BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2835c Length=303 Score E Sequences producing significant alignments: (Bits) Value gi|15609972|ref|NP_217351.1| sn-glycerol-3-phosphate transport i... 600 7e-170 gi|340627828|ref|YP_004746280.1| putative Sn-glycerol-3-phosphat... 600 1e-169 gi|289444386|ref|ZP_06434130.1| sn-glycerol-3-phosphate transpor... 600 1e-169 gi|308405988|ref|ZP_07669484.1| sn-glycerol-3-phosphate transpor... 599 2e-169 gi|254232930|ref|ZP_04926257.1| sn-glycerol-3-phosphate transpor... 598 3e-169 gi|298526304|ref|ZP_07013713.1| sn-glycerol-3-phosphate transpor... 597 5e-169 gi|289746634|ref|ZP_06506012.1| sugar ABC transporter [Mycobacte... 597 6e-169 gi|339632844|ref|YP_004724486.1| Sn-glycerol-3-phosphate transpo... 597 6e-169 gi|323718562|gb|EGB27731.1| sn-glycerol-3-phosphate transport me... 569 2e-160 gi|308232259|ref|ZP_07415455.2| sn-glycerol-3-phosphate transpor... 554 6e-156 gi|240171290|ref|ZP_04749949.1| putative sn-glycerol-3-phosphate... 498 6e-139 gi|118617686|ref|YP_906018.1| SN-glycerol-3-phosphate transport ... 470 1e-130 gi|226308455|ref|YP_002768415.1| ABC transporter permease protei... 433 2e-119 gi|229489197|ref|ZP_04383063.1| ABC sugar transporter, permease ... 432 4e-119 gi|111022081|ref|YP_705053.1| sugar ABC transporter permease [Rh... 420 1e-115 gi|343927708|ref|ZP_08767176.1| putative ABC transporter permeas... 414 8e-114 gi|25028070|ref|NP_738124.1| putative ABC transporter permease p... 398 6e-109 gi|319947669|ref|ZP_08021887.1| putative ABC transporter permeas... 388 7e-106 gi|309811154|ref|ZP_07704950.1| ABC transporter, permease protei... 378 6e-103 gi|227488068|ref|ZP_03918384.1| sugar ABC superfamily ATP bindin... 373 2e-101 gi|334564201|ref|ZP_08517192.1| putative ABC transporter permeas... 367 2e-99 gi|62390268|ref|YP_225670.1| sn-glycerol-3-phosphate transport s... 363 2e-98 gi|296141204|ref|YP_003648447.1| binding-protein-dependent trans... 361 6e-98 gi|23308847|ref|NP_600602.2| ABC-type transporter, permease comp... 361 6e-98 gi|31794011|ref|NP_856504.1| sn-glycerol-3-phosphate ABC transpo... 358 5e-97 gi|227547721|ref|ZP_03977770.1| sugar ABC superfamily ATP bindin... 355 5e-96 gi|311739851|ref|ZP_07713685.1| sn-Glycerol-3-phosphate ABC supe... 349 4e-94 gi|255323851|ref|ZP_05364977.1| ABC-type transporter, permease c... 348 6e-94 gi|344043412|gb|EGV39105.1| hypothetical protein CgS9114_14537 [... 343 2e-92 gi|227496130|ref|ZP_03926436.1| sugar ABC superfamily ATP bindin... 331 9e-89 gi|237786224|ref|YP_002906929.1| sn-glycerol-3-phosphate transpo... 328 6e-88 gi|152964265|ref|YP_001360049.1| ABC transporter inner membrane ... 286 2e-75 gi|269795190|ref|YP_003314645.1| carbohydrate ABC transporter me... 273 3e-71 gi|297627492|ref|YP_003689255.1| Binding-protein-dependent trans... 269 4e-70 gi|289571023|ref|ZP_06451250.1| sn-glycerol-3-phosphate transpor... 268 9e-70 gi|148273424|ref|YP_001222985.1| putative glycerol ABC transport... 263 2e-68 gi|170782751|ref|YP_001711085.1| putative integral membrane tran... 261 8e-68 gi|229819393|ref|YP_002880919.1| binding-protein-dependent trans... 259 3e-67 gi|297154516|gb|ADI04228.1| binding-protein-dependent transport ... 259 5e-67 gi|269839321|ref|YP_003324013.1| binding-protein-dependent trans... 249 3e-64 gi|116671492|ref|YP_832425.1| binding-protein-dependent transpor... 242 6e-62 gi|256833454|ref|YP_003162181.1| binding-protein-dependent trans... 239 4e-61 gi|119960992|ref|YP_948633.1| sn-glycerol-3-phosphate transport ... 238 1e-60 gi|163840864|ref|YP_001625269.1| SN-glycerol-3-phosphate transpo... 236 2e-60 gi|220913406|ref|YP_002488715.1| sn-glycerol-3-phosphate ABC tra... 236 4e-60 gi|257070085|ref|YP_003156340.1| carbohydrate ABC transporter me... 235 5e-60 gi|229820021|ref|YP_002881547.1| binding-protein-dependent trans... 225 7e-57 gi|221635672|ref|YP_002523548.1| sn-glycerol-3-phosphate transpo... 223 3e-56 gi|229819998|ref|YP_002881524.1| binding-protein-dependent trans... 223 4e-56 gi|163846844|ref|YP_001634888.1| binding-protein-dependent trans... 221 9e-56 >gi|15609972|ref|NP_217351.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPA [Mycobacterium tuberculosis H37Rv] gi|15842376|ref|NP_337413.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis CDC1551] gi|121638715|ref|YP_978939.1| putative sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium bovis BCG str. Pasteur 1173P2] 33 more sequence titles Length=303 Score = 600 bits (1548), Expect = 7e-170, Method: Compositional matrix adjust. Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF Sbjct 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 Query 301 QRQ 303 QRQ Sbjct 301 QRQ 303 >gi|340627828|ref|YP_004746280.1| putative Sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPA [Mycobacterium canettii CIPT 140010059] gi|340006018|emb|CCC45188.1| putative Sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPA [Mycobacterium canettii CIPT 140010059] Length=303 Score = 600 bits (1546), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 301/303 (99%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWN+SDPSAR Sbjct 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNISDPSAR 60 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAV+GSMVLGLALAMLLDRPLRGRNLVRSTVF Sbjct 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVIGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 Query 301 QRQ 303 QRQ Sbjct 301 QRQ 303 >gi|289444386|ref|ZP_06434130.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis T46] gi|289751495|ref|ZP_06510873.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis T92] gi|289417305|gb|EFD14545.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis T46] gi|289692082|gb|EFD59511.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis T92] Length=303 Score = 600 bits (1546), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 302/303 (99%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF Sbjct 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTY+QVRVMDRG Sbjct 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYHQVRVMDRG 300 Query 301 QRQ 303 QRQ Sbjct 301 QRQ 303 >gi|308405988|ref|ZP_07669484.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis SUMu012] gi|308364930|gb|EFP53781.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis SUMu012] Length=347 Score = 599 bits (1544), Expect = 2e-169, Method: Compositional matrix adjust. Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 45 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 104 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF Sbjct 105 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 164 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 165 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 224 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 225 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 284 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 285 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 344 Query 301 QRQ 303 QRQ Sbjct 345 QRQ 347 >gi|254232930|ref|ZP_04926257.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium tuberculosis C] gi|254365482|ref|ZP_04981527.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium tuberculosis str. Haarlem] gi|124601989|gb|EAY60999.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium tuberculosis C] gi|134150995|gb|EBA43040.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium tuberculosis str. Haarlem] Length=340 Score = 598 bits (1543), Expect = 3e-169, Method: Compositional matrix adjust. Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 38 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 97 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF Sbjct 98 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 157 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 158 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 217 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 218 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 277 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 278 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 337 Query 301 QRQ 303 QRQ Sbjct 338 QRQ 340 >gi|298526304|ref|ZP_07013713.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium tuberculosis 94_M4241A] gi|298496098|gb|EFI31392.1| sn-glycerol-3-phosphate transport integral membrane protein ABC transporter ugpA [Mycobacterium tuberculosis 94_M4241A] Length=303 Score = 597 bits (1540), Expect = 5e-169, Method: Compositional matrix adjust. Identities = 302/303 (99%), Positives = 302/303 (99%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLD PLRGRNLVRSTVF Sbjct 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDGPLRGRNLVRSTVF 120 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 Query 301 QRQ 303 QRQ Sbjct 301 QRQ 303 >gi|289746634|ref|ZP_06506012.1| sugar ABC transporter [Mycobacterium tuberculosis 02_1987] gi|289687162|gb|EFD54650.1| sugar ABC transporter [Mycobacterium tuberculosis 02_1987] Length=303 Score = 597 bits (1540), Expect = 6e-169, Method: Compositional matrix adjust. Identities = 302/303 (99%), Positives = 302/303 (99%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF Sbjct 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVF RVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFLRVLLPQLRPTTFFLSITVLINSLQVFD 240 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 Query 301 QRQ 303 QRQ Sbjct 301 QRQ 303 >gi|339632844|ref|YP_004724486.1| Sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPA [Mycobacterium africanum GM041182] gi|339332200|emb|CCC27910.1| putative Sn-glycerol-3-phosphate transport integral membrane protein ABC transporter UGPA [Mycobacterium africanum GM041182] Length=303 Score = 597 bits (1540), Expect = 6e-169, Method: Compositional matrix adjust. Identities = 302/303 (99%), Positives = 302/303 (99%), Gaps = 0/303 (0%) Query 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR Sbjct 1 MAAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR 60 Query 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVF 120 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRP RGRNLVRSTVF Sbjct 61 FVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPWRGRNLVRSTVF 120 Query 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG Sbjct 121 APFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLG 180 Query 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD Sbjct 181 YTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFD 240 Query 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG Sbjct 241 VINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRG 300 Query 301 QRQ 303 QRQ Sbjct 301 QRQ 303 >gi|323718562|gb|EGB27731.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis CDC1551A] gi|339295675|gb|AEJ47786.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis CCDC5079] gi|339299291|gb|AEJ51401.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis CCDC5180] Length=288 Score = 569 bits (1466), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 287/288 (99%), Positives = 288/288 (100%), Gaps = 0/288 (0%) Query 16 VRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSD 75 +RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSD Sbjct 1 MRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSD 60 Query 76 TRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQ 135 TRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQ Sbjct 61 TRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQ 120 Query 136 FVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRR 195 FVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRR Sbjct 121 FVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRR 180 Query 196 DLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGT 255 DLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGT Sbjct 181 DLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGT 240 Query 256 TTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 TTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ Sbjct 241 TTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 288 >gi|308232259|ref|ZP_07415455.2| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis SUMu001] gi|308369875|ref|ZP_07419362.2| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis SUMu002] gi|308371150|ref|ZP_07423984.2| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis SUMu003] 19 more sequence titles Length=280 Score = 554 bits (1428), Expect = 6e-156, Method: Compositional matrix adjust. Identities = 279/280 (99%), Positives = 280/280 (100%), Gaps = 0/280 (0%) Query 24 VLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNT 83 +LVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNT Sbjct 1 MLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNT 60 Query 84 AVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFG 143 AVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFG Sbjct 61 AVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFG 120 Query 144 LIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEI 203 LIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEI Sbjct 121 LIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEI 180 Query 204 DGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVY 263 DGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVY Sbjct 181 DGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVY 240 Query 264 VETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 VETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ Sbjct 241 VETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 280 >gi|240171290|ref|ZP_04749949.1| putative sn-glycerol-3-phosphate transport integral membrane protein ABC transporter [Mycobacterium kansasii ATCC 12478] Length=303 Score = 498 bits (1281), Expect = 6e-139, Method: Compositional matrix adjust. Identities = 261/294 (89%), Positives = 272/294 (93%), Gaps = 0/294 (0%) Query 10 RSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTE 69 R+ RDYALFVVLVGPNV LLLLF+YRPLADNIRLSFFDWNVSDP A +VG SNY E Sbjct 10 RARHRPWRDYALFVVLVGPNVGLLLLFIYRPLADNIRLSFFDWNVSDPKADYVGFSNYAE 69 Query 70 WFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAA 129 WF R DTRQIV NTAVFT AAVVGSMVLGL LAMLLD+PLR RNLVRS VFAPFVISGAA Sbjct 70 WFARDDTRQIVLNTAVFTTAAVVGSMVLGLVLAMLLDQPLRARNLVRSMVFAPFVISGAA 129 Query 130 VGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAA 189 VGLAAQFVFDPHFGL+QDLL RIGV VP+FYQDA WA+FMVT+TYVWKNLGYTFVIYLAA Sbjct 130 VGLAAQFVFDPHFGLVQDLLARIGVNVPNFYQDAHWAMFMVTVTYVWKNLGYTFVIYLAA 189 Query 190 LQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGG 249 LQGVRRDLLEAAEIDGASRW FRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGG Sbjct 190 LQGVRRDLLEAAEIDGASRWTTFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGG 249 Query 250 PEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 P+GTGTTTMVYQVY+ETFRNFRAGYGATVATIMFLVLLA+TYYQVRVMDRGQRQ Sbjct 250 PQGTGTTTMVYQVYLETFRNFRAGYGATVATIMFLVLLAITYYQVRVMDRGQRQ 303 >gi|118617686|ref|YP_906018.1| SN-glycerol-3-phosphate transport integral membrane protein ABC transporter UgpA [Mycobacterium ulcerans Agy99] gi|183981911|ref|YP_001850202.1| SN-glycerol-3-phosphate transport integral membrane protein ABC transporter UgpA [Mycobacterium marinum M] gi|118569796|gb|ABL04547.1| SN-glycerol-3-phosphate transport integral membrane protein ABC transporter UgpA [Mycobacterium ulcerans Agy99] gi|183175237|gb|ACC40347.1| SN-glycerol-3-phosphate transport integral membrane protein ABC transporter UgpA [Mycobacterium marinum M] Length=299 Score = 470 bits (1210), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 254/287 (89%), Positives = 267/287 (94%), Gaps = 0/287 (0%) Query 17 RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDT 76 RDYALFV LVGPN+ALLLLFVYRPL DNIRLSFFDWN+SDP+A FVG SNY EWF+R DT Sbjct 13 RDYALFVALVGPNLALLLLFVYRPLVDNIRLSFFDWNISDPTAEFVGFSNYIEWFSRPDT 72 Query 77 RQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQF 136 RQIV NTA+FT AAV GSMVLGL LAMLLD+PLRGRNLVRSTVFAPFVISGAAVGLAAQF Sbjct 73 RQIVANTAIFTTAAVAGSMVLGLLLAMLLDQPLRGRNLVRSTVFAPFVISGAAVGLAAQF 132 Query 137 VFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRD 196 VFDPHFGL+QDLL R+GV PDFYQD WALFMVT+TYVWKNLGYT VIYLAALQGVRRD Sbjct 133 VFDPHFGLVQDLLHRVGVNAPDFYQDTPWALFMVTVTYVWKNLGYTCVIYLAALQGVRRD 192 Query 197 LLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTT 256 LLEAAEIDGASRW FRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTT Sbjct 193 LLEAAEIDGASRWTSFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTT 252 Query 257 TMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 TMVYQVY+ETFRNFRAGYGAT+AT+MFL LL VTYYQVRVMDRGQ+Q Sbjct 253 TMVYQVYLETFRNFRAGYGATIATMMFLFLLVVTYYQVRVMDRGQQQ 299 >gi|226308455|ref|YP_002768415.1| ABC transporter permease protein [Rhodococcus erythropolis PR4] gi|226187572|dbj|BAH35676.1| putative ABC transporter permease protein [Rhodococcus erythropolis PR4] Length=324 Score = 433 bits (1113), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 238/317 (76%), Positives = 265/317 (84%), Gaps = 14/317 (4%) Query 1 MAAPQRARLRSSKERV--------------RDYALFVVLVGPNVALLLLFVYRPLADNIR 46 +A+ Q A +RSS ER RDYALF +LVGPN+ALL+LF YRPL DNIR Sbjct 8 VASGQTASVRSSPERTLPTSGKPGLWGRPWRDYALFALLVGPNLALLILFTYRPLVDNIR 67 Query 47 LSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLD 106 LSFFDWN++DP A F+GLSNY EWF RSDT QIV NT VFT VVGSMV+GLALAMLLD Sbjct 68 LSFFDWNIADPKATFIGLSNYREWFGRSDTWQIVTNTVVFTLVTVVGSMVIGLALAMLLD 127 Query 107 RPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWA 166 R L GRNLVRS +FAPFVISGAA+G+A QFVFDP+FGLIQDLL R+G+ PDFYQD WA Sbjct 128 RKLVGRNLVRSAIFAPFVISGAAIGVAFQFVFDPNFGLIQDLLHRVGLQSPDFYQDPHWA 187 Query 167 LFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFF 226 LFMVT+TY+WKNLGYTFVIYLAALQGVR++L EAAEIDGA W FRRVLLPQLRPTTFF Sbjct 188 LFMVTVTYMWKNLGYTFVIYLAALQGVRQELNEAAEIDGAKPWTKFRRVLLPQLRPTTFF 247 Query 227 LSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVL 286 LSITV++NSLQVFD+INVMTRGGP GTGTTTMVYQVY ETFRNFRAGYGATVATIMFL+L Sbjct 248 LSITVMLNSLQVFDIINVMTRGGPLGTGTTTMVYQVYNETFRNFRAGYGATVATIMFLIL 307 Query 287 LAVTYYQVRVMDRGQRQ 303 L +T YQVR MDRG+ + Sbjct 308 LIITVYQVRAMDRGEEK 324 >gi|229489197|ref|ZP_04383063.1| ABC sugar transporter, permease component [Rhodococcus erythropolis SK121] gi|229324701|gb|EEN90456.1| ABC sugar transporter, permease component [Rhodococcus erythropolis SK121] Length=324 Score = 432 bits (1110), Expect = 4e-119, Method: Compositional matrix adjust. Identities = 238/317 (76%), Positives = 264/317 (84%), Gaps = 14/317 (4%) Query 1 MAAPQRARLRSSKERV--------------RDYALFVVLVGPNVALLLLFVYRPLADNIR 46 +A Q A +RSS ER RDYALF +LVGPN+ALL+LF YRPL DNIR Sbjct 8 VAGGQTASVRSSPERTLPTSGKPGLWGRPWRDYALFALLVGPNLALLILFTYRPLVDNIR 67 Query 47 LSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLD 106 LSFFDWN++DP A F+GLSNY EWF RSDT QIV NT VFT VVGSMV+GLALAMLLD Sbjct 68 LSFFDWNIADPKATFIGLSNYREWFGRSDTWQIVTNTVVFTLVTVVGSMVIGLALAMLLD 127 Query 107 RPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWA 166 R L GRNLVRS +FAPFVISGAA+G+A QFVFDP+FGLIQDLL R+G+ PDFYQD WA Sbjct 128 RKLVGRNLVRSAIFAPFVISGAAIGVAFQFVFDPNFGLIQDLLHRVGLQSPDFYQDPHWA 187 Query 167 LFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFF 226 LFMVT+TY+WKNLGYTFVIYLAALQGVR++L EAAEIDGA W FRRVLLPQLRPTTFF Sbjct 188 LFMVTVTYMWKNLGYTFVIYLAALQGVRQELNEAAEIDGAKPWTKFRRVLLPQLRPTTFF 247 Query 227 LSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVL 286 LSITV++NSLQVFD+INVMTRGGP GTGTTTMVYQVY ETFRNFRAGYGATVATIMFL+L Sbjct 248 LSITVMLNSLQVFDIINVMTRGGPLGTGTTTMVYQVYNETFRNFRAGYGATVATIMFLIL 307 Query 287 LAVTYYQVRVMDRGQRQ 303 L +T YQVR MDRG+ + Sbjct 308 LIITVYQVRAMDRGEEK 324 >gi|111022081|ref|YP_705053.1| sugar ABC transporter permease [Rhodococcus jostii RHA1] gi|110821611|gb|ABG96895.1| ABC sugar transporter, permease component [Rhodococcus jostii RHA1] Length=328 Score = 420 bits (1080), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 230/306 (76%), Positives = 259/306 (85%), Gaps = 6/306 (1%) Query 2 AAPQRARLRSSKERV-----RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSD 56 ++PQR+ K+ + RDYALF LVGPN+ LL+LF YRPL DNIRLSFFDWN++D Sbjct 21 SSPQRSLPSPGKQGLLGRPWRDYALFAALVGPNLVLLVLFTYRPLVDNIRLSFFDWNIAD 80 Query 57 PSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVR 116 P A FVG NY EW++R+DT QIV NT VFT A VVGSM+ GLALA+LLDR L GRNLVR Sbjct 81 PVAMFVGWDNYREWWSRTDTWQIVGNTVVFTVATVVGSMIAGLALAVLLDRNLHGRNLVR 140 Query 117 STVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVG-VPDFYQDARWALFMVTITYV 175 S +FAPFVISGAA+G+A QFVFDP FGLIQDLL R GVG VPDFYQD WALFMVT+TY+ Sbjct 141 SAIFAPFVISGAAIGVAFQFVFDPRFGLIQDLLHRAGVGSVPDFYQDPHWALFMVTVTYL 200 Query 176 WKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINS 235 WKNLGYTFVIYLAALQG RR+L EAAEIDGA RW FRRV+LPQLRPTT+FLSITV++ S Sbjct 201 WKNLGYTFVIYLAALQGTRRELTEAAEIDGAGRWTTFRRVILPQLRPTTYFLSITVMLGS 260 Query 236 LQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVR 295 LQVFD+INVMTRGGP GTGTTTMVYQVY E+FRNFRAGYGATVATIMFLVLL +T YQVR Sbjct 261 LQVFDIINVMTRGGPLGTGTTTMVYQVYNESFRNFRAGYGATVATIMFLVLLGITVYQVR 320 Query 296 VMDRGQ 301 +MDRG+ Sbjct 321 IMDRGE 326 >gi|343927708|ref|ZP_08767176.1| putative ABC transporter permease protein [Gordonia alkanivorans NBRC 16433] gi|343762349|dbj|GAA14102.1| putative ABC transporter permease protein [Gordonia alkanivorans NBRC 16433] Length=305 Score = 414 bits (1064), Expect = 8e-114, Method: Compositional matrix adjust. Identities = 218/300 (73%), Positives = 244/300 (82%), Gaps = 5/300 (1%) Query 4 PQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVG 63 PQ R R R YALF+ +VGPN+ LL +F YRPL +NIR+SF+DWN+S P A F+G Sbjct 10 PQVGRRRPW----RTYALFLAIVGPNLVLLGVFTYRPLIENIRMSFYDWNISSPGATFIG 65 Query 64 LSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPF 123 SNY EW TRSDT IV NT VFT AV GSM++GL LAMLLDR LRGRNLVRS VFAPF Sbjct 66 WSNYREWATRSDTWTIVSNTVVFTVVAVAGSMLIGLVLAMLLDRALRGRNLVRSVVFAPF 125 Query 124 VISGAAVGLAAQFVFDPHFGLIQDLLRRIGVG-VPDFYQDARWALFMVTITYVWKNLGYT 182 VISGAA+G+A QFVFDPHFGLI DL+ R G+G PDFYQ WALFMVT+TY+WKN+GYT Sbjct 126 VISGAAIGIAFQFVFDPHFGLINDLMTRFGLGSAPDFYQQPGWALFMVTVTYLWKNIGYT 185 Query 183 FVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVI 242 FVIYLAALQ R DL EAA+IDGAS FRRVLLPQLRPTT+FLSITV++NSLQVFD+I Sbjct 186 FVIYLAALQARRVDLDEAAQIDGASAATHFRRVLLPQLRPTTYFLSITVMLNSLQVFDII 245 Query 243 NVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQR 302 NVMTRGGP G GTTTMVYQVY E+FRNFRAGYGATVATIMF+VLL +T QVRVMDR R Sbjct 246 NVMTRGGPLGNGTTTMVYQVYEESFRNFRAGYGATVATIMFVVLLVITVAQVRVMDRESR 305 >gi|25028070|ref|NP_738124.1| putative ABC transporter permease protein [Corynebacterium efficiens YS-314] gi|259505622|ref|ZP_05748524.1| sn-glycerol-3-phosphate transport system permease protein [Corynebacterium efficiens YS-314] gi|23493354|dbj|BAC18324.1| putative ABC transporter permease protein [Corynebacterium efficiens YS-314] gi|259166787|gb|EEW51341.1| sn-glycerol-3-phosphate transport system permease protein [Corynebacterium efficiens YS-314] Length=309 Score = 398 bits (1023), Expect = 6e-109, Method: Compositional matrix adjust. Identities = 193/268 (73%), Positives = 223/268 (84%), Gaps = 0/268 (0%) Query 36 FVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSM 95 F YRPL DN RLSFF WN+S P++ F+GL NY E+FTR+DT Q+V NT VFT AV GSM Sbjct 42 FTYRPLLDNFRLSFFSWNISSPTSTFIGLDNYIEFFTRADTAQVVLNTVVFTFFAVAGSM 101 Query 96 VLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVG 155 GLALAMLLD+ LRGRN VRS VFAPFVISGAAVG+A QFVFDP+FGL+QDLL R+GV Sbjct 102 FFGLALAMLLDQKLRGRNFVRSMVFAPFVISGAAVGVAFQFVFDPNFGLVQDLLGRLGVD 161 Query 156 VPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRV 215 P+FYQD WA+FMVT T++WKNLGY+FVIYLAALQG+ RDL EAA +DGAS W F RV Sbjct 162 TPNFYQDPNWAMFMVTFTFIWKNLGYSFVIYLAALQGLNRDLAEAAAVDGASAWTRFWRV 221 Query 216 LLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYG 275 LPQLRPTTFFLSITVL++S+QVFD+I+ MTRGGP G GTTT+VYQVY ETF N+RAGYG Sbjct 222 TLPQLRPTTFFLSITVLLSSVQVFDIIHTMTRGGPLGNGTTTLVYQVYTETFTNYRAGYG 281 Query 276 ATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 ATV+TI+FL LL +T QVR MDRG R+ Sbjct 282 ATVSTILFLTLLIITAIQVRYMDRGARK 309 >gi|319947669|ref|ZP_08021887.1| putative ABC transporter permease protein [Dietzia cinnamea P4] gi|319438659|gb|EFV93561.1| putative ABC transporter permease protein [Dietzia cinnamea P4] Length=319 Score = 388 bits (996), Expect = 7e-106, Method: Compositional matrix adjust. Identities = 200/282 (71%), Positives = 238/282 (85%), Gaps = 0/282 (0%) Query 18 DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTR 77 + LF+ LV PN+ALL +FVYRPL DNIRLSFFDWN+S P++ F+G SNY EW+ R+D+ Sbjct 35 EKVLFLALVLPNLALLGVFVYRPLIDNIRLSFFDWNISSPTSTFIGWSNYIEWWNRADSW 94 Query 78 QIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFV 137 ++V NT +FT AAVVGSM+LGLALA+LLD+ L GR +VRS VFAPFVI+GAA+G+A QF+ Sbjct 95 EVVQNTVIFTVAAVVGSMILGLALALLLDQQLVGRGIVRSAVFAPFVIAGAAIGVAFQFI 154 Query 138 FDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDL 197 FDP FG+I LL +G+ VP+FYQD WALFMVT+TY+WKNLGY+FVIYLAALQ +L Sbjct 155 FDPRFGMISALLTMVGLPVPNFYQDPDWALFMVTVTYIWKNLGYSFVIYLAALQAKPAEL 214 Query 198 LEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTT 257 EAAE+DGA RWA FR V LP LRPTTFFLSITV++NSLQVFD+I VMTRGGP+G GTTT Sbjct 215 YEAAEMDGAGRWATFRSVTLPLLRPTTFFLSITVMLNSLQVFDIIYVMTRGGPQGNGTTT 274 Query 258 MVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 MV+QVY ETF+NFRAGYGATVATIMFLVLL +T QVRVMDR Sbjct 275 MVFQVYQETFQNFRAGYGATVATIMFLVLLVITAIQVRVMDR 316 >gi|309811154|ref|ZP_07704950.1| ABC transporter, permease protein [Dermacoccus sp. Ellin185] gi|308434884|gb|EFP58720.1| ABC transporter, permease protein [Dermacoccus sp. Ellin185] Length=316 Score = 378 bits (970), Expect = 6e-103, Method: Compositional matrix adjust. Identities = 188/268 (71%), Positives = 221/268 (83%), Gaps = 0/268 (0%) Query 35 LFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGS 94 +F YRPL DNIRLSF DW +S P+ ++GL NY+ W ++ Q++ NTA+FT A V S Sbjct 48 VFTYRPLIDNIRLSFTDWTLSAPTLNYIGLQNYSTWLHDANAHQVLRNTAIFTVATVGLS 107 Query 95 MVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGV 154 M++GL LA+LLDR LRGRNLVRS +FAPFV+SG AVGLA QFVFDPHFGL+ DL R+G+ Sbjct 108 MMIGLGLALLLDRQLRGRNLVRSAIFAPFVLSGTAVGLAFQFVFDPHFGLLSDLAHRVGL 167 Query 155 GVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRR 214 VPDFYQD WAL MVT+TYVWKN+GYTFVIYLAALQG R DL EAAEIDGAS W F + Sbjct 168 SVPDFYQDPNWALVMVTLTYVWKNIGYTFVIYLAALQGRRTDLDEAAEIDGASSWRRFTK 227 Query 215 VLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGY 274 VLLPQLRPTTFFLSITVL+NS+QVFD+I +MTRGGP+G GT+T+VYQVY ETF N RAGY Sbjct 228 VLLPQLRPTTFFLSITVLLNSVQVFDIIQIMTRGGPQGYGTSTLVYQVYQETFVNQRAGY 287 Query 275 GATVATIMFLVLLAVTYYQVRVMDRGQR 302 GAT+ATIMFL+LL VT QVRVMD+ Q+ Sbjct 288 GATIATIMFLILLVVTVVQVRVMDKEQK 315 >gi|227488068|ref|ZP_03918384.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227541463|ref|ZP_03971512.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227091930|gb|EEI27242.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227182745|gb|EEI63717.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Corynebacterium glucuronolyticum ATCC 51866] Length=315 Score = 373 bits (957), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 185/304 (61%), Positives = 233/304 (77%), Gaps = 5/304 (1%) Query 4 PQRARLRSSKERVRDYA-----LFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPS 58 P+ + + K++ Y+ L LV PN+ LL++F YRPL DNIR+SF++WN+S P Sbjct 12 PEVSETFAHKKQRPQYSTKQMLLAAALVLPNLILLVIFTYRPLIDNIRISFYNWNISSPR 71 Query 59 ARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRST 118 +FVGL NY EWFT +T+ +VFNT VFT AV GSM++GLALA+LLD+ L GR+ VRS Sbjct 72 MKFVGLDNYIEWFTAPETKTVVFNTVVFTFFAVAGSMMIGLALALLLDQKLFGRSAVRSM 131 Query 119 VFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKN 178 VFAP+VI+GAA+G+A QFVFDP++GLIQ L G+ P+FYQ+++WALFM+T TYVWKN Sbjct 132 VFAPYVIAGAAIGVAFQFVFDPNYGLIQYFLGWFGIESPNFYQESKWALFMITTTYVWKN 191 Query 179 LGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQV 238 +GY FVIYLAALQG R+DL EAAEIDG F RV++PQLR TTFFLSITVL+NS QV Sbjct 192 VGYVFVIYLAALQGRRKDLDEAAEIDGTPPMRRFFRVVMPQLRGTTFFLSITVLLNSFQV 251 Query 239 FDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMD 298 FD+IN MT+GGP G GT+TMV+QVY ETF N RAGYGA VATIMFLV+L +T QV + Sbjct 252 FDIINAMTKGGPFGYGTSTMVFQVYQETFVNSRAGYGAAVATIMFLVVLVITAIQVYYQE 311 Query 299 RGQR 302 +G + Sbjct 312 KGDK 315 >gi|334564201|ref|ZP_08517192.1| putative ABC transporter permease protein [Corynebacterium bovis DSM 20582] Length=301 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 201/301 (67%), Positives = 239/301 (80%), Gaps = 0/301 (0%) Query 3 APQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFV 62 A R+ R+ + R+ L VVL+ PN+ LL +F YRPL DNIRLSFFDWN+S P++ F+ Sbjct 1 AAGRSTRRAGRWNGRESLLAVVLLAPNLILLGVFTYRPLLDNIRLSFFDWNISSPTSTFI 60 Query 63 GLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAP 122 G+ NY EWFTR DT +IV NT FT AV GSM+LGL LA+LLD+ L GRNLVR +FAP Sbjct 61 GVKNYVEWFTRPDTPRIVGNTVFFTVFAVAGSMILGLVLALLLDQRLPGRNLVRGVIFAP 120 Query 123 FVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYT 182 FVISGAAVG++ QFVFDP+FG++ DLLRR+GV PD+Y D WAL MVT +VWKNLGY Sbjct 121 FVISGAAVGISLQFVFDPNFGMVNDLLRRLGVEGPDWYGDPAWALVMVTFAFVWKNLGYA 180 Query 183 FVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVI 242 FVIYLAA+QG+ RDL EAA+IDGA RWA FRRV LPQLRPTTFFL IT+L+NS+QVFD+I Sbjct 181 FVIYLAAVQGLSRDLAEAAQIDGAGRWAAFRRVTLPQLRPTTFFLMITILLNSVQVFDII 240 Query 243 NVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQR 302 NVMT GGP G GTTT+V+QVY E+F NFRAGYGA VAT++F+VLL VT QVRVMDR Sbjct 241 NVMTAGGPRGDGTTTLVFQVYRESFVNFRAGYGAAVATVLFVVLLVVTVIQVRVMDRRTA 300 Query 303 Q 303 Q Sbjct 301 Q 301 >gi|62390268|ref|YP_225670.1| sn-glycerol-3-phosphate transport system permease protein [Corynebacterium glutamicum ATCC 13032] gi|145295518|ref|YP_001138339.1| hypothetical protein cgR_1446 [Corynebacterium glutamicum R] gi|41325605|emb|CAF21394.1| sn-Glycerol-3-phosphate transport system permease protein [Corynebacterium glutamicum ATCC 13032] gi|140845438|dbj|BAF54437.1| hypothetical protein [Corynebacterium glutamicum R] Length=310 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 200/305 (66%), Positives = 243/305 (80%), Gaps = 2/305 (0%) Query 1 MAAPQRARLRSSKERVR--DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPS 58 ++ P+ +LR +R R ++ L L+ PN+ LL +F YRPL DN RLSFF+WN+S P+ Sbjct 5 ISEPEVDKLRKRAKRSRRTEWWLAAALLAPNLLLLAIFTYRPLLDNFRLSFFNWNISSPT 64 Query 59 ARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRST 118 + F+G NY E+FTRSDT Q+V NT +FT AV+GSMVLGL LAMLLD+ L GRN VRS Sbjct 65 STFIGFDNYVEFFTRSDTLQVVLNTVIFTACAVIGSMVLGLLLAMLLDQKLFGRNFVRSM 124 Query 119 VFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKN 178 VFAPFVISGAA+G+A QFVFDP+FGL+QDLL RIGV P FYQ+ WALFMVT T+VWKN Sbjct 125 VFAPFVISGAAIGVAFQFVFDPNFGLVQDLLGRIGVDSPQFYQNPNWALFMVTFTFVWKN 184 Query 179 LGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQV 238 LGY+FVIYLAALQG+ +DL EAA +DGAS W F +V LPQLRPTTFFLSITV +NS+QV Sbjct 185 LGYSFVIYLAALQGLNKDLSEAAAVDGASAWTRFWKVTLPQLRPTTFFLSITVTLNSVQV 244 Query 239 FDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMD 298 FD+I+ MTRGGP G GTTT+VYQVY ETF N+RAGYGAT+ATI+FL+LL +T QVR MD Sbjct 245 FDIIHTMTRGGPLGNGTTTLVYQVYTETFTNYRAGYGATIATILFLLLLIITVIQVRYMD 304 Query 299 RGQRQ 303 + +Q Sbjct 305 KENKQ 309 >gi|296141204|ref|YP_003648447.1| binding-protein-dependent transporters inner membrane component [Tsukamurella paurometabola DSM 20162] gi|296029338|gb|ADG80108.1| binding-protein-dependent transport systems inner membrane component [Tsukamurella paurometabola DSM 20162] Length=311 Score = 361 bits (927), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 186/302 (62%), Positives = 231/302 (77%), Gaps = 3/302 (0%) Query 4 PQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPS-ARFV 62 P + + R+RD LF++ V PN+ALL +F YRPL DN+ LSF DW+++ P A ++ Sbjct 11 PTAEKGVRANLRLRDNVLFLLFVVPNLALLAVFTYRPLIDNVFLSFKDWSLASPDPATWI 70 Query 63 GLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAP 122 GL NY E+FT++++ Q+V T +FT +A+V SMVLGLALAMLLD+ L+GRNLVRS VFAP Sbjct 71 GLDNYREFFTKAESWQVVSVTLIFTVSALVISMVLGLALAMLLDQNLKGRNLVRSAVFAP 130 Query 123 FVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYT 182 FVISGAA+G A FVF+P FG +L G+ PDFYQ+ WALF+VT TY+WKNLGYT Sbjct 131 FVISGAAIGAAFYFVFNPQFGAAASILSWFGITSPDFYQEPGWALFLVTFTYIWKNLGYT 190 Query 183 FVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVI 242 FVIYLAALQG+ +DL EAA IDG W F RV PQLRP T+FLSITVL+NSLQVFD++ Sbjct 191 FVIYLAALQGLNKDLDEAAAIDGTPTWRKFWRVTFPQLRPATYFLSITVLLNSLQVFDIV 250 Query 243 NVM-TRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQ 301 N+M GGP+G GTTTMV+ +Y +TFRN RAGYGAT+ATIMFLVLL VT QVR+MDRG Sbjct 251 NIMFPDGGPQG-GTTTMVFDIYWQTFRNQRAGYGATIATIMFLVLLIVTVVQVRMMDRGN 309 Query 302 RQ 303 + Sbjct 310 DK 311 >gi|23308847|ref|NP_600602.2| ABC-type transporter, permease component [Corynebacterium glutamicum ATCC 13032] gi|21324151|dbj|BAB98776.1| ABC-type transporter, permease components [Corynebacterium glutamicum ATCC 13032] Length=301 Score = 361 bits (927), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 198/299 (67%), Positives = 239/299 (80%), Gaps = 0/299 (0%) Query 5 QRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGL 64 + R R+ + R ++ L L+ PN+ LL +F YRPL DN RLSFF+WN+S P++ F+G Sbjct 2 DKLRKRAKRSRRTEWWLAAALLAPNLLLLAIFTYRPLLDNFRLSFFNWNISSPTSTFIGF 61 Query 65 SNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFV 124 NY E+FTRSDT Q+V NT +FT AV+GSMVLGL LAMLLD+ L GRN VRS VFAPFV Sbjct 62 DNYVEFFTRSDTLQVVLNTVIFTACAVIGSMVLGLLLAMLLDQKLFGRNFVRSMVFAPFV 121 Query 125 ISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFV 184 ISGAA+G+A QFVFDP+FGL+QDLL RIGV P FYQ+ WALFMVT T+VWKNLGY+FV Sbjct 122 ISGAAIGVAFQFVFDPNFGLVQDLLGRIGVDSPQFYQNPNWALFMVTFTFVWKNLGYSFV 181 Query 185 IYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINV 244 IYLAALQG+ +DL EAA +DGAS W F +V LPQLRPTTFFLSITV +NS+QVFD+I+ Sbjct 182 IYLAALQGLNKDLSEAAAVDGASAWTRFWKVTLPQLRPTTFFLSITVTLNSVQVFDIIHT 241 Query 245 MTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 MTRGGP G GTTT+VYQVY ETF N+RAGYGAT+ATI+FL+LL +T QVR MD+ +Q Sbjct 242 MTRGGPLGNGTTTLVYQVYTETFTNYRAGYGATIATILFLLLLIITVIQVRYMDKENKQ 300 >gi|31794011|ref|NP_856504.1| sn-glycerol-3-phosphate ABC transporter integral membrane protein [Mycobacterium bovis AF2122/97] gi|31619605|emb|CAD95044.1| PROBABLE Sn-GLYCEROL-3-PHOSPHATE TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER UGPAB [SECOND PART] [Mycobacterium bovis AF2122/97] Length=180 Score = 358 bits (920), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 179/180 (99%), Positives = 180/180 (100%), Gaps = 0/180 (0%) Query 124 VISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTF 183 +ISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTF Sbjct 1 MISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTF 60 Query 184 VIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVIN 243 VIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVIN Sbjct 61 VIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVIN 120 Query 244 VMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 303 VMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ Sbjct 121 VMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ 180 >gi|227547721|ref|ZP_03977770.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Corynebacterium lipophiloflavum DSM 44291] gi|227080204|gb|EEI18167.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Corynebacterium lipophiloflavum DSM 44291] Length=319 Score = 355 bits (911), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 188/301 (63%), Positives = 233/301 (78%), Gaps = 3/301 (0%) Query 2 AAPQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARF 61 A+ QR R+ ++V L +L+GPN+ LL+LF YRPL DNIR+SFF+WN++ P+ F Sbjct 22 ASRQRNSARTDWKQV---GLAALLIGPNLILLILFTYRPLVDNIRVSFFNWNIASPTMNF 78 Query 62 VGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFA 121 VGL NY +WF +T ++VFNTAVFT +AVVGSMVLGL LA+LLD+ L GR+ RSTVFA Sbjct 79 VGLDNYIQWFQAPETGRVVFNTAVFTFSAVVGSMVLGLTLALLLDQKLFGRSAARSTVFA 138 Query 122 PFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGY 181 P+VISGAA+G+A QFVFDP +GLIQ +L G+ VP+FYQ++ WALFMVT TY+WKN GY Sbjct 139 PYVISGAAIGVAFQFVFDPSYGLIQYVLGIFGLPVPNFYQNSNWALFMVTTTYIWKNTGY 198 Query 182 TFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDV 241 TFVIYLAALQ R+DL EA+EIDG F RV+ PQLR TTFFL ITVL+NS QVFD+ Sbjct 199 TFVIYLAALQARRKDLDEASEIDGTPPVRHFFRVIAPQLRGTTFFLLITVLLNSFQVFDI 258 Query 242 INVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQ 301 I+ MT GGP G GT+TMVYQVY ETF N RAGYGA +ATIMFL +LA+T Q+++ R + Sbjct 259 ISAMTNGGPFGYGTSTMVYQVYQETFINNRAGYGAAIATIMFLAVLAITVLQLKIQQRIE 318 Query 302 R 302 R Sbjct 319 R 319 >gi|311739851|ref|ZP_07713685.1| sn-Glycerol-3-phosphate ABC superfamily ATP binding cassette transporter, permease protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304924|gb|EFQ80993.1| sn-Glycerol-3-phosphate ABC superfamily ATP binding cassette transporter, permease protein [Corynebacterium pseudogenitalium ATCC 33035] Length=326 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 191/307 (63%), Positives = 239/307 (78%), Gaps = 9/307 (2%) Query 2 AAPQRARL---------RSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDW 52 A+P RA ++ + R +++ L L+ PN+ LL +F YRPL DNIRLSFF+W Sbjct 18 ASPARAESPGDSAALVRKAKRNRHKEWLLAAALLAPNLILLAVFTYRPLLDNIRLSFFNW 77 Query 53 NVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGR 112 N+S P++ FVGL NY EWF+R DT+ IV NT VFT AV+GSMV+GLALA+LL++ ++GR Sbjct 78 NISSPTSTFVGLDNYVEWFSRDDTKTIVLNTLVFTFFAVIGSMVIGLALALLLNQNIKGR 137 Query 113 NLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTI 172 N RS VFAP+ ISGAA+G+A QFVFDP+FGLIQ++L GV P+FY WA+FMVT Sbjct 138 NFARSVVFAPYAISGAAIGIAFQFVFDPNFGLIQEILGWFGVDSPNFYAVPGWAMFMVTF 197 Query 173 TYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVL 232 T+VWKNLGYTFVIYLAALQG+ ++L EAA IDG RW F RV +PQLR TTFFLSITVL Sbjct 198 TFVWKNLGYTFVIYLAALQGLDKELDEAAAIDGTGRWRKFWRVTMPQLRNTTFFLSITVL 257 Query 233 INSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYY 292 +NS+QVFD+INVMTRGGP+G GT T+V+Q+Y ETF NFRAGYGAT ATI+FL+LL +T Sbjct 258 LNSVQVFDIINVMTRGGPQGNGTQTLVFQIYNETFVNFRAGYGATAATILFLILLIITLI 317 Query 293 QVRVMDR 299 QVR+MD+ Sbjct 318 QVRIMDK 324 >gi|255323851|ref|ZP_05364977.1| ABC-type transporter, permease component [Corynebacterium tuberculostearicum SK141] gi|255299031|gb|EET78322.1| ABC-type transporter, permease component [Corynebacterium tuberculostearicum SK141] Length=326 Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 187/290 (65%), Positives = 234/290 (81%), Gaps = 0/290 (0%) Query 10 RSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTE 69 ++ + R +++ L L+ PN+ LL +F YRPL DNIRLSFF+WN+S P++ FVGL NY E Sbjct 35 KAKRNRHKEWLLAAALLAPNLILLAVFTYRPLLDNIRLSFFNWNISSPNSTFVGLDNYVE 94 Query 70 WFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAA 129 WF+R DT+ IV NT VFT AV+GSMV+GLALA+LL++ ++GRN RS VFAP+ ISGAA Sbjct 95 WFSRDDTKTIVLNTLVFTFFAVIGSMVIGLALALLLNQNIKGRNFARSVVFAPYAISGAA 154 Query 130 VGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAA 189 +G+A QFVFDP+FGLIQ++L GV P+FY WA+FMVT T+VWKNLGYTFVIYLAA Sbjct 155 IGIAFQFVFDPNFGLIQEILGWFGVDSPNFYAVPGWAMFMVTFTFVWKNLGYTFVIYLAA 214 Query 190 LQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGG 249 LQG+ ++L EAA IDG RW F RV +PQLR TTFFLSITVL+NS+QVFD+INVMTRGG Sbjct 215 LQGLDKELDEAAAIDGTGRWRKFWRVTMPQLRNTTFFLSITVLLNSVQVFDIINVMTRGG 274 Query 250 PEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 P+G GT T+V+Q+Y ETF NFRAGYGAT ATI+FL+LL +T QVR+MD+ Sbjct 275 PQGNGTQTLVFQIYNETFVNFRAGYGATAATILFLILLIITLIQVRIMDK 324 >gi|344043412|gb|EGV39105.1| hypothetical protein CgS9114_14537 [Corynebacterium glutamicum S9114] Length=258 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 180/257 (71%), Positives = 214/257 (84%), Gaps = 0/257 (0%) Query 47 LSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLD 106 +SFF+WN+S P++ F+G NY E+FTRSDT Q+V NT +FT AV+GSMVLGL LAMLLD Sbjct 1 MSFFNWNISSPTSTFIGFDNYVEFFTRSDTLQVVLNTVIFTACAVIGSMVLGLLLAMLLD 60 Query 107 RPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWA 166 + L GRN VRS VFAPFVISGAA+G+A QFVFDP+FGL+QDLL RIGV P FYQ+ WA Sbjct 61 QKLFGRNFVRSMVFAPFVISGAAIGVAFQFVFDPNFGLVQDLLGRIGVDSPQFYQNPNWA 120 Query 167 LFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFF 226 LFMVT T+VWKNLGY+FVIYLAALQG+ +DL EAA +DGAS W F +V LPQLRPTTFF Sbjct 121 LFMVTFTFVWKNLGYSFVIYLAALQGLNKDLSEAAAVDGASAWTRFWKVTLPQLRPTTFF 180 Query 227 LSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVL 286 LSITV +NS+QVFD+I+ MTRGGP G GTTT+VYQVY ETF N+RAGYGAT+ATI+FL+L Sbjct 181 LSITVTLNSVQVFDIIHTMTRGGPLGNGTTTLVYQVYTETFTNYRAGYGATIATILFLLL 240 Query 287 LAVTYYQVRVMDRGQRQ 303 L +T QVR MD+ +Q Sbjct 241 LIITVIQVRYMDKENKQ 257 >gi|227496130|ref|ZP_03926436.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces urogenitalis DSM 15434] gi|226834364|gb|EEH66747.1| sugar ABC superfamily ATP binding cassette transporter, membrane protein [Actinomyces urogenitalis DSM 15434] Length=306 Score = 331 bits (848), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 192/292 (66%), Positives = 224/292 (77%), Gaps = 3/292 (1%) Query 4 PQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVG 63 P R R R+ ++V L L+GPN+ LLL+F YRPL DNIR+S + WN+S P FVG Sbjct 13 PPRRRRRTDLKQV---LLAAALIGPNLVLLLVFTYRPLIDNIRISLYRWNISSPRMTFVG 69 Query 64 LSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPF 123 L NY ++F ++ I+ +T VFT AAVVGSMVLGL LA+LLDR LRGRN+VRS VF P+ Sbjct 70 LDNYVQYFRDPESWAIMGHTLVFTAAAVVGSMVLGLCLALLLDRRLRGRNIVRSLVFMPY 129 Query 124 VISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTF 183 VISGAA+G+A QFVFDP +GLIQDLL R+G+ P+FYQ+ WALFMVT TY+WKNLGYTF Sbjct 130 VISGAAIGVAFQFVFDPGYGLIQDLLARMGIASPNFYQEPGWALFMVTATYIWKNLGYTF 189 Query 184 VIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVIN 243 VIYLAALQG R DL EAAEID S+W RV LPQLR TT FLSITVL+NS QVFDVI Sbjct 190 VIYLAALQGRRTDLDEAAEIDRTSQWRKLWRVTLPQLRGTTVFLSITVLLNSFQVFDVIQ 249 Query 244 VMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVR 295 VMT+GGP T TTTMVYQVY ETF N RAGYGA VAT+MFLV+L +T Q R Sbjct 250 VMTKGGPFETSTTTMVYQVYQETFVNNRAGYGAAVATVMFLVVLVLTVVQAR 301 >gi|237786224|ref|YP_002906929.1| sn-glycerol-3-phosphate transport system, permease [Corynebacterium kroppenstedtii DSM 44385] gi|237759136|gb|ACR18386.1| sn-glycerol-3-phosphate transport system, permease protein [Corynebacterium kroppenstedtii DSM 44385] Length=306 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 187/265 (71%), Positives = 217/265 (82%), Gaps = 0/265 (0%) Query 35 LFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGS 94 +F YRPL DNIRLSFF WN+S SA FVGL NY EW TR DTR IV NT VFTG AV+GS Sbjct 36 VFTYRPLIDNIRLSFFRWNISSTSATFVGLDNYKEWLTRDDTRTIVLNTLVFTGFAVIGS 95 Query 95 MVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGV 154 M LGL LA++LD+ L GRN VRS FAPF +SGAA+G+A QF+FDPHFGLIQD+L R + Sbjct 96 MALGLILALILDQKLFGRNAVRSIAFAPFALSGAAIGVAFQFIFDPHFGLIQDILSRFHI 155 Query 155 GVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRR 214 VP+FY + WALFMVT T++WKNLGYTFVIYLAALQGV ++L EAA IDGA W + Sbjct 156 PVPNFYSEPAWALFMVTFTFIWKNLGYTFVIYLAALQGVNKELDEAAAIDGAGPWTRLWK 215 Query 215 VLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGY 274 V+LPQLRP+TFFLSITV +NS+QVFD+I+VMTRGGP+ TGTTT+VYQVY ETF NFRAGY Sbjct 216 VILPQLRPSTFFLSITVTLNSVQVFDIISVMTRGGPQTTGTTTLVYQVYQETFTNFRAGY 275 Query 275 GATVATIMFLVLLAVTYYQVRVMDR 299 GATVATI+FL+LL +T QVR MDR Sbjct 276 GATVATILFLILLCLTLVQVRYMDR 300 >gi|152964265|ref|YP_001360049.1| ABC transporter inner membrane protein [Kineococcus radiotolerans SRS30216] gi|151358782|gb|ABS01785.1| binding-protein-dependent transport systems inner membrane component [Kineococcus radiotolerans SRS30216] Length=306 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 152/297 (52%), Positives = 198/297 (67%), Gaps = 6/297 (2%) Query 8 RLRSSKERV---RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGL 64 R+ +++ R R + F++L GPNVALL+LFVY+PL N++ S WN+ +A +GL Sbjct 6 RVPAARPRTTPWRSWGTFLLLAGPNVALLVLFVYKPLIQNVQYSLLHWNLGSDTATAIGL 65 Query 65 SNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFV 124 NY +F+ T ++ T VF V G M +GLALA LLDR LRGR VR+ VFAP+V Sbjct 66 ENYRNYFSDPKTPAVLLTTLVFAVVTVGGCMAIGLALARLLDRELRGRTFVRAAVFAPYV 125 Query 125 ISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFV 184 +SG AVG+ FVFDP +GL+ LLR +G+ P++Y D WAL MV I Y+WK +GY + Sbjct 126 LSGVAVGMCWLFVFDPQYGLVSGLLRGLGLTSPNWYNDPDWALAMVCIVYLWKYVGYVAI 185 Query 185 IYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLI--NSLQVFDVI 242 IYLAALQ V DLLEAA+IDGAS F ++ P L PTT FLS+TV I NS FD+I Sbjct 186 IYLAALQSVPGDLLEAAQIDGASPLRTFWSIVFPLLSPTTLFLSVTVFIESNSGGSFDII 245 Query 243 NVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 MT+GGP GTTTMVYQVY E F + AGY + +AT++FL LLAVT Q+ ++R Sbjct 246 RAMTKGGPL-EGTTTMVYQVYQEAFVDGSAGYASAIATLLFLGLLAVTLVQMVFIER 301 >gi|269795190|ref|YP_003314645.1| carbohydrate ABC transporter membrane protein [Sanguibacter keddieii DSM 10542] gi|269097375|gb|ACZ21811.1| carbohydrate ABC transporter membrane protein [Sanguibacter keddieii DSM 10542] Length=316 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 147/282 (53%), Positives = 200/282 (71%), Gaps = 1/282 (0%) Query 18 DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTR 77 Y FV L GPNVALL++FVY+PL + + S WN+ P+AR VGL NY +WF T Sbjct 32 SYLTFVALAGPNVALLVIFVYKPLLQSFQYSTLQWNIGSPTARNVGLGNYVDWFQDPRTP 91 Query 78 QIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFV 137 +I+ TA+FT A V GS+VLGL LA+LL++ L GR + R+ FAP+V+SG AVG+ F+ Sbjct 92 EILTTTAIFTVATVGGSLVLGLLLALLLNQRLAGRGIARTVAFAPYVLSGIAVGMLWLFI 151 Query 138 FDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDL 197 FDP +GL+ +L IG+ PD+Y D WAL MV I Y+WKN+GY +IYLA LQ V +DL Sbjct 152 FDPRYGLMSTVLAWIGLNSPDWYNDGPWALAMVIIVYLWKNIGYVALIYLAGLQAVPQDL 211 Query 198 LEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTT 257 +AA +DGAS ++LP L PTTFFLS+T L++SLQ FD+I+ MT+GGP G+ TTT Sbjct 212 RDAAALDGASSRRTLVSIVLPLLGPTTFFLSVTTLLSSLQSFDIIHAMTKGGPLGS-TTT 270 Query 258 MVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 ++YQ+Y E+F + RAGY + VATI+F +LL VT Q++ ++R Sbjct 271 LMYQIYQESFVSGRAGYASAVATILFGILLVVTLVQLKFVER 312 >gi|297627492|ref|YP_003689255.1| Binding-protein-dependent transport systems inner membrane component [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923257|emb|CBL57854.1| Binding-protein-dependent transport systems inner membrane component [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length=331 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 144/297 (49%), Positives = 202/297 (69%), Gaps = 6/297 (2%) Query 4 PQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVG 63 P R R +S+ +R+ LFV L+ PNV L+ +FVYRP+ N+ S DW + +A+FVG Sbjct 35 PHRGR--ASRNGLREKLLFVALIAPNVVLIAVFVYRPIIMNLYYSLLDWTLGSSTAKFVG 92 Query 64 LSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPF 123 L NY E+FT D ++ TAVFT A V GSM +GL LA +L+R L GRN+ R+TVFAP+ Sbjct 93 LGNYVEFFTSRDAPSVLGTTAVFTIATVGGSMAIGLMLATVLNRRLIGRNVARATVFAPY 152 Query 124 VISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTF 183 V+SG VGL F+F P G++ +LR++ V P ++ D + +L MV + YVWKNLGY Sbjct 153 VLSGVGVGLVWSFIFGPTIGVLAGVLRKLNVASPQWFLDPKLSLVMVVLVYVWKNLGYCA 212 Query 184 VIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVIN 243 VIYLAALQ V RD+LEAA +DGASR F V+ P L PT FFL +T L+ SLQ FD+I Sbjct 213 VIYLAALQAVPRDVLEAAALDGASRTRTFWSVIWPLLGPTNFFLLLTTLLGSLQAFDIIR 272 Query 244 VMTRGGPEGTGTTTMVYQVYVETFRNF-RAGYGATVATIMFLVLLAVTYYQVRVMDR 299 +MT P G GTTT++Y Y++ F ++ RAGY A ++T++ ++L+ +T Q+R+++R Sbjct 273 IMT---PMGQGTTTLMYSSYLQAFGSYNRAGYSAAISTVLLVILMILTLVQMRLLER 326 >gi|289571023|ref|ZP_06451250.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis T17] gi|289544777|gb|EFD48425.1| sn-glycerol-3-phosphate transport membrane protein ABC transporter ugpA [Mycobacterium tuberculosis T17] Length=135 Score = 268 bits (684), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 134/135 (99%), Positives = 135/135 (100%), Gaps = 0/135 (0%) Query 169 MVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLS 228 MVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLS Sbjct 1 MVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLS 60 Query 229 ITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLA 288 ITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLA Sbjct 61 ITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLA 120 Query 289 VTYYQVRVMDRGQRQ 303 VTY+QVRVMDRGQRQ Sbjct 121 VTYHQVRVMDRGQRQ 135 >gi|148273424|ref|YP_001222985.1| putative glycerol ABC transporter permease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831354|emb|CAN02310.1| putative glycerol ABC transporter, permease component [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length=329 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/264 (53%), Positives = 180/264 (69%), Gaps = 1/264 (0%) Query 18 DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTR 77 D LF+ VGPNV LL +F Y+PL ++ S WN+ AR VGL+NY WF T Sbjct 44 DGLLFLAFVGPNVLLLAVFTYKPLLESFYYSTLQWNIGSSVAREVGLANYVAWFQDPQTP 103 Query 78 QIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFV 137 ++ T +FTG VVGSMVLGL +A++L+R +R R VR+ + AP+V+SG AVG +V Sbjct 104 TVIRVTLIFTGVTVVGSMVLGLGVAVMLNRRIRLRGPVRTIIVAPYVLSGVAVGFLWLYV 163 Query 138 FDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDL 197 FDP+FGLI L+ +G+ PD+Y D AL MVT VW++LGY +IYLA LQ V +DL Sbjct 164 FDPNFGLISAGLQFVGLPSPDWYSDPGAALAMVTTVQVWRDLGYCALIYLAGLQAVPKDL 223 Query 198 LEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTT 257 L+AA +DGA R F RV+LP L PTTFFLS+T L++SLQ FD+I+ MT+GGP GTTT Sbjct 224 LDAAALDGAGRVRTFLRVVLPLLSPTTFFLSVTTLLSSLQTFDLISAMTKGGPL-QGTTT 282 Query 258 MVYQVYVETFRNFRAGYGATVATI 281 M+YQ+Y E F RAGY + VATI Sbjct 283 MMYQIYHEGFVAGRAGYSSAVATI 306 >gi|170782751|ref|YP_001711085.1| putative integral membrane transport protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157321|emb|CAQ02508.1| putative integral membrane transport protein [Clavibacter michiganensis subsp. sepedonicus] Length=329 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 137/261 (53%), Positives = 178/261 (69%), Gaps = 1/261 (0%) Query 21 LFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIV 80 LF+ VGPNV LL +F Y+PL ++ S WN+ AR VGL+NY WF T ++ Sbjct 47 LFLAFVGPNVLLLAVFTYKPLLESFYYSTLQWNIGSSIAREVGLANYVAWFQDPQTPTVI 106 Query 81 FNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDP 140 T +FTG VVGSM LGL +A+LL+R +R R VR+ + AP+V+SG AVG +VFDP Sbjct 107 RVTLIFTGVTVVGSMALGLGVAVLLNRRIRLRGPVRTIIVAPYVLSGVAVGFLWLYVFDP 166 Query 141 HFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEA 200 +FGL+ L+ IG+ PD+Y D AL MVT VW++LGY +IYLA LQ V +DLL+A Sbjct 167 NFGLVSAGLQLIGLPSPDWYSDPAAALAMVTTVQVWRDLGYCALIYLAGLQAVPKDLLDA 226 Query 201 AEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVY 260 A +DGA R F RV+LP L PTTFFLS+T L++SLQ FD+I+ MT+GGP GTTTM+Y Sbjct 227 AALDGAGRIRTFLRVVLPLLSPTTFFLSVTTLLSSLQTFDLISAMTKGGPL-QGTTTMMY 285 Query 261 QVYVETFRNFRAGYGATVATI 281 Q++ E F RAGY + VATI Sbjct 286 QIFHEGFVAGRAGYSSAVATI 306 >gi|229819393|ref|YP_002880919.1| binding-protein-dependent transport systems inner membrane component [Beutenbergia cavernae DSM 12333] gi|229565306|gb|ACQ79157.1| binding-protein-dependent transport systems inner membrane component [Beutenbergia cavernae DSM 12333] Length=314 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/273 (52%), Positives = 189/273 (70%), Gaps = 1/273 (0%) Query 27 GPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQIVFNTAVF 86 GPNVALLLLFVYRPL + S WN+ ARFVG NY EWFT DT Q++ TA+F Sbjct 38 GPNVALLLLFVYRPLVLSFYYSMLQWNLGSNIARFVGFGNYVEWFTNPDTPQVLLTTAIF 97 Query 87 TGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVFDPHFGLIQ 146 V G +++GLALA+LL++ L GR + R+ FAP+V+SG AVG+ ++FDP GL+ Sbjct 98 AVTTVGGGLLIGLALALLLNQKLVGRGIARTFAFAPYVLSGIAVGMLWLYIFDPRNGLLS 157 Query 147 DLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGA 206 L GVG P +Y + WAL M+ I Y+WK++GY +IYLA LQ V +DL +AA +DGA Sbjct 158 VALGWFGVGSPQWYTTSPWALIMIIIVYLWKHIGYVALIYLAGLQAVPQDLRDAAALDGA 217 Query 207 SRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVET 266 R FR V+ P L P TFFL IT +++SLQ FD+I MT GGP G+ TTT++YQ+YVE Sbjct 218 GRSRTFRSVVFPLLGPVTFFLLITTMLSSLQSFDLIRAMTDGGPLGS-TTTLMYQIYVEG 276 Query 267 FRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 F+ RAGY + AT++F++LLA+T Q++V++R Sbjct 277 FQTGRAGYASASATVLFIILLAITGLQLKVLER 309 >gi|297154516|gb|ADI04228.1| binding-protein-dependent transport systems inner membrane component [Streptomyces bingchenggensis BCW-1] Length=304 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 136/282 (49%), Positives = 181/282 (65%), Gaps = 1/282 (0%) Query 18 DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTR 77 DY LF PN LLLF Y P+ N LS DW++ P+ FVGL NYT+ T D R Sbjct 19 DYLLFAAFAAPNFLFLLLFAYWPVVYNGYLSLTDWDMISPAKDFVGLGNYTDLLTDPDFR 78 Query 78 QIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFV 137 ++ T VF V G +VLGLA A+LL++ LRGRN+VR+ FAP+V+SGAAVG FV Sbjct 79 ATLWTTVVFVVGIVAGGIVLGLATALLLNQKLRGRNVVRTLTFAPYVLSGAAVGTLWLFV 138 Query 138 FDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDL 197 FDP++GLI+ L+ +G+ P D++WAL + + Y+WKN G+ V+YLA LQG+ R++ Sbjct 139 FDPNYGLIRPLMAPLGLTAPAMMTDSKWALTGLIVVYLWKNAGFVAVVYLAGLQGLPREV 198 Query 198 LEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTT 257 EAA +DGA W RR+ LP L P TFFL +T I++ Q FDV+ VMT GGP GT T+ Sbjct 199 YEAAALDGAGPWTRLRRITLPLLSPVTFFLLVTCTISTFQAFDVLAVMTGGGP-GTSTSI 257 Query 258 MVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 + + +Y + FR F AG A A IMF VLL +T Q R ++R Sbjct 258 LSWFIYDQGFRAFDAGRAAAGAMIMFAVLLLITAGQARYLER 299 >gi|269839321|ref|YP_003324013.1| binding-protein-dependent transporters inner membrane component [Thermobaculum terrenum ATCC BAA-798] gi|269791051|gb|ACZ43191.1| binding-protein-dependent transport systems inner membrane component [Thermobaculum terrenum ATCC BAA-798] Length=306 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 137/283 (49%), Positives = 187/283 (67%), Gaps = 1/283 (0%) Query 17 RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDT 76 R+Y +F+ V PN L ++F Y PL LS W++ P RFVGL NY F+ D Sbjct 20 REYLIFLAFVAPNFLLFIIFTYWPLVYQGYLSLVHWDMISPVKRFVGLENYAYLFSDPDF 79 Query 77 RQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQF 136 +++FNT FT A +VGS+ LGLALA+LL++ LRGRN R+ VFAP ++SGAAVGL + Sbjct 80 HRVMFNTLYFTVAVLVGSLALGLALALLLNQRLRGRNFARTVVFAPVILSGAAVGLVWAY 139 Query 137 VFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRD 196 +FDP++GL++ +L G+ D+ WA+ V I Y+WKNLGY+ +IYLA LQ + + Sbjct 140 IFDPNYGLMRTILGWFGLPPIDWLGSPAWAMPAVIIVYLWKNLGYSAMIYLAGLQNIPAE 199 Query 197 LLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTT 256 L EAA +DGA RW F V LPQL P TFFL +T +I+S+Q FD+I+VMT GGP G TT Sbjct 200 LYEAARVDGAGRWQQFLHVTLPQLSPVTFFLIVTTIISSVQAFDIISVMTDGGPVG-ATT 258 Query 257 TMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 T+++ +Y + FR FRAG A +MF++LL VT QV + R Sbjct 259 TLIWYMYEQGFRAFRAGIAAASGMLMFIILLVVTLVQVGWLQR 301 >gi|116671492|ref|YP_832425.1| binding-protein-dependent transport systems inner membrane component [Arthrobacter sp. FB24] gi|116611601|gb|ABK04325.1| carbohydrate ABC transporter membrane protein 1, CUT1 family [Arthrobacter sp. FB24] Length=316 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 133/295 (46%), Positives = 193/295 (66%), Gaps = 4/295 (1%) Query 6 RARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLS 65 R R + S RD+ +F+ L PN+ L+ +F Y PL +NI S DW + SA VGL Sbjct 20 RRRPKWSGRTRRDFFVFLALALPNLVLIGVFTYLPLINNIYYSTLDWTLGSASATVVGLD 79 Query 66 NYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVI 125 NY +FT SD +++ TAVFT V GSMVLGL +A+ L+ +RG RS VFAP+V+ Sbjct 80 NYVTFFTSSDAAKVLGTTAVFTVVTVGGSMVLGLLIALALNSKVRGTTFARSAVFAPYVL 139 Query 126 SGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVI 185 SG VGL F+FDP +G++ +LR +G P + D + +L MV I Y+WKNLGY V+ Sbjct 140 SGVGVGLVWLFIFDPGYGVLAWVLRGLGQQSPQWINDPQLSLVMVIIVYIWKNLGYCAVV 199 Query 186 YLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVM 245 YLA LQ + +D++EAA +DGA+ + F + +P L PTTFFL IT +++SLQ FD+I +M Sbjct 200 YLAGLQSLPQDVMEAASLDGANGFRRFLSMSVPLLSPTTFFLLITTMLSSLQAFDLIRIM 259 Query 246 TRGGPEGTGTTTMVYQVYVETFRNF-RAGYGATVATIMFLVLLAVTYYQVRVMDR 299 T P G GT+T++Y+ Y++ F F RAGY A+++ ++F +LL +T Q+R ++R Sbjct 260 T---PLGNGTSTLIYEAYLQAFGAFNRAGYSASISVVLFAILLIITVLQLRFVER 311 >gi|256833454|ref|YP_003162181.1| binding-protein-dependent transport systems inner membrane component [Jonesia denitrificans DSM 20603] gi|256686985|gb|ACV09878.1| binding-protein-dependent transport systems inner membrane component [Jonesia denitrificans DSM 20603] Length=311 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 135/272 (50%), Positives = 190/272 (70%), Gaps = 4/272 (1%) Query 8 RLRSSKERVR---DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGL 64 R R+S R R YA FV L GPNVALL++F Y+PL ++ R S WN+ P+ARFVGL Sbjct 14 RSRASLHRWRLWRQYAAFVALAGPNVALLVVFTYKPLVESFRYSTLQWNIGSPTARFVGL 73 Query 65 SNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFV 124 NY ++F+ T Q++ TAVFT V G++V GL LA+LL++ L GR + R+ FAP+V Sbjct 74 DNYVQFFSSPTTAQVLTTTAVFTVTTVGGALVAGLGLALLLNQRLLGRGIARTLSFAPYV 133 Query 125 ISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFV 184 +SG AVG+ ++FDP +GL+ +L +GV PD+Y + WAL M+ I Y+WK++GY + Sbjct 134 LSGIAVGILWLYIFDPRYGLLGTVLGWVGVSSPDWYNTSPWALIMIIIVYLWKHIGYVAL 193 Query 185 IYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINV 244 IYLA LQ + +++ +AA +DGA RW R ++LP L PTTFFL +T L+ SLQ FD+I+ Sbjct 194 IYLAGLQAIPQEVRDAAALDGAGRWRTLRSIVLPLLGPTTFFLLVTTLLASLQSFDLIHA 253 Query 245 MTRGGPEGTGTTTMVYQVYVETFRNFRAGYGA 276 MT+GGP G+ TTT++YQ+Y E+F N RAGY + Sbjct 254 MTQGGPLGS-TTTLMYQIYQESFVNGRAGYAS 284 >gi|119960992|ref|YP_948633.1| sn-glycerol-3-phosphate transport system permease protein [Arthrobacter aurescens TC1] gi|119947851|gb|ABM06762.1| sn-Glycerol-3-phosphate transport system permease protein [Arthrobacter aurescens TC1] Length=329 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/298 (45%), Positives = 192/298 (65%), Gaps = 6/298 (2%) Query 3 APQRARLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFV 62 P R R S++ R R++ +F+ + PN+ L+ F Y PL +NI S DW + SA V Sbjct 32 GPDRKRW-SARSR-REFLVFLAMALPNLVLIGTFTYWPLINNIYYSTLDWTLGSASATVV 89 Query 63 GLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAP 122 GL NY +FT D +++ TA+FT V GSMVLGL +A+ L+ +RG RS VFAP Sbjct 90 GLQNYVTFFTGEDASKVLGTTAIFTLVTVGGSMVLGLLVALALNSKVRGTTFARSAVFAP 149 Query 123 FVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYT 182 +V+SG VGL F+FDP +G++ +LR +G P + D + +L MV I YVWKNLGY Sbjct 150 YVLSGVGVGLVWLFIFDPGYGVLAWVLRGLGQESPQWINDPQLSLVMVIIVYVWKNLGYC 209 Query 183 FVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVI 242 V+YLA LQ + RD++EAA +DGA+ F + LP L PTTFFL IT +++SLQ FD+I Sbjct 210 AVVYLAGLQSLPRDVMEAAALDGANSARRFFNISLPLLSPTTFFLLITTMLSSLQAFDLI 269 Query 243 NVMTRGGPEGTGTTTMVYQVYVETFRNF-RAGYGATVATIMFLVLLAVTYYQVRVMDR 299 +MT P G GT+T++Y+ Y++ F + RAGY A ++ I+F +LL +T Q+R ++R Sbjct 270 RIMT---PLGNGTSTLIYEAYLQAFGAYNRAGYSAAISVILFAILLIITVLQLRFVER 324 >gi|163840864|ref|YP_001625269.1| SN-glycerol-3-phosphate transport system permease protein [Renibacterium salmoninarum ATCC 33209] gi|162954340|gb|ABY23855.1| SN-glycerol-3-phosphate transport system permease protein [Renibacterium salmoninarum ATCC 33209] Length=343 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/297 (44%), Positives = 190/297 (64%), Gaps = 5/297 (1%) Query 5 QRARLRSSKERV-RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVG 63 Q+ + R R RD +F+ PN+ L+ +F YRPL NI+ S DW + A +G Sbjct 45 QKIKRRYWTARTKRDAWIFLAFALPNIVLIAVFTYRPLIANIQYSMLDWTLGSDFATAIG 104 Query 64 LSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPF 123 L NY +F+ +D ++ TA+FT V GSMVLGL +A+ L + L GR RS +FAP+ Sbjct 105 LQNYITFFSSADAANVLGTTAIFTVFTVGGSMVLGLLIALALSQKLPGRTFARSAIFAPY 164 Query 124 VISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTF 183 V+SG VGL F+FDP +G++ +LR +G P + D + +L MV I YVWKNLGY Sbjct 165 VLSGVGVGLVWLFIFDPVYGVLSWVLRSLGQNSPQWINDPKLSLVMVIIVYVWKNLGYCA 224 Query 184 VIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVIN 243 V+YLA LQ + +D++EAA +DGAS F + LP L PTTFFL IT L++SLQ FD++ Sbjct 225 VVYLAGLQSMPKDVMEAASLDGASACRRFISISLPLLSPTTFFLLITSLLSSLQAFDILK 284 Query 244 VMTRGGPEGTGTTTMVYQVYVETFRNF-RAGYGATVATIMFLVLLAVTYYQVRVMDR 299 +MT P G GT T++++ Y++ F ++ +AGY A ++ ++F++LL +T Q+R ++R Sbjct 285 IMT---PTGQGTNTLMFETYLQAFGSYNKAGYSAAISVVLFVLLLIMTVVQMRFVER 338 >gi|220913406|ref|YP_002488715.1| sn-glycerol-3-phosphate ABC transporter permease [Arthrobacter chlorophenolicus A6] gi|219860284|gb|ACL40626.1| binding-protein-dependent transport systems inner membrane component [Arthrobacter chlorophenolicus A6] Length=320 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 123/283 (44%), Positives = 188/283 (67%), Gaps = 4/283 (1%) Query 18 DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTR 77 D+ +F+ L PN+ L+ F Y PL +NI S +W + SA VGL NY +FT +D Sbjct 36 DFFVFLALAFPNLLLIGTFTYLPLINNIYYSTLNWTLGSASATVVGLENYLTFFTSADAG 95 Query 78 QIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFV 137 +++ TA+FT V GSMVLGL +A+ L+ +RG R+ VFAP+V+SG VGL F+ Sbjct 96 KVLGTTAIFTATTVAGSMVLGLLVALALNSKVRGTTFARAAVFAPYVLSGVGVGLVWLFI 155 Query 138 FDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDL 197 FDP +G++ +LR +G P + D + +L MV + YVWKNLGY V++LA LQ + +D+ Sbjct 156 FDPGYGVLSWILRGLGQQSPQWINDPQLSLAMVILVYVWKNLGYCAVVFLAGLQSLPKDV 215 Query 198 LEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTT 257 +EAA +DGA R+ F + +P L PTTFFL IT +++SLQ FD+I +MT P G+GT+T Sbjct 216 MEAASLDGAGRFRRFASISIPLLSPTTFFLLITTMLSSLQAFDLIRIMT---PLGSGTST 272 Query 258 MVYQVYVETFRNF-RAGYGATVATIMFLVLLAVTYYQVRVMDR 299 ++Y+ Y++ F + RAGY A ++ ++F++LL +T Q+R +++ Sbjct 273 LIYEAYLQAFGAYNRAGYSAAISVVLFVILLVITVLQLRFVEK 315 >gi|257070085|ref|YP_003156340.1| carbohydrate ABC transporter membrane protein [Brachybacterium faecium DSM 4810] gi|256560903|gb|ACU86750.1| carbohydrate ABC transporter membrane protein [Brachybacterium faecium DSM 4810] Length=333 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 127/283 (45%), Positives = 189/283 (67%), Gaps = 4/283 (1%) Query 18 DYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTR 77 D +F+ L PN+ L+ +F YRPL NI+ S DW + +A F+GL NY E+FT + Sbjct 49 DALVFLALAAPNLVLIAMFTYRPLILNIQYSMLDWTLGSRTATFIGLDNYIEFFTSAAGL 108 Query 78 QIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFV 137 + + TA+FT V G+MVLGL +A+ L+ + GR + RS VFAP+V+SG VGL F+ Sbjct 109 ESLRITAIFTLLTVGGAMVLGLLIALALNIDIPGRTVARSAVFAPYVLSGVGVGLVWLFI 168 Query 138 FDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDL 197 FDP+FG++ +LR++G+G P ++ D +L MV I YVWKNLGY ++YL LQ + +D+ Sbjct 169 FDPNFGVLSWILRQLGLGSPQWFLDPDMSLVMVIIVYVWKNLGYCAIVYLGGLQSLSQDV 228 Query 198 LEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTT 257 ++AAE+DGA F V LP L PTTFFL IT +NSLQ FD++ +MT P G GT T Sbjct 229 MQAAELDGAGAVRRFVSVALPLLSPTTFFLLITTTLNSLQAFDLLRIMT---PTGRGTNT 285 Query 258 MVYQVYVETFRNF-RAGYGATVATIMFLVLLAVTYYQVRVMDR 299 M+++ Y++ F + RAGY AT++ ++F++L+ +T Q+ ++R Sbjct 286 MIFESYLQAFGGYSRAGYSATISVLLFVILIVMTVAQILFVER 328 >gi|229820021|ref|YP_002881547.1| binding-protein-dependent transport systems inner membrane component [Beutenbergia cavernae DSM 12333] gi|229565934|gb|ACQ79785.1| binding-protein-dependent transport systems inner membrane component [Beutenbergia cavernae DSM 12333] Length=318 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 182/300 (61%), Gaps = 2/300 (0%) Query 1 MAAPQRARLRSSKERVRDYAL-FVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSA 59 +AAP R R+ + R AL F L+ PN+A +L+F Y P N+ LSF DW++ + Sbjct 15 VAAPSRPVTRNRRRSNRREALLFGALILPNLAAILVFSYYPTIYNVVLSFMDWDMVAAAP 74 Query 60 RFVGLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTV 119 ++GL+NY + FT D ++ NTA+FTG AVVGS+ GLA+ LL + L+ R+ Sbjct 75 EWIGLANYQDLFTSDDFYTVLGNTAIFTGVAVVGSLAGGLAIGQLLSQRLKFSGFTRTMA 134 Query 120 FAPFVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNL 179 FAP ++ GAAVG+ F+FDP +GL + G+ P + + W+++ +TI Y W+ L Sbjct 135 FAPHMLPGAAVGILWLFMFDPTYGLSRWFFGLFGLTSPSWTTTSDWSIWAITIAYTWQRL 194 Query 180 GYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVF 239 G+ +IY A+Q + RD+ EAAE+DGA + +F + P L P TFFL++T +I++ Q F Sbjct 195 GFVAIIYYTAIQDLPRDVYEAAELDGARGFGLFWSITRPLLSPVTFFLTVTGIISAAQAF 254 Query 240 DVINVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 D+I +T GGP G + T+ + VY E F+ F G A AT++FLVLL VT Q R R Sbjct 255 DIIATLTGGGP-GNSSATLTWMVYEEAFQRFDVGTSAAAATVLFLVLLGVTIVQTRTAGR 313 >gi|221635672|ref|YP_002523548.1| sn-glycerol-3-phosphate transport system permease protein UgpA [Thermomicrobium roseum DSM 5159] gi|221158123|gb|ACM07241.1| sn-glycerol-3-phosphate transport system permease protein UgpA [Thermomicrobium roseum DSM 5159] Length=332 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 124/292 (43%), Positives = 181/292 (62%), Gaps = 1/292 (0%) Query 8 RLRSSKERVRDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNY 67 RL ++ + ++ LF +LV PN+ LL++F Y PL N LS W++ P FVGL NY Sbjct 37 RLERLRQAIDEWPLFWLLVAPNLILLVVFTYWPLVYNAYLSLMQWDLISPVKIFVGLENY 96 Query 68 TEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISG 127 S+ R++V NT VFT V G+M+LGLA A++LD+PLRG L R VFAP+V+SG Sbjct 97 RFLLEDSEFREVVRNTVVFTLGTVGGTMLLGLAFALVLDQPLRGLALARGVVFAPYVLSG 156 Query 128 AAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYL 187 AAV + + +P FGL+ + +G PD+ R A+ V + YVWKN+G++ ++YL Sbjct 157 AAVAVFWVNMLNPRFGLVAQVASWLGTVSPDWLNHPRLAMVAVILVYVWKNVGFSTIVYL 216 Query 188 AALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTR 247 A LQ + ++L EAA +DGA W FR + LPQL P T FL + I S Q FD+I V+T Sbjct 217 AGLQRIPQELYEAATVDGAGVWQRFRSITLPQLGPITLFLLVVSTIASFQAFDLIRVLTD 276 Query 248 GGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 GGP TTT+++ ++ + F F AG A A ++F +L +++ QVR+ +R Sbjct 277 GGPV-NATTTLLFYIWEQGFVAFNAGRAAAAAVVLFALLAVISWLQVRLGER 327 >gi|229819998|ref|YP_002881524.1| binding-protein-dependent transport systems inner membrane component [Beutenbergia cavernae DSM 12333] gi|229565911|gb|ACQ79762.1| binding-protein-dependent transport systems inner membrane component [Beutenbergia cavernae DSM 12333] Length=319 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 126/275 (46%), Positives = 179/275 (66%), Gaps = 1/275 (0%) Query 19 YALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFVGLSNYTEWFTRSDTRQ 78 YALF +L+ PN L+L F Y P+ N LS WN+ + ++VG +NY + T + + Sbjct 35 YALFALLIFPNAVLILTFEYWPVLYNAFLSMTSWNMISGTPQWVGFANYVDLLTSPNFHR 94 Query 79 IVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAPFVISGAAVGLAAQFVF 138 ++ NTAVFTGA V+GS+VLGL LA+L ++ L R +VR+ F+P+VISGAAV F+F Sbjct 95 VLLNTAVFTGAVVIGSVVLGLLLALLFNQKLHLRGVVRTAAFSPYVISGAAVATLWLFLF 154 Query 139 DPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGVRRDLL 198 DP++GL + L +G P + DA+WA+ + I Y+WK +G+ +IYLA LQG+ + Sbjct 155 DPNYGLSRLLFSLVGADSPRWVTDAQWAMPALIIAYLWKGMGFVAIIYLAGLQGLPEEYD 214 Query 199 EAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTM 258 EAA IDGA RWA+FRR+ LP L P TFF+ + +I + Q +D+I VMT GGP G TTT+ Sbjct 215 EAARIDGAGRWAIFRRITLPLLSPVTFFVMVITIIGTFQAYDLIAVMTGGGP-GIATTTL 273 Query 259 VYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQ 293 + +Y F+ AG A A I+F++LLAVT Q Sbjct 274 SWFIYERAFKASDAGGAAAAAMILFVILLAVTALQ 308 >gi|163846844|ref|YP_001634888.1| binding-protein-dependent transport systems inner membrane component [Chloroflexus aurantiacus J-10-fl] gi|222524665|ref|YP_002569136.1| binding-protein-dependent transport systems inner membrane component [Chloroflexus sp. Y-400-fl] gi|163668133|gb|ABY34499.1| binding-protein-dependent transport systems inner membrane component [Chloroflexus aurantiacus J-10-fl] gi|222448544|gb|ACM52810.1| binding-protein-dependent transport systems inner membrane component [Chloroflexus sp. Y-400-fl] Length=306 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 130/297 (44%), Positives = 186/297 (63%), Gaps = 2/297 (0%) Query 4 PQRARLRSSKERV-RDYALFVVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSARFV 62 P++ R ++ R R++ LF + +GPN+ L +F Y PL N+ LS W+ P+ FV Sbjct 6 PKQERHPNTLRREHREWLLFALFIGPNLFLFTIFTYWPLIYNVYLSMVRWDFLRPTMPFV 65 Query 63 GLSNYTEWFTRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFAP 122 GL NY F+ I++ TA FT +V ++VLGL LA+LL++PLR RN R+ VFAP Sbjct 66 GLQNYIAAFSDLRFWNIIWQTATFTVWSVGLTLVLGLLLALLLNQPLRYRNTARAVVFAP 125 Query 123 FVISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYT 182 VISGA V + ++FDP +GLI LL G+ P++ D+ WA+ V I YVWKN+GY Sbjct 126 VVISGAVVAVVWSYIFDPRYGLIDQLLGFFGLDSPNWLADSFWAMPAVIIVYVWKNIGYA 185 Query 183 FVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVI 242 VIYLA LQ + R+L +AA +DGA W F V LP L P FFLS+T ++ Q FD+I Sbjct 186 VVIYLAGLQNIPRELYDAARVDGAGAWERFWNVTLPGLSPVAFFLSVTSVLTCFQAFDII 245 Query 243 NVMTRGGPEGTGTTTMVYQVYVETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDR 299 V+T GGP TTT+++ +Y F ++ AG VA ++FL++LA+T Q+R ++R Sbjct 246 RVLTDGGP-ADATTTLIFHLYELGFVSYDAGKAGVVAVVLFLIMLALTIVQIRYLER 301 Lambda K H 0.330 0.142 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 508884486504 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40