BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2818c Length=382 Score E Sequences producing significant alignments: (Bits) Value gi|15842359|ref|NP_337396.1| hypothetical protein MT2885 [Mycoba... 775 0.0 gi|323718575|gb|EGB27742.1| csm6 family CRISPR-associated protei... 775 0.0 gi|15609955|ref|NP_217334.1| hypothetical protein Rv2818c [Mycob... 773 0.0 gi|148824007|ref|YP_001288761.1| hypothetical protein TBFG_12832... 773 0.0 gi|289448479|ref|ZP_06438223.1| csm6 family CRISPR-associated pr... 771 0.0 gi|340627814|ref|YP_004746266.1| hypothetical protein MCAN_28421... 733 0.0 gi|298526287|ref|ZP_07013696.1| conserved hypothetical protein [... 688 0.0 gi|31793994|ref|NP_856487.1| hypothetical protein Mb2842c [Mycob... 615 3e-174 gi|121638697|ref|YP_978921.1| hypothetical protein BCG_2837c [My... 615 3e-174 gi|306781001|ref|ZP_07419338.1| CRISPR-associated protein, Csm6 ... 478 7e-133 gi|308371143|ref|ZP_07423964.2| hypothetical protein TMCG_02062 ... 298 8e-79 gi|306781005|ref|ZP_07419342.1| hypothetical protein TMBG_02955 ... 298 1e-78 gi|298525991|ref|ZP_07013400.1| predicted protein [Mycobacterium... 167 2e-39 gi|315925049|ref|ZP_07921266.1| conserved hypothetical protein [... 145 1e-32 gi|257413192|ref|ZP_04742265.2| CRISPR-associated protein, Csm6 ... 138 2e-30 gi|224543479|ref|ZP_03684018.1| hypothetical protein CATMIT_0268... 124 2e-26 gi|296133515|ref|YP_003640762.1| CRISPR-associated protein Csm6 ... 121 3e-25 gi|331004045|ref|ZP_08327527.1| hypothetical protein HMPREF0491_... 118 2e-24 gi|292669136|ref|ZP_06602562.1| conserved hypothetical protein [... 114 2e-23 gi|253578032|ref|ZP_04855304.1| conserved hypothetical protein [... 114 3e-23 gi|291460043|ref|ZP_06599433.1| CRISPR-associated protein, Csm6 ... 112 1e-22 gi|323141543|ref|ZP_08076429.1| putative CRISPR-associated prote... 110 4e-22 gi|341822667|emb|CCC73591.1| putative uncharacterized protein [M... 106 8e-21 gi|238018272|ref|ZP_04598698.1| hypothetical protein VEIDISOL_00... 102 8e-20 gi|303231923|ref|ZP_07318631.1| CRISPR-associated protein, Csm6 ... 101 2e-19 gi|334126725|ref|ZP_08500673.1| hypothetical protein HMPREF9081_... 100 4e-19 gi|342213924|ref|ZP_08706637.1| putative CRISPR type III-A/MTUBE... 98.6 2e-18 gi|258645681|ref|ZP_05733150.1| CRISPR-associated protein, Csm6 ... 97.1 5e-18 gi|312899100|ref|ZP_07758478.1| CRISPR-associated protein, Csm6 ... 94.7 2e-17 gi|114567261|ref|YP_754415.1| hypothetical protein Swol_1746 [Sy... 88.6 1e-15 gi|229826475|ref|ZP_04452544.1| hypothetical protein GCWU000182_... 88.6 2e-15 gi|333976325|gb|EGL77194.1| CRISPR-associated protein, Csm6 fami... 85.9 1e-14 gi|322387549|ref|ZP_08061158.1| hypothetical protein HMPREF9423_... 73.2 7e-11 gi|322375481|ref|ZP_08049994.1| CRISPR-associated protein, Csm6 ... 71.2 3e-10 gi|270292491|ref|ZP_06198702.1| conserved hypothetical protein [... 70.1 5e-10 gi|315641548|ref|ZP_07896617.1| csm6 family CRISPR-associated pr... 67.0 5e-09 gi|322387548|ref|ZP_08061157.1| hypothetical protein HMPREF9423_... 64.3 3e-08 gi|57865879|ref|YP_189999.1| hypothetical protein SERP2456 [Stap... 63.2 7e-08 gi|329736405|gb|EGG72674.1| CRISPR-associated protein, Csm6 fami... 62.8 1e-07 gi|289549404|ref|YP_003470308.1| CRISPR-associated protein Csm6 ... 59.3 1e-06 gi|312278327|gb|ADQ62984.1| Putative uncharacterized protein [St... 57.4 4e-06 gi|339278119|emb|CCC19867.1| hypothetical protein STH8232_1168 [... 57.0 5e-06 gi|334308476|gb|EGL99462.1| CRISPR-associated protein Csm6 [Lact... 56.6 7e-06 gi|339278118|emb|CCC19866.1| hypothetical protein STH8232_1167 [... 56.6 8e-06 gi|227890800|ref|ZP_04008605.1| conserved hypothetical protein [... 55.8 1e-05 gi|325687525|gb|EGD29546.1| hypothetical protein HMPREF9381_1059... 55.5 1e-05 gi|55822919|ref|YP_141360.1| hypothetical protein str0965 [Strep... 50.4 5e-04 gi|55821001|ref|YP_139443.1| hypothetical protein stu0966 [Strep... 46.6 0.007 gi|301299687|ref|ZP_07205941.1| putative CRISPR-associated prote... 44.3 0.034 gi|325696574|gb|EGD38464.1| hypothetical protein HMPREF9384_1721... 42.0 0.18 >gi|15842359|ref|NP_337396.1| hypothetical protein MT2885 [Mycobacterium tuberculosis CDC1551] gi|13882657|gb|AAK47210.1| hypothetical protein MT2885 [Mycobacterium tuberculosis CDC1551] Length=430 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/382 (100%), Positives = 382/382 (100%), Gaps = 0/382 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 49 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 108 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 109 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 168 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 169 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 228 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 229 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 288 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 289 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 348 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA Sbjct 349 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 408 Query 361 DLTLYDRLNDEIIRQIDMAPLG 382 DLTLYDRLNDEIIRQIDMAPLG Sbjct 409 DLTLYDRLNDEIIRQIDMAPLG 430 >gi|323718575|gb|EGB27742.1| csm6 family CRISPR-associated protein [Mycobacterium tuberculosis CDC1551A] Length=424 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/382 (100%), Positives = 382/382 (100%), Gaps = 0/382 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 43 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 102 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 103 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 162 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 163 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 222 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 223 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 282 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 283 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 342 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA Sbjct 343 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 402 Query 361 DLTLYDRLNDEIIRQIDMAPLG 382 DLTLYDRLNDEIIRQIDMAPLG Sbjct 403 DLTLYDRLNDEIIRQIDMAPLG 424 >gi|15609955|ref|NP_217334.1| hypothetical protein Rv2818c [Mycobacterium tuberculosis H37Rv] gi|148662660|ref|YP_001284183.1| hypothetical protein MRA_2842 [Mycobacterium tuberculosis H37Ra] gi|289444367|ref|ZP_06434111.1| csm6 family CRISPR-associated protein [Mycobacterium tuberculosis T46] 12 more sequence titles Length=382 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/382 (99%), Positives = 382/382 (100%), Gaps = 0/382 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +LFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 1 MLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA Sbjct 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 Query 361 DLTLYDRLNDEIIRQIDMAPLG 382 DLTLYDRLNDEIIRQIDMAPLG Sbjct 361 DLTLYDRLNDEIIRQIDMAPLG 382 >gi|148824007|ref|YP_001288761.1| hypothetical protein TBFG_12832 [Mycobacterium tuberculosis F11] gi|167968188|ref|ZP_02550465.1| hypothetical protein MtubH3_09199 [Mycobacterium tuberculosis H37Ra] gi|253798097|ref|YP_003031098.1| hypothetical protein TBMG_01155 [Mycobacterium tuberculosis KZN 1435] 21 more sequence titles Length=415 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/382 (100%), Positives = 382/382 (100%), Gaps = 0/382 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 34 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 94 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 153 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 154 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 213 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 214 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 273 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 274 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 333 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA Sbjct 334 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 393 Query 361 DLTLYDRLNDEIIRQIDMAPLG 382 DLTLYDRLNDEIIRQIDMAPLG Sbjct 394 DLTLYDRLNDEIIRQIDMAPLG 415 >gi|289448479|ref|ZP_06438223.1| csm6 family CRISPR-associated protein [Mycobacterium tuberculosis CPHL_A] gi|289421437|gb|EFD18638.1| csm6 family CRISPR-associated protein [Mycobacterium tuberculosis CPHL_A] Length=382 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/382 (99%), Positives = 381/382 (99%), Gaps = 0/382 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +LFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 1 MLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLK LARETGA Sbjct 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKSLARETGA 360 Query 361 DLTLYDRLNDEIIRQIDMAPLG 382 DLTLYDRLNDEIIRQIDMAPLG Sbjct 361 DLTLYDRLNDEIIRQIDMAPLG 382 >gi|340627814|ref|YP_004746266.1| hypothetical protein MCAN_28421 [Mycobacterium canettii CIPT 140010059] gi|340006004|emb|CCC45173.1| hypothetical protein MCAN_28421 [Mycobacterium canettii CIPT 140010059] Length=382 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/382 (94%), Positives = 369/382 (97%), Gaps = 0/382 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +LFLSAEIAAFENADRRYSAAITRLAPETDVR V +T+PSVHRFDLFVP+FR+HL +LS+ Sbjct 1 MLFLSAEIAAFENADRRYSAAITRLAPETDVRAVIHTDPSVHRFDLFVPIFRDHLAQLSS 60 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPD TILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARA SKPGDRESPD YDLE Sbjct 61 EFPDTTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARASSKPGDRESPDTYDLE 120 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDN+P A NRCFE TSAALGALLERANLKQLI SYDYSAAVTIAADSRLPD VS Sbjct 121 LMWDANDDNEPAASNRCFETTSAALGALLERANLKQLIASYDYSAAVTIAADSRLPDHVS 180 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAP+FFK T FTYDPANKVAEY+SALALLAKREQWAEFAR+ATPA Sbjct 181 NLIRGAMHRSRLEHLVAPRFFKGTVFTYDPANKVAEYVSALALLAKREQWAEFARAATPA 240 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA Sbjct 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETGA 360 Query 361 DLTLYDRLNDEIIRQIDMAPLG 382 DLTLYDRLNDEIIRQIDMAPLG Sbjct 361 DLTLYDRLNDEIIRQIDMAPLG 382 >gi|298526287|ref|ZP_07013696.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298496081|gb|EFI31375.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=384 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/342 (99%), Positives = 341/342 (99%), Gaps = 0/342 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 14 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 73 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 74 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 133 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 134 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 193 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 194 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 253 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 254 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 313 Query 301 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKD 342 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRIT + Sbjct 314 LLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITMN 355 >gi|31793994|ref|NP_856487.1| hypothetical protein Mb2842c [Mycobacterium bovis AF2122/97] gi|289575518|ref|ZP_06455745.1| csm6 family CRISPR-associated protein [Mycobacterium tuberculosis K85] gi|31619588|emb|CAD95027.1| HYPOTHETICAL PROTEIN [FIRST PART] [Mycobacterium bovis AF2122/97] gi|289539949|gb|EFD44527.1| csm6 family CRISPR-associated protein [Mycobacterium tuberculosis K85] Length=303 Score = 615 bits (1587), Expect = 3e-174, Method: Compositional matrix adjust. Identities = 302/303 (99%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +LFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 1 MLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 Query 301 LLR 303 LLR Sbjct 301 LLR 303 >gi|121638697|ref|YP_978921.1| hypothetical protein BCG_2837c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991189|ref|YP_002645878.1| hypothetical protein JTY_2831 [Mycobacterium bovis BCG str. Tokyo 172] gi|121494345|emb|CAL72825.1| Hypothetical protein BCG_2837c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774304|dbj|BAH27110.1| hypothetical protein JTY_2831 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602735|emb|CCC65413.1| hypothetical protein BCGM_2820c [Mycobacterium bovis BCG str. Moreau RDJ] Length=336 Score = 615 bits (1587), Expect = 3e-174, Method: Compositional matrix adjust. Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 34 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 94 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 153 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS Sbjct 154 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 213 Query 181 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 240 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA Sbjct 214 NLIRGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPA 273 Query 241 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 300 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA Sbjct 274 ITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLA 333 Query 301 LLR 303 LLR Sbjct 334 LLR 336 >gi|306781001|ref|ZP_07419338.1| CRISPR-associated protein, Csm6 family [Mycobacterium tuberculosis SUMu002] gi|306785636|ref|ZP_07423958.1| cutinase cut1 [Mycobacterium tuberculosis SUMu003] gi|306789676|ref|ZP_07427998.1| cutinase cut1 [Mycobacterium tuberculosis SUMu004] 9 more sequence titles Length=242 Score = 478 bits (1230), Expect = 7e-133, Method: Compositional matrix adjust. Identities = 236/238 (99%), Positives = 236/238 (99%), Gaps = 0/238 (0%) Query 145 LGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVSNLIRGAMHRSRLEHLVAPKFFKDT 204 ALLERANLKQLIVSYDYSAAVTIAADSRLPDQVSNLIRGAMHRSRLEHLVAPKFFKDT Sbjct 5 FSALLERANLKQLIVSYDYSAAVTIAADSRLPDQVSNLIRGAMHRSRLEHLVAPKFFKDT 64 Query 205 AFTYDPANKVAEYISALALLAKREQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGR 264 AFTYDPANKVAEYISALALLAKREQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGR Sbjct 65 AFTYDPANKVAEYISALALLAKREQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGR 124 Query 265 VDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFESRVR 324 VDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFESRVR Sbjct 125 VDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFESRVR 184 Query 325 NTAAHEIVSISEDRITKDGGLLPEQLLKILARETGADLTLYDRLNDEIIRQIDMAPLG 382 NTAAHEIVSISEDRITKDGGLLPEQLLKILARETGADLTLYDRLNDEIIRQIDMAPLG Sbjct 185 NTAAHEIVSISEDRITKDGGLLPEQLLKILARETGADLTLYDRLNDEIIRQIDMAPLG 242 >gi|308371143|ref|ZP_07423964.2| hypothetical protein TMCG_02062 [Mycobacterium tuberculosis SUMu003] gi|308329699|gb|EFP18550.1| hypothetical protein TMCG_02062 [Mycobacterium tuberculosis SUMu003] Length=206 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 49 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 108 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 109 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 168 Query 121 LMWDANDDNQPGAPNRCFEATSAALG 146 LMWDANDDNQPGAPNRCFEATSAALG Sbjct 169 LMWDANDDNQPGAPNRCFEATSAALG 194 >gi|306781005|ref|ZP_07419342.1| hypothetical protein TMBG_02955 [Mycobacterium tuberculosis SUMu002] gi|306789682|ref|ZP_07428004.1| hypothetical protein TMDG_00002 [Mycobacterium tuberculosis SUMu004] gi|306794315|ref|ZP_07432617.1| hypothetical protein TMEG_03957 [Mycobacterium tuberculosis SUMu005] 11 more sequence titles Length=191 Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA Sbjct 34 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE Sbjct 94 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 153 Query 121 LMWDANDDNQPGAPNRCFEATSAALG 146 LMWDANDDNQPGAPNRCFEATSAALG Sbjct 154 LMWDANDDNQPGAPNRCFEATSAALG 179 >gi|298525991|ref|ZP_07013400.1| predicted protein [Mycobacterium tuberculosis 94_M4241A] gi|298495785|gb|EFI31079.1| predicted protein [Mycobacterium tuberculosis 94_M4241A] Length=110 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/81 (98%), Positives = 80/81 (99%), Gaps = 0/81 (0%) Query 262 MGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFES 321 MGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFES Sbjct 1 MGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFES 60 Query 322 RVRNTAAHEIVSISEDRITKD 342 RVRNTAAHEIVSISEDRIT + Sbjct 61 RVRNTAAHEIVSISEDRITMN 81 >gi|315925049|ref|ZP_07921266.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621948|gb|EFV01912.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length=469 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 123/433 (29%), Positives = 197/433 (46%), Gaps = 61/433 (14%) Query 1 VLFLSAEIAAFENADRRYSAAITRLA-------PETDVRIVTYTNPSVHRFDLFVPVFRN 53 +L+LSAE+ F D RY + +LA PE ++ I +V FD+F F Sbjct 39 ILYLSAEMMEFHEKDDRYMYCLEKLARLQNRAMPEIEI-IERPELRNVQYFDIFFDEFWE 97 Query 54 HLVELSAEF-PDRTILLNTSSGTPAMQAAL-VAINVFGIPRTT-AVQVSTPARALSKPGD 110 + +++ E D +LLN SSGTPAM++ L V + G R T +QV TP + +++ Sbjct 98 KISQITDEMAEDDELLLNVSSGTPAMKSGLEVLQTIRGFSRKTRLIQVDTPTKKMNE--- 154 Query 111 RESPDAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIA 170 + + +D+EL W+ + DN P NRC E +L + + +KQL+ YDY AA+ +A Sbjct 155 -HAHEGFDVELAWEVDVDNAPDFKNRCHEFECRSLKNIQDEEIIKQLVKDYDYRAAMAVA 213 Query 171 ADSRLPDQVS-NLIRGAMHRSRLEHLVAPKFFKDTAFTYDP-----ANKVAEYISALALL 224 D PD + ++ A R L+ K K T P A K EY L + Sbjct 214 KDMPEPDPAYLDKLKLARARQLLDFSTVTKLEKKTGMDVTPVKSGDARKSFEYALLLWIK 273 Query 225 AKREQWAEFARSATPAIT----IVLRAAVAKHLPEDRYLDDMGRVDRR------------ 268 R ++ +F R+ TP I +LR + + Y D G V R+ Sbjct 274 KDRREYVDFCRALTPLIVDLFEQILRCQCKIDINQYVYGDFPGWVRRKCEEEGWNEEERE 333 Query 269 --------------KLEREPEIRCALKHPPKSPNAEWYLYTKDWLALLRQFAPDRV--GA 312 +L+++ +I + S A + + L L+ +F +R A Sbjct 334 KRFRGAKICKWHKGRLKQDEKIFSVFQKAYSSGVANRNISSDHLLKLIEEFCKNRAIRDA 393 Query 313 LEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARETG--------ADLTL 364 + + E +RN +AHE+VS++ED I GL +++LK++ R G AD Sbjct 394 AKQIREVEEAIRNDSAHEMVSVTEDVIEHRTGLTTDEILKLIKRLFGYTGYGIKEADWHS 453 Query 365 YDRLNDEIIRQID 377 Y +N EI++ ID Sbjct 454 YQAMNQEIVQAID 466 >gi|257413192|ref|ZP_04742265.2| CRISPR-associated protein, Csm6 family [Roseburia intestinalis L1-82] gi|257204342|gb|EEV02627.1| CRISPR-associated protein, Csm6 family [Roseburia intestinalis L1-82] Length=451 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 121/413 (30%), Positives = 190/413 (47%), Gaps = 44/413 (10%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTN------PSVHRFDLFVPVFRNH 54 +L++S E+ F+ D RY + RLA D R + Y VH FD F FR Sbjct 43 ILYMSKEMLDFQEKDDRYRYCLDRLAKMQD-RPMIYEIIERRELTKVHEFDYFYEDFRKV 101 Query 55 LVELSAEFPDR-TILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRES 113 + + D T+LLN SSGTPAM++ L+ + G +QV+TP L++ + Sbjct 102 ISHIYETMDDSDTLLLNVSSGTPAMKSGLLVLQTLGEFPAKVIQVATPVGKLNE----QV 157 Query 114 PDAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADS 173 + YD+E +W+ ++DNQ GA NRC E L + + +K+ I+ YDY AA+ + ADS Sbjct 158 HEGYDVETLWELDEDNQEGAQNRCKEIQCPTLSKIKKEEIIKKHILVYDYQAALDV-ADS 216 Query 174 RLPD----QVSNLIRGAMHRSRLEHLVAPKFFKDTAFT-----YDPANKVAEYISALALL 224 LP Q +LI A R L+ + K + T F Y K EY + + Sbjct 217 -LPAEQTVQYRDLIYQAARRVLLDFVNVDKTIQKTNFQCLPVRYSSQRKYFEYALTIDIR 275 Query 225 AKREQWAEFARSATPAITIVLRAAVAKH--LPEDRYLDDMGRVDR-------RKLEREPE 275 KR ++ +F RS TP + + + K + D Y D R + +KL Sbjct 276 LKRGEYVDFIRSITPIVVDLFEMILKKQCGIIVDDYCDQYKRAGQWKRMWSAKKLNGTEV 335 Query 276 IRCALKHPPKSPN--AEWYLYTKDWLALLRQFAPD-RVGAL-EVLGRFESRVRNTAAHEI 331 + H K +Y++ L F+ D R+ L E L ES +RN AAHEI Sbjct 336 GKVLNSHYQKMEKRFEAKDVYSEHLKILTDHFSSDTRLKQLMEDLRNVESNIRNLAAHEI 395 Query 332 VSISEDRITKDGGLLPEQLLKILARETG-ADLTL-------YDRLNDEIIRQI 376 VS++++ I G ++ + G ++++ YD +N +I+ Q+ Sbjct 396 VSVTDETIKNLTGFYGRDIMSKIKELFGYTEISIRKGYWDSYDEMNRKILEQM 448 >gi|224543479|ref|ZP_03684018.1| hypothetical protein CATMIT_02688 [Catenibacterium mitsuokai DSM 15897] gi|224523606|gb|EEF92711.1| hypothetical protein CATMIT_02688 [Catenibacterium mitsuokai DSM 15897] Length=445 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 112/413 (28%), Positives = 191/413 (47%), Gaps = 42/413 (10%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAP----ETDVRIVTYTN-PSVHRFDLFVPVFRNHL 55 +L+LS E+A + Y I +LA DV + V FD F FRN L Sbjct 39 ILYLSKEMAEKHHKYNPYGYCIEKLAELQSRHIDVEYIERNELTKVQEFDYFYKDFRNIL 98 Query 56 VELSAEF-PDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESP 114 +++ + D LLN SSGTPAM++ LV + G +QV TP L++ +E+ Sbjct 99 MDIMGDMDEDDEFLLNISSGTPAMKSGLVVLKTLGELPCRTIQVVTPTGKLNEHSHKEN- 157 Query 115 DAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIA---A 171 D E +W+ ++DN P + NRC E L + + +K+ I +YDYSAA+ +A Sbjct 158 ---DYETLWELDEDNNPDSANRCIEVECPTLAIIKKEEIIKKHIEAYDYSAALQVAKTIK 214 Query 172 DSRLPDQVSNLIRGAMHRSRLEHLVAPKF-FKDTAFTY----DPANKVAEYISALALLAK 226 S + +LI A +R L++ A + K+ + + D K+ EY + + + Sbjct 215 KSAMDKGYYSLIEMAKYRESLDYKKALEISSKEKVYCFPVTDDKGIKLFEYALNIDVKRR 274 Query 227 REQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGRVDRRK--------LER--EPEI 276 R ++A+F RS TP + + D ++ R++++K LE+ ++ Sbjct 275 RHEYADFIRSITPLFVDLFELVLKHETGID--INKYCRIEKKKKHSMRVWDLEKLNGSDV 332 Query 277 RCALKHPPKSPNAEWYLYTKDWLALLRQFAP-DRVGALEV---LGRFESRVRNTAAHEIV 332 +L + + E +Y++ + LL F P R A ++ L E +RN AHE+V Sbjct 333 LKSLNNYYLNGFKEGPIYSEPLVVLLNDFIPSSRKEAADLVSDLRSVEGNIRNITAHEMV 392 Query 333 SISEDRITKDGGLLPEQLLKILARE-TGADLTL-------YDRLNDEIIRQID 377 +++D I ++K + + + DL + YD +N II +ID Sbjct 393 CVTDDVIKDKTNFSSNAIMKKIEKVFSYTDLDIKDEYWNSYDLMNQLIIERID 445 >gi|296133515|ref|YP_003640762.1| CRISPR-associated protein Csm6 [Thermincola sp. JR] gi|296032093|gb|ADG82861.1| CRISPR-associated protein Csm6 [Thermincola potens JR] Length=460 Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 123/428 (29%), Positives = 188/428 (44%), Gaps = 70/428 (16%) Query 2 LFLSAEIAAFENADRRYSAAITRLAPE----TDVRIVTYTNPSVHRFDLFVPVFRNHLVE 57 +F S E+ E DRR++ A+ L+ E D ++ + H FD F+ VF HL E Sbjct 38 IFFSGEMGRREEKDRRFTRAVDLLSRELSWPIDKHLIFSGIQNPHDFDAFIGVFSKHLEE 97 Query 58 LSAEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTP-ARA-LSKPGDRESPD 115 +S + P+ TILLN SSGTP M + L V R VQV TP ARA LSK G PD Sbjct 98 ISKDHPEATILLNVSSGTPQMMSMLCLETVVSSKRLVPVQVITPAARANLSKMG---GPD 154 Query 116 AYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRL 175 YD+E + N DN+P APNRC + + L R + L+ +Y+Y A I L Sbjct 155 -YDVEWEFGNNLDNEPDAPNRCVQPDIQSFKRALARGQVTALLENYNYEGAALILGGYGL 213 Query 176 P--DQVSNLIRGAMHRSRLEHLVAPKFFKDT-AFTYDP-----ANKVAEYISALALLAKR 227 V L+R A+ L+ F++ A T P ++ EY + + LL + Sbjct 214 GTDSTVMGLLRFAIALKNLDSDAKGSQFQEARALTGYPQMDWECLEICEYCNVVKLLQRT 273 Query 228 EQWAEFARSATPAITIVLRAAVAKH--------LPEDRYL----DDMGRVDRRKLERE-- 273 Q A+F P +T L+ K+ + E+R+ + G+ R + R+ Sbjct 274 GQLADFLLRLNPLVT-ELQTKFLKYCLGFAVEAIIEERHCAGRKNTAGKFTERLVRRDKI 332 Query 274 ----PEIRCALKHPPKSPNAEW----------------YLYTKDWLALLRQFAPDRVGAL 313 PE+ L + + N E+ + K+ + R FA + + Sbjct 333 RALNPEL---LAYLDECHNGEYRDGSHVNIRMQNCLINFFLRKNPDSQTRSFA-GFLDTM 388 Query 314 EVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKIL---------ARETGADLTL 364 E+L +R RN AAH + + E+ I + GL Q++ L R T+ Sbjct 389 EIL----NRDRNLAAHNLYGVLEEDIKQRSGLTGGQIVDKLENLIKFIFKGRCKPEIFTI 444 Query 365 YDRLNDEI 372 +D +N+ I Sbjct 445 FDTVNNVI 452 >gi|331004045|ref|ZP_08327527.1| hypothetical protein HMPREF0491_02389 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411631|gb|EGG91039.1| hypothetical protein HMPREF0491_02389 [Lachnospiraceae oral taxon 107 str. F0167] Length=462 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 113/419 (27%), Positives = 183/419 (44%), Gaps = 48/419 (11%) Query 2 LFLSAEIAAFENADRRYSAAITRLAPETD-----VRIVTYTNPSVHRFDLFVPVFRNHLV 56 L+++ EI D RY I +LA + + V I +V +D F+ F + Sbjct 38 LYMTKEIYEKHEKDDRYRFFINKLAEQKNKEIESVIIADKERDNVQEYDPFLFKFEEEIN 97 Query 57 ELSAEF-PDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPD 115 + E D +N SSGTPAM+ ALV + +QVSTP + K + Sbjct 98 NIINELNDDDNFFINISSGTPAMKNALVILQDLNEYNCKFIQVSTP---IKKMNEHTHGK 154 Query 116 AYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRL 175 +LELMW+ N + + NRC E+ +L L + +K+ I YDY AA+++A D Sbjct 155 VLELELMWEMNMELEKEGNNRCVESKCPSLSRLRKEEIIKKHIDEYDYRAALSVAGDME- 213 Query 176 PDQVSNLIR---GAMHRSRLEHLVAPKFFKDTAFTYDP-----ANKVAEYISALALLAKR 227 + N I A++R L +K F P A K+ EY L + KR Sbjct 214 KNSTKNYIDELLSAVNRYNLNMKKVDNEYKKEGFDITPVKAGDARKLFEYALWLNIKVKR 273 Query 228 EQWAEFARSATPAIT----IVLRA----AVAKHLPEDRY---LDDMGRVDRRKLEREPEI 276 E++ +F R TP + +VL+ + K+ + Y + D G++ + ++ I Sbjct 274 EEYIDFVRGITPIVVELFEVVLKGRGKLDINKYCTLNGYKVRVWDTGKIAKNIPGKDTNI 333 Query 277 R------CALKHPPKSPNAEW---YLYTKDWLALLRQFAPDRV--GALEVLGRFESRVRN 325 + +KH K E+ +Y++ L L++ D V + E +VRN Sbjct 334 KDIVNKEYKIKHSDKDKVEEFRFGMIYSEALLYLIKNLIDDEVLFDIASNIRTVEEKVRN 393 Query 326 TAAHEIVSISEDRITKDGGLLPEQLL---KILARETGADLT-----LYDRLNDEIIRQI 376 AAH+IV++ + I G P Q++ K L T + YD +N E+ R+I Sbjct 394 LAAHDIVALDSNDIKNRTGFTPVQIMDKIKKLFNYTNFGIKPEYWDSYDDMNKELKRRI 452 >gi|292669136|ref|ZP_06602562.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292649188|gb|EFF67160.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length=459 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 109/414 (27%), Positives = 184/414 (45%), Gaps = 49/414 (11%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTN-PSVHRFDLFVPVFRNHLVELS 59 VLF + E+ E ++RY+ A+ +AP+ + +T+ R++ F + + +L Sbjct 41 VLFFTKEMGEIERNEKRYTTAVRYVAPDCIIDPPIFTDIVDASRYEEFSQILPQTVQDLL 100 Query 60 AEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDL 119 ++P+ ILLN SSGTP ++ L + R +Q TP R + P + +P+ +L Sbjct 101 QKYPEHEILLNLSSGTPQIKTILAMLAADN-ERCIGIQTVTPERRANNP-QKITPE--EL 156 Query 120 ELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRL-PDQ 178 + M N+DN+PGA RC E E+ + LI SY+Y+AA+T+A +SRL P Sbjct 157 QSMLQMNEDNKPGAVRRCDEPPLKIFRYHAEKNRILALIHSYEYNAALTLARNSRLVPTD 216 Query 179 VSNLIRGAMHRSRL----EHLVAPKFFKDTAFTY-DPANKVAEYISALALLAKREQWAEF 233 L++ A R+ L + P++ F + + ++ EY + + + E+ + F Sbjct 217 AKTLLKHAAARTMLLPDKARKILPEYNGQKLFLFKEDEERIVEYFLVMQIDQENERLSNF 276 Query 234 ARSATPAITIVLRAAVAKHLPEDR-------------YLDDMGRVDRRKLEREP-EIRCA 279 TP + L VAK++ R Y D + R+K+E+ Sbjct 277 MLRITPFLYEFLHDYVAKNVKGGRKNAQHIDNLCIKKYNTDGYILQRKKIEKNARNFLDL 336 Query 280 LKHPPKSPNAEWYLYTK-DWLALLR--------------QFAPDRVGALEVLGRFESRVR 324 L NA Y T +L L+ Q D + L LG +VR Sbjct 337 LDQEFAGSNAHQYTNTDLSFLLLIHYCTYMQEAGLAKDAQLHSDMMDELGKLGTVR-KVR 395 Query 325 NTAAHEIVSISEDRITKDGGLLPEQLL----KILARETGADL----TLYDRLND 370 N+ AH IV+++ + KD + P L+ K+L G + T Y R+N+ Sbjct 396 NSVAHVIVNVTRESFQKDTQMTPPALMDTFAKMLTLVYGTKVKEARTTYSRINN 449 >gi|253578032|ref|ZP_04855304.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850350|gb|EES78308.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length=438 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 107/406 (27%), Positives = 185/406 (46%), Gaps = 37/406 (9%) Query 2 LFLSAEIAAFENADRRYSAAITRLAP----ETDVRIVTYTNP-SVHRFDLFVPVFRNHLV 56 L+LS E+ D RY + L + ++ I+ ++ V ++D+F F + Sbjct 38 LYLSKEMMENHKKDNRYVKTLELLGEFLHHKFEIHIIENSDMIDVQQYDIFYNEFHRIIA 97 Query 57 ELSAE-FPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPD 115 E+ + P+ +L+N +SGTPAM++AL+ + R +QVSTP + + E D Sbjct 98 EIEEQKGPEDILLVNMASGTPAMKSALLVMATLSEYRFLPIQVSTPQK--KSNLEHEERD 155 Query 116 AYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR- 174 YD++ W+ N DN+ A NRC E L LL+ +K+ +++YDY AA+ + + + Sbjct 156 EYDVDANWELNMDNEEAAENRCQEVKCLNLMRLLKIDMIKKHLLAYDYHAALAVGKEIKE 215 Query 175 -LPDQVSNLIRGAMHRSRLEHLVAPKFFKD-----TAFTYDPANKVA-EYISALALLAKR 227 L + A RS L+ + + TA + KV EY+ AL L KR Sbjct 216 DLSPVAYQWLETADARSLLDWTRMNRVLPENNGIITAVRGENEKKVLFEYMLALDLKVKR 275 Query 228 EQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALKHPPKSP 287 ++A+F R+ TP +L + + D+ R +R +R + + Sbjct 276 GEYADFIRAITPLGVDLLEIVLEQSCD-----IDITRYYKRNNQRIWDKNRLVGEILDIL 330 Query 288 NAEWY------LYTKDWLALLRQFAPD--RVGALEVLGRFESRVRNTAAHEIVSISEDRI 339 N ++Y +Y+ L ++++ D V ++ L E VRN AAH IVS++ + I Sbjct 331 NQKFYPFRYGPVYSAHLLEIIQKKCTDTLMVQRIQELVNIEQNVRNVAAHNIVSVTPEWI 390 Query 340 TKDGGLLPEQLLKILA--------RETGADLTLYDRLNDEIIRQID 377 + G + +L IL + YD +N II ++D Sbjct 391 KERTGKSVDDILWILKYVCEQVKINTRKENWNSYDSMNKRIINELD 436 >gi|291460043|ref|ZP_06599433.1| CRISPR-associated protein, Csm6 family [Oribacterium sp. oral taxon 078 str. F0262] gi|291417384|gb|EFE91103.1| CRISPR-associated protein, Csm6 family [Oribacterium sp. oral taxon 078 str. F0262] Length=434 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 110/422 (27%), Positives = 196/422 (47%), Gaps = 54/422 (12%) Query 2 LFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYT---NPS---VHRFDLFVPVFRNHL 55 L++S EI ++ AD RY+ + +L E R + Y P V F++F F+ + Sbjct 20 LYMSREIIQYQEADERYTYCLKKLG-ELQNREIEYELIRRPELVEVQDFEIFYREFKEEI 78 Query 56 VELSAEF-PDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESP 114 ++ E D ++LN SSGTPAM++ L+ I AVQV TP RA+++ ++ Sbjct 79 DKIRKEMGEDDELILNLSSGTPAMKSWLLVIRTMNELSCKAVQVVTPDRAMNEHRHKD-- 136 Query 115 DAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR 174 Y ++ +W+ + DN+ GA NRC E +L + + N+++LI YDY AA+ +AA+ + Sbjct 137 --YQVKELWELDPDNEGGAENRCREVPCPSLSRVRQEVNIRKLIREYDYHAALELAAELK 194 Query 175 LPDQ-VSNLIRGAMHRSRLEHLVAPKFFKDTAFT--------YDPANKVAEYISALALLA 225 ++ LIR A R L+ K + + EY + + Sbjct 195 DHEKPYMKLIRVAEERELLDMDAVEKKLETNHLKGLYRLPIRKGEKRDIFEYALVMQIRL 254 Query 226 KREQWAEFARSATPAITIVLRAAVAK-HLPEDRYL---DDMGRVDRRKLERE---PEIRC 278 +R ++A+F R+ +P + + + + K + + Y+ + DR KL + EI Sbjct 255 RRGEYADFIRAISPILYRLYKRIMKKLGICLEEYVSGTETKTVWDREKLSGDMAGKEILK 314 Query 279 ALKHPPKSPNAEWY--LYTKDWLALLRQFAPDR-----VGALEVLGRFESRVRNTAAHEI 331 L+ KS + + +Y +++ + D+ VG L E +VRN AAH+I Sbjct 315 ILEGAYKSGDGFRFGNVYPVHMQKIIQAKSDDKELKKLVGELR---EAEEKVRNQAAHQI 371 Query 332 VSISEDRI----------TKDGGLLPEQLLKILARETGADL------TLYDRLNDEIIRQ 375 VS+++ I +D + + + K + D+ YD++N+ IIR Sbjct 372 VSVNKKTIREWMEKEGCKDRDAEWIMDGIKKAIGYAEIIDIANKEVWNSYDQMNEVIIRL 431 Query 376 ID 377 +D Sbjct 432 MD 433 >gi|323141543|ref|ZP_08076429.1| putative CRISPR-associated protein, Csm6 family [Phascolarctobacterium sp. YIT 12067] gi|322414002|gb|EFY04835.1| CRISPR-associated protein, Csm6 family [Phascolarctobacterium sp. YIT 12067] Length=437 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 107/403 (27%), Positives = 186/403 (47%), Gaps = 32/403 (7%) Query 2 LFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSAE 61 +FLSAE++A E YS AI PE + +V + VP+ L EL E Sbjct 36 IFLSAEMSAKEKNRHIYSKAIEYNVPECKFDFIYTDIVNVQLMEELVPLAEGFL-ELRKE 94 Query 62 FPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLEL 121 FP+ ILLN SSGTP M+ + + A+QV +P RA ++ + D D+ + Sbjct 95 FPEEEILLNLSSGTPQMKTVMSFLAT-DFENVRAIQVDSPQRASNRTA-HATQDNEDINV 152 Query 122 MWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLP--DQV 179 + + N DN P RC EA + L R L LI +Y+Y AA+T+ +++ ++ Sbjct 153 VIENNFDNVPDYTCRCHEAPLSLLRRYSIRHQLISLINNYEYRAALTMYNKNKIMFVEET 212 Query 180 SNLIRGAMHRSRLEHLVAPKF---FKDTAFTYDPANKVAEYISALALLAKREQWAEFARS 236 NL+R A RS+L L+ F K+ + + K+ E++ + L ++ + AEF Sbjct 213 GNLLRHADLRSKL--LINEAFKGMGKENIYNNNSVKKLNEFLMVMELHQRKGELAEFIPK 270 Query 237 ATPAITIVLRAAVAKH--LPEDRYL------DDMGRVDRRKLERE-PEIRCALKHPPKSP 287 TP + +L H L +R+ + ++ KL +E P++ L + + Sbjct 271 LTPFLYELLLYYFENHVALKLERFCYRKRNNNSSWKISAEKLRKEAPDVFTYLNYYFRQG 330 Query 288 NAEWYLYTKDWLAL---LRQFAPDRVGALEVLGRFESRVRNTAAHEIVS-ISEDRITK-D 342 + L + L + L+ + +G L++L E RN AH I++ ++E+ + + Sbjct 331 FRDTDLSFSNMLLILESLKSVKTELMGELQILREVEKNQRNKIAHTILTDVTEENLQAIE 390 Query 343 GGLLPEQLLK--------ILARETGADLTLYDRLNDEIIRQID 377 L Q+++ I+ E+ +YD LN I+ ++ Sbjct 391 PKLSSYQIIQHLRKAFLLIMEGESICKRNVYDDLNRRIVDSLN 433 >gi|341822667|emb|CCC73591.1| putative uncharacterized protein [Megasphaera elsdenii DSM 20460] Length=450 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 100/388 (26%), Positives = 164/388 (43%), Gaps = 46/388 (11%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VL+ +AE+ E Y+ I + P V + H +D ++ H+++L Sbjct 35 VLYFTAEMEKRERNTHMYTLGIEHVQPGCPVESLYSGIVDAHLYDAYLHDLPGHVLKLHQ 94 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 +P+ ILLN SSGTP ++ L AI +QV++P S + D D+E Sbjct 95 IYPEAEILLNLSSGTPQIKVVL-AIMSTEYAWCRGIQVASPEHR-SNTNNIPVQDEEDVE 152 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR-LPDQV 179 M N+D++P APNRC E L E+ + L+ Y+Y A S + Q Sbjct 153 EMLACNEDDEPDAPNRCEEPHLEILRFYREKYEIMSLVNQYEYMGAWAFCKGSHTISAQT 212 Query 180 SNLIRGAMHRSRLE----HLVAPKFFKDTAFTYD-PANKVAEYISALALLAKREQWAEFA 234 LI+ AM+RS L+ + K+ F ++ + EY+ + + +++Q+A F Sbjct 213 KKLIQFAMYRSDLQTKAAQQIMRKYHGQALFPFEREGESLTEYLLTMQIHKEKKQYASFM 272 Query 235 RSATPAIT--IVLRAAVAKHLPEDRYLDDMGRVDRRKLERE--------PEIRCALKHPP 284 +P + V A + +P Y + + RR L R+ PE+ L H Sbjct 273 VQISPFLYELFVTYAKMNLKIPLLNYREKVA--GRRILRRQTLLQKPQGPELIAYLDHVW 330 Query 285 KSPNAEWYLYTKDW-LALLRQ---FAPDRVGALEVLGRFE-----------------SRV 323 P Y + LL Q FA GA + E ++ Sbjct 331 PQP-----FYDSELSFILLYQVFCFAEQFDGAKDAEKHHEFMTDPLMNSANPYMDKLRKL 385 Query 324 RNTAAHEIVSISEDRITKDGGLLPEQLL 351 RN AHEI++++E+ I K GL P+ ++ Sbjct 386 RNNTAHEIINVTEETIQKRTGLTPDDIM 413 >gi|238018272|ref|ZP_04598698.1| hypothetical protein VEIDISOL_00096 [Veillonella dispar ATCC 17748] gi|237864743|gb|EEP66033.1| hypothetical protein VEIDISOL_00096 [Veillonella dispar ATCC 17748] Length=439 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 107/417 (26%), Positives = 185/417 (45%), Gaps = 54/417 (12%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +L LS ++ E A+ R++ A+ + + D++I+ VHR D+ P F +H E + Sbjct 35 ILVLSKDMEQKEAANHRFTKALKHVKADLDIKIIHTGLEDVHRIDVLQP-FVDHFYETLS 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESP---DAY 117 +PD IL+N SSGTP M+ + ++V +QV +P R +R P D Sbjct 94 TYPDAEILINLSSGTPQMKLIMSYLSVEH-DAVRGIQVDSPQRG----SNRSEPAVNDDE 148 Query 118 DLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQ----LIVSYDYSAAVTI---- 169 D+EL+ + N D+Q + NRC E ++R N+KQ LI SY Y A++ Sbjct 149 DIELVIENNFDDQEDSENRCHEPQM----GYIKRNNIKQSLHTLITSYKYKEAISSYHSY 204 Query 170 --AADSRLPDQVSNLIRGAMHRSRLEH---LVAPKFFKDTA----FTYDPANKVAEYISA 220 +S + + V L+ A R L + L + T+ FT K+ E++ Sbjct 205 KRTFESDVVNDVLPLLEHAQLRLGLNYDDALQKARKVGSTSLSSLFTDKELRKLHEFLML 264 Query 221 LALLAKREQWAEFARSATPAITIVLRAAVAKHLP------EDRYLDDMGRVDRRKLERE- 273 + + K+ Q +F TP + ++R K L E + M R+D + + Sbjct 265 MEVRLKQGQIEDFVLKTTPFMYELMRYYFTKELNVNWRQVEKKTSKGM-RLDMVAFKNQY 323 Query 274 PEIRCALKHPPKSPN-AEWYLYTKDWLALLRQFAPDRVGA-----LEVLGRFESRVRNTA 327 P++ + + +P E + L +L + D V + L+ + R E ++RN Sbjct 324 PKLYESWQENSDTPYLQELQVSFYHMLHMLEDY--DTVDSSLLKHLKEIRRIERKIRNKI 381 Query 328 AHEIVSISEDRITKDGGLLPEQLLK--------ILARETGADLTLYDRLNDEIIRQI 376 AHE+V +E I + Q I+AR+ + +YD +N ++ QI Sbjct 382 AHEVVVFTEQDICSAAEIQSLQFFLHQIKDVFFIIARQEKQNKLIYDTINKYVLDQI 438 >gi|303231923|ref|ZP_07318631.1| CRISPR-associated protein, Csm6 family [Veillonella atypica ACS-049-V-Sch6] gi|302513352|gb|EFL55386.1| CRISPR-associated protein, Csm6 family [Veillonella atypica ACS-049-V-Sch6] Length=439 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 102/417 (25%), Positives = 184/417 (45%), Gaps = 54/417 (12%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +L LS ++ E A+ R++ A+ + + D+ ++ VHR D P F +H E+ + Sbjct 35 ILVLSKDMEKKEAANHRFTKALKHVKADLDITLIHTGLEDVHRIDTLQP-FVDHFYEMLS 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 +PD IL+N SSGTP M+ + ++V +QV +P R S + D D++ Sbjct 94 NYPDAEILINLSSGTPQMKLIMSYLSVEH-DAVRGIQVDSPQRG-SNRSEAAVHDDEDID 151 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQ----LIVSYDYSAAVTIAADSR-- 174 ++ + N D+Q + NRC E ++R N+KQ LI SY Y A++ + Sbjct 152 IVIENNFDDQEDSENRCHEPQM----GYIKRNNIKQSLHTLITSYKYKEAISAYHSYKRS 207 Query 175 LPDQVSNLI---------------RGAMHRSRLEHLVAPKFFKDTAFTYDPANKVAEYIS 219 D V+N + GA+ +SR ++ + F K+ E++ Sbjct 208 FEDGVANDVLPLLEHAQLRLGLDYDGALQKSRKVGSISLS----SLFANKEVRKLHEFLM 263 Query 220 ALALLAKREQWAEFARSATPAITIVLRAAVAKHLPED-RYLDDMG----RVDRRKLERE- 273 + + K+ Q +F TP + ++R K L + R ++ R+D E++ Sbjct 264 LMEVRLKQGQIEDFILKTTPFMYELIRYYFTKELHVNWRQIEKKTSKGIRLDMVAFEKQY 323 Query 274 PEIRCALKHPPKSPN-AEWYLYTKDWLALLRQFAPDRVGA-----LEVLGRFESRVRNTA 327 P++ + K +P E L L +L + D V + L+ + R E ++RN Sbjct 324 PKLYKSWKANTHTPFLQELQLSFYHMLHMLEE--QDIVDSLLLKQLKEIRRIEQKIRNKM 381 Query 328 AHEIVSISEDRITKDGGLLPEQ--------LLKILARETGADLTLYDRLNDEIIRQI 376 AHE+V +E I K + Q + I+ + + +YD +N ++ QI Sbjct 382 AHEVVVFTEQDICKAAEIQSLQSFLHQIKDVFFIITGQAKQNKLIYDVINQYVLEQI 438 >gi|334126725|ref|ZP_08500673.1| hypothetical protein HMPREF9081_0260 [Centipeda periodontii DSM 2778] gi|333391135|gb|EGK62256.1| hypothetical protein HMPREF9081_0260 [Centipeda periodontii DSM 2778] Length=452 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 103/380 (28%), Positives = 172/380 (46%), Gaps = 28/380 (7%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLF + ++A E+ D RY+ AI R A + + + H ++ F + ++ L + Sbjct 45 VLFYTQDMAEKEHRDHRYTRAIHRTAFDCVIEEIFTDIQEAHLYESFSQILPQEVLRLRS 104 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 E ILLN SSGTP M+ L A+ + +QV+ P+R S + + DA D++ Sbjct 105 ENQGAQILLNLSSGTPQMKTVL-AMLAADMENCVGIQVAAPSRT-SNRANEATQDAEDID 162 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRL-PDQV 179 + + N D + GA NRC E ER+ ++ LI SY+Y+AA+ IA S L P + Sbjct 163 ALLENNFDEEEGAENRCDEPPLGIFRYYAERSRIRSLIESYEYAAALKIARRSPLVPPEA 222 Query 180 SNLIRGAMHRSRLEHLVAPKFFKD----TAFTY-DPANKVAEYISALALLAKREQWAEFA 234 S L+ A RS L A ++ F + ++ EY + + + + + Sbjct 223 SLLLSHAEQRSMLLTEEAKAILREYRGKKLFPFIGKTEELVEYFLMMQIDQETGRLSNLM 282 Query 235 RSATPAITIVLRAAVAKHLP-------EDRYLDDMGRVDRRKL-EREPEIRCALKHP--- 283 P + LR AK+L E R + + + R +L +E E+ AL+ Sbjct 283 LRMIPFLYEFLREYTAKNLTIPIRALCEPR--NGVRCLARERLAAQEKELLAALEREFPY 340 Query 284 --PKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFES-----RVRNTAAHEIVSISE 336 P + + L A Q D EV+ ES ++RN AAHE+V+++E Sbjct 341 GYRDQPLSFYLLSLCCAYAGKAQRVRDADLHAEVMAELESIADIRKLRNEAAHEMVNVTE 400 Query 337 DRITKDGGLLPEQLLKILAR 356 +R + G+ +++L R Sbjct 401 ERFRQKIGMGSQEVLSCFCR 420 >gi|342213924|ref|ZP_08706637.1| putative CRISPR type III-A/MTUBE-associated protein Csm6 [Veillonella sp. oral taxon 780 str. F0422] gi|341596422|gb|EGS39024.1| putative CRISPR type III-A/MTUBE-associated protein Csm6 [Veillonella sp. oral taxon 780 str. F0422] Length=449 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/372 (25%), Positives = 166/372 (45%), Gaps = 40/372 (10%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VLFLS E+ E +++Y+ AI+ + P+ VR++ VH+ D + + L Sbjct 35 VLFLSKEMVVEEERNQQYTKAISYVNPQCVVRLIKTELQEVHKIDALYSLV-DEFYRLKD 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 EF + L+N +SGTP M + + + T VQV TP S + +++ Sbjct 94 EFSEAEFLINLTSGTPQMCQLMTYLAIENTD-VTGVQVDTPTER-SNRTEHALQGNEEID 151 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVS----YDYSAAVTIAADSRL- 175 + + N DN+ G NRC E L +++R LK+ +S Y+Y A+ + ++ Sbjct 152 YVIECNFDNERGTKNRCHE----PLLQIVKRRFLKERCISLVKVYEYKQALQALKEYKML 207 Query 176 --------PDQVSNLIRGAMHRSRLEH----LVAPKFFKDTAFTYDPANKV-----AEYI 218 D + L++ +M+RS E+ PK K T P++K+ EY+ Sbjct 208 AEEEDKEYLDVIGKLLQHSMYRSAFEYDTSLTYIPKELKQTLTHSMPSSKIDIRNLIEYL 267 Query 219 SALALLAKREQWAEFARSATPAITIVLRAAVA-KHLPEDRYLDDMGR---VDRRKLERE- 273 + ++ + +F TP + ++ + + R ++ GR VDR KL +E Sbjct 268 YIAQIRIEKGMYQDFIVKLTPYLFQFMKCILKDTYRVNFRNIEVRGRRGMVDRLKLSKEY 327 Query 274 PEIRCALKHPPKSPNAEWYLYTKDWLALLR--QFAPDR----VGALEVLGRFESRVRNTA 327 PE+ + + N + + + +L QF D V +L++ VRN Sbjct 328 PELYKSWERSMNQLNYDTKDFELSFFHMLNMIQFHSDTRSDLVNSLKIFTPILKNVRNIV 387 Query 328 AHEIVSISEDRI 339 AHEI +I+++ I Sbjct 388 AHEIATITQEDI 399 >gi|258645681|ref|ZP_05733150.1| CRISPR-associated protein, Csm6 family [Dialister invisus DSM 15470] gi|260403049|gb|EEW96596.1| CRISPR-associated protein, Csm6 family [Dialister invisus DSM 15470] Length=454 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/290 (29%), Positives = 131/290 (46%), Gaps = 22/290 (7%) Query 2 LFLSAEIAAFENADRRYSAAITRLAPETDVRIV--TYTNPSVH-RFDLFVPVFRNHLVEL 58 +FL+ E+ E Y+ I ++AP+ + + T P ++ R + VF E Sbjct 37 VFLTKEMEDKEAESECYTKGIQKVAPQCKIEFIRSGITEPHIYERLTVLQDVFH----EK 92 Query 59 SAEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARAL-SKPGDRESPDAY 117 ++PD LLN SSGTP ++ + I + P T A+QV TP ++ SK E+P Sbjct 93 YEQYPDEEWLLNLSSGTPQIKTVMGLIGL-DYPETKAIQVLTPGKSSNSKNHPEETPGLV 151 Query 118 DLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR--L 175 + M D NDDN P APNRC EA + L + + L+ +Y+Y A+ + +R Sbjct 152 E---MLDCNDDNDPAAPNRCKEAKLSLLKKHSVKWQIISLVENYEYEGALQLLRQNRHLF 208 Query 176 PDQVSNLIRGAMHRSRLEHLVAPKFFKDTAFTYDP----ANKVAEYISALALLAKREQWA 231 D L+R A+ R L A K ++ P A E+ + L +++Q Sbjct 209 SDISEKLLRHAVCRRNLMWKDANKII--PSYNGKPLISKAGDFEEFFRVMELRQRKKQLY 266 Query 232 EFARSATPAITIVLRAAVAKHLPEDRYLDDMGRVDRRKLEREPEIRCALK 281 EF TP I L A L E R L D+ + + + ++R LK Sbjct 267 EFIVKTTP-ICTKLATDYAISL-EQRTLFDLNACSEIRRDEDGDVRYVLK 314 >gi|312899100|ref|ZP_07758478.1| CRISPR-associated protein, Csm6 family [Megasphaera micronuciformis F0359] gi|310619767|gb|EFQ03349.1| CRISPR-associated protein, Csm6 family [Megasphaera micronuciformis F0359] Length=446 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 107/418 (26%), Positives = 172/418 (42%), Gaps = 55/418 (13%) Query 2 LFLSAEIAAFENADRRYSAAITRLAPETDVRIVT--YTNPSVHRFDLFVPVFRNHLVELS 59 +FL+A++ E YS + ++AP+ ++ + T P + L++ + EL Sbjct 36 IFLTADMEEKEEQWHCYSLGVKKVAPQCEIEFIKSGITEPQNYEKLLYL---QEKFDELF 92 Query 60 AEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDL 119 +FPD +LN +SGT MQ + ++V P TAVQVS P K + Y Sbjct 93 EQFPDVKWILNITSGTSQMQTIMSFLSV-DYPSCTAVQVSNPHVDRDKVAVHCEKEEY-- 149 Query 120 ELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR--LPD 177 M + N+D+ P +PNRC E + + R ++ L+ +Y+Y A+ + +R D Sbjct 150 VQMLECNEDDDPSSPNRCTEPPLLMIRRHVLRFQIESLVRNYEYGGALQLVEQNRRLFSD 209 Query 178 QVSNLIRGAMHRSRLEHLVAPKFFKD---TAFTYDPANKVAEYISALALLAKREQWAEFA 234 L+R + R+ L A K D P + +EY + L ++ Q +EF Sbjct 210 TTERLLRHGVCRTMLNWREANKIISDYEGNILMQSPGD-FSEYFQVMELRQRKGQLSEFI 268 Query 235 RSATPAITIVLRAAVAKHLPEDRYLD--DMGRVDRRKLER------------EPEIRCAL 280 +P VL K+L + D GR R ER PE++ L Sbjct 269 VKLSP----VLMGLGFKYLECIKGFDLLQCGRELDRNGERVFIWDCNKARKYNPELQDYL 324 Query 281 KHPPKSPNAEWYLYTKDWLALLRQFAPDRVG----------ALEVLGRFESRVRNTAAHE 330 + LY + +AL + + A L E RN AH Sbjct 325 DKKYSGDMKDGPLYFQTIMALCEYYKATTLKSDALHNEITTAFSKLRTVEETARNPIAHN 384 Query 331 IVSISEDRI---TKDGGLLPEQ---LLKILARETGADLT------LYDRLNDEIIRQI 376 I +++E R+ TK L P +L+IL R+ D+ YD LND I+ + Sbjct 385 ICNMTETRLEEETKKQLLEPLNSAGILRIL-RKVYKDIYKKNMAWTYDGLNDCIVESL 441 >gi|114567261|ref|YP_754415.1| hypothetical protein Swol_1746 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338196|gb|ABI69044.1| hypothetical protein Swol_1746 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length=413 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 95/352 (27%), Positives = 157/352 (45%), Gaps = 38/352 (10%) Query 30 DVRIVTYTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPAMQAALVAINVFG 89 ++R NP +FD+F PVF L+++ P IL+N SSGTP M++A + + Sbjct 34 ELRYEEIDNP--QQFDIFYPVFEKELIDIHNANPGCEILINLSSGTPQMKSACHLLALTT 91 Query 90 IPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDANDDNQP--GAPNRCFEATSAALGA 147 +QV+TP + + YDLE W N DN P G NR S L Sbjct 92 PFPVIPIQVTTPNES-----ENYGSANYDLETSWKNNLDNDPELGTNNRTQLVESDNLRY 146 Query 148 LLERANLKQLIVSYDYSAAVTIAAD--SRLPDQVSNLIRGAMHRSRLEHLVAPKFFKDTA 205 L R I +++YS+A+ I A +P+ V +L+ A HR ++ A K + Sbjct 147 LFLREAAISNINAFNYSSALAILASVAEFVPEDVIHLLMAAQHRKNMDLREAKKRSRLAN 206 Query 206 FTYDP-----ANKVAEYISALALLAKREQWAEFARSATPAIT----IVLRAAVAKHLPED 256 + P A ++ EY+ L L Q +F R +PA++ LR + + D Sbjct 207 YDLFPVKSGDAQELFEYLLLLDLQQNSGQLMDFVRGISPALSRLFECFLREKCQRQVKLD 266 Query 257 -----RYLDDMGRVDRRKL-EREPEIRCA--LKHPPKSPNAEWYLYTKDWLALLR----- 303 R+ D + R KL E++P + C L+ P +++ L L ++ Sbjct 267 YCVNKRHEPDHYWLKRDKLAEKDPSLLCYYDLRFPNGFRDSD--LSCSTLLPMIEFDCRP 324 Query 304 --QFAPDRV-GALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLK 352 +F ++V + + E ++RN AAH IV++ E + + G+ L+K Sbjct 325 GGRFPNEKVLLKAQYMRSVEEKIRNPAAHNIVAVKEKQFMQLVGISSASLVK 376 >gi|229826475|ref|ZP_04452544.1| hypothetical protein GCWU000182_01848 [Abiotrophia defectiva ATCC 49176] gi|229789345|gb|EEP25459.1| hypothetical protein GCWU000182_01848 [Abiotrophia defectiva ATCC 49176] Length=450 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 104/419 (25%), Positives = 189/419 (46%), Gaps = 51/419 (12%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAP--ETDVRIVTYTNPS---VHRFDLFVPVFRNHL 55 +L++S E+ + D RY I +L T I P V+ FD F F+ L Sbjct 37 ILYISNEMLENQEKDDRYRYCIRQLDKFASTSTEIAVIERPDLKDVNDFDYFYKDFKEIL 96 Query 56 VELSAEF-PDRTILLNTSSGTPAMQAALVAIN-VFGIPRTTAVQVSTPARALSKPGDRES 113 + D +L+N SSGTP M++ L + + +QVSTP + + + + Sbjct 97 DKYVKTLNEDDELLINISSGTPQMKSGLAVLQTMLEYSNCKLIQVSTPEK---RSNEHYT 153 Query 114 PDAYDLELMWDA--NDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAA 171 ++E +W+ + NRC E +L + +K+ I++YDY+AA++IA Sbjct 154 SSDENIEELWNIYIEYNGVESFENRCKEVIFPSLSTIKMEEIIKKHILAYDYAAALSIAE 213 Query 172 DSRLPDQVS----NLIRGAMHRSRLEHLVAPKFFK-DTAFTYDPANK-----VAEYISAL 221 + LP + + +L+R A R +L + + + P K + EY AL Sbjct 214 E--LPKESTESYIHLLRYAKARLQLNEIDVNNIKSANNECDFLPVKKSEQRKIVEYTLAL 271 Query 222 ALLAKREQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGRVDRRKLE-REPEIRCAL 280 + KRE++A+F R+ TP + + L A + K+ E L+ +++ + +I + Sbjct 272 DVKRKREEYADFLRAITPLL-VELFANILKNCFEID-LNPYTEIEKGEFRWNGTKISEDI 329 Query 281 KHPPKSPNAEWYL------YTKDWLALLRQFAPDR-------VGALEVLGRFESRVRNTA 327 + K N + Y T L + + P + +++L E +RN A Sbjct 330 EQTLKDGNIDLYKNSFKPSVTSFHLYTIMKNLPKKNDNMRKAFEIIDILRAVEQNIRNKA 389 Query 328 AHEIVSISEDRITKDGGLLPEQLLKILARE--TGADLTL--------YDRLNDEIIRQI 376 AH++VS+++ +I K + E ++K + RE T +D+ + Y+ +ND II +I Sbjct 390 AHQMVSVTDAKIEKITDMNAEGIMKKI-RELFTYSDINIPKQGGWNSYELMNDSIIAKI 447 >gi|333976325|gb|EGL77194.1| CRISPR-associated protein, Csm6 family [Veillonella parvula ACS-068-V-Sch12] Length=439 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 102/425 (24%), Positives = 179/425 (43%), Gaps = 70/425 (16%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 +L LS ++ E +D R+S A+ + + D++++ VHR D P F +H E+ + Sbjct 35 ILVLSKDMEQKEASDSRFSKALKHVKADLDIKLIHTGLEDVHRIDTLQP-FVDHFYEMLS 93 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 ++PD IL+N SSGTP M+ + ++V +QV +P +R P D E Sbjct 94 KYPDAEILINLSSGTPQMKLIMSYLSVEH-DAVRGIQVDSPQGG----SNRSEPAVNDDE 148 Query 121 LMWDAND---DNQPGAPNRCFEATSAALGALLERANLKQ----LIVSYDYSAAVTIA--- 170 + + D+Q G NRC E ++R NLKQ LI SY Y A+++ Sbjct 149 DIEIIIENNLDDQEGTENRCHEPQM----GYIKRNNLKQSLHTLINSYKYKEAISLYHGY 204 Query 171 ----ADSRLPDQVSNLIRGAMHRSRLEHLVAPKFFKDTA-------FTYDPANKVAEYIS 219 D + D V L+ A R L++ A + + FT K+ E++ Sbjct 205 KRTFKDGVVID-VLPLLEHAQLRLGLDYDSALQKSRKVGSINLSSIFTDKVLRKLHEFLM 263 Query 220 ALALLAKREQWAEFARSATPAITIVLRAAVAKHLPEDRYLDDMGRVDRRKLERE------ 273 + + K+ Q +F TP + ++R K V+ R++E++ Sbjct 264 LMEVRLKQGQIEDFILKTTPFMYELMRYYFTKEFS----------VNWRQVEKKTSKGVR 313 Query 274 ----------PEIRCALKHPPKSPN-AEWYLYTKDWLALLRQF-APDR--VGALEVLGRF 319 P++ + + +P E + L +L + DR + L+ + R Sbjct 314 LDMVAFKNQYPKLYESWQENSDTPYLKELQVSFYHMLHMLENYDTVDRSLLKQLKEIRRI 373 Query 320 ESRVRNTAAHEIVSISEDRITKDGGLLPEQ--------LLKILARETGADLTLYDRLNDE 371 E ++RN AHEIV +E I + Q + I+ + + +YD +N Sbjct 374 EQKIRNKMAHEIVVFTERDICSAAEIQSLQSFLHQIKDVFFIITGQEKQNKLIYDTINTY 433 Query 372 IIRQI 376 ++ QI Sbjct 434 VLEQI 438 >gi|322387549|ref|ZP_08061158.1| hypothetical protein HMPREF9423_0556 [Streptococcus infantis ATCC 700779] gi|321141416|gb|EFX36912.1| hypothetical protein HMPREF9423_0556 [Streptococcus infantis ATCC 700779] Length=429 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/268 (25%), Positives = 115/268 (43%), Gaps = 25/268 (9%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VL S E+ ++ + +I P+ + + N V+ FD V + + S Sbjct 35 VLVYSEEMLVKKDLVEKALCSIEGYHPKVVIESIILKNDEVYLFDKMYEVMGQIIEKYSG 94 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSK---PGDRESPDAY 117 D ++LN SSGTP + +AL A+N T A+QV+TP ++ ++ P E Sbjct 95 --TDHQLILNLSSGTPQIISALFALNRINDYNTQAIQVATPNKSANRKYVPLSNE----- 147 Query 118 DLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPD 177 D + ++D N+DNQ +R + + L + +L+ LI SYDY +AA+ + Sbjct 148 DEQKLFDENEDNQKDYEDRTIKDEAEKFNQSLIKRHLRNLISSYDY-----LAAEELVTR 202 Query 178 QVSNLIRGAMHRSRLEHLVAP--KFFKDTAFTYD--------PANKVAEYISALALLAKR 227 + N + +RL L+ K FK A D K Y + +L +R Sbjct 203 KEYNKLLSKKKLARLRDLLNDFVKVFKTQAILKDIQGYSLTEVEKKALNYFLMIEVLKER 262 Query 228 EQWAEFARSATPAITIVLRAAVAKHLPE 255 Q A+ + + ++ + K P+ Sbjct 263 GQVADVLIKSKSYVEFIIEEKIKKDYPD 290 >gi|322375481|ref|ZP_08049994.1| CRISPR-associated protein, Csm6 family [Streptococcus sp. C300] gi|321279744|gb|EFX56784.1| CRISPR-associated protein, Csm6 family [Streptococcus sp. C300] Length=407 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 83/356 (24%), Positives = 145/356 (41%), Gaps = 31/356 (8%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VL S E+ + R + P+ + N V+ +D + + E S Sbjct 13 VLLYSEEMLVKKTLIERALLSFKDYKPDVKIHEQILRNDEVYLYDKMYEIIGKIIKEYSK 72 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 ++LN SSGTP +++AL AIN T A+QV+TP+ + + P S + D Sbjct 73 --LGEELILNLSSGTPQIKSALFAINRIDDYNTQAIQVTTPSNSSNNPQKILSKEEED-- 128 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAA--VTIAADSRLPDQ 178 ++ N+DNQ NRC + L + +L+ LI SYDY A + I DS+ Sbjct 129 NLFKNNEDNQDNYENRCIMDIAEKFNHSLVKRHLRSLIESYDYLAVEKIVIRRDSKGLLS 188 Query 179 VSNLIRGAMHRSRLEHLVAPKFFKDTAFTY---DPANKVAEYISALALLAKREQWAEFAR 235 L R + + L ++ + Y + K Y + +L KR Q A+ Sbjct 189 NKQLARLRIILTDLVNVFKKQEVLSEIQKYPLSEVEKKALNYFLMIEILNKRGQVADVLI 248 Query 236 SATPAITIVLRAAVAKHLPE-----------DRYLDDMGRV------DRRKLEREPEIRC 278 + + +L + ++ P ++ D +V D +K + E E + Sbjct 249 KSKSLVEFILEDRIKRNHPNLIIYKNKLPKLNKEHQDFEKVIGYLDSDYKKSQNENEGKK 308 Query 279 ALKHPPKSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSI 334 P + N +YTK + +++P+ + +L V+ + RN AH + I Sbjct 309 EDFSPTTTLN--LIIYTK--ILEYYKYSPELIKSLRVIISLNNE-RNKVAHGLSEI 359 >gi|270292491|ref|ZP_06198702.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270278470|gb|EFA24316.1| conserved hypothetical protein [Streptococcus sp. M143] Length=349 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 72/290 (25%), Positives = 125/290 (44%), Gaps = 29/290 (10%) Query 67 ILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDAN 126 ++LN SSGTP +++AL AIN T A+QV+TP+ + + P S + D ++ N Sbjct 19 LILNLSSGTPQIKSALFAINRIDDYNTQAIQVTTPSNSSNNPQKILSKEEED--NLFKNN 76 Query 127 DDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAA--VTIAADSRLPDQVSNLIR 184 +DNQ NRC + L + +L+ LI SYDY A + I DS+ L R Sbjct 77 EDNQDNYENRCIMDIAEKFNHSLVKRHLRSLIESYDYLAVEKIVIRRDSKGLLSNKQLAR 136 Query 185 GAMHRSRLEHLVAPKFFKDTAFTY---DPANKVAEYISALALLAKREQWAEFARSATPAI 241 + + L ++ + Y + K Y + +L KR Q A+ + + Sbjct 137 LRIILTDLVNVFKKQEVLSEIQKYPLSEVEKKALNYFLMIEILNKRGQVADVLIKSKSLV 196 Query 242 TIVLRAAVAKHLPE-----------DRYLDDMGRV------DRRKLEREPEIRCALKHPP 284 +L + ++ P ++ D +V D +K + E E + P Sbjct 197 EFILEDRIKRNHPNLIIYKNKLPKLNKEHQDFEKVIGYLDSDYKKSQNENEGKKEDFSPT 256 Query 285 KSPNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSI 334 + N +YTK + +++P+ + +L V+ + RN AH + I Sbjct 257 TTLN--LIIYTK--ILEYYKYSPELIKSLRVIISLNNE-RNKVAHGLSEI 301 >gi|315641548|ref|ZP_07896617.1| csm6 family CRISPR-associated protein [Enterococcus italicus DSM 15952] gi|315482685|gb|EFU73212.1| csm6 family CRISPR-associated protein [Enterococcus italicus DSM 15952] Length=430 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/218 (24%), Positives = 95/218 (44%), Gaps = 15/218 (6%) Query 44 FDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPAR 103 FD + +F +LVE ++P+ I LN +SGTP M+ L V + +QVSTP + Sbjct 83 FDAYKDLFHQYLVEEKRKYPNAEIFLNVTSGTPQMETTLCLEYVTYPDKMRCIQVSTPLK 142 Query 104 ALSKPGDRESPDAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDY 163 + D +++L + ++ + P+RC + + + R +K L+ +YDY Sbjct 143 TSNAKTKYAQADCQEVDL--EIVNEEESQQPSRCHKIAILSFREAIVRNQIKSLLDNYDY 200 Query 164 SAAVTIAADSRLPDQVSNLIRGAMHRSRLEHLV----APKFFKDTAFTYDPANKVAEYIS 219 AA+ + A + + G R +L+ L+ + F Y K+ + + Sbjct 201 EAALQLVASQK------SFRNGKEIRKKLKELIDDIKMHRVFSYLIKQYPRNEKLQKALL 254 Query 220 ALALLAKREQWAEFARSATPAITI---VLRAAVAKHLP 254 LL R Q + A + +I ++ + K+ P Sbjct 255 HTILLEMRHQRGDIAETLIRVKSIAEYIVEQYIQKNYP 292 >gi|322387548|ref|ZP_08061157.1| hypothetical protein HMPREF9423_0555 [Streptococcus infantis ATCC 700779] gi|321141415|gb|EFX36911.1| hypothetical protein HMPREF9423_0555 [Streptococcus infantis ATCC 700779] Length=386 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 89/391 (23%), Positives = 155/391 (40%), Gaps = 62/391 (15%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 ++F I+ ++ ++ + T PE N V FD F + + Sbjct 36 IVFSERTISKKDDIEKVIHSIDTEYLPEIVCHEPIILNEDVFVFDTMYEQFDAIIQKYYT 95 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 + D +LN SS TP +++AL IN AVQVS+P S G D+ D++ Sbjct 96 K--DDGFILNLSSATPQVKSALFVINRLSEINVKAVQVSSPEND-SNAG-VGHDDSEDID 151 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 + D N DN+ +R E TS L + L+ I YDY A++ +A +Q+S Sbjct 152 ALIDTNLDNKQDYIDRTIEDTSEKFKQGLMKKTLRDFITKYDYKASLEVA------NQLS 205 Query 181 NLIRGAMHRSRLEHLV-------APKFFKDTAFTYDPANKVAEYISALALLAKREQWAEF 233 + R +L+ +V P+ + ++ + + Y++ + L +R ++E Sbjct 206 DFPGLKECRKKLQDIVDSLDRQAVPQVLQKKKWSEEQKKVLNSYLT-IDLQKERGNFSEG 264 Query 234 ARSATPAITIVLRAAVAKHLPE--DRYLDD-----MGRVDRRKLEREPEIRCALKHPPKS 286 +L + P D Y +D +G D K+ +E Sbjct 265 LIRIKNLTEFILDDYIENRYPGFLDNYANDSEKYYIGIWDYGKILQEKR----------- 313 Query 287 PNAEWYLYTKDWLALLRQFAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLL 346 EW L+ K +LR ++ RNT AH++ S+ + + + G +L Sbjct 314 ---EWTLHNK-IKPILRM----------------NKTRNTIAHKLDSLDSEELKQLGPVL 353 Query 347 PEQLLKILARE----TGADLTLYDRLNDEII 373 + LK L +E T D Y N E++ Sbjct 354 --KALKGLIKEQYQLTEKDFNFYKDFNKELL 382 >gi|57865879|ref|YP_189999.1| hypothetical protein SERP2456 [Staphylococcus epidermidis RP62A] gi|57636537|gb|AAW53325.1| hypothetical protein SERP2456 [Staphylococcus epidermidis RP62A] Length=422 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/163 (24%), Positives = 74/163 (46%), Gaps = 14/163 (8%) Query 18 YSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPA 77 + I ++P T+V I+ + +D+F F +L + + D I+LN +SGTP Sbjct 57 WEKIIQTVSPNTEVEIIIENVDNAQDYDVFKEKFHKYLKIIEDSYEDCEIILNVTSGTPQ 116 Query 78 MQAALVAINVFGIPRTTAVQVSTPAR------ALSKPGDRESPDAYDLELMWDANDDNQP 131 M++ L + VQVSTP + S P D+ + E++ ++ + Sbjct 117 MESTLCLEYIVYPENKKCVQVSTPTKDSNAGIEYSNPKDK----VEEFEIV----NEVEK 168 Query 132 GAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR 174 + RC E + + R+ + LI +YDY A+ + ++ + Sbjct 169 KSEKRCKEINILSFREAMIRSQILGLIDNYDYEGALNLVSNQK 211 >gi|329736405|gb|EGG72674.1| CRISPR-associated protein, Csm6 family [Staphylococcus epidermidis VCU045] gi|341656707|gb|EGS80416.1| CRISPR-associated protein, Csm6 family [Staphylococcus epidermidis VCU037] Length=422 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/163 (24%), Positives = 74/163 (46%), Gaps = 14/163 (8%) Query 18 YSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPA 77 + I ++P T+V I+ + +D+F F +L + + D I+LN +SGTP Sbjct 57 WEKIIQTVSPNTEVEIIIENVDNAQDYDVFKEKFHKYLKIIEDSYEDCEIILNVTSGTPQ 116 Query 78 MQAALVAINVFGIPRTTAVQVSTPAR------ALSKPGDRESPDAYDLELMWDANDDNQP 131 M++ L + +QVSTP + S P D+ + E++ ++ + Sbjct 117 MESTLCLEYIVYPENKKCIQVSTPTKDSNAGIEYSNPKDK----VEEFEIV----NEVEK 168 Query 132 GAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSR 174 + RC E + + R+ + LI +YDY A+ + ++ + Sbjct 169 KSEKRCKEINILSFREAMIRSQILGLIDNYDYEGALNLVSNQK 211 >gi|289549404|ref|YP_003470308.1| CRISPR-associated protein Csm6 [Staphylococcus lugdunensis HKU09-01] gi|289178936|gb|ADC86181.1| CRISPR-associated protein Csm6 [Staphylococcus lugdunensis HKU09-01] Length=225 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 73/156 (47%), Gaps = 6/156 (3%) Query 18 YSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPA 77 + +++++P+T V I H FD + +F + + P+ ILLN +SGTP Sbjct 57 WEKIVSKVSPQTSVEIKVENIEHEHDFDSYKDLFSYFIKGIRMSNPESEILLNVTSGTPQ 116 Query 78 MQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDA--YDLELMWDANDDNQPGAPN 135 M++ L + +QVS P + + +P+ DLE + + N+ A N Sbjct 117 MESTLCLEYISNPNNAQCIQVSAPQPSNNTKRLYANPNNAFKDLEKV----NQNEHLADN 172 Query 136 RCFEATSAALGALLERANLKQLIVSYDYSAAVTIAA 171 RC + ++ R+ ++ LI +YDY A+ + + Sbjct 173 RCKSINILSFREVMVRSQVRGLIDNYDYEGALNLIS 208 >gi|312278327|gb|ADQ62984.1| Putative uncharacterized protein [Streptococcus thermophilus ND03] Length=391 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/143 (29%), Positives = 68/143 (48%), Gaps = 4/143 (2%) Query 27 PETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPAMQAALVAIN 86 PE + + ++ VH FD+ F + L E + + +LN SS TP +++AL IN Sbjct 10 PELIIHDLIISDNEVHIFDVMFQRFSDILQEYYTK--EDEFILNLSSATPQIKSALFVIN 67 Query 87 VFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDANDDNQPGAPNRCFEATSAALG 146 AV+VS+P A +K ++ + D EL+ N+DN+ +R E + Sbjct 68 RLNGINVKAVKVSSPEHASNKNIGHDNDENID-ELIK-VNEDNKVNFIDRTIEDNAEKFS 125 Query 147 ALLERANLKQLIVSYDYSAAVTI 169 L + + I +DY AA+ I Sbjct 126 QALLKKTARDFIEKFDYKAALDI 148 >gi|339278119|emb|CCC19867.1| hypothetical protein STH8232_1168 [Streptococcus thermophilus JIM 8232] Length=428 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/259 (26%), Positives = 106/259 (41%), Gaps = 15/259 (5%) Query 1 VLFLSAEIAAFENADRRYSAAITRLAPETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSA 60 VL S E+ ++ + +I P ++ N V FD V + + + Sbjct 35 VLVYSQEMMVKQDLINKVLLSIEGYNPIIEIDSTILNNDEVFLFDKMYEVMGQIVQKYTN 94 Query 61 EFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLE 120 + D I+LN SSGTP + +AL A+N T A+QV+TP ++ + D Sbjct 95 D--DNEIILNLSSGTPQIISALFALNRINDYNTQAIQVATPKNRANREYTALTESEIDAL 152 Query 121 LMWDANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVS 180 +M N DN+ +R + S L + +L+ LI S+DY AA I +S Sbjct 153 IM--ENQDNRLDFVDRSIKDKSEKFTQALVKRHLRSLIASFDYQAAEAIINRKEYNKLLS 210 Query 181 NLIRGAMHRSRLEHLVAPKFFKDT-------AFTYDPANKVA-EYISALALLAKREQWAE 232 + A R +L + FK+ +F D + K A Y + +L +RE A+ Sbjct 211 KK-KIAYIREKLYDF--SRVFKNQSILSDILSFPLDDSQKKALNYYLMIDVLKEREHIAD 267 Query 233 FARSATPAITIVLRAAVAK 251 A V+ + K Sbjct 268 VLIKAKSLAEFVIEETIKK 286 >gi|334308476|gb|EGL99462.1| CRISPR-associated protein Csm6 [Lactobacillus salivarius NIAS840] Length=350 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/139 (29%), Positives = 64/139 (47%), Gaps = 4/139 (2%) Query 37 TNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAV 96 ++ V FD V + + S E D ++LN SSGTP M++AL IN A Sbjct 10 SDSEVFIFDKMYEVLNGIISKYSKE--DEDLILNLSSGTPQMKSALFTINRLKDINVKAY 67 Query 97 QVSTPARALSKPGDRESPDAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQ 156 QV TP+ + S G + + D++ + N DN+ R E + L + +K Sbjct 68 QVVTPSHS-SNEGIKHDNNL-DIDYLISTNLDNRDDFEKRILEDKAEKFQQTLIKRTMKD 125 Query 157 LIVSYDYSAAVTIAADSRL 175 L+ S+DY + ++ R+ Sbjct 126 LLNSFDYESLYNLSKRYRV 144 >gi|339278118|emb|CCC19866.1| hypothetical protein STH8232_1167 [Streptococcus thermophilus JIM 8232] Length=386 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 83/369 (23%), Positives = 146/369 (40%), Gaps = 62/369 (16%) Query 21 AITRLAPETDVRIVTY----TNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTP 76 A+ +AP + ++ + ++ VH FD+ F + L E + + +LN SS TP Sbjct 52 ALFSIAPNYEPELIIHDPIISDNEVHIFDVMFQRFSDILQEYYTK--EDEFILNLSSATP 109 Query 77 AMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDANDDNQPGAPNR 136 +++AL IN AVQVS+P A ++ ++ + D EL+ + N DN+ +R Sbjct 110 QIKSALFVINRLNGINVKAVQVSSPEHASNENIGHDNDENID-ELI-EVNKDNKVNFIDR 167 Query 137 CFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVSNLIRGAMHRSRLEHLV 196 E + L + + I +DY AA+ I DQ+S+ R + +V Sbjct 168 TIEDNAEKFSQALLKKTARDFIEKFDYKAALDIL------DQLSDFPNLKSVREEIRDVV 221 Query 197 -------APKFFKDTAFTYDPANKVAEYISALALLAKREQWAEFARSATPAITIVLRAAV 249 PK + + ++ Y++ + L +R +E +L + Sbjct 222 NCLSKQDVPKGLRHKKLKEEEQKILSAYLT-IELQRERGNVSESFIRIKNLTEFILEDYI 280 Query 250 AKHLPE--DRYLDDMGRVDRRKLEREPEIRCALKHPPKSPNAEWYLYTKDWLALL---RQ 304 K P D Y +D+ + +YL D+ LL ++ Sbjct 281 EKRYPGLIDEYCEDIQK--------------------------YYLSLFDYSKLLKATKE 314 Query 305 FAPDRVGALEVLGRFESRVRNTAAHEIVSISEDRITKDGGLLPEQLLKILARE----TGA 360 F R A ++ S RN AH + + D + + G + + LK L RE + + Sbjct 315 FKLKRTIA-PIIDMNSS--RNKVAHSLSPLDSDAVKQLG--IAMKTLKTLVREQYHFSQS 369 Query 361 DLTLYDRLN 369 D Y LN Sbjct 370 DFNFYHDLN 378 >gi|227890800|ref|ZP_04008605.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227867209|gb|EEJ74630.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length=412 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/135 (29%), Positives = 62/135 (46%), Gaps = 4/135 (2%) Query 37 TNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPAMQAALVAINVFGIPRTTAV 96 ++ V FD V + + S E D ++LN SSGTP M++AL IN A Sbjct 71 SDSEVFIFDKMYEVLNGIISKYSKE--DEDLILNLSSGTPQMKSALFTINRLKDINVKAY 128 Query 97 QVSTPARALSKPGDRESPDAYDLELMWDANDDNQPGAPNRCFEATSAALGALLERANLKQ 156 QV TP+ + S G + + D++ + N DN+ R E + L + +K Sbjct 129 QVVTPSHS-SNEGIKHDNNL-DIDYLISTNLDNRDDFKKRILEDKAEKFQQTLIKRTMKD 186 Query 157 LIVSYDYSAAVTIAA 171 L+ S+DY + ++ Sbjct 187 LLNSFDYESLYNLST 201 >gi|325687525|gb|EGD29546.1| hypothetical protein HMPREF9381_1059 [Streptococcus sanguinis SK72] Length=438 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/258 (25%), Positives = 104/258 (41%), Gaps = 30/258 (11%) Query 18 YSAAITRLAPETDVRIVT--YTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGT 75 + AA+ + V ++ Y VH FD L E D +LN +SGT Sbjct 90 FEAAVQAVYDGKKVYVIQNKYVKEGVHEFDTMYKFVEEILDEEDMSHGD--YILNVTSGT 147 Query 76 PAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESP------DAYDLELM-WDANDD 128 P QAA+ AIN T +V++P + ++ +P Y LE D D+ Sbjct 148 PQCQAAMYAINFVKDYHTRLARVNSPRSEKTNQSNQGAPWFETATFKYFLEKQASDYEDN 207 Query 129 NQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQVSNLIRGAMH 188 Q G E LL+R K I+ Y+Y AA+ I ++ PD +S+ Sbjct 208 RQLG-----IEKGEKFKNNLLQRT-YKNFILKYEYKAALDILKEN--PDIISDKQDQENS 259 Query 189 RSRLEHLVA--------PKFFKDTAFTY---DPANKVAEYISALALLAKREQWAEFARSA 237 ++ LE++++ + D+ Y D KV Y + +L +R Q + A Sbjct 260 KNILENMISVFQKQRVLEELAADSNLKYNNTDEFQKVLNYYLMIDILNRRGQVTDVLVKA 319 Query 238 TPAITIVLRAAVAKHLPE 255 +L++ + + P+ Sbjct 320 KSFAEFILKSVIERRHPD 337 >gi|55822919|ref|YP_141360.1| hypothetical protein str0965 [Streptococcus thermophilus CNRZ1066] gi|55738904|gb|AAV62545.1| unknown protein [Streptococcus thermophilus CNRZ1066] Length=399 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/143 (28%), Positives = 66/143 (47%), Gaps = 4/143 (2%) Query 27 PETDVRIVTYTNPSVHRFDLFVPVFRNHLVELSAEFPDRTILLNTSSGTPAMQAALVAIN 86 PE + ++ VH FD+ F + L E + + +LN SS TP +++AL IN Sbjct 10 PELIIHDPIISDNEVHIFDVMFQRFSDILQEYYTK--EDEFILNLSSATPQIKSALFVIN 67 Query 87 VFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDANDDNQPGAPNRCFEATSAALG 146 AV+V +P A ++ ++ + D EL+ N+DN+ +R E + Sbjct 68 RLNGINIKAVKVWSPEHASNENIGHDNDENID-ELI-KVNEDNKVNFIDRTIEDNAEKFS 125 Query 147 ALLERANLKQLIVSYDYSAAVTI 169 L + + I +DY AA+ I Sbjct 126 QALLKKTARDFIEKFDYKAALDI 148 >gi|55821001|ref|YP_139443.1| hypothetical protein stu0966 [Streptococcus thermophilus LMG 18311] gi|55736986|gb|AAV60628.1| unknown protein, truncated [Streptococcus thermophilus LMG 18311] Length=342 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/101 (30%), Positives = 50/101 (50%), Gaps = 2/101 (1%) Query 69 LNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDANDD 128 +N SS TP +++AL IN AV+VS+P A ++ ++ + D EL+ N+D Sbjct 1 MNLSSATPQIKSALFVINRLNGINVKAVKVSSPEHASNENIGHDNDENID-ELIK-VNED 58 Query 129 NQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTI 169 N+ +R E + L + + I +DY AA+ I Sbjct 59 NKVNFIDRTIEDNAEKFSQALLKKTARDFIEKFDYKAALDI 99 >gi|301299687|ref|ZP_07205941.1| putative CRISPR-associated protein, Csm6 family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852710|gb|EFK80340.1| putative CRISPR-associated protein, Csm6 family [Lactobacillus salivarius ACS-116-V-Col5a] Length=311 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 29/107 (28%), Positives = 48/107 (45%), Gaps = 2/107 (1%) Query 69 LNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWDANDD 128 +N SSGTP M++AL IN A QV TP+ + S G + + + N D Sbjct 1 MNLSSGTPQMKSALFTINRLNDINVRAYQVITPSHS-SNEGIGHDNNL-GINYLISTNLD 58 Query 129 NQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRL 175 N+ R E + L + +K L+ ++DY + ++ R+ Sbjct 59 NRKDFKKRILEDKAEKFQKTLIKRTMKDLLNNFDYESLYNLSIRHRV 105 >gi|325696574|gb|EGD38464.1| hypothetical protein HMPREF9384_1721 [Streptococcus sanguinis SK160] Length=438 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 48/204 (24%), Positives = 84/204 (42%), Gaps = 30/204 (14%) Query 68 LLNTSSGTPAMQAALVAINVFGIPRTTAVQVSTPARALSKPGDRESPDAYDLELMWD--- 124 +LN +SGT QAA+ IN T +V +P + ++ +P Y E++ D Sbjct 140 ILNITSGTAQCQAAMYFINFIKDYHTRLARVDSPNGKKTNRSNQGAP--YFEEVVLDDLL 197 Query 125 ------ANDDNQPGAPNRCFEATSAALGALLERANLKQLIVSYDYSAAVTIAADSRLPDQ 178 D+ +P E LL+R K I++Y+Y AA+ I + PD Sbjct 198 KKQTAECRDERKPE-----IETGEKLKNNLLQRT-YKDFILNYEYKAALDILKAN--PDI 249 Query 179 VSNLIRGAMHRSRLEHLVA----PKFFK----DTAFTYDPA---NKVAEYISALALLAKR 227 +SN + LE++++ K K D+ Y+ KV Y + +L +R Sbjct 250 ISNKDDQEKSKKALENMISVFQKQKVLKELAADSKLKYNDTGEFQKVLNYYLMIDILNRR 309 Query 228 EQWAEFARSATPAITIVLRAAVAK 251 Q + A +L++ + + Sbjct 310 GQVTDVLVKAKSFAEFILKSVIER 333 Lambda K H 0.320 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 740471427550 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40