BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2822c Length=124 Score E Sequences producing significant alignments: (Bits) Value gi|15609959|ref|NP_217338.1| hypothetical protein Rv2822c [Mycob... 251 2e-65 gi|340627818|ref|YP_004746270.1| hypothetical protein MCAN_28461... 181 3e-44 gi|322375485|ref|ZP_08049998.1| CRISPR-associated protein, Csm2 ... 103 8e-21 gi|125718070|ref|YP_001035203.1| hypothetical protein SSA_1250 [... 103 8e-21 gi|327469965|gb|EGF15429.1| csm2 family CRISPR-associated protei... 103 1e-20 gi|325687529|gb|EGD29550.1| csm2 family CRISPR-associated protei... 100 7e-20 gi|322387544|ref|ZP_08061153.1| csm2 family CRISPR-associated pr... 100 8e-20 gi|270292487|ref|ZP_06198698.1| CRISPR-associated protein, Csm2 ... 96.7 1e-18 gi|55820996|ref|YP_139438.1| hypothetical protein stu0961 [Strep... 96.7 1e-18 gi|116627767|ref|YP_820386.1| CRISPR-system related protein [Str... 96.3 1e-18 gi|331004042|ref|ZP_08327524.1| hypothetical protein HMPREF0491_... 94.0 6e-18 gi|229826459|ref|ZP_04452528.1| hypothetical protein GCWU000182_... 92.8 2e-17 gi|227890792|ref|ZP_04008597.1| conserved hypothetical protein [... 91.7 4e-17 gi|240143673|ref|ZP_04742274.1| CRISPR-associated protein, Csm2 ... 87.0 9e-16 gi|334308470|gb|EGL99456.1| CRISPR-associated protein, Csm2 fami... 85.5 3e-15 gi|339278114|emb|CCC19862.1| hypothetical protein STH8232_1163 [... 85.1 3e-15 gi|114567270|ref|YP_754424.1| hypothetical protein Swol_1755 [Sy... 84.7 4e-15 gi|253578039|ref|ZP_04855311.1| CRISPR-associated protein [Rumin... 83.2 1e-14 gi|296133520|ref|YP_003640767.1| CRISPR-associated protein, Csm2... 82.4 2e-14 gi|291460040|ref|ZP_06599430.1| CRISPR-associated protein, Csm2 ... 81.6 4e-14 gi|345284421|gb|AEN78274.1| CRISPR-associated protein, Csm2 fami... 77.4 6e-13 gi|313894781|ref|ZP_07828341.1| CRISPR-associated protein, Csm2 ... 76.3 2e-12 gi|315925060|ref|ZP_07921277.1| csm2 family CRISPR-associated pr... 73.6 1e-11 gi|224543485|ref|ZP_03684024.1| hypothetical protein CATMIT_0269... 70.9 7e-11 gi|121533439|ref|ZP_01665267.1| CRISPR-associated protein, Csm2 ... 70.5 7e-11 gi|334126730|ref|ZP_08500678.1| csm2 family CRISPR-associated pr... 70.5 8e-11 gi|315641552|ref|ZP_07896621.1| csm2 family CRISPR-associated pr... 70.1 1e-10 gi|323141262|ref|ZP_08076158.1| CRISPR-associated protein, Csm2 ... 69.7 1e-10 gi|341822662|emb|CCC73586.1| CRISPR-associated protein [Megaspha... 67.8 5e-10 gi|342215298|ref|ZP_08707947.1| CRISPR type III-A/MTUBE-associat... 67.4 6e-10 gi|225018976|ref|ZP_03708168.1| hypothetical protein CLOSTMETH_0... 65.5 3e-09 gi|339893264|emb|CCB52450.1| CRISPR associated protein [Staphylo... 65.1 3e-09 gi|289549400|ref|YP_003470304.1| CRISPR-associated protein [Stap... 65.1 3e-09 gi|57865883|ref|YP_190003.1| CRISPR-associated Csm2 family prote... 63.5 1e-08 gi|341656706|gb|EGS80415.1| CRISPR-associated protein, Csm2 fami... 63.2 1e-08 gi|312899095|ref|ZP_07758473.1| CRISPR-associated protein, Csm2 ... 63.2 1e-08 gi|340752430|ref|ZP_08689229.1| csm2 family CRISPR-associated pr... 62.8 1e-08 gi|237741575|ref|ZP_04572056.1| predicted protein [Fusobacterium... 59.7 1e-07 gi|294782692|ref|ZP_06748018.1| CRISPR-associated protein, Csm2 ... 58.9 2e-07 gi|339890600|gb|EGQ79702.1| Csm2 family CRISPR-associated protei... 58.9 3e-07 gi|295105104|emb|CBL02648.1| CRISPR-associated protein, Csm2 fam... 58.5 3e-07 gi|269798860|ref|YP_003312760.1| CRISPR-associated protein, Csm2... 58.2 4e-07 gi|303231971|ref|ZP_07318679.1| CRISPR-associated protein, Csm2 ... 57.4 8e-07 gi|333976300|gb|EGL77169.1| CRISPR-associated protein, Csm2 fami... 57.0 9e-07 gi|238018267|ref|ZP_04598693.1| hypothetical protein VEIDISOL_00... 56.6 1e-06 gi|260424751|ref|ZP_05733155.2| CRISPR-associated protein, Csm2 ... 55.5 3e-06 gi|301299526|ref|ZP_07205795.1| conserved domain protein [Lactob... 48.1 4e-04 gi|292669141|ref|ZP_06602567.1| Csm2 family CRISPR-associated pr... 45.4 0.003 gi|329736392|gb|EGG72661.1| CRISPR-associated protein, Csm2 fami... 42.4 0.022 gi|335429797|ref|ZP_08556695.1| Xenobiotic-transporting ATPase [... 34.7 5.0 >gi|15609959|ref|NP_217338.1| hypothetical protein Rv2822c [Mycobacterium tuberculosis H37Rv] gi|15842363|ref|NP_337400.1| hypothetical protein MT2889 [Mycobacterium tuberculosis CDC1551] gi|31793998|ref|NP_856491.1| hypothetical protein Mb2846c [Mycobacterium bovis AF2122/97] 77 more sequence titles Length=124 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/124 (100%), Positives = 124/124 (100%), Gaps = 0/124 (0%) Query 1 MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKE 60 MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKE Sbjct 1 MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKE 60 Query 61 KVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLD 120 KVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLD Sbjct 61 KVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLD 120 Query 121 PKDK 124 PKDK Sbjct 121 PKDK 124 >gi|340627818|ref|YP_004746270.1| hypothetical protein MCAN_28461 [Mycobacterium canettii CIPT 140010059] gi|340006008|emb|CCC45177.1| putative uncharacterized protein [Mycobacterium canettii CIPT 140010059] Length=130 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/124 (75%), Positives = 103/124 (84%), Gaps = 1/124 (0%) Query 1 MSVIQDDYVKQAE-VIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLK 59 MSVIQDDYVKQAE VIRGLPKK FELTTTQLRVLLSLTAQLFDEAQ S++ L L+ Sbjct 1 MSVIQDDYVKQAEQVIRGLPKKNGDFELTTTQLRVLLSLTAQLFDEAQLSSDQNLSPALR 60 Query 60 EKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYL 119 +KVQYLRVRFVYQ+GRE AV+ FV A LL+ L IGDSRD LL+FC YMEAL AYKK+L Sbjct 61 DKVQYLRVRFVYQAGREKAVRVFVERAGLLDELAQIGDSRDRLLKFCHYMEALVAYKKFL 120 Query 120 DPKD 123 DPK+ Sbjct 121 DPKE 124 >gi|322375485|ref|ZP_08049998.1| CRISPR-associated protein, Csm2 family [Streptococcus sp. C300] gi|321279748|gb|EFX56788.1| CRISPR-associated protein, Csm2 family [Streptococcus sp. C300] Length=126 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/131 (47%), Positives = 90/131 (69%), Gaps = 13/131 (9%) Query 1 MSVIQDD-YVKQAE-VIRGLPKKKNG------FELTTTQLRVLLSLTAQLFDEAQQSANP 52 M+++ DD YV +AE VI+ L K+ F LTTT++R LL+LT+ LFDE++ + Sbjct 1 MAILTDDNYVDKAEKVIKSLNHTKDHRNNKIKFFLTTTKIRNLLNLTSNLFDESKVRS-- 58 Query 53 TLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEAL 112 ++L +K+ YLRV+FVYQSGRE AVK V+ A++L+ L+ I ++++ L RFCRYMEAL Sbjct 59 --YKELADKIAYLRVQFVYQSGRETAVKDLVKKAEILDILKEI-NNKESLQRFCRYMEAL 115 Query 113 AAYKKYLDPKD 123 AY ++ KD Sbjct 116 VAYFRFYGGKD 126 >gi|125718070|ref|YP_001035203.1| hypothetical protein SSA_1250 [Streptococcus sanguinis SK36] gi|125497987|gb|ABN44653.1| Conserved uncharacterized protein, putative [Streptococcus sanguinis SK36] gi|327474438|gb|EGF19844.1| csm2 family CRISPR-associated protein [Streptococcus sanguinis SK408] Length=176 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/130 (50%), Positives = 86/130 (67%), Gaps = 12/130 (9%) Query 3 VIQDDYVKQAE-VIRGLPKKK----NG---FELTTTQLRVLLSLTAQLFDEAQQSANPTL 54 ++ DDYV +A+ VI L K NG F+LT+TQ+R L +LT+ LFDE++ + Sbjct 51 ILTDDYVDKADLVIHTLDSDKKQLNNGKIKFKLTSTQIRNLAALTSNLFDESKTKNDI-- 108 Query 55 PRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAA 114 +L+EK+ YLR++FVYQSGRE AV+ FV+ A LLEAL I D L RFCRYMEAL A Sbjct 109 -EELREKISYLRIQFVYQSGREPAVEDFVKKAGLLEALTEIQDI-PSLQRFCRYMEALIA 166 Query 115 YKKYLDPKDK 124 Y K+ +D+ Sbjct 167 YFKFNGGRDQ 176 >gi|327469965|gb|EGF15429.1| csm2 family CRISPR-associated protein [Streptococcus sanguinis SK330] Length=179 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/133 (46%), Positives = 85/133 (64%), Gaps = 15/133 (11%) Query 3 VIQDDYVKQAEVI-----------RGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSAN 51 ++ DDYV +A+++ G K K F+LT+TQ+R L +LT+ LFDE++ + Sbjct 51 ILTDDYVDKADLVIHSLKNSGTYTEGPNKGKIKFKLTSTQIRNLAALTSNLFDESKTKND 110 Query 52 PTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEA 111 +L+EK+ YLR++FVYQSGRE AV+ FV+ A LLEAL I D L RFCRYMEA Sbjct 111 I---EELREKISYLRIQFVYQSGREPAVEDFVKKAGLLEALTEIQDI-PSLQRFCRYMEA 166 Query 112 LAAYKKYLDPKDK 124 L AY K+ +D+ Sbjct 167 LIAYFKFNGGRDQ 179 >gi|325687529|gb|EGD29550.1| csm2 family CRISPR-associated protein [Streptococcus sanguinis SK72] Length=179 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 59/127 (47%), Positives = 82/127 (65%), Gaps = 15/127 (11%) Query 3 VIQDDYVKQAEVI-----------RGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSAN 51 ++ D YV +A+++ G K K F+LT+TQ+R L +LT+ LFDE++ + Sbjct 51 ILTDAYVDKADLVIHNLKNSGTYTEGPNKDKIKFKLTSTQIRNLAALTSNLFDESKTKND 110 Query 52 PTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEA 111 +L+EK+ YLR++FVYQSGRE AV+ FV+ A LLEAL+ I D L RFCRYMEA Sbjct 111 I---EELREKISYLRIQFVYQSGREPAVEDFVKKAGLLEALKEIQDI-PSLQRFCRYMEA 166 Query 112 LAAYKKY 118 L AY K+ Sbjct 167 LIAYFKF 173 >gi|322387544|ref|ZP_08061153.1| csm2 family CRISPR-associated protein [Streptococcus infantis ATCC 700779] gi|321141411|gb|EFX36907.1| csm2 family CRISPR-associated protein [Streptococcus infantis ATCC 700779] Length=126 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/131 (47%), Positives = 87/131 (67%), Gaps = 13/131 (9%) Query 1 MSVIQDD-YVKQAE-VIRGLPKKK------NGFELTTTQLRVLLSLTAQLFDEAQQSANP 52 M+++ DD YV +AE VI+ L + F LTT+++R LLSLT+ LFDE++ Sbjct 1 MAILTDDNYVDKAENVIKSLNRNTRDSRNPEAFLLTTSKIRNLLSLTSTLFDESKVRE-- 58 Query 53 TLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEAL 112 + L +K+ YLRV+FVYQSGRE AVK V+ A++L+ L+ I ++++ L RFCRYMEAL Sbjct 59 --YKDLADKIAYLRVQFVYQSGRETAVKDLVKKAEILDILKEI-NNKESLQRFCRYMEAL 115 Query 113 AAYKKYLDPKD 123 AY K+ KD Sbjct 116 VAYFKFYGGKD 126 >gi|270292487|ref|ZP_06198698.1| CRISPR-associated protein, Csm2 family [Streptococcus sp. M143] gi|270278466|gb|EFA24312.1| CRISPR-associated protein, Csm2 family [Streptococcus sp. M143] Length=126 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/131 (47%), Positives = 85/131 (65%), Gaps = 13/131 (9%) Query 1 MSVIQDD-YVKQAE-VIRGLPKKKNGFE------LTTTQLRVLLSLTAQLFDEAQQSANP 52 M+++ DD YV +AE I+ L K F+ L+ ++LR LLSLT+ LFDE++ Sbjct 1 MAILTDDNYVDKAEKTIKNLVTDKRNFKNKNSDVLSMSKLRNLLSLTSTLFDESKVRE-- 58 Query 53 TLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEAL 112 +LK+K+ YLRV+FVYQSGRE+AV V+ ++L L+ I +SR+ L RFCRYMEAL Sbjct 59 --YEELKDKIAYLRVQFVYQSGREEAVLDLVQKGEILPILKEI-NSRESLQRFCRYMEAL 115 Query 113 AAYKKYLDPKD 123 AY K+ KD Sbjct 116 VAYFKFYGGKD 126 >gi|55820996|ref|YP_139438.1| hypothetical protein stu0961 [Streptococcus thermophilus LMG 18311] gi|55736981|gb|AAV60623.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|312278322|gb|ADQ62979.1| CRISPR-associated protein, Csm2 family [Streptococcus thermophilus ND03] Length=126 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/131 (48%), Positives = 84/131 (65%), Gaps = 13/131 (9%) Query 1 MSVIQD-DYVKQAE-----VIRGLPKKKN--GFELTTTQLRVLLSLTAQLFDEAQQSANP 52 M+++ D +YV AE + R +KN F LTT++LR LLSLT+ LFDE++ Sbjct 1 MTILTDENYVDIAEKAILKLERNTRNRKNPDAFFLTTSKLRNLLSLTSTLFDESKVKEYD 60 Query 53 TLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEAL 112 L +++ YLRV+FVYQ+GRE AVK + A++LEAL+ I D R+ L RFCRYMEAL Sbjct 61 ALL----DRIAYLRVQFVYQAGREIAVKDLIEKAQILEALKEIKD-RETLQRFCRYMEAL 115 Query 113 AAYKKYLDPKD 123 AY K+ KD Sbjct 116 VAYFKFYGGKD 126 >gi|116627767|ref|YP_820386.1| CRISPR-system related protein [Streptococcus thermophilus LMD-9] gi|116101044|gb|ABJ66190.1| CRISPR-associated protein, Csm2 family [Streptococcus thermophilus LMD-9] Length=126 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/131 (48%), Positives = 84/131 (65%), Gaps = 13/131 (9%) Query 1 MSVIQD-DYVKQAE-----VIRGLPKKKN--GFELTTTQLRVLLSLTAQLFDEAQQSANP 52 M+++ D +YV AE + R +KN F LTT++LR LLSLT+ LFDE++ Sbjct 1 MTILTDENYVDIAEKAILKLERNTRNRKNPDAFFLTTSKLRNLLSLTSTLFDESKVKEYD 60 Query 53 TLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEAL 112 L +++ YLRV+FVYQ+GRE AVK + A++LEAL+ I D R+ L RFCRYMEAL Sbjct 61 DLL----DRIAYLRVQFVYQAGREIAVKDLIEKAQILEALKEIKD-RETLQRFCRYMEAL 115 Query 113 AAYKKYLDPKD 123 AY K+ KD Sbjct 116 VAYFKFYGGKD 126 >gi|331004042|ref|ZP_08327524.1| hypothetical protein HMPREF0491_02386 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411628|gb|EGG91036.1| hypothetical protein HMPREF0491_02386 [Lachnospiraceae oral taxon 107 str. F0167] Length=146 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 48/124 (39%), Positives = 81/124 (66%), Gaps = 2/124 (1%) Query 1 MSVIQDDYVKQAE-VIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLK 59 + + ++YVK+AE VI L K+ LTT+++R LL++ + ++ +A++ + TL Sbjct 23 IELTNENYVKKAEDVINNLIAGKSKI-LTTSKIRKLLAMVSDMYTKAKRLKSNTLSSDWV 81 Query 60 EKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYL 119 K+QY ++ +Y++GRE +VK FV A+++E ++ I +D L+ FC YMEAL AY+KYL Sbjct 82 SKIQYFKMHTIYEAGREPSVKKFVEEAQIIEQIDKIKADKDKLILFCLYMEALVAYRKYL 141 Query 120 DPKD 123 KD Sbjct 142 GGKD 145 >gi|229826459|ref|ZP_04452528.1| hypothetical protein GCWU000182_01832 [Abiotrophia defectiva ATCC 49176] gi|229789329|gb|EEP25443.1| hypothetical protein GCWU000182_01832 [Abiotrophia defectiva ATCC 49176] Length=130 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 49/125 (40%), Positives = 81/125 (65%), Gaps = 7/125 (5%) Query 1 MSVIQDDYVKQAE-VIRGLPK-KKNGFEL-----TTTQLRVLLSLTAQLFDEAQQSANPT 53 M + ++Y+K+AE VI L K K+ G +L TTT+LR +LS+ ++++ +A + Sbjct 1 MILTNENYLKEAEKVIDNLCKDKRTGKQLYAPKITTTKLRKILSMVSEIYSDASRLREEK 60 Query 54 LPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALA 113 L ++K ++QYL++ +Y+ GRE VK FV +KL AL+ + DS+ L+ FC Y+EAL Sbjct 61 LDTEMKSRLQYLKLHIIYEEGREAVVKEFVEESKLTAALDEVKDSKSQLINFCHYVEALV 120 Query 114 AYKKY 118 AY+K+ Sbjct 121 AYRKF 125 >gi|227890792|ref|ZP_04008597.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227867201|gb|EEJ74622.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length=160 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 67/100 (67%), Gaps = 6/100 (6%) Query 27 LTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNA 86 LT TQLR LL++T+ ++DEA+ + + EK+ YL+V+F+YQSGR AVK FV A Sbjct 65 LTNTQLRNLLAMTSAVYDEARNNGFD----HVNEKIAYLKVQFIYQSGRNLAVKAFVEVA 120 Query 87 KLLEALEGIGDSR--DGLLRFCRYMEALAAYKKYLDPKDK 124 +L+E ++ I D + D LLRFC YMEAL AY KY DK Sbjct 121 QLVELVDKIRDLKKMDDLLRFCHYMEALIAYFKYYGGADK 160 >gi|240143673|ref|ZP_04742274.1| CRISPR-associated protein, Csm2 family [Roseburia intestinalis L1-82] gi|257204350|gb|EEV02635.1| CRISPR-associated protein, Csm2 family [Roseburia intestinalis L1-82] gi|291539921|emb|CBL13032.1| CRISPR-associated protein, Csm2 family [Roseburia intestinalis XB6B4] Length=130 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/130 (37%), Positives = 82/130 (64%), Gaps = 6/130 (4%) Query 1 MSVIQDDYVKQAE-VIRGLPKKKNG-----FELTTTQLRVLLSLTAQLFDEAQQSANPTL 54 M + +++YV AE I+ L +K+ +TT+++R LL++T+ ++++ S + L Sbjct 1 MKLTEENYVGIAEQAIKELCSEKDQKGRLVGPVTTSKIRNLLAMTSDIYNDVVNSQSDKL 60 Query 55 PRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAA 114 ++ ++ Y+++RF+Y++GRE VK V AK+LE LE I SRD + F RYMEAL A Sbjct 61 NAEIIGRINYMKIRFIYEAGREPKVKKLVDKAKILEHLEEIKGSRDQYILFSRYMEALVA 120 Query 115 YKKYLDPKDK 124 Y+K+ +D+ Sbjct 121 YRKFYGGRDE 130 >gi|334308470|gb|EGL99456.1| CRISPR-associated protein, Csm2 family [Lactobacillus salivarius NIAS840] Length=152 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/117 (45%), Positives = 73/117 (63%), Gaps = 9/117 (7%) Query 6 DDYVKQAEVIRGLPK----KKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEK 61 + YV +A I G+ K K N LT TQLR LL++T ++ EAQ+ ++ K Sbjct 35 ESYVDEARKIIGIFKEEKFKINKNILTNTQLRNLLAMTNSVYAEAQKKGFDSV----KGD 90 Query 62 VQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 + YL++ F+YQSGR AVK FV A+L++ +E + + +D L RFCRYMEAL AY KY Sbjct 91 IAYLKIHFIYQSGRNIAVKAFVELAQLIKVIEELKNLKD-LQRFCRYMEALVAYFKY 146 >gi|339278114|emb|CCC19862.1| hypothetical protein STH8232_1163 [Streptococcus thermophilus JIM 8232] Length=130 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/135 (43%), Positives = 79/135 (59%), Gaps = 17/135 (12%) Query 1 MSVIQD-DYVKQAEVIRGLPKKKN--GFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQ 57 M+++ D +YV +AE L +K N + LTT+Q+R LLSL + L+D +++ + Sbjct 1 MAILTDENYVDKAERAISLLEKDNKGNYLLTTSQIRKLLSLCSSLYDRSKERKFD----E 56 Query 58 LKEKVQYLRVRFVYQSGREDA---------VKTFVRNAKLLEALEGIGDSRDGLLRFCRY 108 L V YLRV+FVYQSGR VK V ++LEAL+ I D R+ L RFCRY Sbjct 57 LINDVSYLRVQFVYQSGRNSVRVNRQTFFPVKDLVEKGQILEALKEIKD-RETLQRFCRY 115 Query 109 MEALAAYKKYLDPKD 123 MEAL AY K+ KD Sbjct 116 MEALVAYFKFYGGKD 130 >gi|114567270|ref|YP_754424.1| hypothetical protein Swol_1755 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338205|gb|ABI69053.1| hypothetical protein Swol_1755 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length=158 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/121 (39%), Positives = 76/121 (63%), Gaps = 4/121 (3%) Query 7 DYVKQAE-VIRGLPKK--KNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQ 63 +Y QAE VI+ L K +N TT+++R +L+ ++++++ + + L L+ +++ Sbjct 38 NYTAQAEQVIQELKKSMGRNYQNFTTSKIRNILAQVSEIYNDVRAENDVFLSPDLQNRIE 97 Query 64 YLRVRFVYQSGREDAV-KTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPK 122 YL+VR VY+ GRE + K FV AKLL+ L IGD+R ++F RYMEAL AY ++ + Sbjct 98 YLKVRLVYECGREPWIIKPFVDKAKLLDLLNNIGDNRQNFIKFARYMEALVAYHRFYGGR 157 Query 123 D 123 D Sbjct 158 D 158 >gi|253578039|ref|ZP_04855311.1| CRISPR-associated protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850357|gb|EES78315.1| CRISPR-associated protein [Ruminococcus sp. 5_1_39BFAA] Length=131 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/131 (36%), Positives = 83/131 (64%), Gaps = 7/131 (5%) Query 1 MSVIQDDYVKQAE-VIRGL---PKKKNGFEL---TTTQLRVLLSLTAQLFDEAQQSANPT 53 M + +++YV +AE I+ L K+K ++ TT+++R LL++TA ++++ + Sbjct 1 MRINENNYVDKAEEAIKSLVEESKQKCRGKVNIVTTSKIRNLLAMTADIYNQVLTYTSEK 60 Query 54 LPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALA 113 L ++ +++YLR+RF+Y+ GRE VK FV+ A++LE L+ I S+ L F +YMEAL Sbjct 61 LDDEICGRIEYLRIRFIYECGREPKVKAFVKQAEILEILKEIRQSKKNYLLFSKYMEALI 120 Query 114 AYKKYLDPKDK 124 A+ KY K++ Sbjct 121 AFHKYYGGKEQ 131 >gi|296133520|ref|YP_003640767.1| CRISPR-associated protein, Csm2 family [Thermincola sp. JR] gi|296032098|gb|ADG82866.1| CRISPR-associated protein, Csm2 family [Thermincola potens JR] Length=125 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/119 (43%), Positives = 72/119 (61%), Gaps = 8/119 (6%) Query 7 DYVKQA-EVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQ------QSANPTLPRQLK 59 DYVK+A EVI+ L KK+NG +TT+Q+R L+ + ++ Q + LP ++ Sbjct 4 DYVKRAAEVIKDL-KKENGKMVTTSQIRKFLAGVNAIKNKVQIRTFQGEITEGRLPEDIQ 62 Query 60 EKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 ++Q L+V+ VYQ GRE VKTFV AKLL+ ++ I S L F Y+EAL AY KY Sbjct 63 REIQALKVKLVYQCGREPKVKTFVEKAKLLDGIDAIEGSTKKFLDFAGYVEALVAYHKY 121 >gi|291460040|ref|ZP_06599430.1| CRISPR-associated protein, Csm2 family [Oribacterium sp. oral taxon 078 str. F0262] gi|291417381|gb|EFE91100.1| CRISPR-associated protein, Csm2 family [Oribacterium sp. oral taxon 078 str. F0262] Length=157 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/119 (35%), Positives = 76/119 (64%), Gaps = 2/119 (1%) Query 7 DYVKQAE-VIRGLPKKKNGFEL-TTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQY 64 +YV +AE VI+ L ++K+ + +T++LR LLS+++ +++E +L + ++ K+ Y Sbjct 38 NYVDEAEKVIKALIERKSKKNMISTSKLRNLLSMSSDIYNEILMEKGSSLSKTIEAKICY 97 Query 65 LRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKD 123 +RVRF Y++GRE++VK F+ A E ++ I SR+ F Y+E+L A+ +Y K+ Sbjct 98 MRVRFYYEAGREESVKAFLNEADAFEQIKKIEGSREKFFFFHHYLESLVAFHRYYVEKN 156 >gi|345284421|gb|AEN78274.1| CRISPR-associated protein, Csm2 family [Lactobacillus ruminis ATCC 27782] Length=145 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/133 (41%), Positives = 74/133 (56%), Gaps = 21/133 (15%) Query 8 YVKQAE-VIRGL--------PKKKNGFE--LTTTQLRVLLSLTAQLFDEAQQSANPTLPR 56 YVK AE VIR L +KNG LT + +R +LS T+ ++D + T Sbjct 17 YVKSAENVIRFLKDENFHVVTNRKNGKGDYLTMSAIRNILSETSAIYDTVRSQGVETA-- 74 Query 57 QLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIG------DSRDGLLRFCRYME 110 + K+ YL+V+ VYQSGR AVK FV+ + LL AL+ + + +D ++ FCRYME Sbjct 75 --RIKLSYLKVKLVYQSGRNAAVKRFVKVSNLLGALDEVNEYYEKPEEKDWIILFCRYME 132 Query 111 ALAAYKKYLDPKD 123 AL AY KY KD Sbjct 133 ALVAYFKYYGGKD 145 >gi|313894781|ref|ZP_07828341.1| CRISPR-associated protein, Csm2 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312976462|gb|EFR41917.1| CRISPR-associated protein, Csm2 family [Selenomonas sp. oral taxon 137 str. F0430] Length=127 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 63/120 (53%), Gaps = 6/120 (5%) Query 10 KQAEVIRGLPKKKNG-FELTTTQLRVLLSLTAQLFDEA-----QQSANPTLPRQLKEKVQ 63 K VI L + G +L Q+R LS L ++ + TLP L +VQ Sbjct 8 KAQSVIPSLMQDNRGDIKLKANQIRKFLSAVTTLTNKVNRYKMKHPHEKTLPDDLAAQVQ 67 Query 64 YLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKD 123 YLRV+ YQ+GR+ AVK FV A+L + GI +S + +F RYMEAL AY KY KD Sbjct 68 YLRVKMAYQAGRDKAVKDFVEKAQLDAVICGIKNSIETYEKFARYMEALVAYHKYYGGKD 127 >gi|315925060|ref|ZP_07921277.1| csm2 family CRISPR-associated protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621959|gb|EFV01923.1| csm2 family CRISPR-associated protein [Pseudoramibacter alactolyticus ATCC 23263] Length=132 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/110 (36%), Positives = 67/110 (61%), Gaps = 2/110 (1%) Query 10 KQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRF 69 + A VI+ L + K +TT++R LL++T+ +++E L ++ E+++YL++RF Sbjct 12 RAAHVIQDLYQNKQL--PSTTKIRDLLAMTSSIYNEILIQRQDELSAEMVERIEYLKIRF 69 Query 70 VYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYL 119 +Y++G++ F++ A LL L+ I SR L F RYMEAL A+ KY Sbjct 70 LYEAGKDKDTWFFIKKAGLLSILDEIEASRKNYLLFSRYMEALVAFYKYF 119 >gi|224543485|ref|ZP_03684024.1| hypothetical protein CATMIT_02694 [Catenibacterium mitsuokai DSM 15897] gi|224523612|gb|EEF92717.1| hypothetical protein CATMIT_02694 [Catenibacterium mitsuokai DSM 15897] Length=125 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/98 (36%), Positives = 58/98 (60%), Gaps = 1/98 (1%) Query 27 LTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNA 86 LT +Q+R +L+++A +++ +S L L +++ YL VR Y++GR VK FV A Sbjct 29 LTVSQIRNILAMSADIYNSVLESPTENLSEDLLDRISYLTVRLYYEAGRNQLVKKFVEKA 88 Query 87 KLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKDK 124 KL+E L+ +D + + YMEAL A+ +Y KD+ Sbjct 89 KLIEKLKNAKTKKD-YVDYYHYMEALVAFHRYYGGKDQ 125 >gi|121533439|ref|ZP_01665267.1| CRISPR-associated protein, Csm2 family [Thermosinus carboxydivorans Nor1] gi|121307998|gb|EAX48912.1| CRISPR-associated protein, Csm2 family [Thermosinus carboxydivorans Nor1] Length=134 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/122 (37%), Positives = 68/122 (56%), Gaps = 9/122 (7%) Query 6 DDYVKQAEVIRGLPKKKNG-FELTTTQLRVLLSLTAQLFD--EAQQSANPT------LPR 56 D+ +KQA+ I K ++G L TT+LR L+ + + EA QS LP+ Sbjct 2 DEIIKQAQKIVADLKDRDGKIRLNTTKLRKFLTAVNAINNKLEAYQSQTGAGNELKELPK 61 Query 57 QLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYK 116 L ++++YL V+ Y+SGRE VK FV AKL++ + IG S D F + +EA+ A+ Sbjct 62 PLADEIRYLEVKLAYESGREKDVKDFVTKAKLIDRIRAIGTSADKYRDFAKLIEAIVAFH 121 Query 117 KY 118 KY Sbjct 122 KY 123 >gi|334126730|ref|ZP_08500678.1| csm2 family CRISPR-associated protein [Centipeda periodontii DSM 2778] gi|333391140|gb|EGK62261.1| csm2 family CRISPR-associated protein [Centipeda periodontii DSM 2778] Length=133 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/125 (39%), Positives = 67/125 (54%), Gaps = 8/125 (6%) Query 7 DYVKQAE-VIRGLPKKKNG-FELTTTQLRVLLSLTAQLFDE-----AQQSANPTLPRQLK 59 D ++AE VI L K+ NG LTT+Q+R L+ L ++ AQ L L Sbjct 9 DIAREAENVIVRLAKEGNGRLFLTTSQIRKFLAAVNALTNKITVYRAQNDGATALTEALA 68 Query 60 EKVQYLRVRFVYQSGRED-AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 +V+YL+V+ YQ GR AV+ FV A+L E ++GIG + F Y+EAL AY KY Sbjct 69 SEVKYLKVKLAYQVGRNPRAVRPFVETARLTEWIDGIGTNIRAYEDFAHYVEALVAYHKY 128 Query 119 LDPKD 123 +D Sbjct 129 HGGRD 133 >gi|315641552|ref|ZP_07896621.1| csm2 family CRISPR-associated protein [Enterococcus italicus DSM 15952] gi|315482689|gb|EFU73216.1| csm2 family CRISPR-associated protein [Enterococcus italicus DSM 15952] Length=140 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/98 (36%), Positives = 63/98 (65%), Gaps = 4/98 (4%) Query 23 NGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTF 82 NG LTT++LR LL L ++ + S + TL ++++++YL+V+F Y+SGRE AV+TF Sbjct 40 NG--LTTSKLRNLLELINHVYTKVYNSDDTTLSEDVRDELEYLKVKFAYESGREPAVRTF 97 Query 83 VRNAKLLEALEGI--GDSRDGLLRFCRYMEALAAYKKY 118 + + + ++ + +++ L +C+Y EAL AY K+ Sbjct 98 IEKTYVDKLVDVVLKKNTKKIFLDYCKYFEALVAYAKF 135 >gi|323141262|ref|ZP_08076158.1| CRISPR-associated protein, Csm2 family [Phascolarctobacterium sp. YIT 12067] gi|322414219|gb|EFY05042.1| CRISPR-associated protein, Csm2 family [Phascolarctobacterium sp. YIT 12067] Length=162 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/127 (34%), Positives = 73/127 (58%), Gaps = 10/127 (7%) Query 7 DYVKQAE-VIRGLPKKKN----GFELTTTQLRVLLSLTAQLFDE-----AQQSANPTLPR 56 D V +AE I+GL K ++TT+Q+R L+ + ++ A+ L + Sbjct 36 DVVTEAEKAIKGLQYKDRYDNIKIDVTTSQIRKFLTAVNVVRNKVDLYKAKNKGAEALSK 95 Query 57 QLKEKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYK 116 +L ++++L+V +YQ+GR AVK F+ +KL ++GIGDS ++F +Y+EAL AY Sbjct 96 ELTAEIKFLKVNLLYQAGRTAAVKQFMTVSKLNIIIDGIGDSLARFVKFTKYVEALVAYH 155 Query 117 KYLDPKD 123 K+L +D Sbjct 156 KFLGGRD 162 >gi|341822662|emb|CCC73586.1| CRISPR-associated protein [Megasphaera elsdenii DSM 20460] Length=126 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/124 (34%), Positives = 67/124 (55%), Gaps = 7/124 (5%) Query 7 DYVKQAE-VIRGLPKKKNG-FELTTTQLRVLLSLTAQLFDE-----AQQSANPTLPRQLK 59 D K+AE I L K+ NG L T Q+R L+ + ++ A+ LP +L Sbjct 3 DIAKEAEQAILALKKQNNGKIYLKTNQIRKFLTAVNAITNKVNVYKAKHLDATELPDELA 62 Query 60 EKVQYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYL 119 ++Q+L+V+ YQ+GRE +VK F++ + + + +E +G S F Y+EAL AY K+ Sbjct 63 GEIQFLKVKAAYQAGRERSVKDFMKQSNMKQHIEAVGTSIAKYEAFAHYVEALVAYHKFY 122 Query 120 DPKD 123 KD Sbjct 123 GGKD 126 >gi|342215298|ref|ZP_08707947.1| CRISPR type III-A/MTUBE-associated protein Csm2 [Veillonella sp. oral taxon 780 str. F0422] gi|341588588|gb|EGS31982.1| CRISPR type III-A/MTUBE-associated protein Csm2 [Veillonella sp. oral taxon 780 str. F0422] Length=148 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/131 (34%), Positives = 74/131 (57%), Gaps = 19/131 (14%) Query 7 DYVKQAE-VIRGLPKKKNG-FELTTTQLRVLLS----LTAQLFDEAQQSANPT--LPRQL 58 DYV +AE VI+GL K +N L T+QLR +LS + ++ EA ++ + + +L Sbjct 3 DYVSEAESVIKGLSKNRNNEILLNTSQLRKILSAITDVKNKVIVEAAKNKDKIKRISPEL 62 Query 59 KEKVQYLRVRFVYQSGRE-----------DAVKTFVRNAKLLEALEGIGDSRDGLLRFCR 107 + ++++L+ YQ+GRE +AV F+ AKL+ L+ IG+ D +C+ Sbjct 63 QMEIRFLKTILRYQAGRELEENNKKRITTNAVDEFIEKAKLIPRLDAIGEDIDKFYEYCK 122 Query 108 YMEALAAYKKY 118 Y+E+L A+ KY Sbjct 123 YIESLVAFHKY 133 >gi|225018976|ref|ZP_03708168.1| hypothetical protein CLOSTMETH_02927 [Clostridium methylpentosum DSM 5476] gi|224948256|gb|EEG29465.1| hypothetical protein CLOSTMETH_02927 [Clostridium methylpentosum DSM 5476] Length=166 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/113 (30%), Positives = 64/113 (57%), Gaps = 1/113 (0%) Query 7 DYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQ-QSANPTLPRQLKEKVQYL 65 DY+ + + + PK + +LT TQ+R + ++++ + Q + L +++++++ Sbjct 47 DYMPKRKDEKKRPKSCDYGDLTVTQMRNMWGRVTAIYNQVRLQPSADNLSGEIQQQLRAF 106 Query 66 RVRFVYQSGREDAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 ++R VY+S R V F + + +L AL+ IG+ +D R+ RY EAL AY Y Sbjct 107 KIRLVYESARTPDVGEFCQTSSVLSALDQIGEDKDKFFRYVRYFEALVAYHYY 159 >gi|339893264|emb|CCB52450.1| CRISPR associated protein [Staphylococcus lugdunensis N920143] Length=128 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/99 (32%), Positives = 57/99 (58%), Gaps = 2/99 (2%) Query 27 LTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNA 86 LTT++LR L+ +L+ S L R ++++YL+++F Y++GRE +V F++ Sbjct 30 LTTSKLRNLMEQVNRLYTMIFNSTEEKLSRNFIDELEYLKIKFYYEAGREKSVDEFLKKT 89 Query 87 KLLEALEGI--GDSRDGLLRFCRYMEALAAYKKYLDPKD 123 + ++ + +S+ L +C+Y EAL AY KY +D Sbjct 90 LMFPIIDKVIQKESKKFFLDYCKYFEALVAYSKYYQKED 128 >gi|289549400|ref|YP_003470304.1| CRISPR-associated protein [Staphylococcus lugdunensis HKU09-01] gi|289178932|gb|ADC86177.1| CRISPR-associated protein [Staphylococcus lugdunensis HKU09-01] Length=141 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/99 (32%), Positives = 57/99 (58%), Gaps = 2/99 (2%) Query 27 LTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTFVRNA 86 LTT++LR L+ +L+ S L R ++++YL+++F Y++GRE +V F++ Sbjct 43 LTTSKLRNLMEQVNRLYTMIFNSTEEKLSRNFIDELEYLKIKFYYEAGREKSVDEFLKKT 102 Query 87 KLLEALEGI--GDSRDGLLRFCRYMEALAAYKKYLDPKD 123 + ++ + +S+ L +C+Y EAL AY KY +D Sbjct 103 LMFPIIDKVIQKESKKFFLDYCKYFEALVAYSKYYQKED 141 >gi|57865883|ref|YP_190003.1| CRISPR-associated Csm2 family protein [Staphylococcus epidermidis RP62A] gi|57636541|gb|AAW53329.1| CRISPR-associated protein, TM1810 family [Staphylococcus epidermidis RP62A] Length=128 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/103 (33%), Positives = 60/103 (59%), Gaps = 4/103 (3%) Query 23 NGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTF 82 NG LTT++LR L+ +L+ A S L + ++++YL+++F Y++GRE +V F Sbjct 28 NG--LTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEF 85 Query 83 VRNAKLLEALEGI--GDSRDGLLRFCRYMEALAAYKKYLDPKD 123 ++ + ++ + +S+ L +C+Y EAL AY KY +D Sbjct 86 LKKTLMFPIIDRVIKKESKKFFLDYCKYFEALVAYAKYYQKED 128 >gi|341656706|gb|EGS80415.1| CRISPR-associated protein, Csm2 family [Staphylococcus epidermidis VCU037] Length=141 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/103 (33%), Positives = 60/103 (59%), Gaps = 4/103 (3%) Query 23 NGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTF 82 NG LTT++LR L+ +L+ A S L + ++++YL+++F Y++GRE +V F Sbjct 41 NG--LTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEF 98 Query 83 VRNAKLLEALEGI--GDSRDGLLRFCRYMEALAAYKKYLDPKD 123 ++ + ++ + +S+ L +C+Y EAL AY KY +D Sbjct 99 LKKTLMFPIIDRVIKKESKKFFLDYCKYFEALVAYAKYYQKED 141 >gi|312899095|ref|ZP_07758473.1| CRISPR-associated protein, Csm2 family [Megasphaera micronuciformis F0359] gi|310619762|gb|EFQ03344.1| CRISPR-associated protein, Csm2 family [Megasphaera micronuciformis F0359] Length=150 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/106 (34%), Positives = 54/106 (51%), Gaps = 9/106 (8%) Query 27 LTTTQLRVLLSLTAQLFDEA---------QQSANPTLPRQLKEKVQYLRVRFVYQSGRED 77 +T +Q+R L+ L D+ Q L L +V+YL+++ YQSGR+ Sbjct 43 ITVSQIRKFLTAVNSLTDKIERYKVEHLRQGEQVLELSTDLAAEVKYLKIKLAYQSGRKS 102 Query 78 AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKD 123 +VK F + A LL + IG + + F RY+EAL AY KY +D Sbjct 103 SVKDFEKKAGLLAEISSIGKDLNKYMNFARYVEALVAYHKYYGGRD 148 >gi|340752430|ref|ZP_08689229.1| csm2 family CRISPR-associated protein [Fusobacterium sp. 2_1_31] gi|229422229|gb|EEO37276.1| csm2 family CRISPR-associated protein [Fusobacterium sp. 2_1_31] Length=122 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/102 (35%), Positives = 56/102 (55%), Gaps = 4/102 (3%) Query 27 LTTTQLRVLLS----LTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTF 82 +TTTQLR+LLS + ++ E + + +L+ +++YL V+ +YQ GRE VK F Sbjct 21 VTTTQLRLLLSNAVIIKNKIQVETRTKKGDEISEKLENEIKYLLVKHIYQCGREPKVKRF 80 Query 83 VRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDPKDK 124 + E ++ IG S F RY+E + AY KY + +K Sbjct 81 DNEFHISEKIKSIGKSAKKFNEFYRYLEEIVAYMKYYESDNK 122 >gi|237741575|ref|ZP_04572056.1| predicted protein [Fusobacterium sp. 4_1_13] gi|229429223|gb|EEO39435.1| predicted protein [Fusobacterium sp. 4_1_13] Length=119 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/101 (36%), Positives = 56/101 (56%), Gaps = 2/101 (1%) Query 20 KKKNGFELTTTQLRVLLSLTAQLFDEAQQSA--NPTLPRQLKEKVQYLRVRFVYQSGRED 77 +K N +TTTQLR+LLS + ++ Q + +L+ +++YL V+ +YQ GRE Sbjct 14 QKDNKNPVTTTQLRLLLSNAVIIKNKIQVETRKGDEISEKLENEIKYLLVKHIYQCGREP 73 Query 78 AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 VKTF + + ++ IG S F RY+E + AY KY Sbjct 74 KVKTFDNEFVISKKIKEIGKSAKKFNEFYRYLEEIVAYMKY 114 >gi|294782692|ref|ZP_06748018.1| CRISPR-associated protein, Csm2 family [Fusobacterium sp. 1_1_41FAA] gi|294481333|gb|EFG29108.1| CRISPR-associated protein, Csm2 family [Fusobacterium sp. 1_1_41FAA] Length=119 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/105 (36%), Positives = 57/105 (55%), Gaps = 6/105 (5%) Query 21 KKNGFELTTTQLRVLLS----LTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGRE 76 KKN +TTTQLR+LLS + ++ E + + +L+ +++YL V+ +YQ GRE Sbjct 17 KKNT--VTTTQLRLLLSNAVIIKNKIQVETRTKKGDEISEKLENEIKYLLVKHIYQCGRE 74 Query 77 DAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKYLDP 121 VK F + E ++ IG S F RY+E + AY KY + Sbjct 75 PKVKRFDNEFYISEKIKEIGRSAKKFNEFYRYLEEIVAYMKYYES 119 >gi|339890600|gb|EGQ79702.1| Csm2 family CRISPR-associated protein [Fusobacterium nucleatum subsp. animalis ATCC 51191] Length=120 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/94 (37%), Positives = 53/94 (57%), Gaps = 2/94 (2%) Query 27 LTTTQLRVLLSLTAQLFDEAQQSANP--TLPRQLKEKVQYLRVRFVYQSGREDAVKTFVR 84 +TT+QLR+LLS + ++ Q + +L+ +V+YL ++ +YQ GRE VK F Sbjct 22 VTTSQLRLLLSNAVVVKNKIQVEVGKGDEISEKLQNEVKYLLIKHIYQCGREPKVKKFDD 81 Query 85 NAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 K+ E ++ IG S F RY+E + AY KY Sbjct 82 YFKISEKIKEIGKSAKKFNEFYRYLEEIVAYMKY 115 >gi|295105104|emb|CBL02648.1| CRISPR-associated protein, Csm2 family [Faecalibacterium prausnitzii SL3/3] Length=150 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/120 (30%), Positives = 64/120 (54%), Gaps = 8/120 (6%) Query 3 VIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKV 62 +I ++YV AE + K+N +T T+++ LL L +++ + L ++ ++ Sbjct 23 IIPENYVDFAEQL----MKENCALITKTKIQNLLRLACDVYNNENRRTEERLLKESVNQI 78 Query 63 QYLRVRFVYQSGREDAVKTFVRNAKLLEALEGIGD----SRDGLLRFCRYMEALAAYKKY 118 + LR+R Y+ GR+ V+ FV +A L E L + +R L+ + YMEAL A+ +Y Sbjct 79 KLLRIRLAYECGRDPQVRQFVESANLFEYLAKLSSVGTCTRQDLIDYYHYMEALVAFHRY 138 >gi|269798860|ref|YP_003312760.1| CRISPR-associated protein, Csm2 family [Veillonella parvula DSM 2008] gi|269095489|gb|ACZ25480.1| CRISPR-associated protein, Csm2 family [Veillonella parvula DSM 2008] Length=170 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/103 (31%), Positives = 58/103 (57%), Gaps = 9/103 (8%) Query 25 FELTTTQLRVLLSLTAQL-----FDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGRED-- 77 F++ Q+R +LS + ++ + + LP + +V++L+ F+YQ+GR+ Sbjct 36 FDVKYAQVRKILSSVVAIKNKLGVEQRKSKSFDKLPENIAMEVRFLKTTFLYQAGRDKDN 95 Query 78 --AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 VK F+ +++L+E +E IG + FC+Y+EAL A+ KY Sbjct 96 KYPVKNFIEDSQLVEMVECIGTDVNKFEMFCKYVEALVAFYKY 138 >gi|303231971|ref|ZP_07318679.1| CRISPR-associated protein, Csm2 family [Veillonella atypica ACS-049-V-Sch6] gi|302513400|gb|EFL55434.1| CRISPR-associated protein, Csm2 family [Veillonella atypica ACS-049-V-Sch6] Length=170 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/103 (33%), Positives = 60/103 (59%), Gaps = 9/103 (8%) Query 25 FELTTTQLRVLLSLTAQLFDE--AQQSANPT---LPRQLKEKVQYLRVRFVYQSGRED-- 77 F++ Q+R +LS + ++ +Q N + LP + +V++L+ F+YQ+GR+ Sbjct 36 FDVKYAQVRKILSSVVAIKNKLGVEQRKNKSFDKLPDSIAMEVRFLKATFLYQAGRDKDY 95 Query 78 --AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 VK+F+ +++L+E +E IG FC+Y+EAL A+ KY Sbjct 96 KYPVKSFIEDSQLVEMVECIGTDVKKFDIFCKYVEALVAFYKY 138 >gi|333976300|gb|EGL77169.1| CRISPR-associated protein, Csm2 family [Veillonella parvula ACS-068-V-Sch12] Length=170 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/103 (31%), Positives = 57/103 (56%), Gaps = 9/103 (8%) Query 25 FELTTTQLRVLLSLTAQL-----FDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGRED-- 77 F++ Q+R +LS + ++ + + LP + +V++L+ F+YQ+GR+ Sbjct 36 FDVKYAQVRKILSSVVAIKNKLGVEQRKSKSFDKLPENIAMEVRFLKTTFLYQAGRDKDN 95 Query 78 --AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 VK F+ +++L+E +E IG FC+Y+EAL A+ KY Sbjct 96 KYPVKNFIEDSQLVEMVECIGTDVKKFDMFCKYVEALVAFYKY 138 >gi|238018267|ref|ZP_04598693.1| hypothetical protein VEIDISOL_00091 [Veillonella dispar ATCC 17748] gi|237864738|gb|EEP66028.1| hypothetical protein VEIDISOL_00091 [Veillonella dispar ATCC 17748] Length=170 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/103 (30%), Positives = 58/103 (57%), Gaps = 9/103 (8%) Query 25 FELTTTQLRVLLSLTAQL-----FDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGRED-- 77 F++ Q+R +LS + ++ + + LP + +V++L+ F+YQ+GR+ Sbjct 36 FDVKYAQVRKILSSVVAIKNKLGVEQRKSKSFDKLPDSIAMEVRFLKTTFLYQAGRDKDY 95 Query 78 --AVKTFVRNAKLLEALEGIGDSRDGLLRFCRYMEALAAYKKY 118 +K+F+ +++L+E +E IG FC+Y+EAL A+ KY Sbjct 96 KYPIKSFIEDSQLVEMVECIGTDVKKFDMFCKYVEALVAFYKY 138 >gi|260424751|ref|ZP_05733155.2| CRISPR-associated protein, Csm2 family [Dialister invisus DSM 15470] gi|260403054|gb|EEW96601.1| CRISPR-associated protein, Csm2 family [Dialister invisus DSM 15470] Length=133 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/134 (29%), Positives = 70/134 (53%), Gaps = 12/134 (8%) Query 1 MSVIQDDYVKQAEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEA------QQSANPTL 54 M + ++ V +A+ + G +K G +TT+Q+R L+ + ++ + TL Sbjct 1 MMLEENKIVDRAQQVMGNLSRK-GQMVTTSQIRKFLTAVNTVTEKVNAYKLEKTDEYDTL 59 Query 55 PRQLKEKVQYLRVRFVYQSGRE-----DAVKTFVRNAKLLEALEGIGDSRDGLLRFCRYM 109 P +L+ +++YL+V+ YQ GR + V+ F + A L+ ++GI S +F Y+ Sbjct 60 PVELQAQIKYLKVKLAYQIGRNRSKWGNPVEDFEKEAGLISLIDGIKSSTKEYEKFAHYI 119 Query 110 EALAAYKKYLDPKD 123 EAL A+ K+ KD Sbjct 120 EALVAFHKFYGGKD 133 >gi|301299526|ref|ZP_07205795.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852873|gb|EFK80488.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length=49 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/49 (54%), Positives = 32/49 (66%), Gaps = 2/49 (4%) Query 78 AVKTFVRNAKLLEALEGIGDSR--DGLLRFCRYMEALAAYKKYLDPKDK 124 AVK F+ A+L+E ++ I D + D LLRFC YMEAL AY KY DK Sbjct 1 AVKAFIEVAQLVELVDMIRDFKELDDLLRFCHYMEALIAYFKYYGGSDK 49 >gi|292669141|ref|ZP_06602567.1| Csm2 family CRISPR-associated protein [Selenomonas noxia ATCC 43541] gi|292649193|gb|EFF67165.1| Csm2 family CRISPR-associated protein [Selenomonas noxia ATCC 43541] Length=149 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/138 (28%), Positives = 65/138 (48%), Gaps = 22/138 (15%) Query 6 DDYVKQAE-VIRGLPKKK-----NGFELTTTQLRVLLSLTAQLFDEA------------- 46 DD +AE +I GL + NG LTT Q+R L+ L ++ Sbjct 12 DDIAGKAEKIILGLKNDRLLGGTNG--LTTNQIRKFLTAVNTLTNKIILYRYQQMKARGR 69 Query 47 QQSANPTLPRQLKEKVQYLRVRFVYQSGRED-AVKTFVRNAKLLEALEGIGDSRDGLLRF 105 +Q + +L + V++L+V+ YQ R + VK F + +L E ++ +G + F Sbjct 70 EQEKAFEMSDELAKAVRFLKVKLAYQVARGNKGVKRFAEDTRLKEYIDTVGTDLREYMAF 129 Query 106 CRYMEALAAYKKYLDPKD 123 +++EAL AY K+ K+ Sbjct 130 AQFIEALVAYHKFYGEKE 147 >gi|329736392|gb|EGG72661.1| CRISPR-associated protein, Csm2 family [Staphylococcus epidermidis VCU045] Length=102 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/62 (34%), Positives = 39/62 (63%), Gaps = 2/62 (3%) Query 23 NGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVYQSGREDAVKTF 82 NG LTT++LR L+ +L+ A S L + ++++YL+++F Y++GRE +V F Sbjct 41 NG--LTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEF 98 Query 83 VR 84 ++ Sbjct 99 LK 100 >gi|335429797|ref|ZP_08556695.1| Xenobiotic-transporting ATPase [Haloplasma contractile SSD-17B] gi|334889807|gb|EGM28092.1| Xenobiotic-transporting ATPase [Haloplasma contractile SSD-17B] Length=601 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 23/90 (26%), Positives = 40/90 (45%), Gaps = 6/90 (6%) Query 12 AEVIRGLPKKKNGFELTTTQLRVLLSLTAQLFDEAQQSANPTLPRQLKEKVQYLRVRFVY 71 A +I P+ GFE + V+L+ D+ + + + R ++ ++ V F Y Sbjct 314 AAIINIYPQLAKGFESMNSISEVVLA------DDVEDNQGKQIIRSVEGSFEFCNVNFSY 367 Query 72 QSGREDAVKTFVRNAKLLEALEGIGDSRDG 101 E A+K F N K E + +G+S G Sbjct 368 NESEEHAIKDFDLNVKKGEVIALVGESGAG 397 Lambda K H 0.319 0.136 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130872486112 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40