BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2821c
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609958|ref|NP_217337.1| hypothetical protein Rv2821c [Mycob... 477 7e-133
gi|289746620|ref|ZP_06505998.1| conserved hypothetical protein [... 475 2e-132
gi|340627817|ref|YP_004746269.1| hypothetical protein MCAN_28451... 437 7e-121
gi|224543484|ref|ZP_03684023.1| hypothetical protein CATMIT_0269... 223 2e-56
gi|322375484|ref|ZP_08049997.1| CRISPR-associated RAMP protein, ... 223 2e-56
gi|322387545|ref|ZP_08061154.1| csm3 family CRISPR-associated ra... 221 5e-56
gi|270292488|ref|ZP_06198699.1| CRISPR-associated RAMP protein, ... 216 2e-54
gi|312278323|gb|ADQ62980.1| CRISPR-associated protein, Csm3 fami... 215 3e-54
gi|55820997|ref|YP_139439.1| hypothetical protein stu0962 [Strep... 212 3e-53
gi|116627768|ref|YP_820387.1| hypothetical protein STER_0975 [St... 212 4e-53
gi|55822916|ref|YP_141357.1| hypothetical protein str0962 [Strep... 211 6e-53
gi|334308471|gb|EGL99457.1| CRISPR-associated RAMP Csm3 [Lactoba... 203 2e-50
gi|227890793|ref|ZP_04008598.1| CRISPR-associated Cmr4 family pr... 201 7e-50
gi|291460039|ref|ZP_06599429.1| CRISPR-associated RAMP protein, ... 201 8e-50
gi|327469966|gb|EGF15430.1| csm3 family CRISPR-associated ramp p... 197 1e-48
gi|325687528|gb|EGD29549.1| csm3 family CRISPR-associated ramp p... 196 2e-48
gi|125718069|ref|YP_001035202.1| hypothetical protein SSA_1249 [... 196 3e-48
gi|301299527|ref|ZP_07205796.1| CRISPR-associated RAMP protein, ... 195 5e-48
gi|315925059|ref|ZP_07921276.1| csm3 family CRISPR-associated ra... 194 1e-47
gi|253578038|ref|ZP_04855310.1| conserved hypothetical protein [... 191 6e-47
gi|345284420|gb|AEN78273.1| CRISPR-associated RAMP protein, Csm3... 189 3e-46
gi|229826460|ref|ZP_04452529.1| hypothetical protein GCWU000182_... 188 6e-46
gi|114567269|ref|YP_754423.1| hypothetical protein Swol_1754 [Sy... 184 8e-45
gi|291539922|emb|CBL13033.1| CRISPR-associated protein, Csm3 fam... 174 1e-41
gi|240143672|ref|ZP_04742273.1| CRISPR-associated RAMP protein, ... 172 3e-41
gi|225018977|ref|ZP_03708169.1| hypothetical protein CLOSTMETH_0... 171 1e-40
gi|295105103|emb|CBL02647.1| CRISPR-associated protein, Csm3 fam... 169 3e-40
gi|121533438|ref|ZP_01665266.1| CRISPR-associated RAMP protein, ... 166 2e-39
gi|292669140|ref|ZP_06602566.1| csm3 family CRISPR-associated ra... 166 4e-39
gi|237741576|ref|ZP_04572057.1| CRISPR-associated ramp protein [... 164 9e-39
gi|342215297|ref|ZP_08707946.1| CRISPR type III-A/MTUBE-associat... 164 1e-38
gi|340752431|ref|ZP_08689230.1| csm3 family CRISPR-associated ra... 162 5e-38
gi|294782691|ref|ZP_06748017.1| CRISPR-associated RAMP protein, ... 160 2e-37
gi|339890599|gb|EGQ79701.1| csm3 family CRISPR-associated ramp p... 160 2e-37
gi|238018268|ref|ZP_04598694.1| hypothetical protein VEIDISOL_00... 157 1e-36
gi|331004041|ref|ZP_08327523.1| csm3 family CRISPR-associated ra... 157 1e-36
gi|258645685|ref|ZP_05733154.1| CRISPR-associated RAMP protein, ... 156 3e-36
gi|323141261|ref|ZP_08076157.1| CRISPR-associated RAMP protein, ... 156 3e-36
gi|313894912|ref|ZP_07828472.1| CRISPR-associated RAMP protein, ... 155 4e-36
gi|296133519|ref|YP_003640766.1| CRISPR-associated RAMP protein,... 154 1e-35
gi|312899096|ref|ZP_07758474.1| CRISPR-associated RAMP protein, ... 154 1e-35
gi|269798859|ref|YP_003312759.1| CRISPR-associated RAMP protein,... 152 6e-35
gi|289549401|ref|YP_003470305.1| DNA repair protein, RAMP superf... 150 2e-34
gi|341822663|emb|CCC73587.1| CRISPR-associated RAMP protein [Meg... 149 3e-34
gi|333976345|gb|EGL77214.1| CRISPR-associated RAMP protein, Csm3... 148 7e-34
gi|57865882|ref|YP_190002.1| CRISPR-associated Cmr4 family prote... 147 1e-33
gi|329736393|gb|EGG72662.1| CRISPR-associated RAMP protein, Csm3... 146 3e-33
gi|20090782|ref|NP_616857.1| hypothetical protein MA1933 [Methan... 145 4e-33
gi|303231919|ref|ZP_07318627.1| CRISPR-associated RAMP protein, ... 142 3e-32
gi|334126729|ref|ZP_08500677.1| csm3 family CRISPR-associated ra... 142 5e-32
>gi|15609958|ref|NP_217337.1| hypothetical protein Rv2821c [Mycobacterium tuberculosis H37Rv]
gi|15842362|ref|NP_337399.1| hypothetical protein MT2888 [Mycobacterium tuberculosis CDC1551]
gi|31793997|ref|NP_856490.1| hypothetical protein Mb2845c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=236
Score = 477 bits (1227), Expect = 7e-133, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT
Sbjct 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
Query 61 LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL 120
LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL
Sbjct 61 LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL 120
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED
Sbjct 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV
Sbjct 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
>gi|289746620|ref|ZP_06505998.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289687148|gb|EFD54636.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=236
Score = 475 bits (1223), Expect = 2e-132, Method: Compositional matrix adjust.
Identities = 235/236 (99%), Positives = 236/236 (100%), Gaps = 0/236 (0%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT
Sbjct 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
Query 61 LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL 120
LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL
Sbjct 61 LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL 120
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED
Sbjct 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
FNAIARGLKLLELDYLGGSGTRGYGQ+KFSNLKARAAVGALDGSLLEKLNHELAAV
Sbjct 181 FNAIARGLKLLELDYLGGSGTRGYGQLKFSNLKARAAVGALDGSLLEKLNHELAAV 236
>gi|340627817|ref|YP_004746269.1| hypothetical protein MCAN_28451 [Mycobacterium canettii CIPT
140010059]
gi|340006007|emb|CCC45176.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=236
Score = 437 bits (1123), Expect = 7e-121, Method: Compositional matrix adjust.
Identities = 217/236 (92%), Positives = 224/236 (95%), Gaps = 0/236 (0%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
M T YAKIEITGT+TV+TGL IGAGDGFSAIGAVDKPVVRDPL++ PMIPGTSLKGKVRT
Sbjct 1 MITGYAKIEITGTITVVTGLHIGAGDGFSAIGAVDKPVVRDPLTKWPMIPGTSLKGKVRT 60
Query 61 LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTL 120
LLSRQYGADTETFYRKPN+D A IRRLFGDT+EY TGRLVFRDTKLTNKDDLEARGAKTL
Sbjct 61 LLSRQYGADTETFYRKPNDDPAQIRRLFGDTKEYKTGRLVFRDTKLTNKDDLEARGAKTL 120
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
TEVKFENAINRVTAKAN RQMERVIPGSEFAFSLVYEVSFGTP EEQKASLPSSDEIIED
Sbjct 121 TEVKFENAINRVTAKANPRQMERVIPGSEFAFSLVYEVSFGTPDEEQKASLPSSDEIIED 180
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
FNAIARGLKLLELDYLGGSGTRGYGQVKFS+LKARAAVG LD SLLE LNHELAAV
Sbjct 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSDLKARAAVGTLDRSLLEMLNHELAAV 236
>gi|224543484|ref|ZP_03684023.1| hypothetical protein CATMIT_02693 [Catenibacterium mitsuokai
DSM 15897]
gi|224523611|gb|EEF92716.1| hypothetical protein CATMIT_02693 [Catenibacterium mitsuokai
DSM 15897]
Length=221
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/234 (50%), Positives = 154/234 (66%), Gaps = 18/234 (7%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y KI+ITGT+ VLTG+ IG F+AIGAVD PV++D LS PMIPG+SLKGK+RTLL++
Sbjct 2 YTKIQITGTIEVLTGMHIGGSSAFAAIGAVDSPVIKDVLSGCPMIPGSSLKGKMRTLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
+Y E+ KP++D I+R+FG E+ R+ D L+N DL +G +LTE
Sbjct 62 EY---NESVADKPDQDCERIKRVFGSAEKNHIKKSRIQISDMILSNDKDLRKKGLNSLTE 118
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN INR TA AN RQ+ERV+ GSEF ++YEV + D++ ED
Sbjct 119 VKFENTINRATAVANPRQIERVVRGSEFDLDILYEVD-------------NMDDLYEDIE 165
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
IA LK+L+ DYLGGSG+RGYG+VKF++L A +G LD S+ +K+N L+ V
Sbjct 166 LIAEALKMLQFDYLGGSGSRGYGKVKFTDLYAETVIGQLDKSIEDKINDILSKV 219
>gi|322375484|ref|ZP_08049997.1| CRISPR-associated RAMP protein, Csm3 family [Streptococcus sp.
C300]
gi|321279747|gb|EFX56787.1| CRISPR-associated RAMP protein, Csm3 family [Streptococcus sp.
C300]
Length=220
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/228 (52%), Positives = 152/228 (67%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI++TG + + TGL IG + F+AIGA D PV++DP++ LP+IPG+S+KGK+RTLL+
Sbjct 2 AFAKIQVTGQIRLETGLHIGTSNAFAAIGATDSPVIKDPITNLPIIPGSSIKGKMRTLLA 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
R Y KP ED I RLFG++ + Y GRL+FRD LTNK DL++R K T
Sbjct 62 RVYNT---KLAEKPGEDGEIISRLFGNSSDKNYKVGRLIFRDAFLTNKKDLDSRAVKGYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S F F L+YEV + S ++ EDF
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRDSIFGFELIYEV-----------TDKSQAQVEEDF 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F NLKA G D S L +L
Sbjct 168 KVILDGLKLLELDYLGGSGSRGYGKVVFENLKANTVFGNYDVSRLNEL 215
>gi|322387545|ref|ZP_08061154.1| csm3 family CRISPR-associated ramp protein [Streptococcus infantis
ATCC 700779]
gi|321141412|gb|EFX36908.1| csm3 family CRISPR-associated ramp protein [Streptococcus infantis
ATCC 700779]
Length=220
Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 156/228 (69%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI++T + + TGL IG + F+AIGA D PV++DP++ LP+IPG+S+KGK+R+LLS
Sbjct 2 AFAKIQVTAQIRLETGLHIGTSNAFAAIGATDSPVIKDPITNLPIIPGSSIKGKMRSLLS 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
+ + E +KP ED + RLFG++ + Y GRL+FRD L NKD+L++ G K+ T
Sbjct 62 KVH---NERLAKKPGEDGELLSRLFGNSSDNRYKMGRLIFRDAFLINKDELDSLGVKSYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S FAF L+YE++ S D++ EDF
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRKSAFAFELIYEITD-----------DSEDQVEEDF 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F +LKA G D S L +L
Sbjct 168 KVILDGLKLLELDYLGGSGSRGYGKVVFEDLKANTVFGNYDVSRLNEL 215
>gi|270292488|ref|ZP_06198699.1| CRISPR-associated RAMP protein, Csm3 family [Streptococcus sp.
M143]
gi|270278467|gb|EFA24313.1| CRISPR-associated RAMP protein, Csm3 family [Streptococcus sp.
M143]
Length=220
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/228 (51%), Positives = 150/228 (66%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI++T + + TGL IG + F+AIGA D PV++DP++ LP+IPG+S+KGK+R LL+
Sbjct 2 AFAKIKVTAQIRLETGLHIGTSNAFAAIGATDSPVIKDPITNLPIIPGSSIKGKMRILLA 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
R Y KP ED I RLFG++ + Y GRL+FRD LTNK DL++R K T
Sbjct 62 RVYNT---KLAEKPGEDGEIISRLFGNSSDKNYKVGRLIFRDAFLTNKKDLDSRAVKGYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S F F L+YEV+ S ++ EDF
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRDSIFGFELIYEVTD-----------KSQAQVEEDF 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F +LKA G D S L +L
Sbjct 168 KVILDGLKLLELDYLGGSGSRGYGKVVFEDLKANTVFGNYDVSRLNEL 215
>gi|312278323|gb|ADQ62980.1| CRISPR-associated protein, Csm3 family [Streptococcus thermophilus
ND03]
gi|339278115|emb|CCC19863.1| hypothetical protein STH8232_1164 [Streptococcus thermophilus
JIM 8232]
Length=220
Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/228 (49%), Positives = 157/228 (69%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI+ + + + TGL IG D F+AIGA+D PV++DP++ LP+IPG+SLKGK+RTLL+
Sbjct 2 TFAKIKFSAQIRLETGLHIGGSDAFAAIGAIDSPVIKDPITNLPIIPGSSLKGKMRTLLA 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
+ Y E KP++D + RLFG++++ + GRL+FRD L+N D+L++ G ++ T
Sbjct 62 KVY---NEKVAEKPSDDSDILSRLFGNSKDKRFKMGRLIFRDAFLSNADELDSLGVRSYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S F F L+YE++ +E + +++ EDF
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRNSTFDFELIYEIT-----DENE------NQVEEDF 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F NLKA G D L +L
Sbjct 168 KVIRDGLKLLELDYLGGSGSRGYGKVAFENLKATTVFGNYDVKTLNEL 215
>gi|55820997|ref|YP_139439.1| hypothetical protein stu0962 [Streptococcus thermophilus LMG
18311]
gi|55736982|gb|AAV60624.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
Length=220
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/228 (48%), Positives = 156/228 (69%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI+ + + + TGL IG D F+AIGA+D PV++DP++ LP+IPG+SLKGK+RTLL+
Sbjct 2 TFAKIKFSAQIRLETGLHIGGSDAFAAIGAIDSPVIKDPITNLPIIPGSSLKGKMRTLLA 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
+ Y E KP++D + RLFG++++ + GRL+FRD L+N D+L++ G ++ T
Sbjct 62 KVY---NEKVAEKPSDDSDILSRLFGNSKDKRFKMGRLIFRDAFLSNADELDSLGVRSYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S F F L+YE++ +E + +++ EDF
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRTSTFDFELIYEIT-----DENE------NQVEEDF 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F LKA G D L +L
Sbjct 168 KVIRDGLKLLELDYLGGSGSRGYGKVAFEKLKATTVFGNYDVKTLNEL 215
>gi|116627768|ref|YP_820387.1| hypothetical protein STER_0975 [Streptococcus thermophilus LMD-9]
gi|116101045|gb|ABJ66191.1| CRISPR-associated protein, Csm3 family [Streptococcus thermophilus
LMD-9]
Length=220
Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/228 (48%), Positives = 156/228 (69%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI+ + + + TGL IG D F+AIGA+D PV++DP++ +P+IPG+SLKGK+RTLL+
Sbjct 2 TFAKIKFSAQIRLETGLHIGGSDAFAAIGAIDSPVIKDPITNIPIIPGSSLKGKMRTLLA 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
+ Y E KP++D + RLFG++++ + GRL+FRD L+N D+L++ G ++ T
Sbjct 62 KVY---NEKVAEKPSDDSDILSRLFGNSKDKRFKMGRLIFRDAFLSNADELDSLGVRSYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S F F L+YE++ +E + +++ EDF
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRNSTFDFELIYEIT-----DENE------NQVEEDF 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F LKA G D L +L
Sbjct 168 KVIRDGLKLLELDYLGGSGSRGYGKVAFEKLKATTVFGNYDVKTLNEL 215
>gi|55822916|ref|YP_141357.1| hypothetical protein str0962 [Streptococcus thermophilus CNRZ1066]
gi|55738901|gb|AAV62542.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066]
Length=220
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/228 (48%), Positives = 156/228 (69%), Gaps = 16/228 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
++AKI+ + + + TGL IG D F+AIGA+D PV++DP++ LP+IPG+SLKGK+RTLL+
Sbjct 2 TFAKIKFSAQIRLETGLHIGGSDAFAAIGAIDSPVIKDPITNLPIIPGSSLKGKMRTLLA 61
Query 64 RQYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLT 121
+ Y E KP++D + RLFG++++ + GRL+FRD L+N D+L++ G ++ T
Sbjct 62 KVY---NEKVAEKPSDDSDILSRLFGNSKDKRFKMGRLIFRDAFLSNADELDSLGVRSYT 118
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN I+R+TA+AN RQ+ER I S F F L+YE++ +E + +++ ED
Sbjct 119 EVKFENTIDRITAEANPRQIERAIRTSTFDFELIYEIT-----DENE------NQVEEDS 167
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKL 229
I GLKLLELDYLGGSG+RGYG+V F NLKA G D L +L
Sbjct 168 KVIRDGLKLLELDYLGGSGSRGYGKVAFENLKATTVFGNYDVKTLNEL 215
>gi|334308471|gb|EGL99457.1| CRISPR-associated RAMP Csm3 [Lactobacillus salivarius NIAS840]
Length=221
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/222 (49%), Positives = 145/222 (66%), Gaps = 18/222 (8%)
Query 6 AKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQ 65
+K++I G + V +GL IG F+AIGAVD PV++DPL+ LP+IPG+SLKGK+RTLL++
Sbjct 3 SKLKIEGIIKVESGLHIGDSGEFAAIGAVDSPVIKDPLTNLPIIPGSSLKGKIRTLLAKT 62
Query 66 YGADTETFYRKPNEDHAHIRRLFGDT-----EEYMTGRLVFRDTKLTNKDDLEARGAKTL 120
Y D+ + N D I+RLFG T E + GRL+FRD+ L+N +LE GA+
Sbjct 63 YNNDSIGSKKAINNDDPRIKRLFGATPKDENEPIIIGRLIFRDSILSNAKELEQLGAENY 122
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
TE+KFEN I+R TA A RQ+ERVI GS+F F ++Y+V G E+ E+ ED
Sbjct 123 TEIKFENTIDRFTAVAKPRQIERVIRGSKFNFEIIYDV-----GNEK--------EVEED 169
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALD 222
+ G KLLE DYLGGSG+RGYG+VKF NL + +G D
Sbjct 170 IQLVKTGFKLLENDYLGGSGSRGYGKVKFENLSIKPVLGDYD 211
>gi|227890793|ref|ZP_04008598.1| CRISPR-associated Cmr4 family protein [Lactobacillus salivarius
ATCC 11741]
gi|227867202|gb|EEJ74623.1| CRISPR-associated Cmr4 family protein [Lactobacillus salivarius
ATCC 11741]
Length=221
Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/221 (50%), Positives = 145/221 (66%), Gaps = 18/221 (8%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K++I GT+ + TGL IG F+AIGA+D PV++D L+ LP+IPG+SLKGK+RTLL++ Y
Sbjct 4 KLKIEGTIKIETGLHIGGSTEFAAIGAIDSPVIKDSLTNLPIIPGSSLKGKMRTLLAKAY 63
Query 67 GADTETFYRKPNEDHAHIRRLFGDTE-----EYMTGRLVFRDTKLTNKDDLEARGAKTLT 121
T N D I+RLFG T + + GRL+FRD+ L+NK++L GAK+ T
Sbjct 64 NDAPLTSGTSANNDDYRIKRLFGATTQNEDGQLIIGRLIFRDSILSNKEELAQLGAKSYT 123
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
E KFEN INR TA A RQ+ERVI GS+F F L+Y+V +K S E+ ED
Sbjct 124 ETKFENTINRFTAIATPRQIERVIRGSKFDFELIYDV--------EKES-----EVEEDI 170
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALD 222
+ GL+LLE DYLGGSG+RGYG+VKF NL ++ +G D
Sbjct 171 QLVKTGLELLENDYLGGSGSRGYGKVKFENLSIKSVLGDYD 211
>gi|291460039|ref|ZP_06599429.1| CRISPR-associated RAMP protein, Csm3 family [Oribacterium sp.
oral taxon 078 str. F0262]
gi|291417380|gb|EFE91099.1| CRISPR-associated RAMP protein, Csm3 family [Oribacterium sp.
oral taxon 078 str. F0262]
Length=245
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/250 (46%), Positives = 154/250 (62%), Gaps = 30/250 (12%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
+AKIEI+GT+ ++TG IGA D F+AIGAVD PV+RD + PMIPG+SLKGK+R+LL++
Sbjct 2 FAKIEISGTMKLVTGTHIGASDAFTAIGAVDSPVIRDARTMEPMIPGSSLKGKLRSLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEE------------------YMTGRLVFRDTKL 106
+Y D + P+ D+A ++ LFG + GRL+F D L
Sbjct 62 RYNRDP---FDPPDRDNAELKSLFGFARKNEGGERKGEEKENEENGRARAGRLLFSDMFL 118
Query 107 TNKDDLEARGAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEE 166
+N +L G TE+KFEN INR++A AN RQ+ERVI G+EF SL+YE P +
Sbjct 119 SNGAELSELGIHC-TEIKFENTINRLSAMANPRQIERVIRGTEFGLSLIYE-----PEQR 172
Query 167 QKASLPSSDE--IIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGS 224
+K S + DE I+ DF I G +LL+ DYLGG G+RGYG+V+F LKA VG L
Sbjct 173 EKGS-EAEDEKRILRDFELIKEGFRLLQYDYLGGHGSRGYGKVRFEGLKAETVVGELRSE 231
Query 225 LLEKLNHELA 234
++E+ NH L
Sbjct 232 IIEQCNHLLG 241
>gi|327469966|gb|EGF15430.1| csm3 family CRISPR-associated ramp protein [Streptococcus sanguinis
SK330]
Length=236
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/226 (46%), Positives = 147/226 (66%), Gaps = 16/226 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
+Y+K++I+G + + +GL IG + F+AIGA + P+++DPL+ LP IPG++LKGK+R+LL
Sbjct 2 TYSKVKISGIIELKSGLHIGTSNAFAAIGATNNPIIKDPLTNLPYIPGSTLKGKMRSLLY 61
Query 64 R-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
R Y ++T K ++D I RLFG++E Y GRLVFRD L NK++L R T TE
Sbjct 62 RTDYNSNTT---EKLSKDSLEISRLFGNSETYKIGRLVFRDAFLNNKEELGKR-VSTYTE 117
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN INR+TA+A RQ+ER I SEFAF ++Y + Q+ L E+ +D
Sbjct 118 VKFENTINRITAEATPRQVERAIRESEFAFEIIYSI--------QEKELT---EVEKDME 166
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEK 228
+ G +LLE DYLGGSG+RGYG+V F N + + G D ++K
Sbjct 167 ILKAGFELLEWDYLGGSGSRGYGKVCFKNFEVKTVFGEFDEDRIKK 212
>gi|325687528|gb|EGD29549.1| csm3 family CRISPR-associated ramp protein [Streptococcus sanguinis
SK72]
Length=236
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/226 (47%), Positives = 146/226 (65%), Gaps = 16/226 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
+Y+K++I+G + + +GL IG + F+AIGA + P+++DPL+ LP IPG++LKGK+R+LL
Sbjct 2 TYSKVKISGIIELKSGLHIGTSNAFAAIGATNNPIIKDPLTNLPYIPGSTLKGKMRSLLY 61
Query 64 R-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
R Y +T K ++D I RLFG++E Y GRLVFRD L NK++L R T TE
Sbjct 62 RTDYNNNTSD---KLSKDSLEISRLFGNSETYKIGRLVFRDAFLNNKEELGKR-VSTYTE 117
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN INR+TA+A RQ+ER I SEFAF ++Y + Q+ L E+ ED
Sbjct 118 VKFENTINRITAEATPRQVERAIRESEFAFEIIYSI--------QENELI---EVEEDME 166
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEK 228
+ G +LLE DYLGGSG+RGYG+V F N + + G D ++K
Sbjct 167 ILKAGFELLEWDYLGGSGSRGYGKVCFKNFEVKTVFGEFDEYRIKK 212
>gi|125718069|ref|YP_001035202.1| hypothetical protein SSA_1249 [Streptococcus sanguinis SK36]
gi|125497986|gb|ABN44652.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
gi|327474439|gb|EGF19845.1| csm3 family CRISPR-associated ramp protein [Streptococcus sanguinis
SK408]
Length=236
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/226 (46%), Positives = 147/226 (66%), Gaps = 16/226 (7%)
Query 4 SYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLS 63
+Y+K++I+G + + +GL IG + F+AIGA + P+++DPL+ LP IPG++LKGK+R+LL
Sbjct 2 TYSKVKISGIIELKSGLHIGTSNAFAAIGATNNPIIKDPLTNLPYIPGSTLKGKMRSLLY 61
Query 64 R-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
R Y ++T K ++D I RLFG++E Y GRLVFRD L NK++L R T TE
Sbjct 62 RTDYNSNTT---EKLSKDSLEISRLFGNSETYKIGRLVFRDAFLNNKEELGKR-VSTYTE 117
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN INR+TA+A RQ+ER I SEFAF ++Y + Q+ L E+ +D
Sbjct 118 VKFENTINRITAEATPRQVERAIRESEFAFEIIYSI--------QEKELT---EVEKDME 166
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEK 228
+ G +LLE DY+GGSG+RGYG+V F N + + G D ++K
Sbjct 167 ILKAGFELLEWDYIGGSGSRGYGKVCFKNFEVKTVFGEFDEYRIKK 212
>gi|301299527|ref|ZP_07205796.1| CRISPR-associated RAMP protein, Csm3 family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852874|gb|EFK80489.1| CRISPR-associated RAMP protein, Csm3 family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length=221
Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/221 (48%), Positives = 143/221 (65%), Gaps = 18/221 (8%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K++I GT+ V +GL IG F+AIGA+D PV++D L+ LP+IPG+SLKGK+RTLL++ Y
Sbjct 4 KLKIEGTIKVESGLHIGGSTEFAAIGAIDSPVIKDSLTNLPIIPGSSLKGKMRTLLAKAY 63
Query 67 GADTETFYRKPNEDHAHIRRLFGDTE-----EYMTGRLVFRDTKLTNKDDLEARGAKTLT 121
N D I+RLFG T + + GRL+FRD+ L+N+++L GAK+ T
Sbjct 64 NDAPLVSGTSANNDDYRIKRLFGATTQNADGQLIIGRLIFRDSILSNREELAQLGAKSYT 123
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
E KFEN I+R TA A RQ+ERVI GS+F F L+Y+V +K S E+ ED
Sbjct 124 ETKFENTIDRFTAVATPRQIERVIRGSKFDFELIYDV--------EKES-----EVEEDI 170
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALD 222
+ GL+LLE DYLGGSG+RGYG+VKF NL + +G D
Sbjct 171 QLVKTGLELLENDYLGGSGSRGYGKVKFENLSIKPVLGNYD 211
>gi|315925059|ref|ZP_07921276.1| csm3 family CRISPR-associated ramp protein [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621958|gb|EFV01922.1| csm3 family CRISPR-associated ramp protein [Pseudoramibacter
alactolyticus ATCC 23263]
Length=233
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/234 (45%), Positives = 143/234 (62%), Gaps = 15/234 (6%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
+ KI+ITG + V+TG+ IG F+AIGAVD PVVRD + LPMIPG+SLKGK+R LL+R
Sbjct 2 FGKIQITGQIKVVTGMHIGGSTAFAAIGAVDSPVVRDVRTNLPMIPGSSLKGKMRALLAR 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
+ ++D I RLFG ++ RL+F D L N++ L +G ++ E
Sbjct 62 ELNTKVAA---SADQDDERILRLFGSAQKGSLRRSRLIFSDQFLVNEEALRDQGLSSMVE 118
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
+KFEN INR TA AN RQ+ER + GS F +L+Y+V + EE +A D
Sbjct 119 IKFENTINRATAVANPRQLERAVRGSVFDLNLIYDVDRESDSEEIEA----------DMA 168
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
+A G+ LLE+DYLGGSG+RGYG+++F L A+ A+G L L+ + N L V
Sbjct 169 TLAEGMCLLEMDYLGGSGSRGYGKIRFLKLSAQKAIGDLPADLIARCNEALQRV 222
>gi|253578038|ref|ZP_04855310.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850356|gb|EES78314.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length=221
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/228 (45%), Positives = 145/228 (64%), Gaps = 19/228 (8%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y KI I+G + V TG+ IG F+AIGAVD P++RD + LPMIPG+SLKGK+R+LL++
Sbjct 2 YGKIRISGNILVKTGMHIGGSGAFAAIGAVDSPIIRDARTNLPMIPGSSLKGKMRSLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTE--EYMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
++ +PNEDH I RLFG ++ RL+F D L N+++L G +++TE
Sbjct 62 EFNERVV----EPNEDHERITRLFGSSKRGNIKRSRLLFSDMVLKNEEELRDAGLQSMTE 117
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN+I+R TA AN RQ+ER + GS F L+YE+ E +ED
Sbjct 118 VKFENSISRATAVANPRQIERAVRGSVFKLDLIYELE-------------EEQEFLEDME 164
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLN 230
+A +KLL+ DYLGG+G+RGYG+++F ++ A VG +D +LLEK N
Sbjct 165 TLAEAMKLLQYDYLGGNGSRGYGKIQFQDIYTDAVVGHVDNTLLEKCN 212
>gi|345284420|gb|AEN78273.1| CRISPR-associated RAMP protein, Csm3 family [Lactobacillus ruminis
ATCC 27782]
Length=222
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/240 (48%), Positives = 148/240 (62%), Gaps = 26/240 (10%)
Query 3 TSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLL 62
T +KI +GT+ + +GL IG GD F+AIGA D +VRD ++ +P+IPG+SLKGK+RTLL
Sbjct 2 TKLSKIRFSGTIELESGLHIGGGDAFAAIGAADSTIVRDAVTNMPVIPGSSLKGKMRTLL 61
Query 63 SRQYGADTETFYRKPNEDHAHIRRLFGDTEEY-------MTGRLVFRDTKLTNKDDLEAR 115
+R Y E PN+D I RLFG + Y + RL+FRD+ LTN +L R
Sbjct 62 ARAY---NEQVAVTPNDDDERITRLFGASSGYGKDGRCPLPARLIFRDSILTNGGELLER 118
Query 116 GAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSD 175
GA + TEVKFEN INRVTA AN RQ+ER I S F F L+Y+V D
Sbjct 119 GADSYTEVKFENTINRVTAVANPRQIERAIRMSRFDFELIYDVV-------------EED 165
Query 176 EIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAA 235
E+ ED + I G +LLELDYLGG+G+RGYG++KF L+A G D + +LN +L A
Sbjct 166 EVEEDLDTILDGFRLLELDYLGGNGSRGYGKIKFDGLRAETVFGDYD---VTRLNEKLEA 222
>gi|229826460|ref|ZP_04452529.1| hypothetical protein GCWU000182_01833 [Abiotrophia defectiva
ATCC 49176]
gi|229789330|gb|EEP25444.1| hypothetical protein GCWU000182_01833 [Abiotrophia defectiva
ATCC 49176]
Length=229
Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/229 (44%), Positives = 142/229 (63%), Gaps = 22/229 (9%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
+AKIEI+G + +TG+ IG D FSAIGAVD PV+RD +S P+IPG+SLKGK+R+LL+R
Sbjct 9 FAKIEISGIVEAVTGIHIGGNDQFSAIGAVDSPVIRDKMSDNPIIPGSSLKGKLRSLLAR 68
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTG-----RLVFRDTKLTNKDDLEARGAKT 119
QY + NED I+RLFG +++ G RL+F D L N +L+ G +
Sbjct 69 QYNT---GMVKDCNEDDVRIKRLFGSSKKDEKGRIYASRLIFSDLMLDNAKELKEIGV-S 124
Query 120 LTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIE 179
+TEVKFEN INR+TA AN RQ+ER I G+ + +++Y +L + E E
Sbjct 125 VTEVKFENTINRLTAIANPRQIERAIRGTRYKLNIIY-------------NLENEAEFEE 171
Query 180 DFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEK 228
D + G++L+E DY+GG G+RGYG++KF L+ + G + LEK
Sbjct 172 DMKTLKDGMRLIEYDYIGGHGSRGYGKIKFEKLEIKCVTGQIADDKLEK 220
>gi|114567269|ref|YP_754423.1| hypothetical protein Swol_1754 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338204|gb|ABI69052.1| CRISPR-associated protein, Csm3 family [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length=233
Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/237 (46%), Positives = 140/237 (60%), Gaps = 25/237 (10%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y KI I +TVLTG+ IG FSAIGAVD PV+RD + PM+PG+SLKGK+RTLL++
Sbjct 4 YGKILIKCKMTVLTGMHIGGSSAFSAIGAVDSPVIRDSFTGEPMLPGSSLKGKMRTLLAK 63
Query 65 QYGADTETFYRKPNEDHAHIRRLFG------DTEEYMTGRLVFRDTKLTNKDDLEARGAK 118
++P +D I+RLFG E RL F D L N D L+ R
Sbjct 64 --AIKNHYITQEPAKDPEEIKRLFGTAGDNRKQEWPKAARLQFYDAFLVNADTLKNRSG- 120
Query 119 TLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEII 178
+TEVKFEN INR+TA AN RQ+ERV+ GSEFA +LVY+ + +D +
Sbjct 121 -MTEVKFENTINRLTAIANPRQIERVVRGSEFAINLVYD-------------MEDTDSLK 166
Query 179 EDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGAL--DGSLLEKLNHEL 233
DF IARGLKLL +DYLGG G+RGYG+V F++ + G D LL K+ E+
Sbjct 167 SDFTNIARGLKLLSMDYLGGHGSRGYGKVGFTDFEVVVKEGECPEDVDLLLKILKEV 223
>gi|291539922|emb|CBL13033.1| CRISPR-associated protein, Csm3 family [Roseburia intestinalis
XB6B4]
Length=220
Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/234 (43%), Positives = 146/234 (63%), Gaps = 18/234 (7%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
+AK++I+G L +TGL IG FSAIGAVD PV+RD + +PMIPG+SLKGK+RTLL++
Sbjct 2 FAKVKISGVLETITGLHIGGSSAFSAIGAVDSPVIRDARTNMPMIPGSSLKGKLRTLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTE--EYMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
+Y +T + P++D + LFG + + T +++F D L N D+L+ G TE
Sbjct 62 KYN---QTVAKTPDDDAVCLTSLFGSAKKGQVKTSKILFNDMFLENMDELKYAGLTGATE 118
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN+I R TA AN RQ+ERV+ G++F L+YEV+ + E++ DF
Sbjct 119 VKFENSIQRTTAVANPRQIERVVRGAKFPMQLIYEVT-------------NESEMVHDFE 165
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
+ G KLLE DYLGGSG+RGYG+VK ++ +G + +L + ++AV
Sbjct 166 ILKDGFKLLEYDYLGGSGSRGYGRVKIMDIHVEPVIGEVSEDVLSQCQKIMSAV 219
>gi|240143672|ref|ZP_04742273.1| CRISPR-associated RAMP protein, Csm3 family [Roseburia intestinalis
L1-82]
gi|257204349|gb|EEV02634.1| CRISPR-associated RAMP protein, Csm3 family [Roseburia intestinalis
L1-82]
Length=220
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/234 (43%), Positives = 146/234 (63%), Gaps = 18/234 (7%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
+AK++I+G L +TGL IG FSAIGAVD PV+RD + +PMIPG+SLKGK+RTLL++
Sbjct 2 FAKVKISGVLETITGLHIGGSSAFSAIGAVDSPVIRDARTNMPMIPGSSLKGKLRTLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTE--EYMTGRLVFRDTKLTNKDDLEARGAKTLTE 122
+Y +T + P++D + LFG + + T +++F D L N D+L+ G TE
Sbjct 62 KYN---QTVAKTPDDDAVCLTSLFGSAKKGQVKTSKILFNDMFLENMDELKYAGLTGATE 118
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
VKFEN+I R TA AN RQ+ERV+ G++F L+YEV+ E++ DF
Sbjct 119 VKFENSIQRTTAVANPRQIERVVRGAKFPMQLIYEVT-------------DESEMVHDFE 165
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLEKLNHELAAV 236
+ G +LLE DYLGGSG+RGYG+VK +++ +G + +L + ++AV
Sbjct 166 ILKDGFQLLEYDYLGGSGSRGYGRVKIMDIRVEPVIGEVSEDVLSQCKKIMSAV 219
>gi|225018977|ref|ZP_03708169.1| hypothetical protein CLOSTMETH_02928 [Clostridium methylpentosum
DSM 5476]
gi|224948257|gb|EEG29466.1| hypothetical protein CLOSTMETH_02928 [Clostridium methylpentosum
DSM 5476]
Length=258
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/249 (43%), Positives = 144/249 (58%), Gaps = 27/249 (10%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y K++I+GT+ VLTGL IG F+ IG VD PVVRD ++LP+IPG+SLKGK+RTLL+R
Sbjct 2 YKKLKISGTIEVLTGLHIGGSSSFAVIGTVDSPVVRDVRTQLPIIPGSSLKGKMRTLLAR 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFG-----DTEE------YMTGRLVFRDTKLTNKDDLE 113
+ + + D I RLFG D+ E RL F D L N D L
Sbjct 62 AKAKTVQELSQGYDNDPDEILRLFGKSAKKDSNEQKGQNKLSVSRLQFADCFLENADALL 121
Query 114 ARGAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPS 173
G +TEVK ENAI R++++AN R +ERV+ G+EF+F+ +YE+ GE+
Sbjct 122 EYG---VTEVKTENAIARLSSEANPRPIERVVRGAEFSFNCMYELY--ADGEQ-----FD 171
Query 174 SDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARA------AVGALDGSLLE 227
+ + +DF+ IA GL LL+LDYLGG GTRGYG++ F NL G + LL+
Sbjct 172 EENLKKDFDNIALGLSLLQLDYLGGHGTRGYGRIHFKNLTVEELSFGDNTTGQMKKELLD 231
Query 228 KLNHELAAV 236
L +L V
Sbjct 232 LLKAKLQQV 240
>gi|295105103|emb|CBL02647.1| CRISPR-associated protein, Csm3 family [Faecalibacterium prausnitzii
SL3/3]
Length=228
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/211 (46%), Positives = 128/211 (61%), Gaps = 21/211 (9%)
Query 6 AKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQ 65
KI I L V TGL IG FSAIG VD PV+RDP + LP++PG+SLKGK+RTLL+R+
Sbjct 3 GKILIKCDLVVRTGLHIGGSSSFSAIGTVDSPVIRDPFTGLPIVPGSSLKGKLRTLLARR 62
Query 66 YGADTETFYRKPN--EDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLTEV 123
+ ET P+ D + R+FG +E RL F D L N D L+ G +TEV
Sbjct 63 SCVNGETL---PDFSADGEVLLRMFGGSEPVRFARLQFADAFLLNYDQLKGVG---VTEV 116
Query 124 KFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFNA 183
K EN INR+T+KAN RQ+ERVI GS F ++VY +S E+ ED +
Sbjct 117 KSENTINRLTSKANPRQIERVIAGSRFGVNIVYNLS-------------DPKEMEEDLSL 163
Query 184 IARGLKLLELDYLGGSGTRGYGQVKFSNLKA 214
+++ +KLL+LDYLGG G+RG G+V F N +
Sbjct 164 LSKAMKLLQLDYLGGHGSRGNGRVSFQNFQV 194
>gi|121533438|ref|ZP_01665266.1| CRISPR-associated RAMP protein, Csm3 family [Thermosinus carboxydivorans
Nor1]
gi|121307997|gb|EAX48911.1| CRISPR-associated RAMP protein, Csm3 family [Thermosinus carboxydivorans
Nor1]
Length=238
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/215 (47%), Positives = 133/215 (62%), Gaps = 18/215 (8%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
+ T + KI + L+++TGL IGA ++IG VD V+RDPL+R PMIPG+SLKGK+RT
Sbjct 6 IATIFGKINLQAKLSLVTGLHIGASKDNASIGDVDCIVIRDPLTRRPMIPGSSLKGKIRT 65
Query 61 LLSRQYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKT- 119
LL++ + +P+ D + RLFG ++ RL F D +T+ + T
Sbjct 66 LLAKALSEN--PVLGEPDSDPIEVTRLFGSSKPVKHARLQFYDVFMTDDSANKISRMDTD 123
Query 120 --LTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEI 177
LTEVKFENAI+R+TA AN RQ+ERV G+EFAF LVY + + DE
Sbjct 124 LYLTEVKFENAIDRLTAVANPRQVERVPAGAEFAFRLVYNIE-------------ALDEA 170
Query 178 IEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
D A+A GLKLLELDYLGG G+RGYG+VKF++
Sbjct 171 AADLKALADGLKLLELDYLGGHGSRGYGRVKFADF 205
>gi|292669140|ref|ZP_06602566.1| csm3 family CRISPR-associated ramp protein [Selenomonas noxia
ATCC 43541]
gi|292649192|gb|EFF67164.1| csm3 family CRISPR-associated ramp protein [Selenomonas noxia
ATCC 43541]
Length=246
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/216 (43%), Positives = 127/216 (59%), Gaps = 21/216 (9%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K+EI L + TGL IGA FS IGAVD P +RDP+++ P+IPG+SLKGK+RTLL+R +
Sbjct 16 KLEIEAILCLKTGLHIGASSDFSPIGAVDSPFLRDPMTKRPIIPGSSLKGKIRTLLARSF 75
Query 67 GADTETFYRKPNEDHAHIRRLFGDTEEYMTG----RLVFRDTKLTNKDD---LEARGAKT 119
+ E F K +ED I+RLFG + G RL F D ++ + E
Sbjct 76 STN-EYFLNKIDEDSTTIQRLFGSAAQGKAGGKAARLQFSDIRMRKESYQYFAEMELDTY 134
Query 120 LTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIE 179
+ E+KFEN I+R++A AN RQ+ERV G+EF F LVY + E+ E
Sbjct 135 IGEIKFENTISRISAAANPRQIERVPAGAEFDFRLVYNIE-------------DEGELAE 181
Query 180 DFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKAR 215
D +A G++LL++DYLGG G+RGYG+V + +
Sbjct 182 DMQLLANGIRLLQMDYLGGHGSRGYGRVSLHDFHVK 217
>gi|237741576|ref|ZP_04572057.1| CRISPR-associated ramp protein [Fusobacterium sp. 4_1_13]
gi|229429224|gb|EEO39436.1| CRISPR-associated ramp protein [Fusobacterium sp. 4_1_13]
Length=235
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/216 (44%), Positives = 132/216 (62%), Gaps = 19/216 (8%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
M T K+ I GT+ ++TGL IG FSAIGAVD V+RD ++ PMIPG+SLKGK+R
Sbjct 1 MYTLKGKLLIKGTIKLITGLHIGTSGDFSAIGAVDIIVIRDSVTNKPMIPGSSLKGKMRY 60
Query 61 LLSR-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAK- 118
LL+R +Y + ET ++ E+H +I+RLFG + +T RL F+D L++K E + +
Sbjct 61 LLARTKYNSSLET--KEIKEEHEYIKRLFGSSNPIITSRLQFQDILLSDKSIEEFKEVEF 118
Query 119 --TLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDE 176
TE+K+EN INR T AN RQ+ERV G+EF F ++Y + ++
Sbjct 119 DLPYTEIKYENTINRTTGIANPRQLERVPAGAEFDFKIIYNIE-------------KIED 165
Query 177 IIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
+ ED I + +LE DYLGG GTRGYG++KF +
Sbjct 166 LKEDMENILLMIDVLEDDYLGGHGTRGYGRIKFKDF 201
>gi|342215297|ref|ZP_08707946.1| CRISPR type III-A/MTUBE-associated RAMP protein Csm3 [Veillonella
sp. oral taxon 780 str. F0422]
gi|341588587|gb|EGS31981.1| CRISPR type III-A/MTUBE-associated RAMP protein Csm3 [Veillonella
sp. oral taxon 780 str. F0422]
Length=226
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/215 (46%), Positives = 129/215 (60%), Gaps = 26/215 (12%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR-- 64
K+ I G L + TG+ IG G+ ++ IG+VD P VRD L++ P+IPG+SLKGK+RTLL+R
Sbjct 12 KVIIQGDLVIKTGMHIGGGNDYAPIGSVDSPFVRDALTQEPIIPGSSLKGKIRTLLARYR 71
Query 65 --QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLT- 121
QY ++ T ED I+RLFG T + RL F+D ++ + L +T T
Sbjct 72 SKQYILNSIT------EDDEIIKRLFGSTSPQVISRLQFQDLFVSEESKLLFESIETDTY 125
Query 122 --EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIE 179
EVKFEN INRV++ A RQ+ERV G++F F LVY V T EI E
Sbjct 126 MGEVKFENTINRVSSVAMPRQIERVPAGTKFVFQLVYTVIDET-------------EIEE 172
Query 180 DFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKA 214
D + G+KLLELDYLGG GTRGYG+V N+K
Sbjct 173 DLKTLRAGIKLLELDYLGGHGTRGYGRVSIENIKV 207
>gi|340752431|ref|ZP_08689230.1| csm3 family CRISPR-associated ramp protein [Fusobacterium sp.
2_1_31]
gi|229422230|gb|EEO37277.1| csm3 family CRISPR-associated ramp protein [Fusobacterium sp.
2_1_31]
Length=235
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/216 (45%), Positives = 130/216 (61%), Gaps = 19/216 (8%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
M T K+ I GT+ ++TGL IG FSAIGAVD V+RD ++ PMIPG+SLKGK+R
Sbjct 1 MYTLKGKLLIKGTIKLITGLHIGTSGDFSAIGAVDTIVIRDSVTNKPMIPGSSLKGKMRY 60
Query 61 LLSR-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAK- 118
LL+R +Y + E ++ I+RLFG +E M+ RL F+D L++K E + +
Sbjct 61 LLARTKYHSSLE--LDDIKKEDVCIKRLFGSSEPIMSSRLQFQDILLSDKSIEEFKEFEF 118
Query 119 --TLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDE 176
TE+K+EN I+R T AN RQ+ERV GSEF F +VY V ++E
Sbjct 119 DLPHTEIKYENTIDRTTGIANPRQLERVPAGSEFDFQIVYNVE-------------DAEE 165
Query 177 IIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
+ ED I + +LE DYLGG GTRGYG++KF NL
Sbjct 166 VKEDMENILLMMDVLEDDYLGGHGTRGYGRIKFKNL 201
>gi|294782691|ref|ZP_06748017.1| CRISPR-associated RAMP protein, Csm3 family [Fusobacterium sp.
1_1_41FAA]
gi|294481332|gb|EFG29107.1| CRISPR-associated RAMP protein, Csm3 family [Fusobacterium sp.
1_1_41FAA]
Length=235
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/216 (45%), Positives = 127/216 (59%), Gaps = 19/216 (8%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
M T K+ I GT+ ++TGL IG FSAIGAVD V+RD ++ PMIPG+SLKGK+R
Sbjct 1 MYTLKGKLLIKGTIKLITGLHIGTSGDFSAIGAVDTIVIRDSVTNKPMIPGSSLKGKMRY 60
Query 61 LLSR-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAK- 118
LL+R +Y + E ++ I+RLFG ++ MT RL F+D L+NK E + +
Sbjct 61 LLARTKYHSSLE--LEDIKKEDICIKRLFGSSDPIMTSRLQFQDILLSNKSIEEFKEFEF 118
Query 119 --TLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDE 176
TE+K+EN I+R AN RQ+ERV GSEF F +VY V + E
Sbjct 119 DLPYTEIKYENTIDRTKGVANPRQLERVPAGSEFDFQIVYNVE-------------NPKE 165
Query 177 IIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
ED I + +LE DYLGG GTRGYG++KF NL
Sbjct 166 FEEDMKNILLMMDVLEDDYLGGHGTRGYGRIKFKNL 201
>gi|339890599|gb|EGQ79701.1| csm3 family CRISPR-associated ramp protein [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length=235
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/216 (45%), Positives = 132/216 (62%), Gaps = 19/216 (8%)
Query 1 MTTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRT 60
M + K+ I GT+ ++TGL IG FSAIGAVD V+RD ++ P+IPG+SLKGK+R
Sbjct 1 MNSIKGKLIINGTIKLITGLHIGTSGDFSAIGAVDTIVIRDSVTNKPIIPGSSLKGKMRY 60
Query 61 LLSR-QYGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAK- 118
LL+R +Y + E K ED++ I+RLFG ++ +T RL F+D L++K E + A+
Sbjct 61 LLARTKYNSSLELEDIKK-EDNS-IKRLFGSSDPVVTSRLQFQDILLSDKSIEELKDAEF 118
Query 119 --TLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDE 176
TE+K+EN I+R T AN RQ+ERV GSEF F +VY + +E
Sbjct 119 DLPYTEIKYENTIDRTTGIANPRQLERVPAGSEFDFKIVYNIE-------------KIEE 165
Query 177 IIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
I ED I + +LE DYLGG GTRGYG++KF N
Sbjct 166 INEDMENILLMIDVLEDDYLGGHGTRGYGRIKFKNF 201
>gi|238018268|ref|ZP_04598694.1| hypothetical protein VEIDISOL_00092 [Veillonella dispar ATCC
17748]
gi|237864739|gb|EEP66029.1| hypothetical protein VEIDISOL_00092 [Veillonella dispar ATCC
17748]
Length=227
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/208 (43%), Positives = 121/208 (59%), Gaps = 18/208 (8%)
Query 6 AKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQ 65
K+ ITGT+ + TG+ IGA + F+ IG+VD P +RD +S+ P+IPG+S+KGK+RTLL++
Sbjct 12 GKLLITGTIKLETGMHIGASNDFAPIGSVDTPFIRDVVSQEPIIPGSSIKGKLRTLLAKS 71
Query 66 YGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLT---E 122
+ D ED I+RLFG RL F D +T++ +T T E
Sbjct 72 HCDD--YIMNDIKEDKEEIKRLFGSVNPVKPARLQFYDLFITDETRQLFSNIETDTYMGE 129
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
+KFEN INRV AN RQ+ERV G+ F F + Y + S DE+IED N
Sbjct 130 IKFENTINRVDGSANPRQIERVPAGTVFTFKVAYNIE-------------SEDEVIEDMN 176
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFS 210
+ GL LL +DYLGG G+RGYG+V S
Sbjct 177 ILKAGLDLLGIDYLGGHGSRGYGRVNIS 204
>gi|331004041|ref|ZP_08327523.1| csm3 family CRISPR-associated ramp protein [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330411627|gb|EGG91035.1| csm3 family CRISPR-associated ramp protein [Lachnospiraceae oral
taxon 107 str. F0167]
Length=224
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/223 (43%), Positives = 129/223 (58%), Gaps = 30/223 (13%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
+ K+EI+G + LTGL IG G F+AIGAVD VV+D LPMIPG+SLKGK+R+LLS+
Sbjct 2 FGKLEISGIIESLTGLHIGGGSQFAAIGAVDSVVVKDIDDDLPMIPGSSLKGKLRSLLSK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFG--DTEEYMTGRLVFRDT-------KLTNKDDLEAR 115
Q ++ N D +RRLFG D ++ TGR+ F D K + +D++A
Sbjct 62 QLS--NGELPKEHNSDPELVRRLFGHADKKDPKTGRIYFSDIFMSEESKKRLDSEDIDA- 118
Query 116 GAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSD 175
TEVKFEN I+R+T AN RQ+ER I G ++ SL+Y +L
Sbjct 119 -----TEVKFENTISRLTGVANPRQIERAIKGIQYRISLIY-------------NLEDES 160
Query 176 EIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAV 218
EI EDF + KLL+ DYLG +G+RGYG+V +L + +
Sbjct 161 EIEEDFKTLKTVFKLLKYDYLGAAGSRGYGRVDIKDLDVKVLI 203
>gi|258645685|ref|ZP_05733154.1| CRISPR-associated RAMP protein, Csm3 family [Dialister invisus
DSM 15470]
gi|260403053|gb|EEW96600.1| CRISPR-associated RAMP protein, Csm3 family [Dialister invisus
DSM 15470]
Length=231
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/214 (44%), Positives = 123/214 (58%), Gaps = 20/214 (9%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K+ I LTV TGL IG F+ IGAVD P +RDPL++ P+IPG+SLKGK+RTLL+R
Sbjct 9 KLLIGAVLTVKTGLHIGDSSDFAPIGAVDSPFIRDPLTKAPIIPGSSLKGKMRTLLARVR 68
Query 67 GADTETFYRKPNEDHAHIRRLFGDTEEYMT--GRLVFRD--TKLTNKDDLEARGAKT-LT 121
D P ED A + RLFG + + T RL FRD K +++ + T L
Sbjct 69 --DGMAALPSPEEDEAVVARLFGISSKTETKPARLQFRDAFVKAESRNKFKNLDTDTYLG 126
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
E+K EN INR T AN R +ERV G EF F LVY + +++ ED
Sbjct 127 EIKAENTINRGTGVANPRMIERVPAGMEFDFQLVYNIE-------------DENQMKEDM 173
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKAR 215
+ RG +LL+LDYLGG G+RGYG++ FS+ +
Sbjct 174 EVLCRGFRLLQLDYLGGHGSRGYGRIAFSSFHVQ 207
>gi|323141261|ref|ZP_08076157.1| CRISPR-associated RAMP protein, Csm3 family [Phascolarctobacterium
sp. YIT 12067]
gi|322414218|gb|EFY05041.1| CRISPR-associated RAMP protein, Csm3 family [Phascolarctobacterium
sp. YIT 12067]
Length=231
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/224 (44%), Positives = 131/224 (59%), Gaps = 21/224 (9%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
KI ++G L VLTG+ IG F+ IGAVD P +RDP S P+IPG+SLKGK+RTLL++
Sbjct 15 KIVLSGILQVLTGMHIGGSSDFAPIGAVDSPFIRDPFSHAPIIPGSSLKGKIRTLLAK-I 73
Query 67 GADTETFYRKPNEDHAHIRRLFGDT-EEY-MTGRLVFRDTKLT--NKDDLEARGAKT-LT 121
D K +D+ + RLFG + + Y M RL F D +T K++ A T +
Sbjct 74 NCDGYVL-NKVADDNEIVARLFGASGKNYAMPARLQFFDLFVTEDTKNNFNAIETDTYIG 132
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
EVKFEN INR + AN RQ+ERV G+EF F LVY V + ++ ED
Sbjct 133 EVKFENTINRASGVANPRQIERVPAGAEFDFKLVYNVE-------------NLQDVQEDL 179
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSL 225
+A G +LL DYLGG G+RGYG+V+ ++K R +G LD L
Sbjct 180 ETLAEGFELLANDYLGGHGSRGYGRVRLHDIKLR-VIGKLDIDL 222
>gi|313894912|ref|ZP_07828472.1| CRISPR-associated RAMP protein, Csm3 family [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976593|gb|EFR42048.1| CRISPR-associated RAMP protein, Csm3 family [Selenomonas sp.
oral taxon 137 str. F0430]
Length=238
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/209 (43%), Positives = 126/209 (61%), Gaps = 22/209 (10%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K++IT TL + TGL IGA F+ IG VD P +RDP ++ P+IPG+SLKGK+RTLL++ Y
Sbjct 13 KLKITATLRLETGLHIGASSDFAPIGEVDSPFIRDPFTKQPIIPGSSLKGKMRTLLAKSY 72
Query 67 GADTETFYRKP-NEDHAHIRRLFGDTEEYM--TGRLVFRDTKLTNKD--DLEARGAKT-L 120
+ + P ED + RLFG ++ RL F D ++T + E T +
Sbjct 73 A---DGYILNPIEEDVPIVARLFGTAQKNTARAARLQFSDCRMTEESVAQFEMLELDTYI 129
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
E K+ENAI+R++A AN RQ+ERV G+EF+F+LVY + DE+ ED
Sbjct 130 GEAKYENAISRLSAVANPRQIERVPAGAEFSFALVYNIE-------------REDELEED 176
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKF 209
+A G +LL +DY+GG G+RGYG++ F
Sbjct 177 MKTLADGFRLLMMDYIGGHGSRGYGRISF 205
>gi|296133519|ref|YP_003640766.1| CRISPR-associated RAMP protein, Csm3 family [Thermincola sp.
JR]
gi|296032097|gb|ADG82865.1| CRISPR-associated RAMP protein, Csm3 family [Thermincola potens
JR]
Length=247
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/222 (43%), Positives = 128/222 (58%), Gaps = 27/222 (12%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y K+ G L + TGL IGA FSAIGAVD VVRDPL+R P IPG+S+KGK+R LL+R
Sbjct 8 YGKLIFYGGLRLKTGLHIGASKDFSAIGAVDTVVVRDPLTRRPYIPGSSVKGKMRYLLAR 67
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDT---------EEYMTGRLVFRDTKLTNKDDLEAR 115
Y + K + +RRLFG + + + RL F+D +T +
Sbjct 68 IYAREGRLADIKAED--IRLRRLFGCSGGGSKDNGQDRILLSRLQFQDIFMTEESAGRLE 125
Query 116 GAKT---LTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLP 172
T LTE+KFEN+I+R+TA AN RQ+ERV G+EF+F LVY V
Sbjct 126 KMDTDLYLTEIKFENSIDRLTAVANPRQLERVPAGAEFSFRLVYNVE------------- 172
Query 173 SSDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKA 214
+ DE++ED + G LLE DY+GG G+RGYG+++ ++K
Sbjct 173 NPDELVEDMRHLGYGFTLLEDDYIGGHGSRGYGRIEVLDIKV 214
>gi|312899096|ref|ZP_07758474.1| CRISPR-associated RAMP protein, Csm3 family [Megasphaera micronuciformis
F0359]
gi|310619763|gb|EFQ03345.1| CRISPR-associated RAMP protein, Csm3 family [Megasphaera micronuciformis
F0359]
Length=236
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/215 (44%), Positives = 127/215 (60%), Gaps = 28/215 (13%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K+ ITG + ++TGL IGA F+ IGAVD+ VRDPL++ P+IPG+SLKGK+RTLL++
Sbjct 15 KLMITGKVKLVTGLHIGAAQDFAPIGAVDRLFVRDPLTKEPVIPGSSLKGKLRTLLAKAE 74
Query 67 GADTETFYRKPNEDHAHIRRLFGDT--EEYMTGRLVFRDTKLTNKD-------DLEARGA 117
T K N+D I+RLFG + RL F D ++T++ DL+
Sbjct 75 A--TGYVLNKINDDSELIKRLFGSAGKDTARPSRLQFYDLRMTDESVEKFSSLDLDT--- 129
Query 118 KTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEI 177
+ EVKFEN I+R+TA A RQ+ERV G+EF F LVY + E+
Sbjct 130 -YIGEVKFENTISRLTAVATPRQIERVPSGAEFGFKLVYNIE-------------REGEL 175
Query 178 IEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
ED A+ L+LLE DYLGG G+RGYG++ F +L
Sbjct 176 KEDIQALGTALQLLENDYLGGHGSRGYGKIAFEDL 210
>gi|269798859|ref|YP_003312759.1| CRISPR-associated RAMP protein, Csm3 family [Veillonella parvula
DSM 2008]
gi|269095488|gb|ACZ25479.1| CRISPR-associated RAMP protein, Csm3 family [Veillonella parvula
DSM 2008]
Length=227
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/210 (41%), Positives = 120/210 (58%), Gaps = 22/210 (10%)
Query 6 AKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQ 65
K+ ITGT+ + TG+ IGA + F+ IG+VD P +RD +S+ P+IPG+S+KGK+RTLL++
Sbjct 12 GKLLITGTIKLETGMHIGASNDFAPIGSVDTPFIRDVVSQEPIIPGSSIKGKLRTLLAKS 71
Query 66 YGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNK-----DDLEARGAKTL 120
+ D ED I+RLFG RL F D +T++ D++E +
Sbjct 72 HCED--YIMNDIKEDKEDIKRLFGSVNPVKPARLQFYDLFITDETRQLFDNIET--DTYM 127
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
E+KFEN INRV AN RQ+ERV + F F + Y + DE+ ED
Sbjct 128 GEIKFENTINRVDGSANPRQIERVPADTVFTFKVAYNIE-------------REDEVTED 174
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFS 210
N + GL LL +DYLGG G+RGYG+V S
Sbjct 175 MNILKAGLNLLGIDYLGGHGSRGYGRVNIS 204
>gi|289549401|ref|YP_003470305.1| DNA repair protein, RAMP superfamily [Staphylococcus lugdunensis
HKU09-01]
gi|289178933|gb|ADC86178.1| putative DNA repair protein, RAMP superfamily [Staphylococcus
lugdunensis HKU09-01]
gi|339893265|emb|CCB52451.1| CRISPR associated RAMP family protein [Staphylococcus lugdunensis
N920143]
Length=214
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/223 (43%), Positives = 132/223 (60%), Gaps = 18/223 (8%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y+KI++TGT+ ++TGL IG S IGA+D PVVRD L++LP+IPG+S+KGK+R+LL+R
Sbjct 2 YSKIKVTGTIEIITGLHIGGSGEISMIGAIDSPVVRDLLTKLPIIPGSSIKGKMRSLLAR 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNK-DDLEARGAKTLT 121
+G N+D + RLFG +E+ RL D ++K + + T
Sbjct 62 DFGLKLNQ--DNHNQDDDRVLRLFGSSEKGNIQRARLQISDAFYSDKTKQIFTDNDISFT 119
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
E KFEN INR+TA AN RQ+ERV G+EF F+ +Y V T E +DF
Sbjct 120 ETKFENTINRLTAVANPRQIERVTRGAEFDFTFIYNVIDETQVE-------------DDF 166
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGS 224
N I + + LLE DYLGG GTRG G+++F ++ VG D +
Sbjct 167 NNIKKAILLLENDYLGGGGTRGNGRIEFKDINIETVVGEYDST 209
>gi|341822663|emb|CCC73587.1| CRISPR-associated RAMP protein [Megasphaera elsdenii DSM 20460]
Length=227
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/222 (41%), Positives = 128/222 (58%), Gaps = 26/222 (11%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR-Q 65
K+++T L + TGL IG D F+ IGAVD V+RDP ++ P+IPG+SLKGK+R+LL R Q
Sbjct 9 KLKMTAKLRLETGLHIGGSDEFAPIGAVDSAVIRDPYTKEPIIPGSSLKGKIRSLLRRNQ 68
Query 66 YGADTETFYRKPNEDHAHIRRLFG--DTEEYMTGRLVFRDTKLTNKD--DLEARGAKT-L 120
G + ET + ++RLFG D + RL F D ++ +E T L
Sbjct 69 GGLNLET-------ESPVVKRLFGTADKQAATPARLQFLDIRMDENSVKAMEQMEMDTYL 121
Query 121 TEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIED 180
E+KFEN+IN +T +AN RQ+ERV G+ F F L+Y +S + +++ ED
Sbjct 122 GEIKFENSINALTGEANPRQIERVPAGAVFNFQLIYNIS-------------NIEQVAED 168
Query 181 FNAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALD 222
A+ G++LL DYLGG G+RGYG+V FS + G D
Sbjct 169 LQALIDGIRLLTWDYLGGHGSRGYGRVAFSCWDVQGFSGLSD 210
>gi|333976345|gb|EGL77214.1| CRISPR-associated RAMP protein, Csm3 family [Veillonella parvula
ACS-068-V-Sch12]
Length=227
Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/208 (42%), Positives = 120/208 (58%), Gaps = 18/208 (8%)
Query 6 AKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQ 65
K+ ITGT+ + TG+ IGA + F+ IG+VD P +RD +++ P+IPG+S+KGK+RTLL++
Sbjct 12 GKLLITGTIKLETGMHIGASNDFAPIGSVDTPFIRDVVTQEPIIPGSSIKGKLRTLLAKS 71
Query 66 YGADTETFYRKPNEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLT---E 122
+ D ED I+RLFG RL F D +T++ +T T E
Sbjct 72 HCND--YIMNDIKEDKEEIKRLFGSVNPVKPARLQFYDLFITDETRQLFANIETDTYMGE 129
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
+KFEN INRV AN RQ+ERV G+ F F + Y + E +A E+ ED
Sbjct 130 IKFENTINRVDGSANPRQIERVPAGTVFTFKVAYNI-------ENEA------EVTEDMK 176
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFS 210
+ GL LL +DYLGG G+RGYG+V S
Sbjct 177 ILQEGLALLGIDYLGGHGSRGYGRVNIS 204
>gi|57865882|ref|YP_190002.1| CRISPR-associated Cmr4 family protein [Staphylococcus epidermidis
RP62A]
gi|57636540|gb|AAW53328.1| CRISPR-associated protein, TM1792 family [Staphylococcus epidermidis
RP62A]
Length=214
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/226 (43%), Positives = 132/226 (59%), Gaps = 18/226 (7%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y+KI+I+GT+ V+TGL IG G S IGA+D PVVRD ++LP+IPG+S+KGK+R LL++
Sbjct 2 YSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNK-DDLEARGAKTLT 121
+G + N+D + RLFG +E+ RL D + K + A+ T
Sbjct 62 HFGLKMKQ--ESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYT 119
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
E KFEN INR+TA AN RQ+ERV GSEF F +Y V EE + +DF
Sbjct 120 ETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVD-----EESQVE--------DDF 166
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLE 227
I + + LLE DYLGG GTRG G+++F + VG D + L+
Sbjct 167 ENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLK 212
>gi|329736393|gb|EGG72662.1| CRISPR-associated RAMP protein, Csm3 family [Staphylococcus epidermidis
VCU045]
gi|341656721|gb|EGS80430.1| CRISPR-associated RAMP protein, Csm3 family [Staphylococcus epidermidis
VCU037]
Length=214
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/226 (43%), Positives = 133/226 (59%), Gaps = 18/226 (7%)
Query 5 YAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSR 64
Y+KI+I+GT+ V+TGL IG G S IGA+D PVVRD ++LP+IPG+S+KGK+R+LL++
Sbjct 2 YSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRSLLAK 61
Query 65 QYGADTETFYRKPNEDHAHIRRLFGDTEE--YMTGRLVFRDTKLTNK-DDLEARGAKTLT 121
+G + N+D + RLFG +E+ RL D + K + A+ T
Sbjct 62 HFGLKMKQ--ESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYT 119
Query 122 EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDF 181
E KFEN INR+TA AN RQ+ERV GSEF + +Y V EE + +DF
Sbjct 120 ETKFENTINRLTAVANPRQIERVTRGSEFDYVFIYNVD-----EESQVE--------DDF 166
Query 182 NAIARGLKLLELDYLGGSGTRGYGQVKFSNLKARAAVGALDGSLLE 227
I + + LLE DYLGG GTRG G+++F + VG D + L+
Sbjct 167 ENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLK 212
>gi|20090782|ref|NP_616857.1| hypothetical protein MA1933 [Methanosarcina acetivorans C2A]
gi|19915844|gb|AAM05337.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length=258
Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/221 (39%), Positives = 123/221 (56%), Gaps = 28/221 (12%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
KI ITG + V+TG+ IGA IG +D PV+RDP++ P IPG+SLKGK+R+L +
Sbjct 13 KILITGEMKVVTGMHIGASKETVKIGGIDSPVIRDPMTDFPYIPGSSLKGKLRSLSEKSL 72
Query 67 GADTETFYRKPN-------EDHAHIRRLFGDT-------EEYMTGRLVFRDTKLTNKDDL 112
+ P+ ++H I RLFG + ++++ RL+ RD L+N +L
Sbjct 73 EKELFAISHNPDINIHVCTDEHCEICRLFGSSKKDKNEEQKHIPSRLIVRDMHLSNDKEL 132
Query 113 -EARGAKTLTEVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASL 171
+ TE KFEN+I+R+++ AN RQ+ER+ G++F F LVY+
Sbjct 133 FDIDTGLPYTEWKFENSIDRISSAANPRQIERIPAGAKFKFELVYDAE------------ 180
Query 172 PSSDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQVKFSNL 212
E+ ED I LKLLE D LGG G+RGYG+VKF +
Sbjct 181 -EETELEEDITRIQMALKLLEQDALGGHGSRGYGKVKFERV 220
>gi|303231919|ref|ZP_07318627.1| CRISPR-associated RAMP protein, Csm3 family [Veillonella atypica
ACS-049-V-Sch6]
gi|302513348|gb|EFL55382.1| CRISPR-associated RAMP protein, Csm3 family [Veillonella atypica
ACS-049-V-Sch6]
Length=227
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/208 (40%), Positives = 121/208 (59%), Gaps = 20/208 (9%)
Query 7 KIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTLLSRQY 66
K+ ITGT+ V TG+ IGA + F+ IGAVD P +RD +++ P++PG+S+KGK+RTLL++
Sbjct 13 KLLITGTIKVETGMHIGASNDFAPIGAVDSPFIRDVVTQEPILPGSSIKGKLRTLLAK-- 70
Query 67 GADTETFYRKP-NEDHAHIRRLFGDTEEYMTGRLVFRDTKLTNKDDLEARGAKTLT---E 122
++ + + ++D I+RLFG RL F D +T++ +T T E
Sbjct 71 -SNCDGYIMNAIDKDKEEIKRLFGSVNPVKPARLQFYDLFITDETRQLFANIETDTYMGE 129
Query 123 VKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLPSSDEIIEDFN 182
+KFEN I+RV A RQ+ERV G+ F F + Y + + E+ ED
Sbjct 130 IKFENVIDRVDGSAKPRQIERVPAGTVFEFKVTYNIE-------------NESEVTEDMR 176
Query 183 AIARGLKLLELDYLGGSGTRGYGQVKFS 210
+ GL LLE+DYLGG G+RGYG+V S
Sbjct 177 ILQEGLALLEIDYLGGHGSRGYGRVNIS 204
>gi|334126729|ref|ZP_08500677.1| csm3 family CRISPR-associated ramp protein [Centipeda periodontii
DSM 2778]
gi|333391139|gb|EGK62260.1| csm3 family CRISPR-associated ramp protein [Centipeda periodontii
DSM 2778]
Length=239
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/235 (43%), Positives = 135/235 (58%), Gaps = 33/235 (14%)
Query 2 TTSYAKIEITGTLTVLTGLQIGAGDGFSAIGAVDKPVVRDPLSRLPMIPGTSLKGKVRTL 61
+T K++I L + TGL IGA F+ IGAVD P +RDP+++ P+IPG+SLKGK+RTL
Sbjct 5 STLKGKLDIRARLRLETGLHIGASSDFAPIGAVDSPFLRDPMTKRPIIPGSSLKGKLRTL 64
Query 62 LSRQYGADTETF-YRKPNEDHAHIRRLFGDTEEYMT----GRLVFRDTKLTNKDDLEARG 116
L+R TE + ++D A IRRLFG + RL F D ++ N + G
Sbjct 65 LARSM---TEGYILHDVSKDCAEIRRLFGAAAKGEAGGRLSRLQFYDLRM-NDGSSDRFG 120
Query 117 AKTLT----EVKFENAINRVTAKANLRQMERVIPGSEFAFSLVYEVSFGTPGEEQKASLP 172
A L EVK+EN I+RVTA AN RQ+ERV G+EF F LVY +
Sbjct 121 AMELDTYIGEVKWENTIDRVTAAANPRQIERVPAGAEFDFRLVYNIE------------- 167
Query 173 SSDEIIEDFNAIARGLKLLELDYLGGSGTRGYGQ-------VKFSNLKARAAVGA 220
DE++ED + GL+LL++DYLGG G+RGYG+ V + +L A AV A
Sbjct 168 HEDELMEDMRLLGEGLRLLQMDYLGGHGSRGYGRLSLREFSVDYFSLSAPEAVSA 222
Lambda K H
0.316 0.135 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 319551017258
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40