BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2819c Length=375 Score E Sequences producing significant alignments: (Bits) Value gi|15609956|ref|NP_217335.1| hypothetical protein Rv2819c [Mycob... 778 0.0 gi|298526288|ref|ZP_07013697.1| conserved hypothetical protein [... 776 0.0 gi|254232914|ref|ZP_04926241.1| hypothetical protein TBCG_02755 ... 775 0.0 gi|289762994|ref|ZP_06522372.1| hypothetical protein TBIG_02177 ... 775 0.0 gi|340627815|ref|YP_004746267.1| hypothetical protein MCAN_28431... 582 2e-164 gi|224543482|ref|ZP_03684021.1| hypothetical protein CATMIT_0269... 154 2e-35 gi|315925057|ref|ZP_07921274.1| conserved hypothetical protein [... 153 4e-35 gi|114567267|ref|YP_754421.1| hypothetical protein Swol_1752 [Sy... 142 6e-32 gi|345284418|gb|AEN78271.1| CRISPR-associated Csm5 family protei... 139 7e-31 gi|116627770|ref|YP_820389.1| hypothetical protein STER_0977 [St... 137 3e-30 gi|327469968|gb|EGF15432.1| hypothetical protein HMPREF9386_0579... 136 4e-30 gi|312278325|gb|ADQ62982.1| CRISPR-associated protein, Csm5 fami... 136 7e-30 gi|339278117|emb|CCC19865.1| hypothetical protein STH8232_1166 [... 135 8e-30 gi|325687526|gb|EGD29547.1| hypothetical protein HMPREF9381_1060... 135 1e-29 gi|55822918|ref|YP_141359.1| hypothetical protein str0964 [Strep... 135 1e-29 gi|55820999|ref|YP_139441.1| hypothetical protein stu0964 [Strep... 135 1e-29 gi|240143670|ref|ZP_04742271.1| CRISPR-associated RAMP protein, ... 134 3e-29 gi|125718067|ref|YP_001035200.1| hypothetical protein SSA_1247 [... 132 8e-29 gi|331004039|ref|ZP_08327521.1| csm5 family CRISPR-associated ra... 127 4e-27 gi|322387547|ref|ZP_08061156.1| hypothetical protein HMPREF9423_... 126 6e-27 gi|229826462|ref|ZP_04452531.1| hypothetical protein GCWU000182_... 124 2e-26 gi|270292490|ref|ZP_06198701.1| conserved hypothetical protein [... 122 1e-25 gi|322375482|ref|ZP_08049995.1| CRISPR-associated RAMP protein [... 119 7e-25 gi|225018979|ref|ZP_03708171.1| hypothetical protein CLOSTMETH_0... 117 3e-24 gi|253578036|ref|ZP_04855308.1| CRISPR-associated protein [Rumin... 115 1e-23 gi|334126727|ref|ZP_08500675.1| csm5 family CRISPR-associated ra... 111 2e-22 gi|295105101|emb|CBL02645.1| CRISPR-associated RAMP protein, Csm... 103 7e-20 gi|323141259|ref|ZP_08076155.1| CRISPR-associated RAMP protein, ... 102 7e-20 gi|121533436|ref|ZP_01665264.1| CRISPR-associated RAMP protein, ... 97.4 4e-18 gi|227890795|ref|ZP_04008600.1| conserved hypothetical protein [... 92.8 8e-17 gi|334308473|gb|EGL99459.1| CRISPR-associated protein, Csm5 fami... 89.4 8e-16 gi|291460037|ref|ZP_06599427.1| CRISPR-associated RAMP protein, ... 87.0 5e-15 gi|313894850|ref|ZP_07828410.1| CRISPR-associated RAMP protein, ... 82.4 1e-13 gi|312899098|ref|ZP_07758476.1| CRISPR-associated RAMP protein, ... 79.3 9e-13 gi|341822665|emb|CCC73589.1| CRISPR-associated RAMP protein [Meg... 79.0 1e-12 gi|296133517|ref|YP_003640764.1| CRISPR-associated RAMP protein,... 78.6 2e-12 gi|303231949|ref|ZP_07318657.1| CRISPR-associated RAMP protein, ... 74.3 3e-11 gi|339893267|emb|CCB52454.1| CRISPR associated RAMP family prote... 74.3 3e-11 gi|333976281|gb|EGL77150.1| CRISPR-associated RAMP protein, Csm5... 74.3 3e-11 gi|341656686|gb|EGS80395.1| CRISPR-associated RAMP protein, Csm5... 74.3 3e-11 gi|269798857|ref|YP_003312757.1| CRISPR-associated RAMP protein,... 73.6 5e-11 gi|342213932|ref|ZP_08706645.1| CRISPR type III-A/MTUBE-associat... 73.2 7e-11 gi|57865880|ref|YP_190000.1| CRISPR-associated Csm5 family prote... 73.2 7e-11 gi|289549403|ref|YP_003470307.1| CRISPR-associated protein, Csm5... 72.4 1e-10 gi|301299525|ref|ZP_07205794.1| conserved domain protein [Lactob... 72.4 1e-10 gi|292669138|ref|ZP_06602564.1| Csm5 family CRISPR-associated RA... 72.0 2e-10 gi|258645683|ref|ZP_05733152.1| CRISPR-associated RAMP protein, ... 70.1 6e-10 gi|238018270|ref|ZP_04598696.1| hypothetical protein VEIDISOL_00... 69.7 8e-10 gi|315641549|ref|ZP_07896618.1| csm5 family CRISPR-associated ra... 68.9 1e-09 gi|15669863|ref|NP_248677.1| hypothetical protein MJ_1667 [Metha... 65.5 2e-08 >gi|15609956|ref|NP_217335.1| hypothetical protein Rv2819c [Mycobacterium tuberculosis H37Rv] gi|15842360|ref|NP_337397.1| hypothetical protein MT2886 [Mycobacterium tuberculosis CDC1551] gi|31793995|ref|NP_856488.1| hypothetical protein Mb2843c [Mycobacterium bovis AF2122/97] 64 more sequence titles Length=375 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/375 (100%), Positives = 375/375 (100%), Gaps = 0/375 (0%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA Sbjct 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL Sbjct 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE Sbjct 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 Query 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE Sbjct 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 Query 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV Sbjct 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 Query 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI Sbjct 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 Query 361 CYEMGQCELSIRRAE 375 CYEMGQCELSIRRAE Sbjct 361 CYEMGQCELSIRRAE 375 >gi|298526288|ref|ZP_07013697.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|298496082|gb|EFI31376.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length=375 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/375 (99%), Positives = 375/375 (100%), Gaps = 0/375 (0%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEY+VEGDRVYFPDMELLYADIPAHKRKSFEA Sbjct 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYNVEGDRVYFPDMELLYADIPAHKRKSFEA 60 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL Sbjct 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE Sbjct 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 Query 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE Sbjct 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 Query 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV Sbjct 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 Query 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI Sbjct 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 Query 361 CYEMGQCELSIRRAE 375 CYEMGQCELSIRRAE Sbjct 361 CYEMGQCELSIRRAE 375 >gi|254232914|ref|ZP_04926241.1| hypothetical protein TBCG_02755 [Mycobacterium tuberculosis C] gi|124601973|gb|EAY60983.1| hypothetical protein TBCG_02755 [Mycobacterium tuberculosis C] Length=375 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/375 (99%), Positives = 374/375 (99%), Gaps = 0/375 (0%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA Sbjct 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL Sbjct 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE Sbjct 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 Query 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGK DGLPLFRE Sbjct 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKHDGLPLFRE 240 Query 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV Sbjct 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 Query 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI Sbjct 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 Query 361 CYEMGQCELSIRRAE 375 CYEMGQCELSIRRAE Sbjct 361 CYEMGQCELSIRRAE 375 >gi|289762994|ref|ZP_06522372.1| hypothetical protein TBIG_02177 [Mycobacterium tuberculosis GM 1503] gi|289710500|gb|EFD74516.1| hypothetical protein TBIG_02177 [Mycobacterium tuberculosis GM 1503] Length=375 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/375 (99%), Positives = 374/375 (99%), Gaps = 0/375 (0%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 MNTYLKPFE TLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA Sbjct 1 MNTYLKPFERTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA 60 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL Sbjct 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE Sbjct 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 Query 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 RK+LRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE Sbjct 181 RKQLRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 Query 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV Sbjct 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIV 300 Query 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI Sbjct 301 GPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNI 360 Query 361 CYEMGQCELSIRRAE 375 CYEMGQCELSIRRAE Sbjct 361 CYEMGQCELSIRRAE 375 >gi|340627815|ref|YP_004746267.1| hypothetical protein MCAN_28431 [Mycobacterium canettii CIPT 140010059] gi|340006005|emb|CCC45174.1| hypothetical protein MCAN_28431 [Mycobacterium canettii CIPT 140010059] Length=375 Score = 582 bits (1501), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 292/376 (78%), Positives = 314/376 (84%), Gaps = 2/376 (0%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAH-KRKSFE 59 M+ YLKPFELTLRCLGPVFIGSGEKRT KEY VYFPDME LYAD+ A K +SFE Sbjct 1 MSQYLKPFELTLRCLGPVFIGSGEKRTPKEYVASTSMVYFPDMERLYADVAAQGKSESFE 60 Query 60 AFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLT 119 F+MNT AQ EW+ N VK+ P H GY VKIGSI P RA RGR G+M +++ Sbjct 61 EFMMNTGKAQPDERFNEWIAENGVKVSPKNHGGYGVKIGSIVPGRAHRGRDGQMIQEQRQ 120 Query 120 LNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERF 179 LN+IH+FIKD LG PYVPGS+VKGMLRSIYLQSLVH+RTAQPVRVPGHQTREHRQYGERF Sbjct 121 LNDIHSFIKDVLGNPYVPGSSVKGMLRSIYLQSLVHQRTAQPVRVPGHQTREHRQYGERF 180 Query 180 ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFR 239 ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSP LRTSDLLICQKMD+NVHGKPDGLPLFR Sbjct 181 ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPGLRTSDLLICQKMDVNVHGKPDGLPLFR 240 Query 240 ECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPGVNAI 299 ECLAPGTSIS RVVVDTSPTARGGW GERFLETL++T A VN+ARYAEY A Y + Sbjct 241 ECLAPGTSISLRVVVDTSPTARGGWPAGERFLETLSDTVAFVNKARYAEYAAKYWDDDPQ 300 Query 300 VGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDN 359 GPIVYLGGGAGYRSKTFVT QDDMAKVLDAQF K +KHV KTR+L VSPLVLK TKI + Sbjct 301 FGPIVYLGGGAGYRSKTFVTQQDDMAKVLDAQFPK-IKHVAKTRDLGVSPLVLKLTKIGD 359 Query 360 ICYEMGQCELSIRRAE 375 YEMGQCELSIRRAE Sbjct 360 KYYEMGQCELSIRRAE 375 >gi|224543482|ref|ZP_03684021.1| hypothetical protein CATMIT_02691 [Catenibacterium mitsuokai DSM 15897] gi|224523609|gb|EEF92714.1| hypothetical protein CATMIT_02691 [Catenibacterium mitsuokai DSM 15897] Length=380 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/403 (31%), Positives = 184/403 (46%), Gaps = 62/403 (15%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEY-HVEGDRVYFPDMELLYADIPAHKR-KSF 58 M YLK + + L+ LGPVFIGSG++ + KEY + +++ D+ Y ++ K+ SF Sbjct 1 MKNYLKSYRIHLKVLGPVFIGSGKELSKKEYLFYKNNQIAIIDIAKFYLELKKIKKLDSF 60 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPA-KHRGYEVKIGSIEPRRASRGRGGRMTRKK 117 EAF+++ T W+ N V + Y + G IE + R+ Sbjct 61 EAFMLDEHEHLGT-----WIRKNNVNNSIVDRCIKYTLDKGDIEETK----------RRN 105 Query 118 LTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYL--------QSLVHKRTAQPVRVPGHQT 169 + L F+KDP G PYVPGS++KGM R+I+ + +R +V +T Sbjct 106 VML----EFVKDPYGNPYVPGSSLKGMFRTIFFADRLINHSKDYTIQRKQFKEKVFEKET 161 Query 170 REHRQYG---ERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDM 226 + R + E K R RP+T+ DAVND+ V+DS L DL + QK+D+ Sbjct 162 NKKRYLSRNIQDIEAKTFRTLHRPDTKVDDAVNDIMAGFIVSDSEPLSVEDLTLAQKVDV 221 Query 227 NVHGKPDGLPLFRECLAPGTSISHRVVVDTS--PTARGGWREGERFLETLAETAASVNQA 284 +V LP RECL PGT I V +DTS P A+ E + + N Sbjct 222 HVKKGAKNLPSVRECLKPGTDIVFTVTIDTSICPYAKQDIIESINYFDD--------NYN 273 Query 285 RYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFV------TDQDDMAKVLD------AQF 332 +Y + + V I V+LGGG+GY SKT V D + +++ F Sbjct 274 KY--FVEPFTAVEYIDDGSVFLGGGSGYASKTAVYPLFDGEDSEQTVRIVQQIMVNTTTF 331 Query 333 GK-----VVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELS 370 K + KH D R +SP +K T + +MG C+L Sbjct 332 DKKTRRNLHKHEDDLRLYGISPHTIKCTYYHDQLLQMGLCQLD 374 >gi|315925057|ref|ZP_07921274.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621956|gb|EFV01920.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length=363 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 120/388 (31%), Positives = 179/388 (47%), Gaps = 55/388 (14%) Query 8 FELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPD--------MELLYADIPAHKRKSF- 58 F +TL GPV IGSGE+ + KEY V+FP+ M LYA SF Sbjct 6 FRMTLTAQGPVSIGSGEEISKKEY------VFFPEKRRIVVMAMPKLYALAQKKNLGSFF 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAV---KLDPAKHRGYEVKIGSIEPRRASRGRGGRMTR 115 E F+ G + L W+ N + +LD Y + G+IE R Sbjct 60 EDFLCPPPGRRRNQDLGSWICKNRISGKELDTCVR--YILPTGAIETSRNY--------- 108 Query 116 KKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQS-LVHKRTAQPVRVP------GHQ 168 + AF+KDP G+PYVPGS+VKGMLR++ L + L A + G++ Sbjct 109 ------NVWAFVKDPYGKPYVPGSSVKGMLRTVLLTARLWQNHRAWQAEIDALKSGRGNR 162 Query 169 TREHRQYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNV 228 ++ + E + GRP TR +DAVND + V+DS L DL++CQ+++ Sbjct 163 NNYLKREIDTLEARAFHTLGRPGTRREDAVNDELSGLIVSDSEPLTLKDLILCQRLEHKP 222 Query 229 HGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAE 288 GK LP+ +E L PGT I + +D S A E L E A ++ Sbjct 223 DGKEKTLPILKESLRPGTRIRFSLTIDPSRCALTK--------EALLEAVARFDEVYQKC 274 Query 289 YRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTD----QDDMAKVLDA-QFGKVVKHVDKTR 343 + + + G++ + G VYLGG AG+ +KT + Q + + Q KV ++ R Sbjct 275 FLSAFLGMDRLTGSEVYLGGNAGFATKTVIYAALGRQAGIQTIRQIFQQTKVPRNHHHER 334 Query 344 ELRVSPLVLKRTKIDNICYEMGQCELSI 371 +VSP ++K + YE G+C L+I Sbjct 335 NQKVSPHIVKCARYGGKLYEFGKCRLAI 362 >gi|114567267|ref|YP_754421.1| hypothetical protein Swol_1752 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338202|gb|ABI69050.1| CRISPR-associated protein, Csm5 family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length=380 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 123/399 (31%), Positives = 176/399 (45%), Gaps = 50/399 (12%) Query 3 TYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDR--VYFPDMELLYADIPAHKRKSFEA 60 +L+ LTLR L PVFIGSGE+ KEY + +YFPD L A + K +S A Sbjct 4 AHLERLNLTLRALAPVFIGSGEQLGKKEYIFDSPNALIYFPDFPRLVAFL---KERSLLA 60 Query 61 FVMNTDGAQATAPLKEWVEPNAVKL-DPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLT 119 ++ ++E N + D Y + G R Sbjct 61 EYEKFLSTPRLKDIRVFLEENGISAADYPSFVRYSIAAGEAAHIENFR------------ 108 Query 120 LNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVR---------VPG--HQ 168 E+ FIKD G PY+PGS++KG +R+ L+ + + R VP + Sbjct 109 --EVLTFIKDSKGYPYIPGSSLKGAIRTALATYLLKRGDWERDRRNIEGSDSSVPARKYL 166 Query 169 TREHRQYGER-FERKELR--KSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMD 225 RE ++ F + ++R K G+ + P +NDL Q IR++DS AL +L + K D Sbjct 167 ARESSTVEKKVFYQLDIRNPKDGKEISSP---INDLMQGIRISDSAALSFENLTLTGKYD 223 Query 226 MNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQAR 285 G + LP+FRECL PG+ ++ +D AR G G +E A + A Sbjct 224 RKPDGTVNLLPIFRECLTPGSEAHLQLTLDLPMLARVGLNAG--IIEEALHDFADEHYAH 281 Query 286 YAEYRAMYP---GVNAIVGPIVYLGGGAGYRSKTFVTDQ--------DDMAKVLDAQFGK 334 + +Y A P V A G ++LGGG GY SKT + AK+L QF Sbjct 282 FEQYFAELPEDASVAAKEGVDIFLGGGVGYVSKTLTYNLFPQRENAVSLAAKILTKQFSP 341 Query 335 VVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSIRR 373 H + +VSP +LK T Y MG+CEL I R Sbjct 342 KHGHSKDASQYKVSPHILKTTMYAGEYYHMGKCELIITR 380 >gi|345284418|gb|AEN78271.1| CRISPR-associated Csm5 family protein [Lactobacillus ruminis ATCC 27782] Length=347 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 112/391 (29%), Positives = 178/391 (46%), Gaps = 62/391 (15%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHK--RKSF 58 M Y F+ TL LGPV IGSGEK T KEY E ++ YFPDM LY I +F Sbjct 1 MKDYHTKFDFTLLVLGPVHIGSGEKYTKKEYVYENNKYYFPDMGRLYLRIKDEPGLNSAF 60 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKK- 117 AF+ + T L E++ N++ LD GY + E ++S GR ++ Sbjct 61 TAFMTEINDGSRTTTLGEFLSANSI-LD-RDFGGYSISESGYEFEKSS-GRSWNSRNREP 117 Query 118 ---LTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQ 174 LNEI AF+KD GRPY+PGS++KG +R+I + Sbjct 118 GAGRNLNEISAFVKDSYGRPYIPGSSLKGAIRTILIN----------------------- 154 Query 175 YGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGK-PD 233 E+F+ ++ P +++F IR++DS + +L + QK D N + Sbjct 155 --EKFKTDDV---------PWKDGDNIFNEIRISDSKPISVDNLTLVQKWDYNAKKNCSN 203 Query 234 GLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMY 293 LP++RE L P T I + +S AR + +E L+ A S Q ++ + Y Sbjct 204 SLPIWRESLKPLTRIEFTITT-SSERAR-------KLIENLSHYAKSFYQRYKNKFLSAY 255 Query 294 PG--VNAIVGPIVYLGGGAGYRSKT------FVTDQDDMAKVLDAQFGKVVKHVDKTREL 345 P + + +YLG G+G +K Q+ K + + V+K + + +++ Sbjct 256 PDRVIQKNIDCPIYLGAGSGLWTKVDYHHVRIDKIQEKSYKKMKMKGNGVLK-LARYKKV 314 Query 346 RVSPLVLKRTKIDN-ICYEMGQCELSIRRAE 375 ++ K + N + YEMG+C SI+ + Sbjct 315 KIKTKDGKSIHLTNDVFYEMGKCGFSIKEVD 345 >gi|116627770|ref|YP_820389.1| hypothetical protein STER_0977 [Streptococcus thermophilus LMD-9] gi|116101047|gb|ABJ66193.1| CRISPR-associated protein, Csm5 family [Streptococcus thermophilus LMD-9] Length=357 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 111/394 (29%), Positives = 174/394 (45%), Gaps = 57/394 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKR--KSF 58 M + F+L+L L P+ IG+GEK TS+E+ E + YFPDM Y + KR + F Sbjct 1 MKNDYRTFKLSLLTLAPIHIGNGEKYTSREFIYENKKFYFPDMGKFYNKM-VEKRLAEKF 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 EAF++ T L ++ N ++ GY + +E R G Sbjct 60 EAFLIQTRPNARNNRLISFLNDN--RIAERSFGGYSISETGLESDRNPNSAGA------- 110 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 +NE++ FI+D G PY+PGS++KG +R+I + + V G +E+ Sbjct 111 -INEVNKFIRDAFGNPYIPGSSLKGAIRTILMNTTPKWNNENAVNDFGRFPKEN------ 163 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVH-GKPDGLPL 237 K L G + D DLF AIRV+DS L++ QK D + K LPL Sbjct 164 ---KNLIPWGPKKGKEYD---DLFNAIRVSDSKPFDNKSLILVQKWDYSAKTNKAKPLPL 217 Query 238 FRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG-- 295 +RE ++P T I + T E R +E L + A QA Y +Y+A + Sbjct 218 YRESISPLTKIEFEITTTTD--------EAGRLIEELGKRA----QAFYKDYKAFFLSEF 265 Query 296 ----VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLV 351 + A + +YLG G+G +KT D +L ++ ++ + K L+++ Sbjct 266 PDDKIQANLQYPIYLGAGSGAWTKTLFKQADG---ILQRRYSRMKTKMVKKGVLKLTKAP 322 Query 352 LKRTKIDN----------ICYEMGQCELSIRRAE 375 LK KI + YEMG+ I+ + Sbjct 323 LKTVKIPSGNHSLVKNHESFYEMGKANFMIKEID 356 >gi|327469968|gb|EGF15432.1| hypothetical protein HMPREF9386_0579 [Streptococcus sanguinis SK330] Length=378 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 121/398 (31%), Positives = 185/398 (47%), Gaps = 53/398 (13%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYAD-IPAHKRKSFE 59 M T + F+LTL LGPV IGSG+ T++EY +EGD YFPDM LLY + I + F+ Sbjct 1 MKTKYRKFKLTLWTLGPVHIGSGQLHTAREYILEGDEYYFPDMTLLYDELIKRGIDEKFQ 60 Query 60 AFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLT 119 F++++D T + +++ + + GY +K +E + + T Sbjct 61 KFLIDSD--NKTNRISDFLAEHGIT--KRNFGGYRLKATGLEKPKGENVPRNQETTDPGE 116 Query 120 LNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERF 179 +N +H F++D G PYVPGS++KG +R+I + + H + G + Sbjct 117 INGVHQFMRDCYGNPYVPGSSLKGAIRTILMNTHWHSTDFKQENKKGKIVENKKAIPWGP 176 Query 180 ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMN-VHGKPDGLPLF 238 R++ + +P +D+F IRV+DS L DL++ QK D H KP L ++ Sbjct 177 TRRQRHEKIKP-------FDDIFNEIRVSDSQPLTNDDLILVQKWDFTPDHTKPHSLSIY 229 Query 239 RECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETA-----ASVNQARYAEYRAM- 292 RE L PGT + ++ TS + G R GE + +L E A Y Y+ Sbjct 230 REALRPGTKMEFEII--TSLGFKDG-RAGE-LISSLGEYAQKFYFGMTEDEGYEGYKDFF 285 Query 293 ---YPG---VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRE-- 344 +P N + P+ YLGGG+G +KT D G+V K K E Sbjct 286 LKKFPNHLIQNNLSYPL-YLGGGSGAWTKTVFRQAD----------GEVQKRHKKMSERG 334 Query 345 ---LRVSP-LVLKRTK-----IDNI--CYEMGQCELSI 371 L +P V+K TK I+N YEMG+ +I Sbjct 335 ALKLTKAPQQVIKTTKGEKSLINNAQNFYEMGKTCFTI 372 >gi|312278325|gb|ADQ62982.1| CRISPR-associated protein, Csm5 family [Streptococcus thermophilus ND03] Length=357 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 110/394 (28%), Positives = 174/394 (45%), Gaps = 57/394 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKR--KSF 58 M + F+L+L L P+ IG+GEK TS+E+ E + YFPDM Y + KR + F Sbjct 1 MKNDYRTFKLSLLTLAPIHIGNGEKYTSREFIYENKKFYFPDMGKFYNKM-VEKRLAEKF 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 EAF++ T L ++ N ++ GY + +E + G Sbjct 60 EAFLIQTRPNARNNRLISFLNDN--RIAERSFGGYSISETGLESDKNPNSAGA------- 110 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 +NE++ FI+D G PY+PGS++KG +R+I + + V G +E+ Sbjct 111 -INEVNKFIRDAFGNPYIPGSSLKGAIRTILMNTTPKWNNENAVNDFGRFPKEN------ 163 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVH-GKPDGLPL 237 K L G + D DLF AIRV+DS L++ QK D + K LPL Sbjct 164 ---KNLIPWGPKKGKEYD---DLFNAIRVSDSKPFDNKSLILVQKWDYSAKTNKAKPLPL 217 Query 238 FRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG-- 295 +RE ++P T I + T E R +E L + A QA Y +Y+A + Sbjct 218 YRESISPLTKIEFEITTTTD--------EAGRLIEELGKRA----QAFYKDYKAFFLSEF 265 Query 296 ----VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLV 351 + A + +YLG G+G +KT D +L ++ ++ + K L+++ Sbjct 266 PDDKIQANLQYPIYLGAGSGAWTKTLFKQADG---ILQRRYSRMKTKMVKKGVLKLTKAP 322 Query 352 LKRTKIDN----------ICYEMGQCELSIRRAE 375 LK KI + YEMG+ I+ + Sbjct 323 LKTVKIPSGNHSLVKNHESFYEMGKANFMIKEID 356 >gi|339278117|emb|CCC19865.1| hypothetical protein STH8232_1166 [Streptococcus thermophilus JIM 8232] Length=357 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 111/394 (29%), Positives = 174/394 (45%), Gaps = 57/394 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKR--KSF 58 M + F+L+L L P+ IG+GEK TS+E+ E + YFPDM Y + KR + F Sbjct 1 MKNDYRTFKLSLLTLAPIHIGNGEKYTSREFIYENKKFYFPDMGKFYNKM-VEKRLAEKF 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 EAF++ T L ++ N ++ GY + +E R G Sbjct 60 EAFLIQTRPNARNNRLISFLNDN--RIAERSFGGYSISETGLESDRNPNSAGA------- 110 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 +NE++ FI+D G PY+PGS++KG +R+I + + V G +E+ Sbjct 111 -INEVNKFIRDAFGNPYIPGSSLKGAIRTILMNTTPKWNNENAVNDFGRFPKEN------ 163 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVH-GKPDGLPL 237 K L G + D DLF AIRV+DS L++ QK D + K LPL Sbjct 164 ---KNLIPWGPKKGKEYD---DLFNAIRVSDSKPFDNKRLILVQKWDYSAKTNKAKPLPL 217 Query 238 FRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG-- 295 +RE ++P T I + T E R +E L + A QA Y +Y+A + Sbjct 218 YRESISPLTKIEFEITTTTD--------EAGRLIEELGKRA----QAFYKDYKAFFLSEF 265 Query 296 ----VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLV 351 + A + +YLG G+G +KT D +L ++ ++ + K L+++ Sbjct 266 PDDKIQANLQYPIYLGAGSGAWTKTLFKQADG---ILQRRYSRMKTKMVKKGVLKLTKAP 322 Query 352 LKRTKIDN----------ICYEMGQCELSIRRAE 375 LK KI + YEMG+ I+ + Sbjct 323 LKIVKIPSGNHSLIKNHESFYEMGKANFMIKEID 356 >gi|325687526|gb|EGD29547.1| hypothetical protein HMPREF9381_1060 [Streptococcus sanguinis SK72] Length=378 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 115/392 (30%), Positives = 187/392 (48%), Gaps = 41/392 (10%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYAD-IPAHKRKSFE 59 M T + F+LTL LGPV IGSG+ T++EY +EGD YFPDM LLY + I + F+ Sbjct 1 MKTKYRKFKLTLWTLGPVHIGSGQLHTAREYILEGDEYYFPDMTLLYDELIKRGIDEKFQ 60 Query 60 AFVMNTDGAQATAPLKEWVEPNAV-KLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 F++ D T +++++ + + K D GY +K +E + + T Sbjct 61 KFLI--DSENKTNRIRDFLAEHGITKRDFG---GYRLKATGLENPKEENATRNQETTNPG 115 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 +N +H F++D G PYVPGS++KG +R+I + + H ++ + GE Sbjct 116 EINGVHQFMRDCYGNPYVPGSSLKGAIRTILMNTHWHST----------DFKQENKKGEI 165 Query 179 FERKELRKSG---RPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHG-KPDG 234 E K+ G R + + +D+F IRV+DS L DL++ QK D KP Sbjct 166 VENKKAIPWGPTRRQRYKELEPFDDIFNEIRVSDSQPLTNDDLILVQKWDFTPDDTKPHS 225 Query 235 LPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAAS-----VNQARYAEY 289 L ++RE L PGT + ++ T+ + G R GE + +L E A Y Y Sbjct 226 LSIYREALRPGTKMEFEII--TALGFKDG-RAGE-LVASLGEYAQKFYFGVTEDEGYEGY 281 Query 290 RAM----YPG---VNAIVGPIVYLGGGAGYRSKTFVTDQD-DMAKVLDAQFGKVVKHVDK 341 + +P N + P+ YLGGG+G +KT D ++ + + G+ + K Sbjct 282 KDFFLKKFPNHLIQNNLSYPL-YLGGGSGAWTKTVFRQADGEVQQRHEKMSGRGALKLTK 340 Query 342 TRELRVSPLVLKRTKIDNI--CYEMGQCELSI 371 + + +++ I+N YEMG+ +I Sbjct 341 APQQVIKTTKGEKSLINNAQNFYEMGKTCFTI 372 >gi|55822918|ref|YP_141359.1| hypothetical protein str0964 [Streptococcus thermophilus CNRZ1066] gi|55738903|gb|AAV62544.1| hypothetical protein str0964 [Streptococcus thermophilus CNRZ1066] Length=357 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/394 (28%), Positives = 174/394 (45%), Gaps = 57/394 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKR--KSF 58 M + F+L+L L P+ IG+GEK TS+E+ E + YFPDM Y + KR + F Sbjct 1 MKNDYRTFKLSLLTLAPIHIGNGEKYTSREFIYENKKFYFPDMGKFYNKM-VEKRLAEKF 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 EAF++ T L ++ N ++ GY + +E + G Sbjct 60 EAFLIQTRPNARNNRLISFLNDN--RIAERSFGGYSISETGLESDKNPDSTGA------- 110 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 +NE++ FI+D G PY+PGS++KG +R+I + + V G +E+ Sbjct 111 -INEVNKFIRDAFGNPYIPGSSLKGAIRTILMNTTPKWNNENAVNDFGRFPKEN------ 163 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVH-GKPDGLPL 237 K L G + D DLF AIRV+DS L++ QK D + K LPL Sbjct 164 ---KNLIPWGPKKGKEYD---DLFNAIRVSDSKPFDNKSLILVQKWDYSAKTNKAKPLPL 217 Query 238 FRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG-- 295 +RE ++P T I + T E R +E L + A QA Y +Y+A + Sbjct 218 YRESISPLTKIEFEITTTTD--------EAGRLIEELGKRA----QAFYKDYKAFFLSEF 265 Query 296 ----VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLV 351 + A + +YLG G+G +KT D +L ++ ++ + K L+++ Sbjct 266 PDDKIQANLQYPIYLGAGSGAWTKTLFKQADG---ILQRRYSRMKTKMVKKGVLKLTKAP 322 Query 352 LKRTKIDN----------ICYEMGQCELSIRRAE 375 LK KI + YEMG+ I+ + Sbjct 323 LKTVKIPSGNHSLVKNHESFYEMGKANFMIKEID 356 >gi|55820999|ref|YP_139441.1| hypothetical protein stu0964 [Streptococcus thermophilus LMG 18311] gi|55736984|gb|AAV60626.1| hypothetical protein stu0964 [Streptococcus thermophilus LMG 18311] Length=357 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/394 (28%), Positives = 174/394 (45%), Gaps = 57/394 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKR--KSF 58 M + F+L+L L P+ IG+GEK TS+E+ E + YFPDM Y + KR + F Sbjct 1 MKNDYRTFKLSLLTLAPIHIGNGEKYTSREFIYENKKFYFPDMGKFYNKM-VEKRLAEKF 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 EAF++ T L ++ N ++ GY + +E + G Sbjct 60 EAFLIQTRPNARNNRLISFLNDN--RIAERSFGGYSISETGLESDKNPDSAGA------- 110 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 +NE++ FI+D G PY+PGS++KG +R+I + + V G +E+ Sbjct 111 -INEVNKFIRDAFGNPYIPGSSLKGAIRTILMNTTPKWNNENAVNDFGRFPKEN------ 163 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVH-GKPDGLPL 237 K L G + D DLF AIRV+DS L++ QK D + K LPL Sbjct 164 ---KNLIPWGPKKGKEYD---DLFNAIRVSDSKPFDNKSLILVQKWDYSAKTNKAKPLPL 217 Query 238 FRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG-- 295 +RE ++P T I + T E R +E L + A QA Y +Y+A + Sbjct 218 YRESISPLTKIEFEITTTTD--------EAGRLIEELGKRA----QAFYKDYKAFFLSEF 265 Query 296 ----VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLV 351 + A + +YLG G+G +KT D +L ++ ++ + K L+++ Sbjct 266 PDDKIQANLQYPIYLGAGSGAWTKTLFKQADG---ILQRRYSRMKTKMVKKGVLKLTKAP 322 Query 352 LKRTKIDN----------ICYEMGQCELSIRRAE 375 LK KI + YEMG+ I+ + Sbjct 323 LKTVKIPSGNHSLVKNHESFYEMGKANFMIKEID 356 >gi|240143670|ref|ZP_04742271.1| CRISPR-associated RAMP protein, Csm5 family [Roseburia intestinalis L1-82] gi|257204347|gb|EEV02632.1| CRISPR-associated RAMP protein, Csm5 family [Roseburia intestinalis L1-82] Length=373 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 114/387 (30%), Positives = 173/387 (45%), Gaps = 45/387 (11%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKE--YHVEGDRVYFPDMELLYADIPAHKR-KS 57 M YLK + + + L PV+IGSGEK KE Y V P++E +Y D+ K Sbjct 1 MRDYLKHYRVKICVLSPVYIGSGEKIGKKEHIYMPWNHHVIIPNVEKMYMDLQKKGLGKE 60 Query 58 FEAFVMNTDGAQATAPLKEWVEPNAV-KLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRK 116 F ++M DG L +W+ + + + D + + YE+ G + +R + Sbjct 61 FADYMM--DGRPKEPSLSQWLGQHKMQREDYERWKLYEMDAGEAFVSQTARPK------- 111 Query 117 KLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHK------RTAQPVRVPGHQTR 170 EI AF+KD G PYVPGST+KGM R+ + + K RT + ++ + Sbjct 112 -----EIEAFVKDAYGMPYVPGSTLKGMFRTALIADEIQKCPEKYERTGREIQSASAERA 166 Query 171 EHRQY----GERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDM 226 +Q +R E++ R +P +AVND + V DS + L + QK+D+ Sbjct 167 SRKQCLARETKRLEQQIFYTLNRDEKKPANAVNDNLSGLHVGDSQPISVDQLTLSQKIDV 226 Query 227 NVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARY 286 + G L + RE L PGT I V +DT+ + E +E L N+ Y Sbjct 227 TLDGTEKPLNVLRETLIPGTEICFDVSIDTTICP----YQMEDIIEALNIFQNICNRYFY 282 Query 287 AEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQ--DDMAKVLDAQF----GK--VVKH 338 A + N V+LGGG G+ SKT + + KV+D F GK +V Sbjct 283 ARFHWEAKEKNT-----VWLGGGCGFLSKTVLYPLLGSNAVKVVDNVFKNTLGKNYIVHK 337 Query 339 VDKTRELRVSPLVLKRTKIDNICYEMG 365 K +L+++P K TK Y MG Sbjct 338 HTKDLQLKLAPHACKCTKYQGKLYHMG 364 >gi|125718067|ref|YP_001035200.1| hypothetical protein SSA_1247 [Streptococcus sanguinis SK36] gi|125497984|gb|ABN44650.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] gi|327474442|gb|EGF19848.1| hypothetical protein HMPREF9391_0568 [Streptococcus sanguinis SK408] Length=378 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 116/398 (30%), Positives = 182/398 (46%), Gaps = 53/398 (13%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYAD-IPAHKRKSFE 59 M T + F+LTL LGPV IGSG+ T++EY +EGD YFPDM LLY + I + F+ Sbjct 1 MKTKYRKFKLTLWTLGPVHIGSGQLHTAREYILEGDEYYFPDMTLLYDELIKRGIDEKFQ 60 Query 60 AFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLT 119 F++++D T + +++ + + GY +K +E + + T Sbjct 61 KFLIDSD--NKTNRISDFLAEHGIT--KRNFGGYRLKATGLEKPKGENVPRNQETTDPGE 116 Query 120 LNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERF 179 +N +H F++D G PYVPGS++KG +R+I + + H + G + Sbjct 117 INGVHQFMRDCYGNPYVPGSSLKGAIRTILMNTHWHSTDFKQENKKGKIVENKKAIPWGP 176 Query 180 ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHG-KPDGLPLF 238 R++ + +P +D+F IRV+DS L DL++ QK D KP L ++ Sbjct 177 TRRQRHEKIKP-------FDDIFNEIRVSDSQPLTNDDLILVQKWDFTPDDTKPHSLSIY 229 Query 239 RECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASV--------NQARYAEYR 290 RE L PGT + ++ T+ +GG R GE + +L E A Y Y+ Sbjct 230 REALRPGTKMEFEII--TALGFKGG-RAGE-LVASLGEYAQKFYFGVTEDEGYEGYEGYK 285 Query 291 AM----YPG---VNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTR 343 +P N + P+ YLGGG+G +KT D G+V K K Sbjct 286 DFFLKKFPNHLIQNNLSYPL-YLGGGSGAWTKTVFRQAD----------GEVQKRHKKMS 334 Query 344 E-----LRVSPLVLKRTKIDNI-----CYEMGQCELSI 371 E L +P + +I+ I YEMG+ +I Sbjct 335 ERGALKLTKAPFLTVDGEIELINNAENFYEMGKTCFTI 372 >gi|331004039|ref|ZP_08327521.1| csm5 family CRISPR-associated ramp protein [Lachnospiraceae oral taxon 107 str. F0167] gi|330411625|gb|EGG91033.1| csm5 family CRISPR-associated ramp protein [Lachnospiraceae oral taxon 107 str. F0167] Length=381 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 100/407 (25%), Positives = 183/407 (45%), Gaps = 75/407 (18%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYA-DIPAHKRKSFE 59 M +LK + + L+ +GPVFIGSGE KE + D+V D +L++ + + K ++ Sbjct 1 MGDFLKKYNIELKTVGPVFIGSGETINKKEALFKKDKVVIIDTKLMFEYFLKRNLLKQYQ 60 Query 60 AFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRAS-----RGRGGRMT 114 ++++T + L + + N + D ++ + +K S+ +++ +GRG Sbjct 61 EYMLDT-----SKDLAVFFKDNNI--DEKIYKTWNIKELSLGDTKSTGDGDVKGRG---- 109 Query 115 RKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQ 174 I F++D GR YVPGS++KGMLR+I + + + ++ G + Sbjct 110 --------IVRFVRDGNGRVYVPGSSLKGMLRTILAGEYIIQNSNCGIK--GKLDETAWE 159 Query 175 YGERFERKELRKSGR----------------PNT----RPQDAVNDLFQAIRVTDSPALR 214 G+ RKE K+ + PN+ + + +ND + V+DS + Sbjct 160 LGKNPRRKEFEKAYKNTLTDIDVNIFHKDLFPNSDGKNKLDNKINDTLRGFMVSDSEYIS 219 Query 215 TSDLLICQKMDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPT---------ARGGWR 265 D+ +CQK+D++ G LPL+REC+ P T+I + +D+S + G + Sbjct 220 DEDMCVCQKVDISTDGTEIALPLYRECIKPDTTIRFSITIDSSFCDYTKPDIIESIGSFY 279 Query 266 EGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQDDMA 325 E + A +++ RY +LGGGAG+ SKT + + Sbjct 280 ENYWNKVSKQFKKAPISKDRYT----------------CFLGGGAGFESKTIIYSSFERT 323 Query 326 KVLDAQ---FGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 K +D + + +++ VSP V+ TK ++ + G C L Sbjct 324 KAVDFTSNILSVMFPNAKHDKDMEVSPRVINCTKFEHTKHLFGACSL 370 >gi|322387547|ref|ZP_08061156.1| hypothetical protein HMPREF9423_0554 [Streptococcus infantis ATCC 700779] gi|321141414|gb|EFX36910.1| hypothetical protein HMPREF9423_0554 [Streptococcus infantis ATCC 700779] Length=358 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 105/385 (28%), Positives = 171/385 (45%), Gaps = 57/385 (14%) Query 8 FELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYAD-IPAHKRKSFEAFVMNTD 66 F+ +L + P+ IG+GEK TS+E+ E YFPDM Y + + FE F+ T Sbjct 8 FQFSLLAMAPIHIGNGEKYTSREFIYENGYFYFPDMGKFYNRMVEKGYDQKFERFLQETK 67 Query 67 GAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHAF 126 L +++ N ++ GY + +E + +R K T+NE+ F Sbjct 68 PNARNNRLISFLDDN--RISNRDFGGYRIVETGLEIEKNNR------DSKLGTINEVAKF 119 Query 127 IKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQ---YGERFERKE 183 I+DP G PY+PGS++KG +R+I + + + G +E+++ +G Sbjct 120 IRDPFGSPYIPGSSLKGAIRTILMNTNPDWNNKNAIDFRGRGPKENKKMIPWGA------ 173 Query 184 LRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDM---NVHGKPDGLPLFRE 240 K G+ NDLF AIRV+DS +++ QK D ++ KP LPL+RE Sbjct 174 --KKGQ-------EFNDLFNAIRVSDSKPFNNEQIILVQKWDYSAKSLTAKP--LPLYRE 222 Query 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG---VN 297 + P T I+ + T +E +E L + A QA Y EY+ + N Sbjct 223 AIVPLTRINFTITTTT--------KEAGILIEELGQRA----QAFYKEYKEFFLSDFPEN 270 Query 298 AIVGPI---VYLGGGAGYRSKTFVTDQDDM-----AKVLDAQFGKVVKHVDKT--RELRV 347 I + +YLG G+G +KT D + +++ GK V + K + ++ Sbjct 271 KIQPNLQYPIYLGAGSGAWTKTLFQQADGILQKRYSRMKTKMVGKGVLKLTKAPMKSVKT 330 Query 348 SPLVLKRTKIDNICYEMGQCELSIR 372 + K D YEMG+ I+ Sbjct 331 TQATRKLIMNDESFYEMGKANFIIK 355 >gi|229826462|ref|ZP_04452531.1| hypothetical protein GCWU000182_01835 [Abiotrophia defectiva ATCC 49176] gi|229789332|gb|EEP25446.1| hypothetical protein GCWU000182_01835 [Abiotrophia defectiva ATCC 49176] Length=381 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 114/402 (29%), Positives = 185/402 (47%), Gaps = 56/402 (13%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDR--VYFPDMELLYADIPAHKRKS- 57 M YL +EL ++ L PV+IGSG +EY + + V F D+E L+ I + S Sbjct 1 MEDYLINYELKIKILTPVYIGSGYTVGKREYIHDKSKNLVSFLDLEKLFKGILDNGLYSE 60 Query 58 FEA-FVMNTDGAQATAPLKEWVEPNAVKLDP-AKHRGYEVKIGSIEPRRASRGRGGRMTR 115 +E F + + LK+++E + D ++ Y +GS Sbjct 61 YEKYFTADNKNREMNVELKQFLERAGIGEDKYSEWITYSEYMGS---------------- 104 Query 116 KKLTL---NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREH 172 L+L +EI FIKD G PY+PGS++KG +R+I + + K+ + R +E Sbjct 105 SNLSLQNTHEIQTFIKDAYGNPYIPGSSLKGAIRTILESNYIRKKYNEFDRSRAEVKKEG 164 Query 173 RQYGERF---------ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQK 223 + R+ E+ R+ + ++ ND+ + I V DS ++ + L ICQK Sbjct 165 MKGKTRYMSVPQNHLKEKVFHRQITDERVKLENMQNDIMRGIIVGDSLSIDKNSLCICQK 224 Query 224 MDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQ 283 +D++ G L + RECL PGT ++ + +D S R + G++F L + A +N Sbjct 225 IDLSTKGNKKSLNVLRECLKPGTVVTVPLTID-SKIVRNMY--GKKF--DLEDIKADINM 279 Query 284 ARYAEYRAMYPGVNAIVGPIV------YLGGGAGYRSKTF---VTDQDDMAKVLDAQFGK 334 Y Y+ Y I+ YLGGG+GY SKT + ++D+ KV+ + Sbjct 280 F-YKNYKDEYITKFKNFPQIIEEKNAFYLGGGSGYVSKTVTHSLFNEDNATKVVSEILNE 338 Query 335 VVKHVDK------TRELRVSPLVLKRT-KIDNICYEMGQCEL 369 V K L VSP LK T ++N+C +MG C + Sbjct 339 VFTQKSKPSANKDDEVLGVSPHTLKCTYYLENLC-QMGLCRI 379 >gi|270292490|ref|ZP_06198701.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270278469|gb|EFA24315.1| conserved hypothetical protein [Streptococcus sp. M143] Length=362 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/329 (32%), Positives = 147/329 (45%), Gaps = 56/329 (17%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPA----HKRK 56 M T + F+ TL + P+ IG+GEK TS+E+ E YFPDM Y + HK Sbjct 1 MKTEYRTFQFTLLAMAPIHIGNGEKYTSREFIYENGYFYFPDMGKFYNRMVEKGYDHK-- 58 Query 57 SFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRK 116 FE F+ T L ++E N ++ GY + +E + RGG Sbjct 59 -FERFLQETKPNARNNRLISFLEDN--RISDRNFGGYRIIETKLETNN-NYLRGG----- 109 Query 117 KLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYG 176 LN++ FI+DP G PY+PGS++KG +R+I + + P + Q Sbjct 110 --ALNQVSKFIRDPFGNPYIPGSSLKGAIRTILMNT-----------NPDWNNKNVLQCK 156 Query 177 ERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVH---GKPD 233 + E K L G + D DLF AIRV+DS L++ QK D KP Sbjct 157 K--ENKSLIPWGAKKGQDYD---DLFNAIRVSDSKPFSNKSLILVQKWDHKAKPPLAKP- 210 Query 234 GLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMY 293 LPL+RE +AP T I+ + T +E +E L + A QA Y EY+ + Sbjct 211 -LPLYREAIAPSTKINFTITTTT--------KEAGILIEELGKRA----QAFYKEYKNFF 257 Query 294 PG---VNAIVGPI---VYLGGGAGYRSKT 316 N I I +YLG G+G +KT Sbjct 258 LSDFPENKIQPNIQYPIYLGAGSGAWTKT 286 >gi|322375482|ref|ZP_08049995.1| CRISPR-associated RAMP protein [Streptococcus sp. C300] gi|321279745|gb|EFX56785.1| CRISPR-associated RAMP protein [Streptococcus sp. C300] Length=364 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 104/393 (27%), Positives = 166/393 (43%), Gaps = 62/393 (15%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYAD-IPAHKRKSFE 59 M T + F+ TL + P+ GSG+K TS+E+ E YFPDM Y + + FE Sbjct 1 MKTEYRTFQFTLLAMAPIHTGSGDKYTSREFIYEDGYFYFPDMGKFYNRMVEKGYDQKFE 60 Query 60 AFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLT 119 F+ + + L ++E N ++ GY +K E + + K T Sbjct 61 RFLQERKASASNNRLISFLEDN--RISDRDFGGYRIKETGFETEK------NNIDSKLGT 112 Query 120 LNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERF 179 +NE+ F++D G PY+PGS++KG +R+I + + V+ ++ Sbjct 113 INEVSKFMRDSYGNPYIPGSSLKGAIRTILMNTNPDWNNENVVK-------------DKK 159 Query 180 ERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHG---KPDGLP 236 E K L G + D DLF IRV+DS R L++ QK D KP LP Sbjct 160 ENKSLIPWGAKKGQNYD---DLFNTIRVSDSKPFRNDSLILVQKWDHKATTPLVKP--LP 214 Query 237 LFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG- 295 L+RE L PG I+ ++ T +E +E L E A Y +Y+ + Sbjct 215 LYREALTPGKIINFKITTTT--------KEAGELIEKLGEKAFEF----YNDYKIFFLKD 262 Query 296 --VNAIVGPI---VYLGGGAGYRSKTFVTDQDDMAKVLDAQF--GKVVKHVDK------- 341 N I I +YLG G+G +KT D +L ++ + + V+K Sbjct 263 FPENKIQPNIQYPIYLGAGSGAWTKTIFKQAKD---ILQERYENSRTTRMVEKGVLKLTK 319 Query 342 --TRELRVSPLVLKRTKIDNICYEMGQCELSIR 372 + ++ + K + YEMG+ I+ Sbjct 320 APMKSVKTTQATRKLIMNNESFYEMGKANFMIK 352 >gi|225018979|ref|ZP_03708171.1| hypothetical protein CLOSTMETH_02930 [Clostridium methylpentosum DSM 5476] gi|224948259|gb|EEG29468.1| hypothetical protein CLOSTMETH_02930 [Clostridium methylpentosum DSM 5476] Length=373 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 102/397 (26%), Positives = 179/397 (46%), Gaps = 58/397 (14%) Query 5 LKPFELTLRCLGPVFIGSGEKRTSKEY--HVEGDRVYFPDMELLYADIPAHKR-KSFEAF 61 ++ +E+ L PV IG G K + KEY + ++V D+ + + K ++ F Sbjct 2 IQRYEVVLTTQSPVHIGCGTKISKKEYVYYQNSNQVKIIDLVKFFRFLDEKKLVDDYQLF 61 Query 62 VMNTDGAQATAPLKEWVEPNAVKLDPAKH-RGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 A + L +W + V L+ ++ Y VK K Sbjct 62 -----AADSYQSLGKWFKEKKVNLNQVENLTAYTVK---------------NHANNKDDE 101 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 EIH F+KD G PY+PGS++KG LR+ L LV R+ + + R++ + +++ Sbjct 102 KEIHMFLKDVYGNPYIPGSSLKGALRTAILSGLVKNRSQE--LFSAQKFRDNFKVSKKYR 159 Query 181 RKELRKSGRP------NT-----------RPQDAVNDLFQAIRVTDSPALRTSDLLICQK 223 +KE+ KS + NT +A+ + + I ++DS + S L IC K Sbjct 160 KKEMNKSSQWIENRVLNTLQLKNRKGNWINHSNALTSILRGISISDSAPIDKSRLAICPK 219 Query 224 MDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQ 283 +D ++ P + L REC+ P T + + +D ++ G +E L ++ S Sbjct 220 IDYSIQQNPSKVMLLRECIVPQTEVRFYMSLDPVYLSKAGVD-----IEFLQKSIQSFYM 274 Query 284 ARYAEYRAMYPGVNAIVGPI--VYLGGGAGYRSKTFVT----DQ--DDMAKVLDAQFGKV 335 + + + +P P ++LGGG G++SKT DQ + ++++L +F + Sbjct 275 LQRDCWLSKFPSWKENGEPHCRLFLGGGTGFQSKTITQSLYGDQALNLISELLQNRFNEH 334 Query 336 VKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSIR 372 ++D + VSP LK TK D Y MG+CE++ R Sbjct 335 KHNLDVGQG--VSPRKLKCTKYDGETYLMGECEVAFR 369 >gi|253578036|ref|ZP_04855308.1| CRISPR-associated protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850354|gb|EES78312.1| CRISPR-associated protein [Ruminococcus sp. 5_1_39BFAA] Length=374 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/399 (27%), Positives = 175/399 (44%), Gaps = 64/399 (16%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYH---------VEGDRVYFPDMELLYADIP 51 M LK +++ L+ GPVF+G G + KEY ++G + Y +L Sbjct 11 MERKLKTYQIHLKVNGPVFVGDGNEIQKKEYMFLNRNTIGVIDGAKFYMLAKKL------ 64 Query 52 AHKRKSFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGG 111 H + FE F+++ LK W N V + K+ V+ ++ R +G+ Sbjct 65 -HLQNDFERFMID----DTREDLKHWCFRNHVSQNDLKNCMKYVE--NVGDRSEEKGKLQ 117 Query 112 RMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYL-QSLVHKRTAQPVRVPGHQTR 170 MT I DP G PY+PGS++KGMLR+I L + ++ R + R Q R Sbjct 118 VMT-----------CITDPYGNPYIPGSSLKGMLRTILLGRDILQHR--EKYRTDTRQIR 164 Query 171 EHRQYGERFERK-------ELRKSGRPNTRP--QDAVN-DLFQAIRVTDSPALRTSDLLI 220 + R R+ ++ K+ + R ++ V+ D+ + V DS L D+++ Sbjct 165 SDLEVN-RINRRILNNNIVKIEKNAFNSVRSSGKETVDFDIMSGVIVGDSEPLSREDIIL 223 Query 221 CQKMDMNVHGKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAAS 280 CQK + + G L L REC+ PGT I + +D + + + E Sbjct 224 CQKWEQHTDGTYKTLNLLRECIKPGTVIKSTLTIDETLCNIKK--------KDILEAVQL 275 Query 281 VNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFV-------TDQDDMAKVLD-AQF 332 + Y ++ +P + V+LGGG+G+ SKT + + + + D Sbjct 276 FYEQYYQNFQKKFPRSDRRKPNTVFLGGGSGFVSKTVIYPLFGEKEGIETVKNIFDRTNV 335 Query 333 GKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSI 371 K +H TR + VSP +LK T+ Y MG+CEL+I Sbjct 336 PKTHQHYKDTR-MGVSPHILKCTRYQGKEYMMGECELNI 373 >gi|334126727|ref|ZP_08500675.1| csm5 family CRISPR-associated ramp protein [Centipeda periodontii DSM 2778] gi|333391137|gb|EGK62258.1| csm5 family CRISPR-associated ramp protein [Centipeda periodontii DSM 2778] Length=404 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 114/403 (29%), Positives = 171/403 (43%), Gaps = 58/403 (14%) Query 9 ELTLRCLGPVFIGSGEKRTSKEYHVEG--DRVYFPDMELLYADIPAHKRKSFEAFVMNTD 66 E L C+ PV GSGEKR + EY + + V FP+ E + + A + Sbjct 9 EYELTCIAPVHTGSGEKRRAFEYLYDSRKNEVAFPN-ESKWIVLLAQCGLMDDFARAIEH 67 Query 67 GAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHAF 126 GA L+EW+ N VK E + SI R+A+ R + +LN+I Sbjct 68 GAFREKSLREWLLANGVK---------EGALRSIVLRKAATPDLMTTARGRRSLNDIVCQ 118 Query 127 IKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYG---------- 176 GRPY+PGST+KG LR+ L V + P+R R + G Sbjct 119 TTHADGRPYIPGSTIKGALRTGLLYGAVRR---DPMRFRSFWARIRAEAGALRDKKKAWS 175 Query 177 ---ERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDM----NVH 229 E ER L P + DAV+ + +RV+D+ D ++ QK+D N Sbjct 176 RIIEEMERTTLHTLALPGAKASDAVSSALRGLRVSDAVGTGAMDTIVLQKVDATTKRNKA 235 Query 230 GKPDG-LPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAE 288 GK + LPLFREC+ G ++ + D + G ++ +E+L + + + + Sbjct 236 GKNESRLPLFRECIPAGRTLRFSITADLAMLETAGIMSLDQVMESLRDYTSDGLRLQKQV 295 Query 289 YRAMYPGVNAIVGPI--------VYLGGGAGYRSKTFV---TDQDD-----MAKVLDAQF 332 + M P P+ + LGGG G+ +KT V D D+ +A LD F Sbjct 296 FLPMNP---RFYQPLFEEAETADMLLGGGTGFLAKTLVYALADSDEEAREFIAAYLDEAF 352 Query 333 -----GKVV-KHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 G+V KH K + +SP LKR + + MG C L Sbjct 353 TERKGGRVEPKHRHKQFDRTLSPRTLKRAVMGQDDWIMGLCAL 395 >gi|295105101|emb|CBL02645.1| CRISPR-associated RAMP protein, Csm5 family [Faecalibacterium prausnitzii SL3/3] Length=383 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 99/390 (26%), Positives = 169/390 (44%), Gaps = 35/390 (8%) Query 4 YLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDR--VYFPDMELLYADIPAHKR-KSFEA 60 +L+ F+LTL+ P+F+GSG K +EY ++ V +MEL + + H + FE Sbjct 6 HLQVFDLTLKTQSPLFVGSGRKIGKREYIYSQNQGCVKILNMELFFDYMLRHDLVRQFEK 65 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 F+++++ ++ L W + D +H K+ +P R Sbjct 66 FMLSSN----SSLLDFWTRDCHLAEDWLEHP----KLMGDKPLVQYRLAVTEDVAGYNGT 117 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 EIH F +D GR Y+PGS++KG LR+ +L L+ T P + + E + F Sbjct 118 KEIHQFQRDAYGRAYIPGSSLKGALRTAWLVHLLLHETLAPGKKRTLEAFE-VNHDYVFP 176 Query 181 RKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMN---------VHGK 231 R D ++ +F+ ++V+DS + L++ + ++ G Sbjct 177 EGSYANRLRSGAAADDILDSIFRGVQVSDSAPIDNDKLILTGRTLISPLSAARVEAFDGD 236 Query 232 PDGLPLFRECLAPGTSISHRVVVDTSPTARGGW-REGERFLETLAETAASVNQARYAEYR 290 LPL++EC+ PG +I R+ +D S R + LE +AE + + + Sbjct 237 AKDLPLYQECVRPGETIRFRLTLDQSILNRYAHPITKDALLEAIAEFSRFYQDTFLSHFP 296 Query 291 AMYPGVNAIVGPIVYLGGGAGYRSKT--FVTDQDDMA-------KVLDAQFGKVVKHVDK 341 +P N P + LGGG G+ SKT + +DD A ++L Q G+ + Sbjct 297 QGHPVANIPDTPHLILGGGTGFFSKTVGYPYLKDDYAAALKWTQRILQTQHGRHEADI-- 354 Query 342 TRELRVSPLVLKRTKIDNICYEMGQCELSI 371 L VSP + Y G CE++I Sbjct 355 --SLGVSPHRARYVTYAGKRYPAGFCEVNI 382 >gi|323141259|ref|ZP_08076155.1| CRISPR-associated RAMP protein, Csm5 family [Phascolarctobacterium sp. YIT 12067] gi|322414216|gb|EFY05039.1| CRISPR-associated RAMP protein, Csm5 family [Phascolarctobacterium sp. YIT 12067] Length=387 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 107/404 (27%), Positives = 181/404 (45%), Gaps = 55/404 (13%) Query 1 MNTYLKPFE---LTLRCLGPVFIGSGEKRTSKEYHVEGDR--VYFPDMELLYADIPAHKR 55 MN+ K FE + L+ + P+ I G +K+Y + R V+F ++ + I H Sbjct 1 MNS--KQFETAKMCLKVVTPINISDGIVLGAKDYLYDSRRQKVFFLNLHQWHMFIYKHML 58 Query 56 -KSFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMT 114 + +E+++ N Q+ L EW++ +D + ++ A Sbjct 59 LEKYESYLANFRDKQS---LLEWLQMQGYDIDDVR---------TVITSEAQATVNLMDN 106 Query 115 RKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPV--------RVPG 166 KK TLN+I+ I+ P G YVPGS++KG+ R+ L SL+ KR V ++ Sbjct 107 EKKKTLNDINRHIQQPEGSLYVPGSSIKGVFRTAILYSLLQKRQDIKVKYWRQIQEKISS 166 Query 167 HQTREHRQYGERFE--RKELRKSGRP---NTRPQDAVNDLFQAIRVTDSPALRTSDLLIC 221 + + +R + + E + R N R +AV + ++V+D+ A R I Sbjct 167 NYFKPYRDFNKLISDLENEFLHTLRLVDGNIRSNNAVCSAMRGLQVSDTYASRNMQTAIL 226 Query 222 QKMD--MNVHGK--PDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAET 277 QK+D + GK P LP+FREC+ P + V ++ + + G + L+ Sbjct 227 QKVDGGFDKFGKASPKKLPIFRECMLPKAELFFDVKIEKAVMSTIGINTVDDLLKATHSF 286 Query 278 AASV----NQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFV--------TDQDDMA 325 A+V QA EY+ + GV A G + +LGG G+ SKT + T ++ + Sbjct 287 FAAVTDLLQQAFEKEYQEAFQGVAA--GNM-FLGGNTGFLSKTLLAMLAPDKDTAKNTIK 343 Query 326 KVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 +LD F K KH+ R+ ++P LK T + MG E+ Sbjct 344 VLLDKSF-KTHKHL--LRDKVIAPRTLKCTNYNGKLMLMGVAEV 384 >gi|121533436|ref|ZP_01665264.1| CRISPR-associated RAMP protein, Csm5 family [Thermosinus carboxydivorans Nor1] gi|121307995|gb|EAX48909.1| CRISPR-associated RAMP protein, Csm5 family [Thermosinus carboxydivorans Nor1] Length=394 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 101/409 (25%), Positives = 165/409 (41%), Gaps = 59/409 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEY--HVEGDRVYFPDMELLYADIPAHKR--K 56 MN +L+ + L CLGPV +GSG+K T +Y + R YF + E + + + KR Sbjct 1 MNKHLETVTIKLTCLGPVHVGSGDKLTKLQYIYDTKQRRAYFLN-ETAWIGLLSQKRLLS 59 Query 57 SFEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRK 116 SF + A + + L W N + PA+ ++ P + R Sbjct 60 SFSDRI----AAGSISDLYRWCTDNWIT--PAEIERVASGWATVAPA---------IERD 104 Query 117 KLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGH--------Q 168 LN I ++ GRPY+PGS++KG LR+ L L+ T + + + Sbjct 105 SRLLNSITPLMRGADGRPYIPGSSIKGALRTAILHHLLTSNTLSAINKHAYWQQLGDLVR 164 Query 169 TREHRQY--------------GERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALR 214 TR + R EL +DAV + + IRV+D+ Sbjct 165 TRHMSDKDKLKKIEKLTAQIESDLLHRLELFDENNKKVPAKDAVTSVMKGIRVSDAFCTA 224 Query 215 TSDLLICQKMDMNVHGKPDG------LPLFRECLAPGTSISHRVVVDTSPT-ARGGWREG 267 C ++ P G + L REC PGT+++ + V+ + T A G Sbjct 225 PKAPPTCLLRKVDWQDAPGGRDPENYIALVRECFTPGTTLTFTLTVEPALTRAIGIASPA 284 Query 268 ERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQDDM--- 324 + + A +N + A + + + + + LGGG+G+ KT + + Sbjct 285 DVLAAARSHAAHMLNIEKAAFGQRLGSLFSRMASANLILGGGSGFLDKTLLYSLATVNEA 344 Query 325 ----AKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 A +LD +F KH R+ R++P LK +N Y MG C+L Sbjct 345 RALTAALLDLRFA---KHRHVQRDSRLAPRTLKLGIYNNERYLMGVCKL 390 >gi|227890795|ref|ZP_04008600.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227867204|gb|EEJ74625.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length=328 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 93/383 (25%), Positives = 160/383 (42%), Gaps = 82/383 (21%) Query 8 FELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKS---FEAFVMN 64 +E L L PV+IGSG K TSKE+ E YFP+M+ LY + + +S FE ++++ Sbjct 9 YEFMLHTLAPVYIGSGVKATSKEFIQENGEYYFPEMDKLYLFLEKNYPESLPAFEQYLLD 68 Query 65 TDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIH 124 + + N K++ G+++K ++ L E+ Sbjct 69 SGNKTNKRKSRLIDFLNDQKIEERDFGGFKIKQNNLVK----------------NLGEVS 112 Query 125 AFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFERKEL 184 FI+D LG Y+PGS++KG +R+I R ++P +G Sbjct 113 LFIRDGLGNRYIPGSSLKGAIRTILESEYFRGR-----QIP---------WGA------- 151 Query 185 RKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRECLAP 244 K G+ A ND+F IRV+DS ++ S + +K D P L ++RE L P Sbjct 152 -KKGK-------AFNDIFNNIRVSDSSSIEESLFSVVEKWDYAKGKAPKNLNIYREALLP 203 Query 245 GTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMYPG--------V 296 VV + S GE+ + L ++ + Y Y+ + Sbjct 204 ----EQDVVFNISAI-------GEKAI-FLMNNLENIAEKHYLFYKGFFLDNGFDKKYVQ 251 Query 297 NAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTK 356 N I PI YLG G+G +K + + +D + ++ ++ ++ V L T Sbjct 252 NNINAPI-YLGAGSGIWTKINI-------RQMDKKKIDKIQIKNRMKDKGVMKLTKYPTN 303 Query 357 IDNIC------YEMGQCELSIRR 373 +++ YEMG+C +++ Sbjct 304 VNSKIVKTKDFYEMGKCNFEVKK 326 >gi|334308473|gb|EGL99459.1| CRISPR-associated protein, Csm5 family [Lactobacillus salivarius NIAS840] Length=326 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 96/379 (26%), Positives = 159/379 (42%), Gaps = 74/379 (19%) Query 8 FELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKS---FEAFVMN 64 +E L L PV IGSG K TSKE+ E YFP+M+ LY + + +S FE ++++ Sbjct 7 YEFVLHTLAPVHIGSGVKATSKEFIQENGEYYFPEMDKLYLFLEKNYPESLPTFEQYLLD 66 Query 65 TDGAQATAPLKEWVE-PNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEI 123 + G++ ++ N ++ G+++K ++ L E+ Sbjct 67 S-GSKTNKRKSRLIDFLNDQRIKKRDFGGFKIKQNNLVK----------------NLGEV 109 Query 124 HAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFERKE 183 FI+D LG Y+PGS++KG +R+I L+S E F K+ Sbjct 110 SLFIRDGLGNRYIPGSSLKGAIRTI-LES------------------------EYFRGKQ 144 Query 184 L---RKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRE 240 + KSGR +D+F IRV+DS ++ + I Q+ + P + ++RE Sbjct 145 IPWGAKSGR-------QFDDIFNNIRVSDSSSIEEMNFSIVQRWNHAKGKDPKRMNIYRE 197 Query 241 CLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAE------YRAMYP 294 L P VV + S E FL E A + Y E + Y Sbjct 198 ALLP----EQDVVFNISVIG-----EEAIFLMDNLENMAEKHYLFYKEFFLDKGFDKKYI 248 Query 295 GVNAIVGPIVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKR 354 N PI YLG G+G +KT + Q + K+ Q +K+ + + ++ + Sbjct 249 QDNT-EAPI-YLGAGSGIWTKTNIR-QMNKEKIDRIQMKNKMKNQGVMKLTKYPTNIISK 305 Query 355 TKIDNICYEMGQCELSIRR 373 YEMG+C +++ Sbjct 306 IVKTKDFYEMGKCNFEVKK 324 >gi|291460037|ref|ZP_06599427.1| CRISPR-associated RAMP protein, Csm5 family [Oribacterium sp. oral taxon 078 str. F0262] gi|291417378|gb|EFE91097.1| CRISPR-associated RAMP protein, Csm5 family [Oribacterium sp. oral taxon 078 str. F0262] Length=383 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 77/281 (28%), Positives = 120/281 (43%), Gaps = 39/281 (13%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDR------VYFPD-MELLYADIPAH 53 M YLK + + + L P+++G G+ KEY R V PD ++L Sbjct 1 MKDYLKYYRIRITALSPIYVGDGKLIGKKEYIRRNRRSRGWGTVEIPDPRKMLTCLRLLS 60 Query 54 KRKSFEAFVMNTDGAQATAPLKEWVEPNAV-KLDPAKHRGYEVKIGS--IEPRRASRGRG 110 + FE ++++ G L +W++ + + + Y + G I PR R +G Sbjct 61 CVQDFENYMLDQGGN--VPDLYQWLQAQGISEATISSWIRYSMDAGDVFIGPRNG-RNKG 117 Query 111 GRMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYL----------QSLVHKRTAQ 160 I +F KD G+PY+PGS++KGMLR+ L S + KR + Sbjct 118 ------------IESFQKDAYGKPYIPGSSIKGMLRTALLAWELGKQRESNSGIEKRVRR 165 Query 161 PVRVP-GHQTREHRQYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLL 219 V G R E E K + R +DAVN + + V DS + LL Sbjct 166 AVEGGRGKGDAFLRNQAEDLEVKVFHRPERNKENLKDAVNSVMAGLIVGDSDTISEKQLL 225 Query 220 ICQKMDMNVHG---KPDGLPLFRECLAPGTSISHRVVVDTS 257 +CQK+D + G K P+ RE L PGT + + +D + Sbjct 226 LCQKIDYSCIGDKKKERAFPILREALKPGTEVFFDLSIDET 266 >gi|313894850|ref|ZP_07828410.1| CRISPR-associated RAMP protein, Csm5 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312976531|gb|EFR41986.1| CRISPR-associated RAMP protein, Csm5 family [Selenomonas sp. oral taxon 137 str. F0430] Length=394 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 95/400 (24%), Positives = 168/400 (42%), Gaps = 58/400 (14%) Query 9 ELTLRCLGPVFIGSGEKRTSKEYHVEGDR--VYFPDMELLYADIPAHKRKSFEAFVMNTD 66 ++ L C+ PV IGSG K EY + + V+F D E ++++ R + FV D Sbjct 8 QIELNCISPVHIGSGVKLLPFEYLYDRRKRDVFFVD-EGKFSELLMRHR-LIDNFV--AD 63 Query 67 GAQATAP-LKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHA 125 Q P L W+ + ++ + +G V+ + R+ R +LN++ Sbjct 64 MRQRRPPYLLNWLTDH--RISEREMQGITVRRAKVHIRQNERS----------SLNDVAC 111 Query 126 FIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVR-------VPGHQTREHRQYGER 178 G PY+PGS++KG +R+ + L+ + + +R R+ + + Sbjct 112 LETAAGGIPYIPGSSLKGAIRTAVIYHLLRQSAHENLRRKYWGKLQDAMSARDIKAEIGK 171 Query 179 FERK-------ELRKSGRPNTRPQDAVNDLFQAIRVTDS-PALRTSDLLICQKMDMNVHG 230 +K +L+ A+ D+ + +RV D+ P + D +I QK+D + H Sbjct 172 LAKKLEEELLCQLKYVDEKGKYSDAAIQDVMRGLRVGDAMPTAKRLDTVILQKIDCSTHA 231 Query 231 KPDG-----LPLFRECLAPGTSISHRVVVDTSPTARGGWREGE---RFLETLAETAASVN 282 G + LFREC+ G+ R+ + A+ G R+ + R T + ++ Sbjct 232 NKSGRKEHSISLFRECIPIGSKFRFRITFEKEILAQIGIRDIDALIRMCRTYTASGLAMQ 291 Query 283 QARYA-EYRAMYPGVNAIVGPIVYLGGGAGYRSKTFV--------TDQDDMAKVLDAQFG 333 + + +YRA + V LGGG G+ SKT + +A +LD F Sbjct 292 EHAFGRDYRAEFVEAG---DADVMLGGGTGFLSKTIFYALAPGEEIGRKAVAALLDELFF 348 Query 334 ----KVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 + +H + ++ +SP LK T D MG C L Sbjct 349 DRRRRQPQHFHRQKDTVLSPRTLKLTWTDTDSSIMGLCAL 388 >gi|312899098|ref|ZP_07758476.1| CRISPR-associated RAMP protein, Csm5 family [Megasphaera micronuciformis F0359] gi|310619765|gb|EFQ03347.1| CRISPR-associated RAMP protein, Csm5 family [Megasphaera micronuciformis F0359] Length=408 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 101/409 (25%), Positives = 169/409 (42%), Gaps = 67/409 (16%) Query 12 LRCLGPVFIGSGEKRTSKEYHVE--GDRVYFPD----MELLY-----ADIPAHKRKSFEA 60 + CL PV IGSG+K T+ EY + +VYF D ++ LY + H R++ E Sbjct 13 IECLSPVHIGSGDKLTAVEYIFDEKARQVYFLDQARWLQFLYRKRLTDEFLRHIRRTAEQ 72 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 + + L +W+ ++ P + R IG + R ++ Sbjct 73 --LKSKDPFCGQLLWDWLTQKGIR--PDEIRNLAGTIGHVHTNNPLIDRR--------SV 120 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 N+I + D G Y+PGS++KG LR+ L S++ K + + E + R Sbjct 121 NDIARNVTDAFGSVYIPGSSIKGALRTGLLSSIILKNKEK--YTTSWKEIESTIFNAR-G 177 Query 181 RKELRKSGRPNTR----------PQD--------AVNDLFQAIRVTDSPALR-TSDLLIC 221 R +L+ G+ ++ QD +VND+ + + V+D+ + + +I Sbjct 178 RSDLKCLGKVQSKLEGLVFQRLGLQDEHGRACGGSVNDVLRGLIVSDAACVEPVCNTVIV 237 Query 222 QKMDMNVHGKPDG-----LPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAE 276 QK+D ++ K +G LPLFREC+ GT + V D G + E Sbjct 238 QKLDGSL-AKTEGMNPCRLPLFRECIPAGTRLRFSVTADLEMLKVIGIGSIDDIFSVTRE 296 Query 277 TAA-SVNQARYAEYRAM------YPGVNAIVGPIVYLGGGAGYRSKTFVTD--------Q 321 ++ +A RA N ++LGGG G++ KT + D + Sbjct 297 YVMRNLKFQEHAFTRAFGRQFFAAQAFNEAKQADLFLGGGTGFQYKTVIYDLAPDEEIGR 356 Query 322 DDMAKVLDAQF-GKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 +AK LD F K K K+++ +SP +K T MG C + Sbjct 357 AAVAKYLDLVFTNKDSKPQHKSKDKDISPRTVKLTDQGREYQLMGLCRV 405 >gi|341822665|emb|CCC73589.1| CRISPR-associated RAMP protein [Megasphaera elsdenii DSM 20460] Length=393 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 98/401 (25%), Positives = 162/401 (41%), Gaps = 68/401 (16%) Query 6 KPFELTLRCLGPVFIGSGEKRTSKEYHVEGDR----VYFPD----MELLYADIPAHKRKS 57 K +ELT C+ P+ +G+GE EY DR VYF D M L I H Sbjct 10 KTYELT--CISPIHVGNGEVLKQYEYIFTKDRNQQRVYFLDKAKWMNFL---IRHHLIDD 64 Query 58 FEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKK 117 + + V + L+ W++ + R + + R + R Sbjct 65 YASQVFS-----GKMNLRGWLQAQRLGSLSTIIREICISSADVYLVRDVKQR-------- 111 Query 118 LTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHK------------RTAQPVRVP 165 LN+IH +K P G PY+PGST+KG +RS L + + + A R Sbjct 112 --LNDIHRQVKTPDGTPYIPGSTLKGAIRSAILFHDIRQHPDDYRLFWSRIKAAMKARER 169 Query 166 GHQTREHRQYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPAL-RTSDLLICQKM 224 ++ + ERK + + +P DA+ + + + V+D+ + D +I QK Sbjct 170 DRYDKQMGHLVQAIERKAFARLKQYKNQPDDALQSVMKGLSVSDAMLVGHERDTVILQKY 229 Query 225 DMNVHGKP--DG--LPLFRECLAPGTSISHRVVVDTSPTARGG-------WREGERFLET 273 D++ + DG L LFREC+ G + +D R G W+ +L Sbjct 230 DVSAVCREGLDGHSLALFRECIPAGRKFRFSMTLDRDIAKRIGITTLDDIWQWVRDYLAF 289 Query 274 -LAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTF---VTDQDDMAKVLD 329 LA+ A EY+ + + LGGG G+ +KT + +++ VL Sbjct 290 GLAQEKAVFGH----EYKGKFEESKL---ADIRLGGGTGFLTKTVYYALAPKEEGRTVLA 342 Query 330 AQFGKVV-----KHVDKTRELRVSPLVLKRTKIDNICYEMG 365 F KV+ H T++ +++P LK + + C +G Sbjct 343 EFFDKVLFTRRSCHHHMTKDDKLTPRTLKLAWVHDDCQILG 383 >gi|296133517|ref|YP_003640764.1| CRISPR-associated RAMP protein, Csm5 family [Thermincola sp. JR] gi|296032095|gb|ADG82863.1| CRISPR-associated RAMP protein, Csm5 family [Thermincola potens JR] Length=429 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 119/445 (27%), Positives = 179/445 (41%), Gaps = 105/445 (23%) Query 5 LKPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEAFVMN 64 +K + + L+ L P+FIG GE L YA +P K+ V Sbjct 6 MKTYRVKLKVLTPLFIGGGESTVISR--------------LDYAYVPNEKK------VYV 45 Query 65 TDGAQATAPLKE---------WVEPNAVKLDPAKHRGYE--------------------V 95 DG Q L E ++ A + P K G E + Sbjct 46 LDGRQWIGWLAEKGLLDLYQQYIRQQAEQSSPHKKAGREKGKKENGVNNFAWLQEKEHLL 105 Query 96 KIGSIEP-RRASRGRGGRMTRKK----LTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYL 150 K + E R+ SR + +K N+IH FI++ G PY+PGS++KG LR+ L Sbjct 106 KFRAAEVFRQVSRAAYSTVDAEKNGQRFNTNDIHGFIRNAEGLPYIPGSSIKGALRTAVL 165 Query 151 QSLVH---KRTAQPVRVPG------------HQTREHRQYGERFERKE----LRKSGRPN 191 +L+ T Q R G +RE++Q + + E L + Sbjct 166 AALLQGDAAGTGQYCRKLGEILQSRNKDRYNQGSRENKQKDAKHKVNELYSILERDYLDY 225 Query 192 TRPQDAVNDLFQ---AIRVTDSPALRTSDLLICQKMDMN-VHGK----PDGLPLFRECLA 243 TR + LF+ I V+DS +L++ +K D + V GK + LPL+REC Sbjct 226 TRQINGETHLFRGMAGISVSDSTPFPPENLMLVRKCDFSLVDGKLKKSAEKLPLYRECAR 285 Query 244 PGTSISHRVVVDTSPTARG-GWREGERFLETLAETAASVNQAR-----YAEYRAMYP-GV 296 PGT + + +D G R +E L + +V + A+ + P G Sbjct 286 PGTEVEFTLTIDEFKIKNAYGIRSFADIVEVLQKQYDAVFGEKGVIGVEAQSKKYLPAGA 345 Query 297 NAIVGPIVYLGGGAGYRSKTFVTD-------QDDMAK-VLDAQFGKVVKHVDKTRELRVS 348 I+ LGGG GY SKT V+ +D+A+ +L ++ K KH +K R L S Sbjct 346 LQDSRGIMLLGGGVGYHSKTVVSSLADSPRQANDLAREILKFRYSK-HKH-EKDRPL--S 401 Query 349 PLVLKRT---KIDNICYEMGQCELS 370 P LK + D + MG C LS Sbjct 402 PRALKLAVAGRGDKVF--MGLCRLS 424 >gi|303231949|ref|ZP_07318657.1| CRISPR-associated RAMP protein, Csm5 family [Veillonella atypica ACS-049-V-Sch6] gi|302513378|gb|EFL55412.1| CRISPR-associated RAMP protein, Csm5 family [Veillonella atypica ACS-049-V-Sch6] Length=391 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/417 (24%), Positives = 169/417 (41%), Gaps = 76/417 (18%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGD--RVYFPDMELLYADIPAH-KRKS 57 M+ + +L+L + P IG E T+K+Y D VY + + + H K Sbjct 1 MSNRIDHVQLSLTIVSPTNIGGSETLTTKDYMYNYDAGEVYLLNNYEWFRFLARHNKLAE 60 Query 58 FEAFVMNTDGAQATAPLKEWVEPNAVKL-DPAKHRGYEVKIGSIEPRRASRGRG-GRMTR 115 FE ++ N E V PN + D AK+ IGS + + G G + + Sbjct 61 FEIYMQN-----------EMVRPNGRTMYDWAKN-----TIGSSQLTKDVLGPAIGSIIK 104 Query 116 -------KKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQ 168 +K +LN+I I+ G Y+PGS++KG++ S + ++ A V Sbjct 105 SSIYNEGRKNSLNDITPQIRGANGEVYIPGSSIKGVIDSAIISHMLRNNKAFRSNVQ--- 161 Query 169 TREHRQYGERFERKE-----------------------LRKSGRPNTRPQDAVNDLFQAI 205 RE R+ + ++RK G+P + + F+ I Sbjct 162 -RELRKVLDVYKRKNAGSLFKDIFKMVNQAIIKHIHVLTNNDGKP---LKGILASAFRGI 217 Query 206 RVTDSPALRTSDLLICQKMDMNVHGKPDG---LPLFRECLAPGTSISHRVVVDTSPTARG 262 V+D+ + + +K D V DG + + REC+ P + +DT+ T Sbjct 218 SVSDAMPMSAIQTEVLKKEDSCV--DEDGTHEISVHRECILPNQKFFFTLTLDTAITKEI 275 Query 263 GWREGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPI-VYLGGGAGYRSKTFV--- 318 G ++ LE L E + ++ ++++ + P + + P Y+G G+ KT + Sbjct 276 GITSVDQVLEILQEDFDATHELLSSKFKKVSPAIFKALEPANAYIGSNTGFVQKTIIMAA 335 Query 319 ------TDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 T D + +LD +F K KH +K + +P +K K + YEMG + Sbjct 336 FTDNEETGIDIIRAILDVKFHK-AKHANKDHFM--APRAIKLVKWNGHYYEMGGIHI 389 >gi|339893267|emb|CCB52454.1| CRISPR associated RAMP family protein [Staphylococcus lugdunensis N920143] Length=336 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 91/405 (23%), Positives = 171/405 (43%), Gaps = 105/405 (25%) Query 5 LKPFELTLRCLGPVFIGSGE--KRTSKEYHVEGDRVYFPDMELLYADIPAHKRKS----F 58 +K F+ ++ +GP+ IGSG+ K+ Y +V+ + L + KRK+ + Sbjct 3 IKTFDAIIQTIGPIHIGSGQVLKKQDYIYDFHKSKVHMINGNQL---VKVLKRKNLLNMY 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVK-------LDPAKHRGYEVKIGSIEPRRASRGRGG 111 + F+ LK ++E + + + ++ K G+I+P+ Sbjct 60 QEFLRYPPKNPRENGLKNFLEAHKITQSEWKEFISYSESVNQGKKYGNIKPK-------- 111 Query 112 RMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTRE 171 LN++H I+D + Y+PGS++KG +++ +LV K Sbjct 112 -------PLNDLHLMIRDGQNKVYIPGSSIKGAIKT----ALVSKY-------------- 146 Query 172 HRQYGERFERKELRKSGRPNTRPQDAVND--LFQAIRVTDSPALRTSDLLICQKMDMNVH 229 D ND +F I+++DS + S+L I QK+D+N Sbjct 147 ------------------------DNENDKSVFSRIKISDSEPVDESNLAIYQKIDINKD 182 Query 230 GKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEY 289 KP +PL+REC+ T I ++ ++ + + + E ++ + + +R+ Sbjct 183 EKP--MPLYRECIDVNTQIKFKITIEDNQYS---IEDIENCIQDFYKNYYNQWLSRFKNT 237 Query 290 RA-----MYPGVNAIVGP-IVYLGGGAGYRSKT--FVTDQDDMAK-----VLDAQF---- 332 R + G+ + G I+YLGGG G+ SKT + T + AK +L +F Sbjct 238 RGGQKFILEGGMPEVKGQNILYLGGGVGFSSKTTHYQTKSHEQAKHDTFEILRKRFRGTY 297 Query 333 GKVVKHVDKTRELRVSPLVLKRT--KIDNICYEMGQCELSIRRAE 375 GK+ R + P+ LK T N Y+ G C+++ ++ + Sbjct 298 GKM------KRIPQNVPVALKGTLNYSKNQSYQQGMCQITFKKND 336 >gi|333976281|gb|EGL77150.1| CRISPR-associated RAMP protein, Csm5 family [Veillonella parvula ACS-068-V-Sch12] Length=391 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 95/416 (23%), Positives = 170/416 (41%), Gaps = 74/416 (17%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGD--RVYF-PDMELLYADIPAHKRKS 57 M+ + +L+L + P IG E T+K+Y D VY + E +K Sbjct 1 MSNRIDHAQLSLTIVSPTNIGGPETLTTKDYMYNYDAGEVYLLNNYEWFRFLAQLNKLAE 60 Query 58 FEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRG-GRMTR- 115 FE ++ N E V PN + + + IG+ + +A GR G + + Sbjct 61 FEEYMQN-----------EMVRPNGRTM----YGWAKNTIGTSQLTKAKLGRAIGSIMKS 105 Query 116 ------KKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQT 169 +K +LN+I I+ G Y+PGS++KG++ S + ++ A V Sbjct 106 SIYNKGRKNSLNDITPQIRGANGDVYIPGSSIKGVIDSAIISHMLRNNKAFRSNVQ---- 161 Query 170 REHRQYGERFERKELR-----------------------KSGRPNTRPQDAVNDLFQAIR 206 RE R+ + ++RK R G+P + + F+ I Sbjct 162 RELRKVLDVYKRKNARSLFKDIFKMVNLAILKHIHVLTNNEGKP---FKGILASAFRGIS 218 Query 207 VTDSPALRTSDLLICQKMDMNVHGKPDG---LPLFRECLAPGTSISHRVVVDTSPTARGG 263 V+D+ + + +K D V + DG + + REC+ P S + +DT+ T G Sbjct 219 VSDAMPMSVIQTEVLKKEDSCV--EEDGTHDISVHRECILPNQQFSFTLTLDTAMTKEIG 276 Query 264 WREGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPI-VYLGGGAGYRSKTFV---- 318 ++ L+ L E + ++ ++++ + P + + P Y+G G+ KT + Sbjct 277 ITSIDQVLDILQEDFDATHKLLASKFKKVSPSIFKALEPANAYIGSNTGFIQKTIIMAAF 336 Query 319 -----TDQDDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 T D + +LD F K KH K + + +P +K K + YEMG + Sbjct 337 TDDEKTGIDIIRAILDVNFQK-AKHDSKDKFM--APRAIKLVKWNGNYYEMGGIHI 389 >gi|341656686|gb|EGS80395.1| CRISPR-associated RAMP protein, Csm5 family [Staphylococcus epidermidis VCU037] Length=340 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/384 (23%), Positives = 164/384 (43%), Gaps = 69/384 (17%) Query 5 LKPFELTLRCLGPVFIGSGE--KRTSKEYHVEGDRVYFPDMELLYADIPAHKRK----SF 58 +K +E+ ++ LGPV IGSG+ K+ Y +VY + L + KRK ++ Sbjct 3 IKNYEVVVKTLGPVHIGSGQVMKKQDYIYDFYNSKVYMINGNKL---VKFLKRKNLLHTY 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 + F+ LK++++ VK +E + E + ++G+ R K Sbjct 60 QNFLRYPPKNPRENGLKDYLDAQNVK-----QSEWEAFVSYSE--KVNQGKKYGNVRPK- 111 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 LN++H ++D + Y+PGS++KG +++ +LV K + + Sbjct 112 PLNDLHLMVRDGQNKVYLPGSSIKGAIKT----TLVSKYNNEKNK--------------- 152 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLF 238 D++ I+V+DS + S+L I QK+D+N KP +PL+ Sbjct 153 ---------------------DIYSKIKVSDSKPIDESNLAIYQKIDINKSEKP--MPLY 189 Query 239 RECLAPGTSISHRVVVDTSPTARGGWREGER--FLETLAETAASVNQARYAEYRAMYPGV 296 REC+ T I ++ ++ + + R + + + + A+ G+ Sbjct 190 RECVDVNTEIKFKLTIEDEIYSINEIEQSIRDFYKNYYDKWLVGFKETKGGRRFALEGGI 249 Query 297 NAIVGP-IVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHV----DKTRELRVS-PL 350 ++ I++LG G G+ SKT + + F + K K +E+ + P+ Sbjct 250 PDVLNQNILFLGAGTGFVSKTTHYQLKNRKQAKQDSFEILTKKFRGTYGKMKEIPSNVPV 309 Query 351 VLKRT--KIDNICYEMGQCELSIR 372 LK T + + Y+ G C++S + Sbjct 310 ALKGTTNQSRHTSYQQGMCKVSFQ 333 >gi|269798857|ref|YP_003312757.1| CRISPR-associated RAMP protein, Csm5 family [Veillonella parvula DSM 2008] gi|269095486|gb|ACZ25477.1| CRISPR-associated RAMP protein, Csm5 family [Veillonella parvula DSM 2008] Length=391 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 93/408 (23%), Positives = 169/408 (42%), Gaps = 58/408 (14%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGD--RVYFPDMELLYADIPAH-KRKS 57 M+ + +L+L + P IG E T+K+Y D VY + + + H K + Sbjct 1 MSNRIDHAQLSLTIVSPTNIGGPENLTTKDYMYNYDAGEVYLLNNYEWFRFLAHHNKLEE 60 Query 58 FEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKK 117 FE ++ + + +W + NA+ IGSI ++S GR K Sbjct 61 FELYMQDEMIRPNGRTMYDWAK-NAIGASQLTKDTLRSAIGSI--MKSSIYNKGR----K 113 Query 118 LTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGE 177 +LN+I I+ G Y+PGS++KG++ S + ++ A V RE R+ + Sbjct 114 NSLNDITPQIRGANGDVYIPGSSIKGVIDSAIISHMLRNNKAFRSNVQ----RELRKVLD 169 Query 178 RFERKELR-----------------------KSGRPNTRPQDAVNDLFQAIRVTDSPALR 214 ++RK R G+P + + F+ I ++D+ + Sbjct 170 VYKRKNARSLFKDIFKMVNLAILKHIHVLTNNEGKP---FKGILASAFRGISISDAMPMG 226 Query 215 TSDLLICQKMDMNVHGKPDG---LPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFL 271 + +K D V + DG + + REC+ P S + +DT+ T G ++ L Sbjct 227 VIKTEVLKKEDSCV--EEDGTHDISVHRECILPNQQFSFTLTLDTAMTKEIGITSIDQVL 284 Query 272 ETLAETAASVNQARYAEYRAMYPGV-NAIVGPIVYLGGGAGYRSKTFV---------TDQ 321 + L E + ++ ++++ + P V A+ Y+G G+ KT + T Sbjct 285 DILQEDFDATHKLLASKFKKVSPSVFKALDSANAYIGSNTGFIQKTIIMAAFTDDEKTGI 344 Query 322 DDMAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 D + +LD F K KH K + + +P +K K + YE+G + Sbjct 345 DIIRAILDVNFQK-AKHDSKDKFM--APRAIKLVKWNGNYYEVGGIHI 389 >gi|342213932|ref|ZP_08706645.1| CRISPR type III-A/MTUBE-associated RAMP protein Csm5 [Veillonella sp. oral taxon 780 str. F0422] gi|341596430|gb|EGS39032.1| CRISPR type III-A/MTUBE-associated RAMP protein Csm5 [Veillonella sp. oral taxon 780 str. F0422] Length=389 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 92/396 (24%), Positives = 157/396 (40%), Gaps = 55/396 (13%) Query 7 PFELTLRCLGPVFIGSGEKRTSKEYHVE--GDRVYFPD----MELLYADIPAHKRKSFEA 60 PF TL + PV IGSG+ +Y ++ VY + + LY+ +K +E Sbjct 11 PF--TLEVITPVSIGSGQGLKVLDYILDTANHDVYILNQKKWFQYLYS---INKLSEYEL 65 Query 61 FVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTL 120 F+ + EW+E N LD E + SI R R + K TL Sbjct 66 FIKKYATGNTKDTIFEWMERNIGILD-------ESILKSISTRHV---RCVKSAISKRTL 115 Query 121 NEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFE 180 N+I + G PY+PGS++KG++ + + ++ ++ Q R + H R Sbjct 116 NDIKLCMSLSDGSPYIPGSSLKGVIIASVIAYIIEQK--QSFRNEWSRRFLHTMNDTREL 173 Query 181 RKELRKSGRP-------------NTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMN 227 +K +R G T +D+ LF I V+D + + I + D + Sbjct 174 QKCIRDYGNALDKLISSYIADNTGTIEKDSTKKLFHGISVSDVMPVSKLNTFILPRYD-S 232 Query 228 VHGKPD--GLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQAR 285 V GK + LPL+REC+ P T + + D + G + ++ + Q Sbjct 233 VVGKYERKSLPLYRECIVPNTKLKGTLSADIRELQKVGVQSMSELIQIIERHT----QRI 288 Query 286 YAEYRAMYPG------VNAIVGPIVYLGGGAGYRSKTFVT----DQDDMAKVLDA--QFG 333 + ++ ++ G + + LG G+ KT + DQ D V+ + Sbjct 289 VSRWKQVFTGDVERTCLADLENTTCLLGSSIGFLHKTLLLPLFDDQRDEVDVIKSVLNLQ 348 Query 334 KVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 + K + ++ +SP LK TK Y G +L Sbjct 349 RAFKKHNHWKDRSISPRTLKLTKYRGKDYIFGGVKL 384 >gi|57865880|ref|YP_190000.1| CRISPR-associated Csm5 family protein [Staphylococcus epidermidis RP62A] gi|57636538|gb|AAW53326.1| CRISPR-associated protein, TM1807 family [Staphylococcus epidermidis RP62A] Length=340 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 86/387 (23%), Positives = 167/387 (44%), Gaps = 75/387 (19%) Query 5 LKPFELTLRCLGPVFIGSGE--KRTSKEYHVEGDRVYFPDMELLYADIPAHKRK----SF 58 +K +E+ ++ LGP+ IGSG+ K+ Y +VY + L + KRK ++ Sbjct 3 IKNYEVVIKTLGPIHIGSGQVMKKQDYIYDFYNSKVYMINGNKL---VKFLKRKNLLYTY 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKL 118 + F+ LK++++ VK +E + E + ++G+ TR K Sbjct 60 QNFLRYPPKNPRENGLKDYLDAQNVK-----QSEWEAFVSYSE--KVNQGKKYGNTRPK- 111 Query 119 TLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGER 178 LN++H ++D + Y+PGS++KG +++ +LV K + + Sbjct 112 PLNDLHLMVRDGQNKVYLPGSSIKGAIKT----TLVSKYNNEKNK--------------- 152 Query 179 FERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLF 238 D++ I+V+DS + S+L I QK+D+N K +PL+ Sbjct 153 ---------------------DIYSKIKVSDSKPIDESNLAIYQKIDINKSEK--SMPLY 189 Query 239 RECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYR-----AMY 293 REC+ T I ++ ++ + E E+ ++ + + E + A+ Sbjct 190 RECIDVNTEIKFKLTIEDEIYS---INEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALE 246 Query 294 PGVNAIVGP-IVYLGGGAGYRSKTFVTDQDDMAKVLDAQFGKVVKHV----DKTRELRVS 348 G+ ++ I++LG G G+ SKT + + F + K K +E+ + Sbjct 247 GGIPDVLNQNILFLGAGTGFVSKTTHYQLKNRKQAKQDSFEILTKKFRGTYGKMKEIPSN 306 Query 349 -PLVLKRT--KIDNICYEMGQCELSIR 372 P+ LK T + + Y+ G C++S + Sbjct 307 VPVALKGTTNQSRHTSYQQGMCKVSFQ 333 >gi|289549403|ref|YP_003470307.1| CRISPR-associated protein, Csm5 family [Staphylococcus lugdunensis HKU09-01] gi|289178935|gb|ADC86180.1| CRISPR-associated protein, Csm5 family [Staphylococcus lugdunensis HKU09-01] Length=336 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/399 (22%), Positives = 165/399 (42%), Gaps = 93/399 (23%) Query 5 LKPFELTLRCLGPVFIGSGE--KRTSKEYHVEGDRVYFPDMELLYADIPAHKRKS----F 58 +K F+ ++ +GP+ IGSG+ K+ Y +V+ + L + KRK+ + Sbjct 3 IKTFDAIIQTIGPIHIGSGQVLKKQDYIYDFHKSKVHMINGNQL---VKVLKRKNLLNMY 59 Query 59 EAFVMNTDGAQATAPLKEWVEPNAVK-------LDPAKHRGYEVKIGSIEPRRASRGRGG 111 + F+ LK ++E + + + ++ K G+I+P+ Sbjct 60 QEFLRYPPKNPRENGLKNFLEAHKITQSEWKEFISYSESVNQGKKYGNIKPK-------- 111 Query 112 RMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTRE 171 LN++H I+D + Y+PGS++KG +++ +LV K Sbjct 112 -------PLNDLHLMIRDGQNKVYIPGSSIKGAIKT----ALVSKY-------------- 146 Query 172 HRQYGERFERKELRKSGRPNTRPQDAVND--LFQAIRVTDSPALRTSDLLICQKMDMNVH 229 D ND +F I+++DS + S+L I QK+D+N Sbjct 147 ------------------------DNENDKSVFSRIKISDSEPVDESNLAIYQKIDINKD 182 Query 230 GKPDGLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEY 289 KP +PL+REC+ T I ++ ++ + + + E ++ + + +R+ Sbjct 183 EKP--MPLYRECIDVNTQIKFKITIEDNQYS---IEDIENCIQDFYKNYYNQWLSRFKNT 237 Query 290 RA-----MYPGVNAIVGP-IVYLGGGAGYRSKT--FVTDQDDMAK-----VLDAQFGKVV 336 R + G+ + G I+YLGGG G+ SKT + T + AK +L +F Sbjct 238 RGGQKFILEGGMPEVKGQNILYLGGGVGFSSKTTHYQTKSHEQAKHDTFEILRKRFRGTY 297 Query 337 KHVDKTRELRVSPLVLKRTKIDNICYEMGQCELSIRRAE 375 + + + L N Y+ G C+++ ++ + Sbjct 298 GKMKRIPQNVSVALKGTLNYSKNQSYQQGMCQITFKKND 336 >gi|301299525|ref|ZP_07205794.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852872|gb|EFK80487.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length=179 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/220 (28%), Positives = 99/220 (45%), Gaps = 50/220 (22%) Query 6 KPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKS---FEAFV 62 + +E L L PV IGSG K TSKE E YFP+M+ LY + + +S FE ++ Sbjct 6 QDYEFVLYTLAPVHIGSGVKVTSKESIQENGEYYFPEMDKLYLFLEKNHPESLPAFEQYL 65 Query 63 MNTDGAQATAPLKEWVE-PNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLN 121 +++ G++ ++ N K+ G+++K ++ R LN Sbjct 66 LDS-GSKTNKSKSRLIDFLNDQKIKERDFGGFKIKQNNLVER----------------LN 108 Query 122 EIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFER 181 E+ F +D LGR Y+PGS++KG +R+I L+S + G Q + G++F+ Sbjct 109 EVSLFARDGLGRRYIPGSSLKGAIRTI-LESEYFR---------GKQISWGAKSGQQFD- 157 Query 182 KELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLIC 221 D+F IRV DS + S+ I Sbjct 158 ------------------DIFNNIRVGDSNTIGESNFSIV 179 >gi|292669138|ref|ZP_06602564.1| Csm5 family CRISPR-associated RAMP protein [Selenomonas noxia ATCC 43541] gi|292649190|gb|EFF67162.1| Csm5 family CRISPR-associated RAMP protein [Selenomonas noxia ATCC 43541] Length=410 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 99/415 (24%), Positives = 165/415 (40%), Gaps = 80/415 (19%) Query 12 LRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYAD---IPAHKRKSFEAFV--MNTD 66 ++C+ PV IGSGE+ + EY + D++ +M LL+ R +AF+ + + Sbjct 12 IKCIAPVHIGSGEELRTFEYLYDRDKL---EMSLLHESKWLAFLDARGLTDAFIKYIEIE 68 Query 67 G-AQATAPLKEWVEPNAVKLDPAKHRGY---EVKIGSIEPRRASRGRGGRMTRKKLTLNE 122 G + L EW+ N V + G V + + ++ +K LN+ Sbjct 69 GQGNRSRNLLEWLTANRVTEADLRKAGVIRRRVPVAMLSEKK--------YRNRKPNLNK 120 Query 123 IHA-FIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTA-------QPVRVPGHQTREHRQ 174 + ++ PY+PGST+KG LR+ L L+ K A + V G + + Sbjct 121 VVCHLVRADNAHPYIPGSTIKGALRTGILYHLIRKDPARFRAYWQEISSVKGSLKEKEHK 180 Query 175 YGE---RFERKELRKSGRPNTRPQDAVNDLFQAIRVTDS---PALRTSDLLICQKMDMNV 228 + E R E++ L +T DA + + V+D+ + + +I QK+D Sbjct 181 WNEIILRLEQELLHTLTYEDTERGDAAASALRGLSVSDAMLVGCVAKAPTVIVQKIDATT 240 Query 229 HGKP------DGLPLFRECLAPGTS-----------ISHRVVVDTSPTARG--------G 263 KP + LFREC+ P S + H +D+ P+ G Sbjct 241 LIKPGEKRGESPIVLFRECI-PADSRLRFTITANLPMLHAAGIDSLPSVLNMLRAYTLDG 299 Query 264 WREGERFLETLAETAASVNQARYAEYRAMYPGVNAIVGPIVYLGGGAGYRSKTFVTDQDD 323 +R E + A +Y+A NA+ LGGG G+ SKT D Sbjct 300 LTRQQRVFEAIDAKYYGDLFADIGKYKA-----NAL------LGGGTGFLSKTLTYALAD 348 Query 324 --------MAKVLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCELS 370 A D QF H + + +++P LKR + D + MG C ++ Sbjct 349 KETDARRFAAAYFDEQFTN-PSHKHRETDTQLTPRTLKRAQTDGADWLMGLCSIT 402 >gi|258645683|ref|ZP_05733152.1| CRISPR-associated RAMP protein, Csm5 family [Dialister invisus DSM 15470] gi|260403051|gb|EEW96598.1| CRISPR-associated RAMP protein, Csm5 family [Dialister invisus DSM 15470] Length=388 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/288 (24%), Positives = 122/288 (43%), Gaps = 60/288 (20%) Query 5 LKPFELTLRCLGPVFIGSGEKRTSKEYHVEGD----RVYFPDMELLYADIPAHKRKSFEA 60 +K +++ L C PV IGSG+ +Y E + +YF + E +A+ K K ++ Sbjct 2 MKYWKMKLTCQSPVHIGSGDIYQKNQYVYEDNGKKAHIYFLN-ESKWAEF-LEKEKLLDS 59 Query 61 FV---------------MNTDGAQATAP------LKEWVEPNAVKLDPAKHRGYEVKIGS 99 FV +NT P +++ V+ + Y S Sbjct 60 FVSEIHRKFKHFSIYDFLNTCKRNDRQPESLKRLIRDLVDSGVLSKPETADVPY-----S 114 Query 100 IEPRRASRGRGGRMTRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLV----- 154 PR A LN++H FIKD GR Y+PGS++KG R+ + +++ Sbjct 115 KNPRNA--------------LNDVHTFIKDSKGRMYIPGSSLKGAFRTAIIAAMIRKDRE 160 Query 155 --HKRTAQPVRVPGHQTREHRQYG---ERFERKELRKSGRPNTRPQDAVNDLFQAIRVTD 209 K + + +R G ++ E++ G R + VN F+A+ V D Sbjct 161 RYEKYWNEIFNIAKRANYLNRNIGNVLDKLEKEIFIPIGTDGKR--NMVNSCFRALTVGD 218 Query 210 SPALRTSDLLICQKMDM-NVHGKPDGLPLFRECLAPGTSISHRVVVDT 256 S + +++ QK D P + L+REC+APG +++ ++ +D+ Sbjct 219 SSTASKAGIIV-QKADFGEKEDNPHTISLWRECMAPGDTVNFKLGIDS 265 >gi|238018270|ref|ZP_04598696.1| hypothetical protein VEIDISOL_00094 [Veillonella dispar ATCC 17748] gi|237864741|gb|EEP66031.1| hypothetical protein VEIDISOL_00094 [Veillonella dispar ATCC 17748] Length=391 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 94/403 (24%), Positives = 166/403 (42%), Gaps = 48/403 (11%) Query 1 MNTYLKPFELTLRCLGPVFIGSGEKRTSKEYHVEGD--RVYFPDMELLYADIPAH-KRKS 57 M+ + +L L + P IG EK T+K+Y D VY + + + H K Sbjct 1 MSNRIDHAQLLLTVVSPTNIGGPEKLTTKDYMYNYDAGEVYLLNNYEWFRFLARHNKLAE 60 Query 58 FEAFVMNTDGAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKK 117 FE ++ + + +W + N V IGSI ++S GR K Sbjct 61 FELYMQDEMVRPNGRTMYDWAK-NTVGAAQLTKDALGPVIGSI--MKSSIYNKGR----K 113 Query 118 LTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGE 177 +LN+I I+ G Y+PGS++KG++ S + ++ A V RE ++ + Sbjct 114 NSLNDITPQIRGANGDVYIPGSSIKGVIDSAIISHMLRNNKAFRSTVQ----RELKKVLD 169 Query 178 RFERKELRKSGRPNTRPQDAV---------NDL---FQAIRVTDSPALRTSDLLICQKMD 225 ++RK R + + + V N+ F+AI + L SD + + Sbjct 170 VYKRKNARNLFKDIFKMVNLVILKHIHVLTNNEGKPFKAILASAFRGLSVSDAMPMGAIQ 229 Query 226 MNVHGKPD---------GLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAE 276 V K D + + REC+ P S V +DT+ T G + L+ L E Sbjct 230 TEVLKKEDSCIDEDGTHAISVHRECILPNQKFSFTVTLDTAMTKEIGITSINQVLDILQE 289 Query 277 TAASVNQARYAEYRAMYPGV-NAIVGPIVYLGGGAGYRSKT-----FVTDQ----DDMAK 326 + ++ ++++ + P + A+ Y+G G+ KT F+ D+ D + Sbjct 290 DFDATHKLLASKFKKVSPSIFKALELANAYIGSNTGFVQKTIIMAAFIDDEKTGIDIIKA 349 Query 327 VLDAQFGKVVKHVDKTRELRVSPLVLKRTKIDNICYEMGQCEL 369 +LD F K +H ++ ++P +K K + YEMG + Sbjct 350 ILDVNFQK-AEH--DRKDTIMAPRAIKLVKWNGNYYEMGGIHI 389 >gi|315641549|ref|ZP_07896618.1| csm5 family CRISPR-associated ramp protein [Enterococcus italicus DSM 15952] gi|315482686|gb|EFU73213.1| csm5 family CRISPR-associated ramp protein [Enterococcus italicus DSM 15952] Length=349 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 95/409 (24%), Positives = 163/409 (40%), Gaps = 110/409 (26%) Query 6 KPFELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLY-ADIP-----AHKRKSFE 59 K +++ L+ GPV IGSG+ +EY +Y L + D P +K+ F Sbjct 4 KVYQVKLKVYGPVHIGSGKIIRKQEY------IYDRRKSLAHIVDGPNLVKFLNKKGKFT 57 Query 60 AFVMNTDGAQATAPLKEWVEPNAVKLDPAK------HRGYEVKIGSIEPRRASRGRGGRM 113 A++ + + A L ++ + + K R + KI + SR R Sbjct 58 AYLQYLNTTKERADLYTFLRQEQIDTNDWKTFVLYTERVNQGKIDMKDHNPYSRTSTNRR 117 Query 114 TRKKLTLNEIHAFIKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHR 173 K +N++H F++D G Y+PGS++KG LR++ L+ +Q+ E Sbjct 118 QVDK-GMNDLHLFVRDGRGDLYIPGSSLKGALRTV-LEG-------------ANQSAE-- 160 Query 174 QYGERFERKELRKSGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPD 233 F ++ ++DS + +L I QK+D+N KP Sbjct 161 ---------------------------AFHSLSISDSLPIDPKNLAIYQKIDINKELKP- 192 Query 234 GLPLFRECLAPGTSISHRVVVDTSPTARGGWREGERFLETLAETAASVNQARYAEYRAMY 293 +PL+REC+ GT++ + +++ W T+ + + QA Y +Y + Sbjct 193 -MPLYRECVNVGTTVEFTMKINSD-----DW--------TIEKIEKQIQQA-YLQYWNKW 237 Query 294 -------PGVNAIVG--------------PIVYLGGGAGYRSKTF-------VTDQDDMA 325 PG A + +++LGGG G+ SKT Q D+ Sbjct 238 FVGMVTTPGGKAFIKGGGLPSVLHAKHRPTVLFLGGGTGFPSKTTHYLQKPKEQAQKDIF 297 Query 326 KVLDAQFGKVVKHVDKTRELRVSPLVLKRTKID--NICYEMGQCELSIR 372 +L +F V + + P+VLK T D N Y+ G C L + Sbjct 298 AILQRRFRNVYGKMATVP--KNVPMVLKGTVNDSTNKWYQQGVCLLEFQ 344 >gi|15669863|ref|NP_248677.1| hypothetical protein MJ_1667 [Methanocaldococcus jannaschii DSM 2661] gi|41688762|sp|Q59061.1|Y1667_METJA RecName: Full=Uncharacterized protein MJ1667 gi|1500570|gb|AAB99692.1| hypothetical protein MJ_1667 [Methanocaldococcus jannaschii DSM 2661] Length=418 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/336 (22%), Positives = 138/336 (42%), Gaps = 63/336 (18%) Query 9 ELTLRCLGPVFIGSGEKRTSKEYHVEGDRVYFPDMELLYADIPAHKRKSFEA--FVMNTD 66 E+ + P+FIG GE+ + +Y +E + D+E +D+ ++ + + V N D Sbjct 47 EVKCELITPIFIGCGEEYSQLDYFIEDGLAHIIDLEKAVSDLDDLEKVDYISGLIVSNID 106 Query 67 GAQATAPLKEWVEPNAVKLDPAKHRGYEVKIGSIEPRRASRGRGGRMTRKKLTLNEIHAF 126 + K+ +E +V L+P Y+ I IE S + TR K +N+ + + Sbjct 107 NNRLNLTAKDILE--SVGLNP-----YDYVIRKIESEIFSNKK----TRVKKFINQNNTY 155 Query 127 IKDPLGRPYVPGSTVKGMLRSIYLQSLVHKRTAQPVRVPGHQTREHRQYGERFERKELRK 186 Y+PGS++KG +R+ Y+ + K + +++ + + G+ E+ Sbjct 156 --------YIPGSSIKGAIRTAYIFNYYDKNLPELLKILDDRNIKLHDKGKELEK----- 202 Query 187 SGRPNTRPQDAVNDLFQAIRVTDSPALRTSDLLICQKMDMNVHGKPDGLPLFRECLAPGT 246 N +D D F+ ++++DS L I K N K +P+ E + GT Sbjct 203 ----NAISKDIPKDFFKYLKISDSLNLEGEFKFIHTKR-WNYRKKKFDVPINMEGMTKGT 257 Query 247 -------------SISHRVVVDTSPTARGGWREGER-----------FLETLAETAASVN 282 +I+ R+ + +P ++ E+ F +T+ E N Sbjct 258 FSINIKIEDEFFKNINKRLKTNYNP------KDDEKKFDILKNLCNNFSKTVVEFELKKN 311 Query 283 QARYAE--YRAMYPGVNAIVGPIVYLGGGAGYRSKT 316 Y E Y + +N + LG G G+ +KT Sbjct 312 NPVYVEKSYEKLLADINKDDAIYLNLGFGGGFLNKT 347 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 718963958700 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40