%), Positives = 173/326 (54%), Gaps = 13/326 (3%) Query 141 LTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRI-------DLRKTYLFAFLDDHSRLV 193 +TG + A F RFEA H N W GDV H + + RK YL AF+DD+SR+V Sbjct 1 MTGIRSRKRRATFRRFEAAHRNDCWQGDVCHLLNLPHPDRPGKTRKVYLIAFIDDYSRIV 60 Query 194 PGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTP 253 G + E RL L+ + G+P +YVDNG+ Y L R C +LG+RL HS P Sbjct 61 YGQMYWE-EKLPRLEDCLKRTILRYGLPRRIYVDNGAIYSARHLARICGRLGIRLTHSRP 119 Query 254 GRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHS 313 RPQGRGKIERFF TV++ FL E ++ +A L +LN LF AW+E YH VH Sbjct 120 YRPQGRGKIERFFLTVQKSFLPEAQ---QLIAAGQLATLEQLNELFWAWLEVAYHNRVHG 176 Query 314 ETGQTPLARWSAGG-PIPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRK 372 T QTP R+ P+ P L E FLWEE R V +T SL+ N+YE+DPAL RK Sbjct 177 VTKQTPRQRFEGDTEPLRRIDPSALREVFLWEEERVVDQTGCFSLYRNQYEVDPALARRK 236 Query 373 VELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPK-AKPETPTAPPKPSGIDYAQLIE 431 V L +DP+DL++I+V G A+P + R H + P +G+++ L + Sbjct 237 VTLRYDPYDLSQIQVWHEGKRFADAVPLKLHRTRHRSVSPAPEPATAAPKTGLNFLTLAK 296 Query 432 TAHAAELARGVNYTALTGAADQIPGQ 457 H E R + TA T GQ Sbjct 297 KQHDTERRRRLGETAYTRLTQPKGGQ 322 >gi|301057267|ref|ZP_07198393.1| integrase core domain protein [delta proteobacterium NaphS2] gi|301057722|ref|ZP_07198795.1| integrase core domain protein [delta proteobacterium NaphS2] gi|301057786|ref|ZP_07198855.1| integrase core domain protein [delta proteobacterium NaphS2] 23 more sequence titles Length=452 Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/377 (37%), Positives = 207/377 (55%), Gaps = 24/377 (6%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 + LFRY +I + ++ +R+ A +E+ P RR R++ +TI W++ +R GG Sbjct 10 VALFRYGIIADFVHLPPGSRGLYAQIRKKAGQEYVIPGSRRTRVAEETIRSWLKKYRKGG 69 Query 78 FDALVPNPRQC---TPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE----- 129 FDAL+P R T + P E+ +L + + + P+ T + + +R G PD+ Sbjct 70 FDALLPKERTDKGETRKLPLEISDLLLEAKEKEPELTVPLLIKKVRAS-GNIPDDVRMPR 128 Query 130 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHG--IRID---LRKTYLFA 184 T+ + R GLT T S RF + L+ DV++G +R + RKTYL A Sbjct 129 STVYKLLARHGLTRKIT-SPDRDHRRFAYLNAGDLFMSDVMYGPAVRKNDGRKRKTYLIA 187 Query 185 FLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKL 244 F+DD +R++P + H+E+T L+ A+ RG+P ++VDNGS + L CAKL Sbjct 188 FIDDATRVIPYAAFAHSENTAAFMEVLKQAVLRRGIPMRLFVDNGSAFRSQHLSLVCAKL 247 Query 245 GVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVE 304 G+ L+H+ P +GKIER+FRTVR QFL P + +H + +L +NR ++E Sbjct 248 GITLIHARPYHAAAKGKIERWFRTVRLQFL------PMLSEKHML-NLKAINRALWTYIE 300 Query 305 TVYHRSVHSETGQTPLARWS-AGGPIPLPAP-ETLTEAFLWEEHRRVTKTATVSLHGNRY 362 T YHRS H +TPL RW+ G + P P + L + FL+E R+V K TVSL+G Y Sbjct 301 TEYHRSPHRSLCETPLDRWARVGEKVRYPEPGDDLDDLFLFESKRKVQKDRTVSLNGMAY 360 Query 363 EIDPALVGRKVELVFDP 379 EID +LVG V L ++P Sbjct 361 EIDASLVGETVTLRYNP 377 >gi|301057918|ref|ZP_07198980.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300448005|gb|EFK11708.1| integrase core domain protein [delta proteobacterium NaphS2] Length=452 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/382 (36%), Positives = 207/382 (55%), Gaps = 24/382 (6%) Query 13 ERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRG 72 E + LFRY +I + ++ +R+ A +E+ P RR R++ +TI W++ Sbjct 5 ELQEQVALFRYGIIADFVHLPPGSRGLYAQIRKKAGQEYVIPGSRRTRVAEETIRSWLKK 64 Query 73 WRAGGFDALVPNPRQC---TPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE 129 +R GGFDAL+P R T + P E+ +L + + + P+ T + + +R G PD+ Sbjct 65 YRKGGFDALLPKERTDKGETRKLPLEISDLLLEAKEKEPELTVPLLIKKVRAS-GNIPDD 123 Query 130 -----RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHG--IRID---LRK 179 T+ + R GLT T S RF + L+ DV++G +R + RK Sbjct 124 VRMPRSTVYKLLARHGLTRKIT-SPDRDHRRFAYLNAGDLFMSDVMYGPAVRKNDGRKRK 182 Query 180 TYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLR 239 TYL F+DD +R++P + H+E+T L+ A+ RG+P ++VDNGS + L Sbjct 183 TYLITFIDDATRVIPYAAFAHSENTAAFMEVLKQAVLRRGIPMRLFVDNGSAFRSQHLSL 242 Query 240 ACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLF 299 CAKLG+ L+H+ P +GKIER+FRTVR QFL P + +H + +L +NR Sbjct 243 VCAKLGITLIHARPYHAAAKGKIERWFRTVRLQFL------PMLSEKHML-NLKAINRAL 295 Query 300 TAWVETVYHRSVHSETGQTPLARWS-AGGPIPLPAP-ETLTEAFLWEEHRRVTKTATVSL 357 ++ET YHRS H +TPL RW+ G + P P + L + FL+E R+V K TVSL Sbjct 296 WTYIETEYHRSPHRSLCETPLDRWARVGEKVRYPEPGDDLDDLFLFESKRKVQKDRTVSL 355 Query 358 HGNRYEIDPALVGRKVELVFDP 379 +G YEID +LVG V L ++P Sbjct 356 NGMAYEIDASLVGETVTLRYNP 377 >gi|121533422|ref|ZP_01665250.1| Integrase, catalytic region [Thermosinus carboxydivorans Nor1] gi|121307981|gb|EAX48895.1| Integrase, catalytic region [Thermosinus carboxydivorans Nor1] Length=448 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 150/416 (37%), Positives = 204/416 (50%), Gaps = 33/416 (7%) Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPR---TPAEVLELAVALRRENPQRTAAAIRR 117 IS +T+ R++ +R GF L+P R + P +V + A L+ E P+R+ + Sbjct 44 ISDRTLRRYLAAYRKQGFAGLLPQTRSDKGKRRKIPDDVFKHAAKLKEELPERSTLRVLD 103 Query 118 ILRTQLGWAPDE---RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIR 174 IL + P E TL R+ RLGLT S RF+ EH N LW D+ +G Sbjct 104 ILVGEKTIKPGEIARSTLARHLARLGLTRRAKSSGTGS-RRFQKEHRNKLWQADIKYGPY 162 Query 175 I-------DLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVD 227 I +TYL AF+DD SRL+ ++ + L R A+ RG+P VY+D Sbjct 163 IVHPQNPQKKLRTYLVAFIDDASRLICHGQFYLEQKLAVLEDCFRKAILKRGIPEGVYID 222 Query 228 NGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEIT-GEPDVVGR 286 NG ++ W A AKLG+R + + P P+ +GKIERF RTV E+FL E++ +P Sbjct 223 NGKIFISRWFRLASAKLGIRHITAAPYSPEAKGKIERFNRTV-EEFLAEVSLSQPKT--- 278 Query 287 HYVADLAELNRLFTAWVETVYHRSVHSE-TGQTPLARWSAG-GPIPLPAPETLTEAFLWE 344 L ELN+ F AWVE Y+ HS GQTP R+ + PI E EAFLWE Sbjct 279 -----LEELNKAFAAWVEEGYNHRPHSALDGQTPAERFQSDVNPIRFATLEECREAFLWE 333 Query 345 EHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGR 404 E RRV KT + L G YE L+G+ V++ +DPFDL IE+ G A I Sbjct 334 ETRRVDKTGCLKLCGKIYEAGIDLIGKTVDVRYDPFDLAEIEIWHNGRKHCLARELIISE 393 Query 405 HSHPKAKPETP----TAPPKPSGIDYAQLIETAHAAELAR--GVNYTALTGAADQI 454 S K K + TA KPS + A L + A A R + Y L G D + Sbjct 394 TSSAKPKEDAGQPDRTASAKPSRL-LAVLEQKAIARRKMRLGAIAYRQLGGGDDSV 448 >gi|339629400|ref|YP_004721043.1| transposase [Sulfobacillus acidophilus TPY] gi|339287189|gb|AEJ41300.1| transposase [Sulfobacillus acidophilus TPY] Length=460 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 157/453 (35%), Positives = 219/453 (49%), Gaps = 38/453 (8%) Query 17 AIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAG 76 A LFRY+LI D A S R L T P G+ S ++I R+ +RAG Sbjct 12 AWALFRYRLISPLLDPAVSAADRAAYWAFLRDHPPTTPDGQVWVPSSRSIQRYCAAYRAG 71 Query 77 GFDALVPNPRQ--CTPRTPAEVLEL-AVALRRENPQRTAAAIRRILRTQLGWAPD----- 128 G DAL P R+ T R ++ L + AVAL+RE P+R+A + +LR WAP Sbjct 72 GLDALRPQRRRDHGTRRAFSDPLWVQAVALKREVPERSADQVMALLR---AWAPTAGLDA 128 Query 129 -------ERTLQRNFHRLGLTGATT-GSAPAVFGRFEAEHPNALWTGDVLHGIRID---- 176 TL R++ G+T +AP + R+EA P ALW D+++G + Sbjct 129 GLVDRMRRSTLYRHWASAGITRRRLRTAAPKRYRRWEAPEPGALWQSDIMNGPYLPDPTP 188 Query 177 -----LRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSP 231 R TY + +DD+SR + ++ D L L AL G P +YVDNG P Sbjct 189 EDPQRKRPTYCWVLMDDYSRRIVAGQFAWQADLTVLEDLLWEALQRWGAPQRLYVDNGGP 248 Query 232 YVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVAD 291 Y L CA+L +RL+H+TP P G+GK ER + V+ FL E+ +P Sbjct 249 YSSDRLATICARLNIRLIHATPYEPAGKGKQERLWGHVQSSFLPELRAQP-------ADS 301 Query 292 LAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTK 351 L +LN F AW E YHR VHSETG+ PL RW GG + E L AF E RRV K Sbjct 302 LGQLNTWFQAWCEEHYHRRVHSETGEPPLVRWGRGGCHRPLSWEALRAAFRVEVTRRVDK 361 Query 352 TATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAK 411 T + G+R+ + L+ +V+L FDP I+V A RA+ + + P A Sbjct 362 TGQLRWAGHRWVVPEGLLQAEVQLRFDPHQPDTIDVWYHDAYDGRAV--RADQLTQPPAA 419 Query 412 PETPTAPPKPSGIDYAQLIETAHAAELARGVNY 444 + P+ PP +G+ Y ++E A G+ Y Sbjct 420 -DAPSTPPASTGLSYLTVLEARQRARRPAGLRY 451 >gi|339323942|ref|YP_004682835.1| integrase catalytic region [Cupriavidus necator N-1] gi|338171935|gb|AEI82987.1| integrase catalytic region [Cupriavidus necator N-1] Length=453 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 147/416 (36%), Positives = 213/416 (52%), Gaps = 36/416 (8%) Query 41 KMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPR--QCTPRTPAEVLE 98 +++R++A +E+ P RR IS +T+ W WR G L R + + + P V Sbjct 43 RLIRQIAQQEYAIPGSRRRHISEKTLHAWYDTWRREGIAGLASKVRADRGSSKLPEAVQA 102 Query 99 LAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRN-FHRL-GLTGATTGSAPAVF--- 153 +A +RENP+R+ IR +L + A D TL R+ HRL G + + PAV Sbjct 103 AVLAAKRENPRRSIRQIRLLLESAGLVARD--TLSRSAVHRLLKANGLSRIAGPAVVPDE 160 Query 154 -GRFEAEHPNALWTGDVLHGIRIDL----RKTYLFAFLDDHSRLVPGYRWGHAEDTVRLA 208 FEAEH +LW GDV+HG + + RKTYL + +DD SRLV + +E + + Sbjct 161 KRSFEAEHAGSLWYGDVMHGPTLSIDGKRRKTYLVSLMDDASRLVAHSAFCLSETALDIE 220 Query 209 AALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRT 268 + L+ AL RG+P + VDNGS Y A L CA+L +RL++ P +P +GKIER+ RT Sbjct 221 SVLKQALLRRGIPGRLVVDNGSAYRSATLQSICARLSIRLIYCRPYQPASKGKIERWHRT 280 Query 269 VREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSET-GQTPLARWSAGG 327 +REQFL E+ + +L +LN AW+E ++HRS H+ G TPLAR+ Sbjct 281 LREQFLAELDTS-------RIRELGDLNARLWAWIEQIFHRSKHASLGGLTPLARYQQDL 333 Query 328 P---IPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTR 384 P + P L + F + R V + TVS G R+E+ L G+ V LV DP Sbjct 334 PRIRLLGPLAAQLDQLFWYRITRLVRRDGTVSYQGKRFEVPYELAGQHVRLVVDPHTGVV 393 Query 385 IEV------RLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAH 434 + V +L A + R P+A+P TA P +G + LIE AH Sbjct 394 MHVENEAGLQLGAATELDTVANSTRRRQRPQAEP--ATAEPAVAGPN---LIELAH 444 >gi|301059593|ref|ZP_07200505.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300446358|gb|EFK10211.1| integrase core domain protein [delta proteobacterium NaphS2] Length=450 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 136/383 (36%), Positives = 204/383 (54%), Gaps = 38/383 (9%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 + LFRY +I + ++ +R+ A +E+ P RR R++ +TI W++ +R GG Sbjct 10 VALFRYGIIADFVHLPPGSRGLYAQIRKKAGQEYVIPGSRRTRVAEETIRSWLKKYRKGG 69 Query 78 FDALVPNPRQC---TPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDE----- 129 FDAL+P R T + P E+ +L + + + P+ T + + +R G PD+ Sbjct 70 FDALLPKERTDKGETRKLPLEISDLLLEAKEKEPELTVPLLIKKVRAS-GNIPDDVRMPR 128 Query 130 RTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHG--IRID---LRKTYLFA 184 T+ + R GLT T S RF + L+ DV++G +R + RKTYL A Sbjct 129 STVYKLLARHGLTRKIT-SPDRDHRRFAYLNAGDLFMSDVMYGPAVRKNDGRKRKTYLIA 187 Query 185 FLDDHSRLVP------GYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLL 238 F+DD +R++P YR H L+ A+ RG+P ++VDNGS + L Sbjct 188 FIDDATRVIPYAAPIRKYRCLHG--------VLKQAVLRRGIPMRLFVDNGSAFRSQHLS 239 Query 239 RACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRL 298 CAKLG+ L+H+ P +GKIER+FRTVR QFL P + +H + +L +NR Sbjct 240 LVCAKLGITLIHARPYHAAAKGKIERWFRTVRLQFL------PMLSEKHML-NLKAINRA 292 Query 299 FTAWVETVYHRSVHSETGQTPLARWS-AGGPIPLPAP-ETLTEAFLWEEHRRVTKTATVS 356 ++ET YHRS H +TPL RW+ G + P P + L + FL+E R+V K TVS Sbjct 293 LWTYIETEYHRSPHRSLCETPLDRWARVGEKVRYPEPGDDLDDLFLFESKRKVQKDRTVS 352 Query 357 LHGNRYEIDPALVGRKVELVFDP 379 L+G YEID +LVG V L ++P Sbjct 353 LNGMAYEIDASLVGETVTLRYNP 375 >gi|148263178|ref|YP_001229884.1| integrase catalytic subunit [Geobacter uraniireducens Rf4] gi|146396678|gb|ABQ25311.1| Integrase, catalytic region [Geobacter uraniireducens Rf4] Length=426 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 141/411 (35%), Positives = 208/411 (51%), Gaps = 36/411 (8%) Query 13 ERARAIGLFRYQLIWEAADAAH-STKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIR 71 E+ + + +FR+ +I + A +R +++RE +R+ P + R+SR TI RWI Sbjct 4 EQKQRVAVFRFGIIHDFVGGARLDHGERERLLREKCARKWEIPCSNQTRLSRSTILRWIG 63 Query 72 GW--RAGGFDALVPNPRQCTPRTPAEVLE----LAVA-LRRENPQRTAAAI------RRI 118 + G +AL P R R + VL+ LA+A LRR+ P+ T + RR+ Sbjct 64 LYLKERGKLEALYPQGR--NDRGMSRVLDQETGLALAQLRRQQPELTVPELVKQMHERRL 121 Query 119 LRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRI--- 175 + +G + T R HR L G AP +FEAE PN LW DV+HG + Sbjct 122 VTDGVGLSLS--TAYRFLHRHDLMGKQ--PAPVDRRKFEAELPNDLWQSDVMHGPMLLSG 177 Query 176 -DLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVD 234 RKTYL AF+DDHSRL+P R+ +E +A A+ RG+P +YVDNGS + Sbjct 178 DKRRKTYLIAFIDDHSRLIPHGRFYLSEGVACFMSAFSDAVLRRGLPRKLYVDNGSAFRS 237 Query 235 AWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAE 294 L A LG+ LVH+ P +PQG+GKIERFF+ VR FL GE L E Sbjct 238 RQLEYTAAALGIALVHARPYQPQGKGKIERFFKNVRTSFLPSFKGET----------LEE 287 Query 295 LNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVTKTAT 354 +N F W+ YH+ H TG+TP R+++ PAP+ L + F R V K + Sbjct 288 INEAFELWLNDYYHQRSHGSTGETPFKRFTSRMECLRPAPDNLKDYFRKTVRRLVNKDRS 347 Query 355 VSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAP--MRRAIPYHIG 403 V + +E L+G++VEL++ ++E+R A + R + H+ Sbjct 348 VVVDRRLFEAPVELIGKRVELLYFEESPEQVEIRCAEKSYGLLRQVDLHVN 398 >gi|344201023|ref|YP_004785349.1| integrase catalytic subunit [Acidithiobacillus ferrivorans SS3] gi|343776467|gb|AEM49023.1| Integrase catalytic region [Acidithiobacillus ferrivorans SS3] Length=440 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 139/400 (35%), Positives = 199/400 (50%), Gaps = 27/400 (6%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 + LFR ++ + + + +LA RE+ P RR ++ ++TI+ W WR G Sbjct 7 VALFRLSVLGPLISRSLQPGELQHTLLDLAQREYAIPGSRRTQLGQKTIESWYYRWRKNG 66 Query 78 FDALVP---NPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQR 134 D L+P N R C+ + PA V E + +R+NP+R+ IR++L + G Sbjct 67 IDGLIPQQRNDRGCS-KLPAPVQEAILQAKRDNPRRSIRQIRQLLEST-GLVAQGSVSHS 124 Query 135 NFHRL----GLTGAT-TGSAPAVFGRFEAEHPNALWTGDVLHG-----IRIDLRKTYLFA 184 HRL GL+ T + S P F AE A+W GDV+H + LRKTYL + Sbjct 125 AIHRLLQQQGLSQMTGSASQPEEKRSFVAESVGAIWYGDVMHATLRVPVNGQLRKTYLVS 184 Query 185 FLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKL 244 +DD SRL+ + E + + L+ AL RGVP + VDNG+ Y L CA+L Sbjct 185 LMDDASRLITHSAFCLGETALDIEGVLKQALLKRGVPIKLVVDNGAAYRSHTLQGICARL 244 Query 245 GVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVE 304 G+ LV+ P P +GKIER+ RT R QFL E V + L +LN AW+E Sbjct 245 GIHLVYCRPYTPTSKGKIERWHRTFRAQFLSE-------VDERQITHLDDLNARLWAWLE 297 Query 305 TVYHRSVHSET-GQTPLARWSAGGPI--PLPAPETLTEAFLWE-EHRRVTKTATVSLHGN 360 +YHR+ H+ G TPLAR+ P L + +A + E R V K TVS G Sbjct 298 QIYHRAPHAGLGGLTPLARYQQDLPKIRSLGSRAVQLDALFYHREKRFVRKDGTVSYLGQ 357 Query 361 RYEIDPALVGRKVELVFDPFDLTRIEVR-LAGAPMRRAIP 399 R+E+ L G+ V LV DP ++V AGA + +A P Sbjct 358 RFEVPYVLSGKTVMLVVDPHAGAVVDVEDEAGASLGKATP 397 >gi|257091592|ref|YP_003165235.1| hypothetical protein CAP2UW1_4661 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257092960|ref|YP_003166601.1| integrase catalytic subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257093497|ref|YP_003167138.1| integrase catalytic subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257094937|ref|YP_003168578.1| integrase catalytic subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045484|gb|ACV34672.1| Integrase catalytic region [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046021|gb|ACV35209.1| Integrase catalytic region [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047461|gb|ACV36649.1| Integrase catalytic region [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048601|gb|ACV37788.1| hypothetical protein CAP2UW1_4661 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length=441 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/410 (37%), Positives = 207/410 (51%), Gaps = 29/410 (7%) Query 41 KMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPR--QCTPRTPAEVLE 98 K +RELA+RE+ P R + +TI+ W +RA G D L+P R + + A V Sbjct 31 KSLRELATREYVIPGTDRRLLGEKTIEGWYYRYRARGLDGLIPKVRADRGQSKLSASVQA 90 Query 99 LAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRN-FHRL----GLTGA-TTGSAPAV 152 +A +RENP+R+ I+R+L ++G TL R+ HRL GL+ + S P Sbjct 91 AILAAKRENPRRSIRQIQRVL--EIGGIVARGTLSRSSLHRLLQQHGLSRLPGSASLPEE 148 Query 153 FGRFEAEHPNALWTGDVLHGIRI----DLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLA 208 F A LW DV+HG R+ L K+YL + DD SRLV + E + + Sbjct 149 KRSFVAACAGELWYSDVMHGPRVPIGGRLGKSYLVSLFDDASRLVAHGAFCRGETALDIE 208 Query 209 AALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRT 268 L+ AL RGVP + VDNG+ YV L CA+LG+ LVH P P+ +GKIER+ RT Sbjct 209 GVLKQALLKRGVPVKLVVDNGAAYVAQTLQGICARLGIVLVHCRPYAPESKGKIERWHRT 268 Query 269 VREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSET-GQTPLARWSAGG 327 R+QFL E+ +V L +LN AW+E VYHR+ H GQTPLAR+ Sbjct 269 CRDQFLSEVE-------ERHVLSLDDLNARLWAWLEQVYHRTPHDGLEGQTPLARYQQDL 321 Query 328 P---IPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTR 384 P + P TL FL R V K TVS G R+E+ L G+ V L DP T Sbjct 322 PKIRLLGPLAATLDTLFLHRVRRLVRKDGTVSYQGGRFEVPFELTGKTVCLRVDPHTETV 381 Query 385 IEVRL-AGAPMRRAIPYH-IGRHSHPKAKPETPTAPP--KPSGIDYAQLI 430 + V AG + RA P + + +P+ A P +P+G + +L+ Sbjct 382 VGVENDAGELIGRATPLDALANRDRRRRQPDPVAAVPVKRPAGPNLVELV 431 >gi|94266440|ref|ZP_01290134.1| Integrase, catalytic region [delta proteobacterium MLMS-1] gi|93452951|gb|EAT03453.1| Integrase, catalytic region [delta proteobacterium MLMS-1] Length=447 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/380 (35%), Positives = 191/380 (51%), Gaps = 20/380 (5%) Query 12 AERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIR 71 A+ A I LFRY LI + TK ++ E A+R + P R R++ +TI W++ Sbjct 6 ADPANQIALFRYGLIADLIHLPPGTKGLYGLIAEKAARSYAIPGSSRTRVACETIRDWLK 65 Query 72 GWRAGGFDALVPNPRQCTPRT---PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPD 128 +R GF+ L+P R R+ P EV +L +A++ ENP+ + + ++ P Sbjct 66 KYRKDGFNGLLPKGRNDKGRSRSLPPEVADLLIAIKEENPELSIRQVIAAAADRIPVQPA 125 Query 129 ERTLQRNFHRLGLTGATTGSAPAVFG--RFEAEHPNALWTGDVLHGIRI-----DLRKTY 181 T+ GL G P RF + L+ DV+HG + RKTY Sbjct 126 PSTVHALLAGKGLM-KKKGEDPDSKDHRRFSYQFAGDLFMCDVMHGPTVRTSGNKRRKTY 184 Query 182 LFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRAC 241 L AF+DD +R++ + +E T + + RG+P ++VDNG+ + L C Sbjct 185 LIAFIDDATRVIAFAAFAMSESTADFMTVFKQTIIRRGIPLRLFVDNGAAFRSQHLALVC 244 Query 242 AKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTA 301 AKLG+ L+H+ Q +GKIER+FRT+R QFL ++ L LNR + Sbjct 245 AKLGITLIHARAYHAQAKGKIERWFRTIRLQFL-------PLLDPASTDSLEALNRALWS 297 Query 302 WVETVYHRSVHSETGQTPLARWS-AGGPIPLPAPE-TLTEAFLWEEHRRVTKTATVSLHG 359 +VE YHR+ H G+TPL RW+ G + P P L + FL+E R+V K TVSL+ Sbjct 298 YVEMEYHRNHHRMLGETPLDRWARLGHKVRYPEPGLDLDDLFLFEAKRKVHKDRTVSLNT 357 Query 360 NRYEIDPALVGRKVELVFDP 379 YE+D ALVG V L FDP Sbjct 358 LAYEVDAALVGETVILRFDP 377 >gi|94263900|ref|ZP_01287704.1| Integrase, catalytic region [delta proteobacterium MLMS-1] gi|93455721|gb|EAT05896.1| Integrase, catalytic region [delta proteobacterium MLMS-1] Length=447 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/380 (35%), Positives = 190/380 (50%), Gaps = 20/380 (5%) Query 12 AERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIR 71 A+ A I LFRY LI + TK ++ E A+R + P R R++ +TI W++ Sbjct 6 ADPANQIALFRYGLIADLIHLPPGTKGLYGLIAEKAARSYAIPGSSRTRVACETIRDWLK 65 Query 72 GWRAGGFDALVPNPRQCTPRT---PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPD 128 +R GF+ L+P R R+ P EV +L +A + ENP+ + + ++ P Sbjct 66 KYRKDGFNGLLPKGRNDKGRSRSLPPEVADLLIATKEENPELSIRQVIAATADRIPVQPA 125 Query 129 ERTLQRNFHRLGLTGATTGSAPAVFG--RFEAEHPNALWTGDVLHGIRI-----DLRKTY 181 T+ GL G P RF + L+ DV+HG + RKTY Sbjct 126 PSTVHALLAGKGLM-KKKGEDPDSKDHRRFSYQFAGDLFMCDVMHGPTVRTSGNKRRKTY 184 Query 182 LFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRAC 241 L AF+DD +R++ + +E T + + RG+P ++VDNG+ + L C Sbjct 185 LIAFIDDATRVIAFAAFAMSESTADFMTVFKQTIIRRGIPLRLFVDNGAAFRSQHLALVC 244 Query 242 AKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTA 301 AKLG+ L+H+ Q +GKIER+FRT+R QFL ++ L LNR + Sbjct 245 AKLGITLIHARAYHAQAKGKIERWFRTIRLQFL-------PLLDPASTDSLEALNRALWS 297 Query 302 WVETVYHRSVHSETGQTPLARWS-AGGPIPLPAPE-TLTEAFLWEEHRRVTKTATVSLHG 359 +VE YHR+ H G+TPL RW+ G + P P L + FL+E R+V K TVSL+ Sbjct 298 YVEMEYHRNHHRMLGETPLDRWARLGHKVRYPEPGLDLDDLFLFEAKRKVHKDRTVSLNT 357 Query 360 NRYEIDPALVGRKVELVFDP 379 YE+D ALVG V L FDP Sbjct 358 LAYEVDAALVGETVTLRFDP 377 >gi|94263329|ref|ZP_01287144.1| Integrase, catalytic region [delta proteobacterium MLMS-1] gi|93456284|gb|EAT06414.1| Integrase, catalytic region [delta proteobacterium MLMS-1] Length=447 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/380 (35%), Positives = 190/380 (50%), Gaps = 20/380 (5%) Query 12 AERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIR 71 A+ A I LFRY LI + TK ++ E A+R + P R R++ +TI W++ Sbjct 6 ADPANQIALFRYGLIADLIHLPPGTKGLYGLIAEKAARSYAIPGSSRTRVACETIRDWLK 65 Query 72 GWRAGGFDALVPNPRQCTPRT---PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPD 128 +R GF+ L+P R R+ P EV +L +A + ENP+ + + ++ P Sbjct 66 KYRKDGFNGLLPKGRNDKGRSRSLPPEVADLLIATKEENPELSIRQVIAATADRIPVQPA 125 Query 129 ERTLQRNFHRLGLTGATTGSAPAVFG--RFEAEHPNALWTGDVLHGIRI-----DLRKTY 181 T+ GL G P RF + L+ DV+HG + RKTY Sbjct 126 PSTVHALLAGKGLM-KKKGEDPDSKDHRRFSYQFAGDLFMCDVMHGPTVRTSGNKRRKTY 184 Query 182 LFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRAC 241 L AF+DD +R++ + +E T + + RG+P ++VDNG+ + L C Sbjct 185 LIAFIDDATRVIAFAAFAMSESTADFMTVFKQTIIRRGIPLRLFVDNGAAFRSQHLALVC 244 Query 242 AKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTA 301 AKLG+ L+H+ Q +GKIER+FRT+R QFL ++ L LNR + Sbjct 245 AKLGITLIHARAYHAQAKGKIERWFRTIRLQFL-------PLLDPASTDSLEALNRALWS 297 Query 302 WVETVYHRSVHSETGQTPLARWS-AGGPIPLPAPE-TLTEAFLWEEHRRVTKTATVSLHG 359 +VE YHR+ H G+TPL RW+ G + P P L + FL+E R+V K TVSL+ Sbjct 298 YVEMEYHRNHHRMLGETPLDRWARLGHKVRYPEPGLDLDDLFLFEAKRKVHKDRTVSLNT 357 Query 360 NRYEIDPALVGRKVELVFDP 379 YE+D ALVG V L FDP Sbjct 358 LAYEVDAALVGETVTLRFDP 377 >gi|301062948|ref|ZP_07203521.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300442949|gb|EFK07141.1| integrase core domain protein [delta proteobacterium NaphS2] Length=359 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 124/342 (37%), Positives = 186/342 (55%), Gaps = 23/342 (6%) Query 43 VRELASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQC---TPRTPAEVLEL 99 +R+ A +E+ P RR R++ +TI W++ +R GGFDAL+P R T + P E+ +L Sbjct 18 IRKKAGQEYVIPGSRRTRVAEETIRSWLKKYRKGGFDALLPKERTDKGETRKLPLEISDL 77 Query 100 AVALRRENPQRTAAAIRRILRTQLGWAPDE-----RTLQRNFHRLGLTGATTGSAPAVFG 154 + + + P+ T + + +R G PD+ T+ + R GLT T S Sbjct 78 LLEAKEKEPELTVPLLIKKVRAS-GNIPDDVRMPRSTVYKLLARHGLTRKIT-SPDRDHR 135 Query 155 RFEAEHPNALWTGDVLHG--IRID---LRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAA 209 RF + L+ DV++G +R + RKTYL AF+DD +R++P + H+E+T Sbjct 136 RFAYLNAGDLFMSDVMYGPAVRKNDGRKRKTYLIAFIDDATRVIPYAAFAHSENTAAFME 195 Query 210 ALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTV 269 L+ A+ RG+P ++VDNGS + L CAKLG+ L+H+ P +GKIER+FRTV Sbjct 196 VLKQAVLRRGIPMRLFVDNGSAFRSQHLSLVCAKLGITLIHARPYHAAAKGKIERWFRTV 255 Query 270 REQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWS-AGGP 328 R QFL P + +H + +L +NR ++ET YHRS H +TPL RW+ G Sbjct 256 RLQFL------PMLSEKHML-NLKAINRALWTYIETEYHRSPHRSLCETPLDRWARVGEK 308 Query 329 IPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVG 370 + P P + R+V K TVSL+G YEID +LVG Sbjct 309 VRYPEPGDDLDDLFLLIKRKVQKDRTVSLNGMAYEIDASLVG 350 >gi|94266898|ref|ZP_01290554.1| Integrase, catalytic region [delta proteobacterium MLMS-1] gi|93452425|gb|EAT03036.1| Integrase, catalytic region [delta proteobacterium MLMS-1] Length=447 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 130/380 (35%), Positives = 190/380 (50%), Gaps = 20/380 (5%) Query 12 AERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIR 71 A+ A I LFRY LI + TK ++ E A+R + P R R++ +TI W++ Sbjct 6 ADPANQIALFRYGLIADLIHLPPGTKGLYGLIAEKAARSYAIPGSSRTRVACETIRDWLK 65 Query 72 GWRAGGFDALVPNPRQCTPRT---PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPD 128 +R GF+ L+P R R+ P EV +L +A + ENP+ + + ++ P Sbjct 66 KYRKDGFNGLLPKGRNDKGRSRSLPPEVADLLIATKEENPELSIRQVIAAAADRIPVQPA 125 Query 129 ERTLQRNFHRLGLTGATTGSAPAVFG--RFEAEHPNALWTGDVLHGIRI-----DLRKTY 181 T+ GL G P RF + L+ DV+HG + RKTY Sbjct 126 PSTVHALLAGKGLM-KKKGEDPDSKDHRRFSYQFAGDLFMCDVMHGPTVRTSGNKRRKTY 184 Query 182 LFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRAC 241 L AF+DD +R++ + +E T + + RG+P ++VDNG+ + L C Sbjct 185 LIAFIDDATRVIAFAAFAMSESTADFMTVFKQTIIRRGIPLRLFVDNGAAFRSQHLALVC 244 Query 242 AKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTA 301 AKLG+ L+H+ Q +GKIER+FRT+R QFL ++ L LNR + Sbjct 245 AKLGITLIHARAYHAQAKGKIERWFRTIRLQFL-------PLLDPASTDSLEALNRALWS 297 Query 302 WVETVYHRSVHSETGQTPLARWS-AGGPIPLPAPE-TLTEAFLWEEHRRVTKTATVSLHG 359 +VE YHR+ H G+TPL RW+ G + P P L + FL+E R+V K TVSL+ Sbjct 298 YVEMEYHRNHHRMLGETPLDRWARLGHKVRYPEPGLDLDDLFLFEAKRKVHKDRTVSLNT 357 Query 360 NRYEIDPALVGRKVELVFDP 379 YE+D ALVG V L FDP Sbjct 358 LAYEVDAALVGETVILRFDP 377 >gi|78044774|ref|YP_361434.1| ISChy3, transposase [Carboxydothermus hydrogenoformans Z-2901] gi|78045016|ref|YP_360086.1| ISChy3, transposase [Carboxydothermus hydrogenoformans Z-2901] gi|77996889|gb|ABB15788.1| ISChy3, transposase [Carboxydothermus hydrogenoformans Z-2901] gi|77997131|gb|ABB16030.1| ISChy3, transposase [Carboxydothermus hydrogenoformans Z-2901] Length=448 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 136/383 (36%), Positives = 190/383 (50%), Gaps = 27/383 (7%) Query 58 RVRISRQTIDRWIRGWRAGGFDALVPNPR--QCTPRTPA-EVLELAVALRRENPQRTAAA 114 R IS +T+ R+++ +R G L+P R + RT + E++E AV L+ E P+R+ + Sbjct 45 RSEISSRTLRRYLQLYRQQGLSGLMPKIRSDNGSSRTISHEIIEEAVKLKEELPERSVSQ 104 Query 115 IRRILRTQL---GWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLH 171 I IL + TL R+ RLGLT + RF E N LW D+ + Sbjct 105 IIAILEGEKKVPAGMLARSTLGRHLSRLGLTQKEANQKISGHRRFAKEQRNRLWQADIKY 164 Query 172 GIRIDLRK-------TYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAV 224 G + K TYL AF+DD +RL+ + + L R A+ RG+P+AV Sbjct 165 GPYLPHPKNPKRKVRTYLVAFIDDATRLLCHGEFYLDQKRPVLEDCFRKAILKRGIPDAV 224 Query 225 YVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEIT-GEPDV 283 YVDNG +V W CA+LG+R +++ P P+ +GKIERF RTV E F+ EI +P+ Sbjct 225 YVDNGKIFVSRWFRLGCARLGIRPINTKPYSPESKGKIERFNRTV-ESFIAEIELQQPET 283 Query 284 VGRHYVADLAELNRLFTAWVETVYHRSVHSE-TGQTPLARWSAGG-PIPLPAPETLTEAF 341 LAELN+ F WVE Y+ HS +TP R+ + + E EAF Sbjct 284 --------LAELNQAFAVWVEEGYNHHPHSSLENETPANRFQKDTRRLRFASLEECREAF 335 Query 342 LWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYH 401 LWE RRV KT + L G YEI + + V+L +DPFDL IE G A P Sbjct 336 LWEASRRVDKTGCIKLEGRFYEIGLEWIRKTVDLRYDPFDLESIEFWYNGQKQGLAKPLV 395 Query 402 IGRHSH--PKAKPETPTAPPKPS 422 I +++ K K E PK S Sbjct 396 IQEYNNLAAKNKKEQENKTPKTS 418 >gi|255019415|ref|ZP_05291523.1| Integrase, catalytic region [Acidithiobacillus caldus ATCC 51756] gi|254971153|gb|EET28607.1| Integrase, catalytic region [Acidithiobacillus caldus ATCC 51756] Length=437 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 150/436 (35%), Positives = 215/436 (50%), Gaps = 34/436 (7%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 + LFR ++ + + + ++VRELA R + P RR +S +TI +R G Sbjct 8 VALFRLSVLGPLLHRSLNRGEFQRLVRELAERHYEVPGSRRTLLSPKTIAARYYAYRDHG 67 Query 78 FDALVPNPRQCTPRT--PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRN 135 D L P PR+ R+ AEV E + L+RENP+R+ I +L + G P + Sbjct 68 IDGLAPRPRRDRGRSQIAAEVQEQILVLKRENPRRSLGQIVLLLESS-GQVPLGSVSRSA 126 Query 136 FHRL----GLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDL----RKTYLFAFLD 187 HRL GL+ AP F A H +W GDVLHG RI L RK YL + +D Sbjct 127 IHRLLQHHGLSRPEE-RAPEEKRSFVAAHAGDVWYGDVLHGPRISLHGKPRKVYLVSLMD 185 Query 188 DHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVR 247 D SRL+ + E + + L+ AL RGVP + VDNG+ Y A L C LG+ Sbjct 186 DASRLLTHSAFCLGETALDIEGVLKQALLKRGVPRKLVVDNGAAYRSASLQGICVHLGIA 245 Query 248 LVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVY 307 L++ P P+G+GK+ER+ RT R+QFL E+ + L +LN AW+E VY Sbjct 246 LIYCRPYAPEGKGKLERWHRTFRDQFLSEMDLRA-------IRGLDDLNARLWAWLEQVY 298 Query 308 HRSVHSE-TGQTPLARWSAGGP----IPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRY 362 H+ H G +PL R+ P + + AP + + F R+V K TVS G R+ Sbjct 299 HQRPHGGLAGVSPLQRYQQDLPHIRSLGIQAPR-IDDLFYHRLPRKVRKDGTVSWEGRRF 357 Query 363 EIDPALVGRKVELVFDPFD--LTRIEVRLAGAPMRRAIPYHIGRHSH-PKAKPE-TPTAP 418 E+ L G+ V LV DP + R+E + G + A P + ++ + KP P AP Sbjct 358 EVPYELAGKAVTLVVDPHGKRVLRVE-KETGEDLGPATPLDLEANAQRRRHKPSPAPDAP 416 Query 419 PKPSGIDYAQLIETAH 434 KPS + L+E AH Sbjct 417 EKPS----SSLVEIAH 428 >gi|303243221|ref|ZP_07329645.1| Integrase catalytic region [Acetivibrio cellulolyticus CD2] gi|302589237|gb|EFL59061.1| Integrase catalytic region [Acetivibrio cellulolyticus CD2] Length=444 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/417 (34%), Positives = 206/417 (50%), Gaps = 38/417 (9%) Query 61 ISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPA---EVLELAVALRRENPQRTAAAIRR 117 IS +T+ R++ +R ++ L+ RQ +T A EVL+ A LR+E P+R+ I R Sbjct 43 ISERTLRRYVAAYRENNYEGLLKKTRQDIGKTKAISQEVLDRAAELRQELPERSIRRIIR 102 Query 118 ILR---TQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFG----RFEAEHPNALWTGDVL 170 IL T TL R+ +G GA + G RF+ N LW D+ Sbjct 103 ILEGEGTVKKGDISRSTLSRHLLNMGF-GAKELKNTKITGNAVRRFQKSGRNMLWQSDIK 161 Query 171 HGIRI-----DLRKTYLFAFLDDHSRLVPGYRWGHAE--DTVRL---AAALRPALASRGV 220 +G I ++TY+ AF+DD +RLV HAE D RL R A+ G Sbjct 162 YGPFIPTANGGKKRTYMVAFIDDATRLVC-----HAEFYDNQRLPILEDCFRKAILKYGK 216 Query 221 PNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGE 280 P+AVYVDNG YV W ACAKLG+R +++ P+ +GKIERF T+ E+FL EI+ E Sbjct 217 PDAVYVDNGKVYVSRWFRVACAKLGIRHINTKAYSPESKGKIERFNSTM-EEFLQEISLE 275 Query 281 PDVVGRHYVADLAELNRLFTAWVETVYHRSVHSE-TGQTPLARWSAG-GPIPLPAPETLT 338 L ELNR F W++ Y+ HS G TP+ +S + PE Sbjct 276 KP-------KSLEELNRKFRIWLDEGYNMREHSSLKGITPMQAYSRDPKKVKFATPEECA 328 Query 339 EAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAI 398 +AFLWE+ R+V T + L+G YE +G+KV++ +DPFD+ +E+ +G ++ Sbjct 329 DAFLWEDTRKVDNTGCIKLNGYEYEAGIEYIGKKVDVRYDPFDMGLVEIWYSGERKKKVS 388 Query 399 PYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIETAHAAELARGV-NYTALTGAADQI 454 P IG + K + + T S + E A + GV ++ ++ G +D + Sbjct 389 PLTIGEYC-GKVQKSSSTVKTTHSRLLKVYEQENAKRQKQRIGVLSFRSMKGGSDNV 444 >gi|317134049|ref|YP_004089960.1| Integrase catalytic region [Ruminococcus albus 7] gi|315450511|gb|ADU24074.1| Integrase catalytic region [Ruminococcus albus 7] Length=444 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 133/424 (32%), Positives = 202/424 (48%), Gaps = 35/424 (8%) Query 49 REHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPR--QCTPRTPAEVLELAVALRRE 106 RE ++ F +S +TI R++ + G D L P R + P E+LE A+ LRRE Sbjct 38 REISENF----ELSTRTIQRYVDAYNESGIDGLEPKGRVPEQNPVISKEILEEAIRLRRE 93 Query 107 NPQRTAAAIRRILRTQLGWAPD---ERTLQRNFHRLGLTGAT------TGSAPAVFGRFE 157 P R+ I +IL + PD TLQ+ ++G + A G A F R Sbjct 94 MPSRSVPTIIKILELEGKVEPDMLKRSTLQKALAKMGYSSAMMKVYQDNGYASQRFARV- 152 Query 158 AEHPNALWTGDVLHGIRIDL----RKTYLFAFLDDHSR-LVPGYRWGHAEDTVRLAAALR 212 H LW GD+ G +++ + TY+ +DD +R ++ +G E T+ + L+ Sbjct 153 --HRCDLWQGDLKFGPSLNIGGKVQPTYMSCLIDDATRYIIHAQFYGDMEQTI-VEDTLK 209 Query 213 PALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQ 272 + G P +Y DNGS Y W+ RAC LG+RL+++ P PQG+GK ERF TV + Sbjct 210 KGIKKYGTPRRIYFDNGSQYRTHWMKRACGLLGIRLLYAKPRNPQGKGKQERFNLTV-DS 268 Query 273 FLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTP-LARWSAGGPIPL 331 F+ D VG + + ELN+LF AW+ Y VHS G TP A S P+ Sbjct 269 FI-------DEVGLNPPESIEELNKLFNAWLSECYQNKVHSALGVTPETAFKSDSMPLNY 321 Query 332 PAPETLTEAFLWEEHRRVTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAG 391 P L AFL E R+V K+ +S G Y++ G+ V++V+DP ++ ++ + Sbjct 322 PDEAILASAFLHCETRKVNKSGCISFMGKDYDVGILYAGQTVDVVYDPQNIAKVRIEPKS 381 Query 392 APMRRAIPYHIGRHSHPK-AKPETPTAPPKPSGIDYAQLIETAHAAELARGVNYTALTGA 450 A P IG H K + E P S + A +I+TA E ++Y+ G Sbjct 382 HEPFYAEPAKIGTHVAKKPTRAEIERIPTDSSRLLDA-VIKTADERERRAVISYSIAMGG 440 Query 451 ADQI 454 + + Sbjct 441 DEDV 444 >gi|340781499|ref|YP_004748106.1| integrase catalytic subunit [Acidithiobacillus caldus SM-1] gi|340781846|ref|YP_004748453.1| integrase catalytic subunit [Acidithiobacillus caldus SM-1] gi|340555652|gb|AEK57406.1| Integrase, catalytic region [Acidithiobacillus caldus SM-1] gi|340555999|gb|AEK57753.1| Integrase, catalytic region [Acidithiobacillus caldus SM-1] Length=437 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 143/435 (33%), Positives = 212/435 (49%), Gaps = 32/435 (7%) Query 18 IGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWIRGWRAGG 77 + LFR ++ + + ++V+ELA R + P RR +S +TI W +R G Sbjct 8 VALFRLSVLGPLLHRPLNRGEFQRLVQELAERHYEIPGSRRTLLSAKTIAAWYYAYRDHG 67 Query 78 FDALVPNPRQCTPRT--PAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRN 135 D L P PR+ R+ AE+ E + L+RENP+R+ I +L + G P + Sbjct 68 IDGLAPRPRRDRGRSQIAAEIQEQILVLKRENPRRSLGQIVLLLESS-GQVPLGSVSRSA 126 Query 136 FHRL----GLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDL----RKTYLFAFLD 187 HRL GL+ AP F A H +W GDVLHG RI L RK YL + +D Sbjct 127 IHRLLQHHGLSRPEE-RAPEEKRSFVAAHAGDVWYGDVLHGPRISLHGKPRKVYLVSLMD 185 Query 188 DHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVR 247 D SRL+ + E + + L+ AL RGVP + VDNG+ Y L C +LG+ Sbjct 186 DASRLLTHSAFCLGETALDIEGVLKQALLKRGVPRKLVVDNGAAYRSGSLQSICVRLGIA 245 Query 248 LVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVY 307 L++ P P+G+GK+ER+ RT R+QFL E+ + L +LN AW+E VY Sbjct 246 LIYCRPYAPEGKGKLERWHRTFRDQFLSELDLRA-------IRGLDDLNARLWAWLEQVY 298 Query 308 HRSVHSE-TGQTPLARWSAGGP----IPLPAPETLTEAFLWEEHRRVTKTATVSLHGNRY 362 H+ H G TPL R+ P + + A + + F R+V K TVS G R+ Sbjct 299 HQRPHGGLAGLTPLQRYQQDLPHIRSLGIQAAR-IDDLFYHRLPRKVRKDGTVSWEGRRF 357 Query 363 EIDPALVGRKVELVFDPFD--LTRIEVRLAGAPMRRAIPYHIGRHSH-PKAKPETPTAPP 419 E+ L G+ V LV DP + R+E + G + P + ++ + KP + P Sbjct 358 EVPYELAGKAVTLVVDPHGERVLRVE-KETGEDLGPGTPLDLEANAQRRRHKPSPASDAP 416 Query 420 KPSGIDYAQLIETAH 434 + +G + L+E AH Sbjct 417 EKTG---SSLVEIAH 428 >gi|78043439|ref|YP_361311.1| ISChy6, transposase [Carboxydothermus hydrogenoformans Z-2901] gi|77995554|gb|ABB14453.1| ISChy6, transposase [Carboxydothermus hydrogenoformans Z-2901] Length=415 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/421 (33%), Positives = 199/421 (48%), Gaps = 41/421 (9%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 +EKVR + + LFRY L+ + S +Q + ++ S+ H PF + +T+ Sbjct 2 DEKVREK----VALFRYGLLAPVLNGQVSNQQ--EYFAQICSKVHEVPFYGPKEFTPKTL 55 Query 67 DRWIRGWRAGGFDALVPNPRQCTPRTPAEVL-----ELAVALRRENPQRTAAAIRR---- 117 W+ +R GFD L P R + R VL E +ALR+E A+ Sbjct 56 AGWLLSYRRFGFDGLKPKIR--SDRGKHRVLSREQEEYLIALRKELRDLPASVFYERLVD 113 Query 118 ---ILRTQLGWAPDERTLQRNFHRLGLTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIR 174 IL + +A T+ R + GL G + +P RF + N LW GD+ G Sbjct 114 RGEILPKDVSYA----TVYRLLKKYGLVGNESPKSPER-KRFSYDTVNVLWQGDMSVGPY 168 Query 175 I----DLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGS 230 I KT+LFAF+DD SRLVP ++ +E L + AL RG+P VYVDNG Sbjct 169 IVQNGKKLKTFLFAFIDDCSRLVPFAQFFFSEKFESLRTVFKEALIRRGIPKMVYVDNGK 228 Query 231 PYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVA 290 Y ACA LG+ L H+ P +GKIERFF TV+ +F + +P + Sbjct 229 IYRSDTFQIACASLGIILTHTQPYDAPSKGKIERFFGTVKTRFFPLLKEKP-------AS 281 Query 291 DLAELNRLFTAWVETVYHRSVHSETGQTPLARW--SAGGPIPLPAPETLTEAFLWEEHRR 348 L ELNR F W+E YHR VH+ G TPL + + P +L FL E R+ Sbjct 282 SLEELNRRFWQWLEEDYHRKVHASLGMTPLDVYLSQVSQVRMIDDPASLDPLFLKREMRK 341 Query 349 VTKTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHP 408 V T+S++ YE+ P +G+K+E+ FD + V G + +AIP + ++ Sbjct 342 VKHDGTISVNNKLYEVPPRFIGQKIEVRFDE---DVVYVYENGIAVDKAIPVNFADNAKV 398 Query 409 K 409 K Sbjct 399 K 399 >gi|333922969|ref|YP_004496549.1| integrase catalytic subunit [Desulfotomaculum carboxydivorans CO-1-SRB] gi|333748530|gb|AEF93637.1| Integrase catalytic region [Desulfotomaculum carboxydivorans CO-1-SRB] Length=415 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 133/415 (33%), Positives = 196/415 (48%), Gaps = 29/415 (6%) Query 7 EEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTI 66 +EK+R +I LFRY LI + S ++ + E+A ++H P+ + +TI Sbjct 3 DEKIR----ESIALFRYGLIAPILNGQVSCQK--TYLEEVAGKKHQVPYYGEKEFTPKTI 56 Query 67 DRWIRGWRAGGFDALVPNPR----QCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQ 122 W+ +R GF L P R QC + A+ E ++LR++ + L Q Sbjct 57 SCWLLDYRRAGFAGLKPKGRSDKGQCR-KLNAQQEERLLSLRQQYRDMPVSVFYDQLVDQ 115 Query 123 LGWAPDERTLQRNFHRLGLTGATTGSAPAVF--GRFEAEHPNALWTGDVLHGIRIDLR-- 178 P E + + L G APA RF + N LW GD+ G + L Sbjct 116 GEILPKEVSYATVYRFLRKHGLIARDAPAKQERKRFAYDKVNILWQGDMSVGPYLLLNGR 175 Query 179 --KTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVDAW 236 KT+LF F+DD SR+VP ++ +E L + AL RG+P VYVDNG Y Sbjct 176 KTKTFLFGFIDDCSRIVPFAQFTVSEKFDALKNVFKEALIRRGIPKIVYVDNGKIYRADT 235 Query 237 LLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGEPDVVGRHYVADLAELN 296 ACA LG+ L H+ P +GKIERFF TV+ +F + +P + L ELN Sbjct 236 FHIACASLGIVLTHTKPYDAASKGKIERFFGTVKTRFFPLLKSQPP-------SSLDELN 288 Query 297 RLFTAWVETVYHRSVHSETGQTPLARW--SAGGPIPLPAPETLTEAFLWEEHRRVTKTAT 354 + F W+E YHR +HS G TPL + A + P +L FL R+V T Sbjct 289 QRFWRWLEEDYHRKIHSSLGMTPLDMYLSQASSVRMVDDPASLDVLFLKRVQRKVKHDGT 348 Query 355 VSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPK 409 VSL G +E+ P +G++VEL +D T + V +G + A+P + ++ K Sbjct 349 VSLMGRLFELPPQFIGQRVELRYDD---TGVYVYESGVQVATAVPVNFADNARVK 400 Lambda K H 0.321 0.136 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 991704033964 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40