BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2829c
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
gi|148824019|ref|YP_001288773.1| hypothetical protein TBFG_12844... 257 4e-67
gi|15609966|ref|NP_217345.1| hypothetical protein Rv2829c [Mycob... 257 5e-67
gi|340627822|ref|YP_004746274.1| hypothetical protein MCAN_28511... 237 3e-61
gi|289758947|ref|ZP_06518325.1| LOW QUALITY PROTEIN: conserved h... 214 3e-54
gi|304415160|ref|ZP_07395880.1| PIN domain-containing addiction ... 91.3 5e-17
gi|300310409|ref|YP_003774501.1| hypothetical protein Hsero_1076... 86.3 1e-15
gi|170700746|ref|ZP_02891740.1| PilT protein domain protein [Bur... 84.7 4e-15
gi|171318767|ref|ZP_02907907.1| PilT protein domain protein [Bur... 84.7 4e-15
gi|172063736|ref|YP_001811387.1| PilT domain-containing protein ... 84.3 5e-15
gi|115358943|ref|YP_776081.1| PilT domain-containing protein [Bu... 84.3 5e-15
gi|161520340|ref|YP_001583767.1| PilT domain-containing protein ... 83.6 8e-15
gi|325527437|gb|EGD04779.1| PilT protein domain protein [Burkhol... 83.6 9e-15
gi|94266861|ref|ZP_01290520.1| PilT protein-like [delta proteoba... 81.3 5e-14
gi|163847807|ref|YP_001635851.1| PilT domain-containing protein ... 80.5 7e-14
gi|126667470|ref|ZP_01738441.1| PilT protein, N-terminal [Marino... 80.1 1e-13
gi|339327404|ref|YP_004687097.1| protein PilT [Cupriavidus necat... 79.7 1e-13
gi|329913359|ref|ZP_08275920.1| PilT protein domain protein [Oxa... 79.3 2e-13
gi|170078382|ref|YP_001735020.1| PilT domain-containing protein ... 79.3 2e-13
gi|73538099|ref|YP_298466.1| PilT protein, N-terminal [Ralstonia... 79.3 2e-13
gi|153872917|ref|ZP_02001672.1| PilT-like protein [Beggiatoa sp.... 78.6 3e-13
gi|167584214|ref|ZP_02376602.1| PilT protein domain protein [Bur... 78.2 4e-13
gi|126666672|ref|ZP_01737649.1| PilT protein, N-terminal [Marino... 76.6 1e-12
gi|94969663|ref|YP_591711.1| PilT protein-like [Candidatus Korib... 75.5 2e-12
gi|194336778|ref|YP_002018572.1| PilT protein domain-containing ... 75.1 3e-12
gi|78188638|ref|YP_378976.1| hypothetical protein Cag_0660 [Chlo... 73.2 1e-11
gi|94265591|ref|ZP_01289336.1| PilT protein-like [delta proteoba... 72.8 1e-11
gi|67459093|ref|YP_246717.1| toxin of toxin-antitoxin system [Ri... 72.0 2e-11
gi|94264667|ref|ZP_01288449.1| PilT protein-like [delta proteoba... 71.6 3e-11
gi|87125279|ref|ZP_01081125.1| hypothetical protein RS9917_07675... 71.2 4e-11
gi|126656422|ref|ZP_01727683.1| hypothetical protein CY0110_2200... 70.5 9e-11
gi|189501136|ref|YP_001960606.1| PilT protein domain-containing ... 69.3 2e-10
gi|170077037|ref|YP_001733675.1| hypothetical protein SYNPCC7002... 68.2 4e-10
gi|87123489|ref|ZP_01079340.1| PilT protein, N-terminal [Synecho... 67.8 5e-10
gi|148264444|ref|YP_001231150.1| PilT domain-containing protein ... 67.4 6e-10
gi|339481715|ref|YP_004693501.1| PilT protein domain-containing ... 67.4 7e-10
gi|91205796|ref|YP_538151.1| toxin of toxin-antitoxin (TA) syste... 67.0 8e-10
gi|110598259|ref|ZP_01386535.1| PilT protein-like [Chlorobium fe... 67.0 8e-10
gi|153868981|ref|ZP_01998692.1| PilT-like protein [Beggiatoa sp.... 66.2 1e-09
gi|78189258|ref|YP_379596.1| hypothetical protein Cag_1292 [Chlo... 65.9 2e-09
gi|297570563|ref|YP_003691907.1| PilT protein domain protein [De... 65.9 2e-09
gi|46255168|ref|YP_006080.1| hypothetical protein TT_P0097 [Ther... 65.9 2e-09
gi|308274938|emb|CBX31537.1| hypothetical protein N47_E50490 [un... 65.5 2e-09
gi|329847163|ref|ZP_08262191.1| PIN domain protein [Asticcacauli... 65.1 3e-09
gi|333982413|ref|YP_004511623.1| PilT protein domain-containing ... 65.1 4e-09
gi|333967826|gb|AEG34590.1| PilT protein domain protein [Thermus... 64.7 4e-09
gi|158339786|ref|YP_001520793.1| PilT domain-containing protein ... 64.7 4e-09
gi|116621525|ref|YP_823681.1| PilT domain-containing protein [Ca... 64.3 6e-09
gi|17228248|ref|NP_484796.1| hypothetical protein all0753 [Nosto... 64.3 6e-09
gi|297570579|ref|YP_003691923.1| PilT protein domain protein [De... 63.2 1e-08
gi|288958344|ref|YP_003448685.1| pilT protein domain-containing ... 62.8 1e-08
>gi|148824019|ref|YP_001288773.1| hypothetical protein TBFG_12844 [Mycobacterium tuberculosis F11]
gi|254365477|ref|ZP_04981522.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289746628|ref|ZP_06506006.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
28 more sequence titles
Length=134
Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 60
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV
Sbjct 5 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 64
Query 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS
Sbjct 65 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 124
Query 121 HRHPRPVTVW 130
HRHPRPVTVW
Sbjct 125 HRHPRPVTVW 134
>gi|15609966|ref|NP_217345.1| hypothetical protein Rv2829c [Mycobacterium tuberculosis H37Rv]
gi|31794005|ref|NP_856498.1| hypothetical protein Mb2853c [Mycobacterium bovis AF2122/97]
gi|121638709|ref|YP_978933.1| hypothetical protein BCG_2849c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
38 more sequence titles
Length=130
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 60
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV
Sbjct 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 60
Query 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS
Sbjct 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
Query 121 HRHPRPVTVW 130
HRHPRPVTVW
Sbjct 121 HRHPRPVTVW 130
>gi|340627822|ref|YP_004746274.1| hypothetical protein MCAN_28511 [Mycobacterium canettii CIPT
140010059]
gi|340006012|emb|CCC45182.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=130
Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/130 (92%), Positives = 125/130 (97%), Gaps = 0/130 (0%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 60
MTTVLLDSHVAYWWSAEP+RLS AS+A+E ADELAVAAISWFELAWLAE ERI LAIPV
Sbjct 1 MTTVLLDSHVAYWWSAEPERLSQTASRAVEQADELAVAAISWFELAWLAEHERIHLAIPV 60
Query 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
LSWL+QLAE++RTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS
Sbjct 61 LSWLRQLAEYLRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
Query 121 HRHPRPVTVW 130
HRHPRPVTVW
Sbjct 121 HRHPRPVTVW 130
>gi|289758947|ref|ZP_06518325.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|289714511|gb|EFD78523.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
Length=131
Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%), Gaps = 0/109 (0%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 60
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV
Sbjct 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPV 60
Query 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGW 109
LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGW
Sbjct 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGW 109
>gi|304415160|ref|ZP_07395880.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
gi|304282984|gb|EFL91427.1| PIN domain-containing addiction module [Candidatus Regiella insecticola
LSR1]
Length=136
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/134 (41%), Positives = 83/134 (62%), Gaps = 7/134 (5%)
Query 2 TTVLLDSHVAYWWSAEPQRLSMAASQAIEH---ADELAVAAISWFELAWLAEQERIQLAI 58
+ ++LD+HV WW A+ LS+ A AIE E+ +++IS +E+A L ++ER+ L++
Sbjct 5 SMIVLDTHVLVWWVADDSMLSVTAKAAIEEEQAKGEIIISSISAWEIAMLVQRERLLLSM 64
Query 59 PVLSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
V SWL ++ + VR V + VA +V LP F DPADR+I ATA + LVTKD
Sbjct 65 DVDSWLATVSQIDAVRFVPVDTEVATKSVELPGEFHKDPADRMIVATARKLAVPLVTKDE 124
Query 117 RLRSHRHPRPVTVW 130
++R++ H R T+W
Sbjct 125 KIRTYAHVR--TIW 136
>gi|300310409|ref|YP_003774501.1| hypothetical protein Hsero_1076 [Herbaspirillum seropedicae SmR1]
gi|300073194|gb|ADJ62593.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
Length=131
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEH---ADELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW LS A Q IE ++ ++AIS +E+A L E+E++ L++ V
Sbjct 2 IILDTHALVWWVGADPTLSRKARQVIEKEMAGGDIIISAISAWEIAMLVEREKLVLSMEV 61
Query 61 LSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
W+ +AE VR V + V+ AVALP F DPADR+I ATA + LVTKD ++
Sbjct 62 ERWMATVAEIEAVRMVPVDVEVSVKAVALPGEFHKDPADRMIVATARKFSIPLVTKDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYPHVK--TIW 131
>gi|170700746|ref|ZP_02891740.1| PilT protein domain protein [Burkholderia ambifaria IOP40-10]
gi|170134353|gb|EDT02687.1| PilT protein domain protein [Burkholderia ambifaria IOP40-10]
Length=131
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AI+ A LA +AIS +E+A L ER+ L + V
Sbjct 2 IVLDTHALVWWVAGDPSLSKKARSAIDRARGEGALAASAISAWEIAMLVRNERLALTMDV 61
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D ++
Sbjct 62 DTWLATVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYAHVK--TLW 131
>gi|171318767|ref|ZP_02907907.1| PilT protein domain protein [Burkholderia ambifaria MEX-5]
gi|171096040|gb|EDT40969.1| PilT protein domain protein [Burkholderia ambifaria MEX-5]
Length=131
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AI+ A LA +AIS +E+A L ER+ L + V
Sbjct 2 IVLDTHALVWWVAGDPSLSKKARSAIDRARGEGTLAASAISAWEIAMLVRNERLALTMDV 61
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D ++
Sbjct 62 DAWLATVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYAHVK--TLW 131
>gi|172063736|ref|YP_001811387.1| PilT domain-containing protein [Burkholderia ambifaria MC40-6]
gi|171996253|gb|ACB67171.1| PilT protein domain protein [Burkholderia ambifaria MC40-6]
Length=131
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AI+ A LA +AIS +E+A L ER+ L + V
Sbjct 2 IVLDTHALVWWVAGDPSLSKKARSAIDRARGEGALAASAISAWEIAMLVRNERLALTMDV 61
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D ++
Sbjct 62 DAWLATVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYAHVK--TLW 131
>gi|115358943|ref|YP_776081.1| PilT domain-containing protein [Burkholderia ambifaria AMMD]
gi|115284231|gb|ABI89747.1| PilT protein domain protein [Burkholderia ambifaria AMMD]
Length=131
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/132 (41%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AI+ A LA +AIS +E+A L ER+ L + V
Sbjct 2 IVLDTHALVWWVAGDPSLSKKARGAIDRARGEGALAASAISAWEIAMLVRNERLALTMDV 61
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D ++
Sbjct 62 DAWLATVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYAHVK--TLW 131
>gi|161520340|ref|YP_001583767.1| PilT domain-containing protein [Burkholderia multivorans ATCC
17616]
gi|189353483|ref|YP_001949110.1| PilT protein domain protein [Burkholderia multivorans ATCC 17616]
gi|160344390|gb|ABX17475.1| PilT protein domain protein [Burkholderia multivorans ATCC 17616]
gi|189337505|dbj|BAG46574.1| PilT protein domain protein [Burkholderia multivorans ATCC 17616]
Length=131
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AI+ A LA +AIS +E+A L +R+ L + V
Sbjct 2 IVLDTHALVWWVAGDPSLSKKARSAIDRARSEGTLAASAISAWEIAMLVRNDRLALTMDV 61
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D ++
Sbjct 62 DAWLTTVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYAHVK--TLW 131
>gi|325527437|gb|EGD04779.1| PilT protein domain protein [Burkholderia sp. TJI49]
Length=131
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/132 (40%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AI+ A LA +AIS +E+A L +R+ L + V
Sbjct 2 IVLDTHALVWWVAGDPSLSKKARSAIDRARSEGTLAASAISAWEIAMLVRNDRLALTMDV 61
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D ++
Sbjct 62 DAWLATVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYAHVK--TLW 131
>gi|94266861|ref|ZP_01290520.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93452466|gb|EAT03068.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=131
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/132 (37%), Positives = 80/132 (61%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA--DE-LAVAAISWFELAWLAEQERIQLAIPV 60
++LD+HV WW + P++L+ AS AI+ DE + ++ IS +E+A L + R++LAI
Sbjct 2 IVLDTHVWLWWLSNPEKLTAPASLAIDDGVRDEGIVISTISTWEIALLVSRGRLELAINY 61
Query 61 LSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
W+ + VR + + ++A ++ LP F DPADR+I ATA+ G LVT D+++
Sbjct 62 RDWIAKTEGLPFVRFIPVDNTIALRSIDLPGHFHPDPADRIIVATAMTMGLALVTCDQKM 121
Query 119 RSHRHPRPVTVW 130
R + H + T+W
Sbjct 122 RGYPHLQ--TIW 131
>gi|163847807|ref|YP_001635851.1| PilT domain-containing protein [Chloroflexus aurantiacus J-10-fl]
gi|222525675|ref|YP_002570146.1| PilT protein domain-containing protein [Chloroflexus sp. Y-400-fl]
gi|163669096|gb|ABY35462.1| PilT protein domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222449554|gb|ACM53820.1| PilT protein domain protein [Chloroflexus sp. Y-400-fl]
Length=130
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/124 (34%), Positives = 77/124 (63%), Gaps = 4/124 (3%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADE--LAVAAISWFELAWLAEQERIQLAIPVL 61
++LD+H+ WW +P +L+ A +AI + + + ++AIS +E+A L E +R++L +P+
Sbjct 2 IVLDTHIWIWWVHDPSQLTQAQIEAITNNETELIGISAISCWEVAKLVEYKRLELPLPLE 61
Query 62 SWLQQLAEH--VRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLR 119
W +Q + ++ + +TP +A + LP+ F DPAD++I ATA +G LVT D ++
Sbjct 62 EWFEQALSYPGMQLLALTPEIAIESTRLPTPFHRDPADQIIVATARIYGCPLVTSDEKIL 121
Query 120 SHRH 123
+ H
Sbjct 122 QYPH 125
>gi|126667470|ref|ZP_01738441.1| PilT protein, N-terminal [Marinobacter sp. ELB17]
gi|126628062|gb|EAZ98688.1| PilT protein, N-terminal [Marinobacter sp. ELB17]
Length=133
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/131 (35%), Positives = 73/131 (56%), Gaps = 7/131 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADE-----LAVAAISWFELAWLAEQERIQLAI 58
+++D+H WW +LS+ A AI+H + + V+AIS +E+A L ++R+ L +
Sbjct 2 IVVDTHTLIWWVNGDNQLSLNAKAAIDHEQQCEDGVILVSAISAWEIALLVSRDRLTLGM 61
Query 59 PVLSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
+ WL+ + + VR V + +V + LP F DPADR+I A A LVT D
Sbjct 62 NLDDWLETVGDIDGVRFVPVDTAVGVESTRLPGDFHKDPADRMIVALARHFNVPLVTADE 121
Query 117 RLRSHRHPRPV 127
R+R+++H R V
Sbjct 122 RIRAYKHVRSV 132
>gi|339327404|ref|YP_004687097.1| protein PilT [Cupriavidus necator N-1]
gi|338167561|gb|AEI78616.1| protein PilT [Cupriavidus necator N-1]
Length=131
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/132 (38%), Positives = 78/132 (60%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIE---HADELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW+ LS A AI+ ++ V+AIS +E+A L E+ER+ LA+ V
Sbjct 2 IVLDTHALVWWATGSDELSDPARAAIDRELQDGQIIVSAISAWEVAMLVERERLVLAMDV 61
Query 61 LSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+WL +A+ + V + +A +V LP F DPADR+I ATA + LVT+D ++
Sbjct 62 DTWLATIADIDAISFVPVDTEIATKSVHLPGDFHKDPADRMIVATARKLAVPLVTRDEKI 121
Query 119 RSHRHPRPVTVW 130
R++ H + T+W
Sbjct 122 RAYSHVK--TIW 131
>gi|329913359|ref|ZP_08275920.1| PilT protein domain protein [Oxalobacteraceae bacterium IMCC9480]
gi|327545388|gb|EGF30609.1| PilT protein domain protein [Oxalobacteraceae bacterium IMCC9480]
Length=131
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/131 (39%), Positives = 75/131 (58%), Gaps = 9/131 (6%)
Query 5 LLDSHVAYWWSAEPQRLSMAASQAIEH-----ADELAVAAISWFELAWLAEQERIQLAIP 59
+LD+H WW + LS A + IE ++ V+AIS +E+A L E+ R+ L++
Sbjct 1 MLDTHTLIWWVTGDKMLSDQAKKTIESEMSVPGGQIIVSAISAWEIAMLVEKGRLILSMD 60
Query 60 VLSWLQQLAEHVRTVGITP---SVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
V WL +AE + TV P +VA +V LP F DPADR+I ATA + LVTKD
Sbjct 61 VAGWLDAVAE-IDTVKFWPIDVAVALKSVDLPGEFHKDPADRMIVATARKLAAPLVTKDE 119
Query 117 RLRSHRHPRPV 127
++R++ H + +
Sbjct 120 KIRAYEHVKSI 130
>gi|170078382|ref|YP_001735020.1| PilT domain-containing protein [Synechococcus sp. PCC 7002]
gi|169886051|gb|ACA99764.1| PIN domain protein [Synechococcus sp. PCC 7002]
Length=128
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/114 (37%), Positives = 68/114 (60%), Gaps = 2/114 (1%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSW 63
++LD+HV WW E +LS A+ AI + + +IS +E+A L + R+ ++ V +W
Sbjct 2 IILDTHVWIWWMTESPKLSSPAAAAIAEYSIIGIPSISCWEIAMLVAKNRLTFSMDVQTW 61
Query 64 LQQLAEH--VRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKD 115
L+ EH +R + ++P +A + LP +F DPADRLI AT + + LV+KD
Sbjct 62 LKLSLEHPKIRLLPLSPEIAVLSTRLPKNFHSDPADRLIVATCLTYQTSLVSKD 115
>gi|73538099|ref|YP_298466.1| PilT protein, N-terminal [Ralstonia eutropha JMP134]
gi|72121436|gb|AAZ63622.1| PilT protein, N-terminal [Ralstonia eutropha JMP134]
Length=136
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/132 (36%), Positives = 77/132 (59%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIE---HADELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW++ LS A I + ++ V+AIS +E+A L E+E++ L++ V
Sbjct 7 IVLDTHTLVWWASGSDELSATAKSTIHRECNEGQIVVSAISAWEIAMLVEREKLVLSMDV 66
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
SWL +A E + + V+ +V LP F DPADR+I ATA + L+T+D ++
Sbjct 67 ESWLDTVAQIEAITFYPVDVDVSIKSVQLPGEFHKDPADRMIVATARKLAVPLITRDEKI 126
Query 119 RSHRHPRPVTVW 130
R++ H R T+W
Sbjct 127 RAYEHVR--TIW 136
>gi|153872917|ref|ZP_02001672.1| PilT-like protein [Beggiatoa sp. PS]
gi|152070619|gb|EDN68330.1| PilT-like protein [Beggiatoa sp. PS]
Length=129
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/118 (35%), Positives = 68/118 (58%), Gaps = 3/118 (2%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSW 63
++LD+H+ WW + +L IE A+++ V+AIS FE++WL RI+L P W
Sbjct 2 IILDTHIWLWWINQTSKLKTLWLDHIEQAEQVGVSAISLFEVSWLDRHNRIELPCPRHEW 61
Query 64 LQQ--LAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLR 119
++ + ++ + ITP +A+ AV LP DP DR+I ATA+ H L++ D + +
Sbjct 62 FEKALVGSDIQLIPITPEIASQAVDLPEHH-SDPQDRIIIATALIHNALLLSADSKFK 118
>gi|167584214|ref|ZP_02376602.1| PilT protein domain protein [Burkholderia ubonensis Bu]
Length=151
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/128 (41%), Positives = 73/128 (58%), Gaps = 8/128 (6%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H WW A LS A AIE A LA +AIS +E+A L +R+ L + V
Sbjct 7 IVLDTHALVWWVAGDPSLSKKARSAIERARGEGTLAASAISAWEIAMLVRGDRLALTMDV 66
Query 61 LSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR-- 116
+WL +A + +R V + +AA + ALP +F DPADR+I ATA G LVT+D
Sbjct 67 DAWLATVAQIDGMRFVPVDADIAAKSTALPGTFHKDPADRMIVATARRLGAPLVTRDEKN 126
Query 117 -RLRSHRH 123
R+RS +
Sbjct 127 PRIRSRQD 134
>gi|126666672|ref|ZP_01737649.1| PilT protein, N-terminal [Marinobacter sp. ELB17]
gi|126628717|gb|EAZ99337.1| PilT protein, N-terminal [Marinobacter sp. ELB17]
Length=133
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/131 (36%), Positives = 71/131 (55%), Gaps = 7/131 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADE-----LAVAAISWFELAWLAEQERIQLAI 58
+ LD+H WW +LS A AIEH + + V+AIS +E+A L ++R+ L +
Sbjct 2 IALDTHTLIWWVNGDGQLSPNAKAAIEHEQQNEDGIILVSAISAWEIALLVGRDRLTLGM 61
Query 59 PVLSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
+ WL+ ++E VR V + V + LP F DPADR+I A A LVT D
Sbjct 62 NLDDWLETVSEIEGVRFVPVDEVVGVESTRLPGDFHKDPADRMITALARHFNVPLVTVDE 121
Query 117 RLRSHRHPRPV 127
R+R+++H R +
Sbjct 122 RIRAYKHVRSI 132
>gi|94969663|ref|YP_591711.1| PilT protein-like [Candidatus Koribacter versatilis Ellin345]
gi|94551713|gb|ABF41637.1| PilT protein-like protein [Candidatus Koribacter versatilis Ellin345]
Length=129
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/120 (36%), Positives = 69/120 (58%), Gaps = 3/120 (2%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADEL---AVAAISWFELAWLAEQERIQLAIPV 60
++LD+HVA W + +RLS A+ I+ + ++AI+ E+AWL + R+ A +
Sbjct 2 IVLDTHVALWAAGARERLSAPATLVIDQRGSVEGAGISAITLVEIAWLLRRGRLSYAGTI 61
Query 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
++L++L + IT +AA + P +P DP DRLI ATA+ H LVT DR +R+
Sbjct 62 DAFLEKLTSRYAVLPITREIAALSAQFPPEYPPDPTDRLIGATALFHRAPLVTADRLIRA 121
>gi|194336778|ref|YP_002018572.1| PilT protein domain-containing protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309255|gb|ACF43955.1| PilT protein domain protein [Pelodictyon phaeoclathratiforme
BU-1]
Length=129
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/121 (36%), Positives = 69/121 (58%), Gaps = 4/121 (3%)
Query 4 VLLDSHVAYWW-SAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLS 62
++LD+H+ WW + + L+ + IE+AD +AV+AIS FE+AWL RI L
Sbjct 2 IVLDTHIWLWWVNRDTGNLAQCRIEQIENADIVAVSAISCFEVAWLEHHGRIALPAGKSD 61
Query 63 WLQQL--AEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
W ++ ++ + +TP ++ TAV L S DP DR+I ATA+ H L++ DR+
Sbjct 62 WFEKALDGSGIKLLPVTPEISCTAVEL-SEHHSDPQDRIIIATALVHNASLMSSDRKFSG 120
Query 121 H 121
+
Sbjct 121 Y 121
>gi|78188638|ref|YP_378976.1| hypothetical protein Cag_0660 [Chlorobium chlorochromatii CaD3]
gi|78170837|gb|ABB27933.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length=129
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/121 (35%), Positives = 67/121 (56%), Gaps = 4/121 (3%)
Query 4 VLLDSHVAYWW-SAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLS 62
++LD+H+ WW + + ++L + I +D +AV+AIS FE+AWL RI L I
Sbjct 2 IILDTHIWLWWVNGDTEKLDQRRLEQITSSDIVAVSAISSFEVAWLVHHGRIVLPIGARD 61
Query 63 WLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRS 120
W + + + + ITP +A AV LP DP DR+I ATA+ + L++ DR+
Sbjct 62 WFDKALDGSGIHLIPITPEIACKAVELPDHH-SDPQDRIIIATALVNNASLMSSDRKFSC 120
Query 121 H 121
+
Sbjct 121 Y 121
>gi|94265591|ref|ZP_01289336.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|94272822|ref|ZP_01292191.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93450003|gb|EAT01397.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93453920|gb|EAT04275.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=136
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/121 (41%), Positives = 70/121 (58%), Gaps = 5/121 (4%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
+LLD+HV W Q L A + I A D+L VA +S++E+A L E++RI + + V
Sbjct 5 LLLDTHVLVWLDEGGQWLGKNALRTINKALANDQLGVATVSFWEVAMLVEKKRITMQLEV 64
Query 61 LSW-LQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLR 119
W L+ L + V + +V+ A LP F GDPADR+I ATAIE G L+T D ++
Sbjct 65 TEWRLELLQAGLLEVPLEGAVSIRAAQLPL-FHGDPADRIIVATAIEAGATLMTADEKIL 123
Query 120 S 120
S
Sbjct 124 S 124
>gi|67459093|ref|YP_246717.1| toxin of toxin-antitoxin system [Rickettsia felis URRWXCal2]
gi|67004626|gb|AAY61552.1| Toxin of toxin-antitoxin system [Rickettsia felis URRWXCal2]
Length=141
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/124 (36%), Positives = 71/124 (58%), Gaps = 5/124 (4%)
Query 2 TTVLLDSHVAYWWSAEPQRLSMAASQAIEHADE---LAVAAISWFELAWLAEQERIQLAI 58
+ ++LD+HV W +P+ LS I A E L +++IS +E+A L ++RI +
Sbjct 6 SGLVLDTHVLLWSILQPEELSEQIKHKINLAQENSQLFLSSISLWEIAMLNFKKRINVYE 65
Query 59 PVLSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
P+ +L + + I+P VAA +V+L F GDPADR+I ATA G L+T+D+
Sbjct 66 PIKDFLNSITNINGLSIKDISPEVAAESVSLMDDFHGDPADRIIVATAKCLGATLLTRDQ 125
Query 117 RLRS 120
++ S
Sbjct 126 KILS 129
>gi|94264667|ref|ZP_01288449.1| PilT protein-like [delta proteobacterium MLMS-1]
gi|93454898|gb|EAT05142.1| PilT protein-like [delta proteobacterium MLMS-1]
Length=135
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/128 (38%), Positives = 69/128 (54%), Gaps = 6/128 (4%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEH----ADELAVAAISWFELAWLAEQERIQL 56
M LLD+HV WW L QA+++ A++AIS +E LA + R+++
Sbjct 1 MNLPLLDTHVWLWWLLGQPELDENERQALDNMAAAGTPPALSAISLWEAQMLAAKGRLEV 60
Query 57 AIPVLSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTK 114
P+ WL A E + + + +V T ALP SF GDPADR+I ATA+ HG L T+
Sbjct 61 DTPLTHWLPTAAAPEAITLLPMDVAVILTLDALPPSFHGDPADRIIVATAMAHGLPLATR 120
Query 115 DRRLRSHR 122
D+ +R R
Sbjct 121 DKNIRRLR 128
>gi|87125279|ref|ZP_01081125.1| hypothetical protein RS9917_07675 [Synechococcus sp. RS9917]
gi|86167048|gb|EAQ68309.1| hypothetical protein RS9917_07675 [Synechococcus sp. RS9917]
Length=133
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/123 (42%), Positives = 76/123 (62%), Gaps = 10/123 (8%)
Query 5 LLDSHVAYWWSAEPQRLSMAASQAIE---HADELAVAAISWFELAWLAEQERIQLAIPVL 61
+ D+H+ +W+ EP RLS A QA+E + +LA+A IS +ELA L E+ R+ L V
Sbjct 4 ICDTHILLFWAHEPHRLSPPARQALELGRNKKQLAIADISLWELALLHERGRLVLPADVS 63
Query 62 S--WLQQLAEHVR--TVGITPSVAATAVALPSSFP-GDPADRLIYATAIEHGWRLVTKDR 116
+ +++QL +R + ITP +A + + F GDPADRLI ATA++ G RL+T D
Sbjct 64 ADFYVRQLLSALRLEVLPITPEIALLSRS--DLFQHGDPADRLIGATALQLGSRLITADA 121
Query 117 RLR 119
+LR
Sbjct 122 KLR 124
>gi|126656422|ref|ZP_01727683.1| hypothetical protein CY0110_22002 [Cyanothece sp. CCY0110]
gi|126622108|gb|EAZ92815.1| hypothetical protein CY0110_22002 [Cyanothece sp. CCY0110]
Length=131
Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/128 (32%), Positives = 69/128 (54%), Gaps = 4/128 (3%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAI--EHADELAVAAISWFELAWLAEQERIQLAIPVL 61
++LD+H+ WW+ RL+ + I E L + +IS E++ L ++ + L +
Sbjct 2 IILDTHIFVWWNHNDSRLTNYYQEIINRERPQGLGICSISLIEISRLVNKKTLILPCSIQ 61
Query 62 SWLQ-QLAEH-VRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLR 119
W + LA+ V+ + ITP +A A LP F DPADRLI ATA + L+T D ++
Sbjct 62 EWFKIALAQKGVQLLSITPDIAIDAYTLPGDFHKDPADRLIVATARIYNVSLLTVDNKIL 121
Query 120 SHRHPRPV 127
++ + + +
Sbjct 122 AYPYVKTI 129
>gi|189501136|ref|YP_001960606.1| PilT protein domain-containing protein [Chlorobium phaeobacteroides
BS1]
gi|189496577|gb|ACE05125.1| PilT protein domain protein [Chlorobium phaeobacteroides BS1]
Length=131
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/121 (33%), Positives = 68/121 (57%), Gaps = 5/121 (4%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
+ +D+HV W + +P+ LS A +A+ A D + +IS +E+A L ++RI++++P
Sbjct 2 ITVDTHVILWDALKPEMLSGKAKRALAEANRTDGIFFCSISLWEIAMLIRKKRIEISVPY 61
Query 61 LSWLQQLAEHVRTV--GITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
++ L R ITP +A + LP + GDPADR+I ++++ L+T D L
Sbjct 62 RDFVDLLLSSNRYFFQEITPEIAYLSTTLPDTINGDPADRIIASSSLITKTSLITADENL 121
Query 119 R 119
R
Sbjct 122 R 122
>gi|170077037|ref|YP_001733675.1| hypothetical protein SYNPCC7002_A0409 [Synechococcus sp. PCC
7002]
gi|169884706|gb|ACA98419.1| conserved hypothetical protein, PIN domain [Synechococcus sp.
PCC 7002]
Length=129
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/118 (37%), Positives = 63/118 (54%), Gaps = 4/118 (3%)
Query 4 VLLDSHVAYWW-SAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLS 62
+++D+H+ WW + RL Q +E LAV+AIS FE+AWL +RI L +
Sbjct 2 IVMDTHIWLWWVNGNLDRLGSKRVQLLEQPKPLAVSAISCFEVAWLDHHQRIILPHKKTA 61
Query 63 WLQQL--AEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
W + + + ITP +A AV LP DP DRLI ATAI + L++ D++
Sbjct 62 WFDKALGGSDILLLPITPKIAEIAVTLPEHH-RDPQDRLIIATAIFYDAYLMSADQKF 118
>gi|87123489|ref|ZP_01079340.1| PilT protein, N-terminal [Synechococcus sp. RS9917]
gi|86169209|gb|EAQ70465.1| PilT protein, N-terminal [Synechococcus sp. RS9917]
Length=130
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/126 (39%), Positives = 74/126 (59%), Gaps = 4/126 (3%)
Query 4 VLLDSHVAYWW-SAEPQRLSMAASQAIEHA-DELAVAAISWFELAWLAEQERIQLAIPVL 61
+LLD+HV WW + E RLS AA AIE + V+AIS +E+A L E+ R+ L + +
Sbjct 2 ILLDTHVLIWWANGEHDRLSAAAIAAIEAEEQQRLVSAISCWEVAMLVERGRLGLNVDME 61
Query 62 SWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLR 119
WL +A ++ + ++P+VA + LP +F DPADR + A A LVT D ++R
Sbjct 62 RWLNLVASVPRLKLLPLSPAVAVASTRLPRTFHADPADRFLVAQARHLNIALVTADSKIR 121
Query 120 SHRHPR 125
++ H R
Sbjct 122 AYPHVR 127
>gi|148264444|ref|YP_001231150.1| PilT domain-containing protein [Geobacter uraniireducens Rf4]
gi|146397944|gb|ABQ26577.1| PilT protein domain protein [Geobacter uraniireducens Rf4]
Length=132
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/129 (36%), Positives = 69/129 (54%), Gaps = 5/129 (3%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADE---LAVAAISWFELAWLAEQERIQLAIPV 60
++LD+ + + P LS A +AI DE LA + IS +E+A L + R+
Sbjct 3 LVLDTCALIYDALSPNSLSRKAVKAITKGDEDGLLACSDISLWEIAMLISKGRLDPGTDA 62
Query 61 LSWLQQL--AEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+++L+ L A +R ITP +AAT+ + GDPADR+I ATAI H LVT D L
Sbjct 63 VTFLRLLHSARQIRVFPITPEIAATSASSSLFVHGDPADRIIAATAIVHKAELVTCDGHL 122
Query 119 RSHRHPRPV 127
+ + R +
Sbjct 123 SAVKGLRVI 131
>gi|339481715|ref|YP_004693501.1| PilT protein domain-containing protein [Nitrosomonas sp. Is79A3]
gi|338803860|gb|AEJ00102.1| PilT protein domain protein [Nitrosomonas sp. Is79A3]
Length=133
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/128 (36%), Positives = 76/128 (60%), Gaps = 16/128 (12%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++ D+H+ +W+ +RL++ A QA+EH +LA AAIS++E+A L + R L +P
Sbjct 3 IICDTHILLFWADCRERLTITAQQAVEHGLTDGKLACAAISFWEIALLFRKNR--LVLPA 60
Query 61 ----LSWLQQ--LAEHVRTVGITPSVAATAVA--LPSSFPGDPADRLIYATAIEHGWRLV 112
S++ ++ ++ + ITP++AA A + +P DP DRLI ATAI H L+
Sbjct 61 QHTSASYMDDIVMSLELQILSITPAIAALAESGIIPHD---DPGDRLIAATAIAHQAPLI 117
Query 113 TKDRRLRS 120
T D++L S
Sbjct 118 TADKKLHS 125
>gi|91205796|ref|YP_538151.1| toxin of toxin-antitoxin (TA) system [Rickettsia bellii RML369-C]
gi|157827076|ref|YP_001496140.1| toxin of toxin-antitoxin (TA) system [Rickettsia bellii OSU 85-389]
gi|91069340|gb|ABE05062.1| Toxin of toxin-antitoxin (TA) system [Rickettsia bellii RML369-C]
gi|157802380|gb|ABV79103.1| Toxin of toxin-antitoxin (TA) system [Rickettsia bellii OSU 85-389]
Length=138
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/120 (34%), Positives = 70/120 (59%), Gaps = 5/120 (4%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADE---LAVAAISWFELAWLAEQERIQLAIPV 60
++LD+HV W +P+ LS I A E L +++IS +E+A L+ ++RI + P+
Sbjct 5 LVLDTHVLLWSLLQPKELSEEIKHKINLAQENSQLFLSSISLWEIAMLSFKKRICIYEPI 64
Query 61 LSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
+L + + + I+ +AA +++L F GDPADR+I ATA G L+T+D+++
Sbjct 65 KDFLNSITDINGLAIKDISSEIAAESISLMDDFHGDPADRIIVATAKCLGATLLTRDQKI 124
>gi|110598259|ref|ZP_01386535.1| PilT protein-like [Chlorobium ferrooxidans DSM 13031]
gi|110340174|gb|EAT58673.1| PilT protein-like [Chlorobium ferrooxidans DSM 13031]
Length=137
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/132 (35%), Positives = 74/132 (57%), Gaps = 7/132 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQER--IQLAI 58
+ +D+H+ W + +P+ LS A A++ A D + +IS +E+A L +++R I L+
Sbjct 8 ITVDTHIILWDALQPELLSNKAKSALQKANDSDGILFCSISLWEIAMLMKKKRVEIDLSY 67
Query 59 PVLSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
L L + A + ITP +A +V LP++ DPADR+I A+++ LVT DR L
Sbjct 68 SELIDLLKAANNYVFQEITPQIAQLSVTLPATINSDPADRIISASSLVTKTPLVTADRNL 127
Query 119 RSHRHPRPVTVW 130
R+ P T+W
Sbjct 128 RA--APMLHTIW 137
>gi|153868981|ref|ZP_01998692.1| PilT-like protein [Beggiatoa sp. PS]
gi|152074448|gb|EDN71301.1| PilT-like protein [Beggiatoa sp. PS]
Length=130
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (36%), Positives = 68/114 (60%), Gaps = 3/114 (2%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSW 63
+LLD+H+ W + L + + IE A+ + V+AIS +E+ L +++RI+L +PV W
Sbjct 2 ILLDTHIWLRWLLPTEPLPIKLVEQIEQAEIVTVSAISCWEVVMLVQKQRIELPLPVEQW 61
Query 64 LQQ--LAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKD 115
L++ A V + IT ++ A LP+ DPADR+I ATA+ H +L++ D
Sbjct 62 LKEATTASGVDVLPITCDISYLAGTLPTHH-KDPADRIIIATALCHHLKLMSLD 114
>gi|78189258|ref|YP_379596.1| hypothetical protein Cag_1292 [Chlorobium chlorochromatii CaD3]
gi|78171457|gb|ABB28553.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length=135
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/121 (34%), Positives = 66/121 (55%), Gaps = 4/121 (3%)
Query 1 MTTVLLDSHVAYWW-SAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIP 59
+T +++DSHV +WW + E QRLS I A+ + V+ +S FELA ++ R+ L +P
Sbjct 4 LTMIVMDSHVWFWWINLEHQRLSGIILDTIATANRIGVSPVSCFELALAHKKGRLNLPLP 63
Query 60 VLSWLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRR 117
+ W + + V + +A AV L S+ DP DR+I ATA++ +L + D R
Sbjct 64 LDKWFRFALDGSDVELLPFDEKIATRAVKL-SNIHHDPFDRIIIATALQLNGKLASVDNR 122
Query 118 L 118
Sbjct 123 F 123
>gi|297570563|ref|YP_003691907.1| PilT protein domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296926478|gb|ADH87288.1| PilT protein domain protein [Desulfurivibrio alkaliphilus AHT2]
Length=135
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/131 (40%), Positives = 70/131 (54%), Gaps = 12/131 (9%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELA-------VAAISWFELAWLAEQER 53
MT LLD+HV WW L MAA + + D LA +A+IS +E LA + R
Sbjct 1 MTPPLLDTHVWLWWLLGQPEL-MAAER--DSLDALASAGTPPTLASISLWEAQMLAAKGR 57
Query 54 IQLAIPVLSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRL 111
+ L +P+ WL A E V + + +V T LP +F GDPADR+I ATA HG L
Sbjct 58 LSLDMPLDRWLPVAAAPETVTLLPMDVAVILTLDRLPETFHGDPADRIIVATAQAHGLPL 117
Query 112 VTKDRRLRSHR 122
T+D+ +R R
Sbjct 118 ATRDKNIRRSR 128
>gi|46255168|ref|YP_006080.1| hypothetical protein TT_P0097 [Thermus thermophilus HB27]
gi|46198017|gb|AAS82427.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length=134
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/128 (37%), Positives = 72/128 (57%), Gaps = 8/128 (6%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H W+ A P+ L + ++ A + L ++AI+ +E+A LA++ RI ++
Sbjct 5 LVLDTHAWVWYLASPEVLPKGLVRVLDEARAREALYISAITPWEVAVLAQKGRIAFSLEP 64
Query 61 LSWLQQLAEHVRTVGITP---SVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRR 117
WL++ A VR +G+ P +A A L P DPADR I ATA+ G LVTKD R
Sbjct 65 RRWLEE-ALRVRGIGVVPLDAGIALEAAHLDLPHP-DPADRFILATALRLGAVLVTKDER 122
Query 118 LRSHRHPR 125
LR + R
Sbjct 123 LRRYAKAR 130
>gi|308274938|emb|CBX31537.1| hypothetical protein N47_E50490 [uncultured Desulfobacterium
sp.]
Length=130
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/123 (35%), Positives = 69/123 (57%), Gaps = 5/123 (4%)
Query 4 VLLDSHVAYWWSAEPQRL-SMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLS 62
++LD+H+ WW E L + I+ D +AV+AIS FE+AWL RI+L S
Sbjct 2 IILDTHIWLWWVNENIDLIGQVRNDLIQSTDIVAVSAISCFEVAWLDAHGRIELPCSRTS 61
Query 63 WLQQLAE--HVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEH-GWRLVTKDRRLR 119
W ++ E + + ITP++A+ AV LP DP DR+I A+A+ + +L++ D +
Sbjct 62 WFEKALEGSGINLLPITPAIASIAVDLPEHH-SDPQDRIIIASALSYDDAQLMSADGKFP 120
Query 120 SHR 122
++
Sbjct 121 RYK 123
>gi|329847163|ref|ZP_08262191.1| PIN domain protein [Asticcacaulis biprosthecum C19]
gi|328842226|gb|EGF91795.1| PIN domain protein [Asticcacaulis biprosthecum C19]
Length=138
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/126 (35%), Positives = 66/126 (53%), Gaps = 5/126 (3%)
Query 1 MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLA 57
M+ VLLD+HV W RLS I+ A DEL + AI+ +E+A L + R+ L
Sbjct 1 MSFVLLDTHVLVWLMQGIDRLSPTKRDLIQKAADRDELGIVAITPWEIAMLTAKGRLALP 60
Query 58 IPVLSWLQQLAEH--VRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKD 115
+ V W+ + V V ++P ++ + LP F DPADR+I A+A LVT+D
Sbjct 61 MDVGDWIDAAVKGFGVAVVPLSPEISVASNRLPGDFHADPADRMIVASARHLNALLVTED 120
Query 116 RRLRSH 121
+ ++
Sbjct 121 NAILAY 126
>gi|333982413|ref|YP_004511623.1| PilT protein domain-containing protein [Methylomonas methanica
MC09]
gi|333806454|gb|AEF99123.1| PilT protein domain protein [Methylomonas methanica MC09]
Length=133
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/134 (38%), Positives = 76/134 (57%), Gaps = 12/134 (8%)
Query 5 LLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLA---I 58
+ D+HV +W+ RLS AA QA++ LA AAIS++E+A L + R+ L
Sbjct 4 ICDTHVLLFWADRRDRLSRAAQQALDDGLAQGNLACAAISFWEIAMLFRKGRLVLPAGYT 63
Query 59 PVLSWLQQL--AEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
PV S+++ + A ++ + +TP +AA A + GDP DR+I ATAI H L+T D
Sbjct 64 PV-SYMEDIVNALNLNILQLTPPIAALAES-GIVVHGDPGDRIIAATAIIHQAPLITADE 121
Query 117 RLRSHRHPRPVTVW 130
+LR+ P + VW
Sbjct 122 KLRA--LPGLMCVW 133
>gi|333967826|gb|AEG34590.1| PilT protein domain protein [Thermus thermophilus SG0.5JP17-16]
Length=134
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/128 (37%), Positives = 72/128 (57%), Gaps = 8/128 (6%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEHA---DELAVAAISWFELAWLAEQERIQLAIPV 60
++LD+H W+ A P+ L + ++ A + L ++AI+ +E+A LA++ RI ++
Sbjct 5 LVLDTHAWVWYLASPKVLPKGLVRILDEARAREALHISAITPWEVAVLAQKGRIAFSLEP 64
Query 61 LSWLQQLAEHVRTVGITP---SVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRR 117
WL++ A VR +G+ P +A A L P DPADR I ATA+ G LVTKD R
Sbjct 65 RRWLEE-ALRVRGIGVVPLDAGIALEAAHLDLPHP-DPADRFILATALRLGAVLVTKDER 122
Query 118 LRSHRHPR 125
LR + R
Sbjct 123 LRRYAKAR 130
>gi|158339786|ref|YP_001520793.1| PilT domain-containing protein [Acaryochloris marina MBIC11017]
gi|158310027|gb|ABW31643.1| PIN domain protein [Acaryochloris marina MBIC11017]
Length=140
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/124 (36%), Positives = 70/124 (57%), Gaps = 6/124 (4%)
Query 4 VLLDSHVAYWW-SAEPQRLSMAASQAIEHADE---LAVAAISWFELAWLAEQERIQLAIP 59
++LD+H+ W + RLS AIE A + L V+AIS +E+ L + R++L+
Sbjct 6 LVLDTHIWIWLLNGNIGRLSSEGLSAIEKASQSAQLGVSAISVWEVGMLESKGRLRLSKG 65
Query 60 VLSWLQQL--AEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRR 117
L W+++ A +R + +TP +A + LP GDPADR++ ATA LVT+D +
Sbjct 66 CLDWVREALSAPGLRLLPLTPEIAIESSRLPGQIHGDPADRILAATARILNGTLVTQDLK 125
Query 118 LRSH 121
L S+
Sbjct 126 LLSY 129
>gi|116621525|ref|YP_823681.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116224687|gb|ABJ83396.1| PilT protein domain protein [Candidatus Solibacter usitatus Ellin6076]
Length=132
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/118 (35%), Positives = 61/118 (52%), Gaps = 5/118 (4%)
Query 5 LLDSHVAYWWSAEPQRLSMAASQAIE----HADELAVAAISWFELAWLAEQERIQLAIPV 60
LLD+H+ W +EP++LS +A+E + + V+ S E+A L E+ RI +
Sbjct 6 LLDTHILIRWLSEPKKLSREQFRALEDVVRRGEYVCVSGFSLLEIALLGERRRITAGLNE 65
Query 61 LSWLQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
L +R + +T V AL + DPADR+I ATA H RLVT D+R+
Sbjct 66 LFHELDTNPSIRILSLTTDVVREVSALGDALR-DPADRVIVATARIHRLRLVTADQRI 122
>gi|17228248|ref|NP_484796.1| hypothetical protein all0753 [Nostoc sp. PCC 7120]
gi|17130098|dbj|BAB72710.1| all0753 [Nostoc sp. PCC 7120]
Length=131
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (53%), Gaps = 5/130 (3%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAI---EHADELAVAAISWFELAWLAEQERIQLAIPV 60
+LLD+H+ WW P++LS + + E+ + L V+AIS +E+A ++ L +P+
Sbjct 2 ILLDTHIWLWWLHSPEQLSESGRTLLTIGENQNALIVSAISVWEIAIKHSNGKLPLPLPI 61
Query 61 LSW--LQQLAEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRL 118
W L + + + P A T+ LP F DPADR+I A A L+T D+++
Sbjct 62 NEWFALAKTRPGITIEPLDPLDAITSTQLPGDFHKDPADRIIVAIAYRRNIELMTCDQKV 121
Query 119 RSHRHPRPVT 128
++ H + +
Sbjct 122 LNYPHIKTIC 131
>gi|297570579|ref|YP_003691923.1| PilT protein domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296926494|gb|ADH87304.1| PilT protein domain protein [Desulfurivibrio alkaliphilus AHT2]
Length=134
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/127 (40%), Positives = 68/127 (54%), Gaps = 12/127 (9%)
Query 5 LLDSHVAYWWSAEPQRLSMAASQAIEHADELA-------VAAISWFELAWLAEQERIQLA 57
LLD+HV WW L MAA + + D LA +A+IS +E LA + R+ L
Sbjct 4 LLDTHVWLWWLLGQPEL-MAAER--DSLDALASAGTPPTLASISLWEAQMLAAKGRLSLD 60
Query 58 IPVLSWLQQLA--EHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKD 115
+P+ WL A E V + + +V T LP +F GDPADR+I ATA HG L T+D
Sbjct 61 MPLDRWLPVAAAPETVTLLPMDVAVILTLDRLPETFHGDPADRIIVATAQAHGLPLATRD 120
Query 116 RRLRSHR 122
+ +R R
Sbjct 121 KNIRRSR 127
>gi|288958344|ref|YP_003448685.1| pilT protein domain-containing protein [Azospirillum sp. B510]
gi|288910652|dbj|BAI72141.1| pilT protein domain protein [Azospirillum sp. B510]
Length=135
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/118 (38%), Positives = 66/118 (56%), Gaps = 6/118 (5%)
Query 4 VLLDSHVAYWWSAEPQRLSMAASQAIEH---ADELAVAAISWFELAWLAEQERIQLAIPV 60
+LLD+H W A + LS A + IE A L V+ +S +E+ L + RI+L +
Sbjct 2 ILLDTHAILWLDAGIE-LSSLARERIEGERLAGGLLVSTVSAWEIGTLVRKGRIRLDLEP 60
Query 61 LSWLQQL--AEHVRTVGITPSVAATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDR 116
+W+Q+ A +R + ++ A A +LP GDPADRL+ ATA E G L+T+DR
Sbjct 61 AAWMQRFLAAAGLRCLPLSLDAALGASSLPEPLHGDPADRLLIATARELGVPLMTRDR 118
Lambda K H
0.321 0.129 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127765705240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40