BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2836c Length=439 Score E Sequences producing significant alignments: (Bits) Value gi|15609973|ref|NP_217352.1| DNA-damage-inducible protein F [Myc... 809 0.0 gi|254232931|ref|ZP_04926258.1| DNA-damage-inducible protein F d... 807 0.0 gi|340627829|ref|YP_004746281.1| putative DNA-damage-inducible p... 806 0.0 gi|289575537|ref|ZP_06455764.1| DNA-damage-inducible protein F d... 805 0.0 gi|31794013|ref|NP_856506.1| DNA-damage-inducible protein F [Myc... 804 0.0 gi|121638716|ref|YP_978940.1| putative DNA-damage-inducible prot... 803 0.0 gi|15842377|ref|NP_337414.1| DNA-damage-inducible protein F, put... 802 0.0 gi|240171289|ref|ZP_04749948.1| DNA-damage-inducible protein F D... 599 3e-169 gi|254823211|ref|ZP_05228212.1| DNA-damage-inducible protein F D... 588 9e-166 gi|254551900|ref|ZP_05142347.1| DNA-damage-inducible protein F d... 587 2e-165 gi|315444948|ref|YP_004077827.1| efflux protein, MATE family [My... 585 7e-165 gi|145224616|ref|YP_001135294.1| MATE efflux family protein [Myc... 584 1e-164 gi|108799052|ref|YP_639249.1| MATE efflux family protein [Mycoba... 575 4e-162 gi|183981910|ref|YP_001850201.1| DNA-damage-inducible protein F ... 570 1e-160 gi|118617685|ref|YP_906017.1| DNA-damage-inducible protein F Din... 567 1e-159 gi|118469333|ref|YP_886968.1| MATE efflux family protein [Mycoba... 562 4e-158 gi|120403308|ref|YP_953137.1| MATE efflux family protein [Mycoba... 554 1e-155 gi|229490921|ref|ZP_04384756.1| mate efflux family protein [Rhod... 509 3e-142 gi|226306123|ref|YP_002766083.1| hypothetical protein RER_26360 ... 508 9e-142 gi|169630210|ref|YP_001703859.1| DNA-damage-inducible protein F ... 496 3e-138 gi|333991200|ref|YP_004523814.1| DNA-damage-inducible protein F ... 489 3e-136 gi|111023607|ref|YP_706579.1| DNA-damage-inducible protein F ( m... 471 1e-130 gi|312139333|ref|YP_004006669.1| multi antimicrobial extrusion f... 454 1e-125 gi|325672788|ref|ZP_08152484.1| MATE efflux family protein [Rhod... 454 1e-125 gi|54026033|ref|YP_120275.1| putative DNA-damage-inducible prote... 451 1e-124 gi|300788172|ref|YP_003768463.1| DNA-damage-inducible protein F ... 450 2e-124 gi|340529757|gb|AEK44962.1| DNA-damage-inducible protein F [Amyc... 450 2e-124 gi|257055497|ref|YP_003133329.1| putative efflux protein, MATE f... 448 7e-124 gi|134102368|ref|YP_001108029.1| DNA-damage-inducible protein F ... 448 7e-124 gi|226366096|ref|YP_002783879.1| MatE family protein [Rhodococcu... 448 9e-124 gi|291009318|ref|ZP_06567291.1| DNA-damage-inducible protein F [... 444 1e-122 gi|296139433|ref|YP_003646676.1| MATE efflux family protein [Tsu... 442 6e-122 gi|256379827|ref|YP_003103487.1| MATE efflux family protein [Act... 436 4e-120 gi|262202089|ref|YP_003273297.1| MATE efflux family protein [Gor... 431 1e-118 gi|333919296|ref|YP_004492877.1| Mate efflux family protein [Amy... 431 1e-118 gi|302528533|ref|ZP_07280875.1| DNA-damage-inducible protein F [... 430 2e-118 gi|326382944|ref|ZP_08204634.1| MATE efflux family protein [Gord... 427 1e-117 gi|335423935|ref|ZP_08552953.1| putative efflux protein, MATE fa... 426 5e-117 gi|331698430|ref|YP_004334669.1| MATE efflux family protein [Pse... 422 7e-116 gi|325003067|ref|ZP_08124179.1| MATE efflux family protein [Pseu... 409 3e-112 gi|343927050|ref|ZP_08766538.1| hypothetical protein GOALK_077_0... 374 2e-101 gi|227833351|ref|YP_002835058.1| DNA-damage-inducible protein F ... 372 6e-101 gi|311739674|ref|ZP_07713509.1| MATE efflux family protein [Cory... 370 2e-100 gi|255325202|ref|ZP_05366308.1| Na+-driven multidrug efflux pump... 370 2e-100 gi|172040533|ref|YP_001800247.1| DNA-damage-inducible protein F ... 367 2e-99 gi|237785722|ref|YP_002906427.1| DNA-damage-inducible protein F ... 366 4e-99 gi|227504831|ref|ZP_03934880.1| DNA-damage-inducible protein F [... 366 5e-99 gi|306836344|ref|ZP_07469323.1| MATE efflux family protein [Cory... 364 2e-98 gi|334563204|ref|ZP_08516195.1| DNA-damage-inducible protein F [... 362 8e-98 gi|227503413|ref|ZP_03933462.1| DNA-damage-inducible protein F [... 362 8e-98 >gi|15609973|ref|NP_217352.1| DNA-damage-inducible protein F [Mycobacterium tuberculosis H37Rv] gi|148662677|ref|YP_001284200.1| putative DNA-damage-inducible protein F [Mycobacterium tuberculosis H37Ra] gi|253798078|ref|YP_003031079.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis KZN 1435] 49 more sequence titles Length=439 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/439 (99%), Positives = 439/439 (100%), Gaps = 0/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +SQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG Sbjct 1 MSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA Sbjct 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL Sbjct 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV Sbjct 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD Sbjct 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF Sbjct 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR Sbjct 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTGAA 439 LIFVGWRAYSGRWAVTGAA Sbjct 421 LIFVGWRAYSGRWAVTGAA 439 >gi|254232931|ref|ZP_04926258.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis C] gi|124601990|gb|EAY61000.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis C] Length=439 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/439 (99%), Positives = 438/439 (99%), Gaps = 0/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +SQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG Sbjct 1 MSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA Sbjct 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL Sbjct 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VYGWL LPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV Sbjct 181 VYGWLELPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD Sbjct 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF Sbjct 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR Sbjct 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTGAA 439 LIFVGWRAYSGRWAVTGAA Sbjct 421 LIFVGWRAYSGRWAVTGAA 439 >gi|340627829|ref|YP_004746281.1| putative DNA-damage-inducible protein F DINF [Mycobacterium canettii CIPT 140010059] gi|340006019|emb|CCC45189.1| putative DNA-damage-inducible protein F DINF [Mycobacterium canettii CIPT 140010059] Length=439 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/439 (99%), Positives = 438/439 (99%), Gaps = 0/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +SQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG Sbjct 1 MSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA Sbjct 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL Sbjct 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 V+GWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV Sbjct 181 VHGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD Sbjct 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMV QLPF Sbjct 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVAQLPF 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR Sbjct 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTGAA 439 LIFVGWRAYSGRWAVTGAA Sbjct 421 LIFVGWRAYSGRWAVTGAA 439 >gi|289575537|ref|ZP_06455764.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis K85] gi|289539968|gb|EFD44546.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis K85] Length=439 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/439 (99%), Positives = 438/439 (99%), Gaps = 0/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +SQVGHRAGGRQIAQLALPALGVLAA+PLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG Sbjct 1 MSQVGHRAGGRQIAQLALPALGVLAAKPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA Sbjct 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGF SSALLCPLL Sbjct 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFESSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV Sbjct 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD Sbjct 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF Sbjct 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR Sbjct 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTGAA 439 LIFVGWRAYSGRWAVTGAA Sbjct 421 LIFVGWRAYSGRWAVTGAA 439 >gi|31794013|ref|NP_856506.1| DNA-damage-inducible protein F [Mycobacterium bovis AF2122/97] gi|31619607|emb|CAD95046.1| POSSIBLE DNA-DAMAGE-INDUCIBLE PROTEIN F DINF [Mycobacterium bovis AF2122/97] Length=439 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/439 (99%), Positives = 438/439 (99%), Gaps = 0/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +SQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG Sbjct 1 MSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA Sbjct 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL Sbjct 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV Sbjct 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD Sbjct 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGV WWFMVVQLPF Sbjct 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVLWWFMVVQLPF 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR Sbjct 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTGAA 439 LIFVGWRAYSGRWAVTGAA Sbjct 421 LIFVGWRAYSGRWAVTGAA 439 >gi|121638716|ref|YP_978940.1| putative DNA-damage-inducible protein F dinF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991208|ref|YP_002645897.1| putative DNA-damage-inducible protein F [Mycobacterium bovis BCG str. Tokyo 172] gi|121494364|emb|CAL72845.1| Possible dna-damage-inducible protein F dinF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774323|dbj|BAH27129.1| putative DNA-damage-inducible protein F [Mycobacterium bovis BCG str. Tokyo 172] gi|341602754|emb|CCC65432.1| possible dna-damage-inducible protein F dinF [Mycobacterium bovis BCG str. Moreau RDJ] Length=439 Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/439 (99%), Positives = 437/439 (99%), Gaps = 0/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +SQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG Sbjct 1 MSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA Sbjct 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGV DTVRPLRYVVAGFGSSALLCPLL Sbjct 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVHDTVRPLRYVVAGFGSSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV Sbjct 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD Sbjct 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGV WWFMVVQLPF Sbjct 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVLWWFMVVQLPF 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR Sbjct 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTGAA 439 LIFVGWRAYSGRWAVTGAA Sbjct 421 LIFVGWRAYSGRWAVTGAA 439 >gi|15842377|ref|NP_337414.1| DNA-damage-inducible protein F, putative [Mycobacterium tuberculosis CDC1551] gi|148824026|ref|YP_001288780.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis F11] gi|167968169|ref|ZP_02550446.1| putative DNA-damage-inducible protein F [Mycobacterium tuberculosis H37Ra] 10 more sequence titles Length=436 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/436 (99%), Positives = 436/436 (100%), Gaps = 0/436 (0%) Query 4 VGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQA 63 +GHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQA Sbjct 1 MGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQA 60 Query 64 TFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGD 123 TFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGD Sbjct 61 TFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGD 120 Query 124 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG 183 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG Sbjct 121 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG 180 Query 184 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL 243 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL Sbjct 181 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL 240 Query 244 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH 303 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH Sbjct 241 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH 300 Query 304 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI 363 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI Sbjct 301 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI 360 Query 364 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF 423 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF Sbjct 361 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF 420 Query 424 VGWRAYSGRWAVTGAA 439 VGWRAYSGRWAVTGAA Sbjct 421 VGWRAYSGRWAVTGAA 436 >gi|240171289|ref|ZP_04749948.1| DNA-damage-inducible protein F DinF [Mycobacterium kansasii ATCC 12478] Length=417 Score = 599 bits (1545), Expect = 3e-169, Method: Compositional matrix adjust. Identities = 351/417 (85%), Positives = 375/417 (90%), Gaps = 0/417 (0%) Query 23 VLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGTTARAARRYGAGN 82 +LAAEPLYLLFD AVVGRLGA+SLAGLAIGSLVLGLVGSQATFLSYGTTAR+AR +GAG+ Sbjct 1 MLAAEPLYLLFDTAVVGRLGALSLAGLAIGSLVLGLVGSQATFLSYGTTARSARHFGAGD 60 Query 83 RVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAALPWLRIAILGTPA 142 R AAV EGVQATWLA GLG +VVVEA A PLVSAIA IT AALPWLRIAILG PA Sbjct 61 RAAAVVEGVQATWLAAGLGVATIVVVEAAAVPLVSAIAGSSAITEAALPWLRIAILGVPA 120 Query 143 ILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRWGLTGSAVANLVG 202 ILVSLAGNGW+RGVQDT+RPLRYVVAGFG SALLCPLLVYGWLG+PR GL+GSAVANLVG Sbjct 121 ILVSLAGNGWMRGVQDTMRPLRYVVAGFGLSALLCPLLVYGWLGMPRLGLSGSAVANLVG 180 Query 203 QWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQVCYVSAAAVAARFGAA 262 QWLAALLF GALLAERV LR D VL AQL+MARDLIVR LAFQ C+VSAAAVAARFGAA Sbjct 181 QWLAALLFGGALLAERVLLRVDWPVLRAQLVMARDLIVRGLAFQACFVSAAAVAARFGAA 240 Query 263 ALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWRVTAFSLLAAGIL 322 ALAAHQVVLQLWG LALVLDSLAIAAQ+LVGAALGAGD HAK+VAWRVT FSLLAAG+L Sbjct 241 ALAAHQVVLQLWGFLALVLDSLAIAAQALVGAALGAGDVSHAKSVAWRVTVFSLLAAGVL 300 Query 323 AAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDGVLLGAGDAAFMRT 382 AAALG+G+ +LP LFT DRSVLAAI VPWWF+V QLPFAGIVFA+DGVLLGAGDAAFMRT Sbjct 301 AAALGVGAPLLPSLFTHDRSVLAAIAVPWWFLVAQLPFAGIVFALDGVLLGAGDAAFMRT 360 Query 383 ATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAYSGRWAVTGAA 439 ATV SAL+GFLPL WLSL YGWGLAGIWSGL TF+ LRL+FVGWR SGRWA+TGAA Sbjct 361 ATVVSALIGFLPLTWLSLVYGWGLAGIWSGLATFVALRLLFVGWRTISGRWALTGAA 417 >gi|254823211|ref|ZP_05228212.1| DNA-damage-inducible protein F DinF [Mycobacterium intracellulare ATCC 13950] Length=444 Score = 588 bits (1515), Expect = 9e-166, Method: Compositional matrix adjust. Identities = 349/433 (81%), Positives = 377/433 (88%), Gaps = 4/433 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AGGR+IA LALPALGVLAAEPLYLLFD AVVGRLGA+SLAGLAIG L+L LVGS TFLS Sbjct 9 AGGRRIAGLALPALGVLAAEPLYLLFDTAVVGRLGALSLAGLAIGGLLLSLVGSDLTFLS 68 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASG----D 123 YGTTAR+AR +GAGNR +AVTEGVQATWLALGLGALVV+ V+A A PLVS I G + Sbjct 69 YGTTARSARHFGAGNRSSAVTEGVQATWLALGLGALVVIAVQAAAVPLVSVIVGGKVGGE 128 Query 124 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG 183 I AAALPWLRIAI G PAILVSLAGNGW+RGVQDTVRPLRYVVAGFG SALLCPLLVYG Sbjct 129 AIAAAALPWLRIAIFGAPAILVSLAGNGWMRGVQDTVRPLRYVVAGFGLSALLCPLLVYG 188 Query 184 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL 243 WLGLPR GL GSAVANL GQWLAA+LF ALLAER LR DRAVL AQL+M RDL+VRTL Sbjct 189 WLGLPRLGLAGSAVANLAGQWLAAVLFGRALLAERAPLRLDRAVLRAQLVMGRDLVVRTL 248 Query 244 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH 303 AFQ C+VSA AVAARFGA+ALAAHQVVLQLW LALVLDSLAIAAQ+LVGAALGAGDA H Sbjct 249 AFQACFVSAGAVAARFGASALAAHQVVLQLWEFLALVLDSLAIAAQALVGAALGAGDAAH 308 Query 304 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI 363 AK+VA RVT FS AA +LAA +G S LP LFTDDRSVLAAIGVPWWF+V QLPFAG+ Sbjct 309 AKSVARRVTLFSAAAAALLAALCAVGFSALPRLFTDDRSVLAAIGVPWWFLVAQLPFAGM 368 Query 364 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF 423 VFA+DGVLLGAGDAAFMRTATV SALVGFLPL+WLSL +GWGLAGIW+GL TF++LRL+F Sbjct 369 VFALDGVLLGAGDAAFMRTATVISALVGFLPLIWLSLVFGWGLAGIWTGLTTFVLLRLVF 428 Query 424 VGWRAYSGRWAVT 436 VG RA SGRWA T Sbjct 429 VGARAISGRWAAT 441 >gi|254551900|ref|ZP_05142347.1| DNA-damage-inducible protein F dinF [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=316 Score = 587 bits (1512), Expect = 2e-165, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 124 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG 183 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG Sbjct 1 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG 60 Query 184 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL 243 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL Sbjct 61 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL 120 Query 244 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH 303 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH Sbjct 121 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH 180 Query 304 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI 363 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI Sbjct 181 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI 240 Query 364 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF 423 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF Sbjct 241 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF 300 Query 424 VGWRAYSGRWAVTGAA 439 VGWRAYSGRWAVTGAA Sbjct 301 VGWRAYSGRWAVTGAA 316 >gi|315444948|ref|YP_004077827.1| efflux protein, MATE family [Mycobacterium sp. Spyr1] gi|315263251|gb|ADT99992.1| putative efflux protein, MATE family [Mycobacterium sp. Spyr1] Length=439 Score = 585 bits (1507), Expect = 7e-165, Method: Compositional matrix adjust. Identities = 312/430 (73%), Positives = 361/430 (84%), Gaps = 0/430 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 A GR+IA LA PALGVLAAEP+YLLFD+A+VGRLGA+SLAGLAIG+L++G++ SQ TFLS Sbjct 8 ATGRRIAGLAFPALGVLAAEPVYLLFDLAIVGRLGALSLAGLAIGALIMGVLSSQLTFLS 67 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITA 127 YGTTARAAR YGAG+R AAV EGVQATWLA+G+G ++V V+ TA PLVSA+A+G I Sbjct 68 YGTTARAARFYGAGDRNAAVEEGVQATWLAVGIGTVIVAAVQVTAVPLVSALAAGGEIAE 127 Query 128 AALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGL 187 ALPW+RIA L PAIL++ AGNGW+RGVQDT+RPLRYVV GFG SA+LCPLLV+GWLG Sbjct 128 TALPWVRIASLAVPAILIAAAGNGWMRGVQDTMRPLRYVVVGFGLSAVLCPLLVFGWLGC 187 Query 188 PRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQV 247 P GL GSAVAN+ GQ+LAA LF AL E+V LR AVL AQ++M RDLI+RT+AFQ Sbjct 188 PELGLPGSAVANVAGQYLAAALFCRALFVEKVPLRVRPAVLRAQVVMGRDLILRTMAFQA 247 Query 248 CYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAV 307 C++SA AVAARFGAA++AAHQVVLQLW LALVLDSLAIAAQSLVGAALGAG HAKAV Sbjct 248 CFISAGAVAARFGAASVAAHQVVLQLWSFLALVLDSLAIAAQSLVGAALGAGQLTHAKAV 307 Query 308 AWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 AWRVT FS +A +LA LGS ++P +FTDD+SVL IGVPWWF+V QLP AGIVFA+ Sbjct 308 AWRVTIFSAVAGVVLAVVFALGSQLIPSVFTDDQSVLDRIGVPWWFLVAQLPVAGIVFAI 367 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DGVLLGAGDA FMR AT+ASAL GFLPLVWLSLA+GWGL GIW+GL TF+VLRL+FVGWR Sbjct 368 DGVLLGAGDATFMRNATLASALAGFLPLVWLSLAFGWGLLGIWAGLSTFMVLRLVFVGWR 427 Query 428 AYSGRWAVTG 437 A SGRW V G Sbjct 428 ALSGRWLVPG 437 >gi|145224616|ref|YP_001135294.1| MATE efflux family protein [Mycobacterium gilvum PYR-GCK] gi|145217102|gb|ABP46506.1| MATE efflux family protein [Mycobacterium gilvum PYR-GCK] Length=439 Score = 584 bits (1505), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 312/430 (73%), Positives = 360/430 (84%), Gaps = 0/430 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 A GR+IA LA PALGVLAAEP+YLLFD+A+VGRLGA+SLAGLAIG+L++G++ SQ TFLS Sbjct 8 ATGRRIAGLAFPALGVLAAEPVYLLFDLAIVGRLGALSLAGLAIGALIMGVLSSQLTFLS 67 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITA 127 YGTTARAAR YGAG+R AAV EGVQATWLA+G+G ++V V+ TA PLVSA+A+G I Sbjct 68 YGTTARAARFYGAGDRNAAVEEGVQATWLAVGIGTVIVAAVQVTAVPLVSALAAGGEIAE 127 Query 128 AALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGL 187 ALPW+RIA L PAIL++ AGNGW+RGVQDT+RPLRYVV GFG SA+LCPLLV+GWLG Sbjct 128 TALPWVRIASLAVPAILIAAAGNGWMRGVQDTMRPLRYVVVGFGLSAVLCPLLVFGWLGC 187 Query 188 PRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQV 247 P GL GSAVAN+ GQ+LAA LF AL E+V LR AVL AQ++M RDLI+RT+AFQ Sbjct 188 PELGLPGSAVANVAGQYLAAALFCRALFVEKVPLRVRPAVLRAQVVMGRDLILRTMAFQA 247 Query 248 CYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAV 307 C++SA AVAARFGAA++AAHQVVLQLW LALVLDSLAIAAQSLVGAALGAG HAKAV Sbjct 248 CFISAGAVAARFGAASVAAHQVVLQLWSFLALVLDSLAIAAQSLVGAALGAGQLTHAKAV 307 Query 308 AWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 AWRVT FS +A +LA LGS ++P FTDD+SVL IGVPWWF+V QLP AGIVFA+ Sbjct 308 AWRVTIFSAVAGVVLAVVFALGSQLIPSAFTDDQSVLDRIGVPWWFLVAQLPVAGIVFAI 367 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DGVLLGAGDA FMR AT+ASAL GFLPLVWLSLA+GWGL GIW+GL TF+VLRL+FVGWR Sbjct 368 DGVLLGAGDATFMRNATLASALAGFLPLVWLSLAFGWGLLGIWAGLSTFMVLRLVFVGWR 427 Query 428 AYSGRWAVTG 437 A SGRW V G Sbjct 428 ALSGRWLVPG 437 >gi|108799052|ref|YP_639249.1| MATE efflux family protein [Mycobacterium sp. MCS] gi|119868167|ref|YP_938119.1| MATE efflux family protein [Mycobacterium sp. KMS] gi|126434655|ref|YP_001070346.1| MATE efflux family protein [Mycobacterium sp. JLS] gi|108769471|gb|ABG08193.1| MATE efflux family protein [Mycobacterium sp. MCS] gi|119694256|gb|ABL91329.1| MATE efflux family protein [Mycobacterium sp. KMS] gi|126234455|gb|ABN97855.1| MATE efflux family protein [Mycobacterium sp. JLS] Length=444 Score = 575 bits (1483), Expect = 4e-162, Method: Compositional matrix adjust. Identities = 324/434 (75%), Positives = 368/434 (85%), Gaps = 0/434 (0%) Query 6 HRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATF 65 A R+IA LA PALGVLAAEP+YLLFD+AVVGRLGA+SLAGLAIG+LV+G++ +Q TF Sbjct 11 EPATSRRIAALAFPALGVLAAEPIYLLFDLAVVGRLGALSLAGLAIGALVMGVLSAQLTF 70 Query 66 LSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGI 125 LSYGTTARAAR YGAGNR AAV EGVQATWLAL +G +VV V+ATA PLVSA+A+G I Sbjct 71 LSYGTTARAARFYGAGNRTAAVGEGVQATWLALAIGTTIVVAVQATAVPLVSALAAGGEI 130 Query 126 TAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWL 185 ALPW+RIA L PAILV+ AGNGW+RGVQDTVRPLRYVV GF SA+LCPLLVYGWL Sbjct 131 AETALPWVRIASLAVPAILVAAAGNGWMRGVQDTVRPLRYVVFGFAVSAVLCPLLVYGWL 190 Query 186 GLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAF 245 G PR GL GSAVANLVGQWLAA+LF AL+ ERV LR +VL AQ++M RDL++RT+AF Sbjct 191 GAPRMGLEGSAVANLVGQWLAAILFCRALIVERVPLRLQPSVLRAQVVMGRDLVLRTVAF 250 Query 246 QVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAK 305 Q C+VSA AVAARFGAAA+AAHQVVLQLW LALVLDSLAIAAQSLVGAALGAG HAK Sbjct 251 QACFVSAGAVAARFGAAAVAAHQVVLQLWNFLALVLDSLAIAAQSLVGAALGAGHLPHAK 310 Query 306 AVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVF 365 +VAWRVT FS +AAG+LA +GSSVLPG+FTDDR+VL IGVPWWF+V QLP AG+VF Sbjct 311 SVAWRVTVFSTVAAGLLALVFAVGSSVLPGVFTDDRTVLDEIGVPWWFLVGQLPVAGVVF 370 Query 366 AVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVG 425 A+DGVLLGAGDA FMR AT+ SALVGFLPL+WLSLA+GWGL GIW+GL TF+VLRL+FVG Sbjct 371 ALDGVLLGAGDAKFMRNATLISALVGFLPLIWLSLAFGWGLLGIWAGLSTFMVLRLVFVG 430 Query 426 WRAYSGRWAVTGAA 439 WRA SGRW V G + Sbjct 431 WRALSGRWLVPGTS 444 >gi|183981910|ref|YP_001850201.1| DNA-damage-inducible protein F DinF [Mycobacterium marinum M] gi|183175236|gb|ACC40346.1| DNA-damage-inducible protein F DinF [Mycobacterium marinum M] Length=445 Score = 570 bits (1470), Expect = 1e-160, Method: Compositional matrix adjust. Identities = 366/437 (84%), Positives = 391/437 (90%), Gaps = 6/437 (1%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AGGR+IA LALPALGVLAAEPLYLLFD AV+GRLGA++LAGLAIGSLVLGLVGSQATFLS Sbjct 10 AGGRKIAALALPALGVLAAEPLYLLFDTAVIGRLGALALAGLAIGSLVLGLVGSQATFLS 69 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA-----SG 122 YGTTAR+AR YGAG+RVAAV EGVQATWLA+ LG L ++VV+ A PLVS IA SG Sbjct 70 YGTTARSARHYGAGDRVAAVAEGVQATWLAVALGLLTILVVQIAAVPLVSVIAGARAGSG 129 Query 123 DGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVY 182 D I AALPWLRIAILGTPAIL+SLAGNGW+RGVQDTVRPLRYVVAGFG SALLCPLLVY Sbjct 130 D-IAGAALPWLRIAILGTPAILISLAGNGWMRGVQDTVRPLRYVVAGFGLSALLCPLLVY 188 Query 183 GWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRT 242 GWLGLPR L GSAVANLVGQWLAALLF GALLAERVSLRPDR +L QL++ARDLIVRT Sbjct 189 GWLGLPRMELAGSAVANLVGQWLAALLFGGALLAERVSLRPDRHILREQLVLARDLIVRT 248 Query 243 LAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAG 302 +AFQ C++SAAAVAARFGAAALAAHQVVLQLWG ALVLDSLAIAAQSLVGAALGAGDA Sbjct 249 MAFQACFISAAAVAARFGAAALAAHQVVLQLWGFFALVLDSLAIAAQSLVGAALGAGDAA 308 Query 303 HAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAG 362 HAK VAWRVT FSLLAAG+LAAAL LG+ VLP LFTDD +VLAA+ VPWWF+V QLPFAG Sbjct 309 HAKWVAWRVTVFSLLAAGMLAAALALGAPVLPALFTDDAAVLAAVTVPWWFLVAQLPFAG 368 Query 363 IVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLI 422 IVFA+DGVLLGAGDAAFMRTATV SAL GFLPL WLSL YGWGLAGIWSGL TFIVLRLI Sbjct 369 IVFALDGVLLGAGDAAFMRTATVVSALAGFLPLTWLSLVYGWGLAGIWSGLATFIVLRLI 428 Query 423 FVGWRAYSGRWAVTGAA 439 FVGWRA SGRWA+TG A Sbjct 429 FVGWRAMSGRWALTGTA 445 >gi|118617685|ref|YP_906017.1| DNA-damage-inducible protein F DinF [Mycobacterium ulcerans Agy99] gi|118569795|gb|ABL04546.1| DNA-damage-inducible protein F DinF [Mycobacterium ulcerans Agy99] Length=445 Score = 567 bits (1461), Expect = 1e-159, Method: Compositional matrix adjust. Identities = 365/437 (84%), Positives = 390/437 (90%), Gaps = 6/437 (1%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AGGR+IA LALPALGVLAAEPLYLLFD AV+GRLGA++LAGLAIGSLVLGLVGSQATFLS Sbjct 10 AGGRKIAALALPALGVLAAEPLYLLFDTAVIGRLGALALAGLAIGSLVLGLVGSQATFLS 69 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA-----SG 122 YGTTAR+AR YGAG+RVAAV EGVQATWLA+ LG L ++VV+ A PLVS IA SG Sbjct 70 YGTTARSARHYGAGDRVAAVAEGVQATWLAVALGLLTILVVQIAAVPLVSVIAGARAGSG 129 Query 123 DGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVY 182 D I AALPWL IAILGTPAIL+SLAGNGW+RGVQDTVRPLRYVVAGFG SALLCPLLVY Sbjct 130 D-IAGAALPWLWIAILGTPAILISLAGNGWMRGVQDTVRPLRYVVAGFGLSALLCPLLVY 188 Query 183 GWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRT 242 GWLGLPR L GSAVANLVGQWLAALLF GALLAERVSLRPDR +L QL++ARDLIVRT Sbjct 189 GWLGLPRMELAGSAVANLVGQWLAALLFGGALLAERVSLRPDRHILREQLVLARDLIVRT 248 Query 243 LAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAG 302 +AFQ C++SAAAVAARFGAAALAAHQVVLQLWG ALVLDSLAIAAQSLVGAALGAGDA Sbjct 249 MAFQACFISAAAVAARFGAAALAAHQVVLQLWGFFALVLDSLAIAAQSLVGAALGAGDAA 308 Query 303 HAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAG 362 HAK VAWRVT FSLLAAG+LAAAL LG+ VLP LFTDD +VLAAI VPWWF+V QLPFAG Sbjct 309 HAKWVAWRVTVFSLLAAGMLAAALALGAPVLPALFTDDAAVLAAITVPWWFLVAQLPFAG 368 Query 363 IVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLI 422 +VFA+DGVLLGAGDAAFMRTATV SAL GFLPL WLSL YGWGLAGIWSGL TFIVLRLI Sbjct 369 VVFALDGVLLGAGDAAFMRTATVVSALAGFLPLTWLSLVYGWGLAGIWSGLATFIVLRLI 428 Query 423 FVGWRAYSGRWAVTGAA 439 FVGWRA SGRWA+TG A Sbjct 429 FVGWRAMSGRWALTGTA 445 >gi|118469333|ref|YP_886968.1| MATE efflux family protein [Mycobacterium smegmatis str. MC2 155] gi|118170620|gb|ABK71516.1| MATE efflux family protein [Mycobacterium smegmatis str. MC2 155] Length=455 Score = 562 bits (1448), Expect = 4e-158, Method: Compositional matrix adjust. Identities = 324/433 (75%), Positives = 368/433 (85%), Gaps = 0/433 (0%) Query 7 RAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFL 66 +A GR+IA+LA PALGVLAAEP+YLLFD+A+VGRLGA+SLAGLAIG LVLGLV SQ TFL Sbjct 23 QATGRRIAKLAFPALGVLAAEPIYLLFDLAIVGRLGAVSLAGLAIGGLVLGLVNSQGTFL 82 Query 67 SYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGIT 126 SYGTTAR+AR YGAG+R +AV EGVQATWLALGLG L++ VVEA A P++SA+A+G I Sbjct 83 SYGTTARSARFYGAGDRTSAVAEGVQATWLALGLGLLIIAVVEAVAVPMLSALAAGGEIA 142 Query 127 AAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLG 186 AALPWLR+AIL PAILVS+AGNGW+RGVQDTVRPLRYVV GF SA+LCPLLVYGWLG Sbjct 143 HAALPWLRVAILAAPAILVSMAGNGWMRGVQDTVRPLRYVVLGFAVSAVLCPLLVYGWLG 202 Query 187 LPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQ 246 PR L GSAVAN+VGQWLAA LF ALL E+V LR VL QL+M RDL++R+LAFQ Sbjct 203 FPRLELAGSAVANVVGQWLAAGLFMRALLVEKVPLRLRPDVLRVQLVMGRDLLLRSLAFQ 262 Query 247 VCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKA 306 C+VSA AVAARFGAAA+AAHQVVLQLW LALVLDSLAIAAQSLVGAALGAG HAK+ Sbjct 263 ACFVSAGAVAARFGAAAVAAHQVVLQLWSFLALVLDSLAIAAQSLVGAALGAGQLAHAKS 322 Query 307 VAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFA 366 VAWRVT FS LA +LA +G+SV P +FTDD SVLA IGVPWWF+V QLP AGIVFA Sbjct 323 VAWRVTLFSTLAGVVLAVVFAVGASVFPPVFTDDESVLATIGVPWWFLVAQLPVAGIVFA 382 Query 367 VDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGW 426 +DGVLLGAGDA FMR AT+ASA++GFLPL+WLSLA+GWGL GIWSGL TF+VLRL+FVGW Sbjct 383 LDGVLLGAGDAKFMRNATLASAMLGFLPLIWLSLAFGWGLFGIWSGLSTFMVLRLVFVGW 442 Query 427 RAYSGRWAVTGAA 439 RA+SGRW V G + Sbjct 443 RAFSGRWLVPGTS 455 >gi|120403308|ref|YP_953137.1| MATE efflux family protein [Mycobacterium vanbaalenii PYR-1] gi|119956126|gb|ABM13131.1| MATE efflux family protein [Mycobacterium vanbaalenii PYR-1] Length=442 Score = 554 bits (1427), Expect = 1e-155, Method: Compositional matrix adjust. Identities = 312/433 (73%), Positives = 357/433 (83%), Gaps = 3/433 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 A R+IA LA PALGVLAAEP+YLLFD+AV+GRLGA++LAGLAIG+L++G++ SQ TFLS Sbjct 8 ASSRRIAALAFPALGVLAAEPIYLLFDLAVIGRLGALNLAGLAIGALIMGVLSSQLTFLS 67 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG--- 124 YGTTARAAR YGAGNR AAV EGVQATWLALG+G +VV V+ TA PLVS +A G Sbjct 68 YGTTARAARFYGAGNRTAAVEEGVQATWLALGIGTTIVVAVQLTAVPLVSVLAGGADHGR 127 Query 125 ITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGW 184 I ALPW+RIA L PAIL++ AGNGW+RGVQDT+RPLRYV+ GF SA+LCPLLVYGW Sbjct 128 IAETALPWVRIASLAVPAILIAAAGNGWMRGVQDTMRPLRYVIFGFAVSAVLCPLLVYGW 187 Query 185 LGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLA 244 LG P GL GSAVAN+VGQ+LAA LF AL+ E+V LR VL AQ++M RDL++RT+A Sbjct 188 LGAPELGLPGSAVANVVGQYLAAALFCRALVVEKVPLRLRPPVLRAQVVMGRDLVLRTMA 247 Query 245 FQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHA 304 FQ C++SA AVAARFGAAA+AAHQVVLQLW LALVLDSLAIAAQSLVGAALGAG HA Sbjct 248 FQACFISAGAVAARFGAAAVAAHQVVLQLWNFLALVLDSLAIAAQSLVGAALGAGQLTHA 307 Query 305 KAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIV 364 KAVAWRVT FS +A +LA LGSSV P +FTDDRSVL IGVPWWF+V QLP AGIV Sbjct 308 KAVAWRVTIFSTVAGVVLATVFALGSSVFPAVFTDDRSVLDQIGVPWWFLVAQLPVAGIV 367 Query 365 FAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFV 424 FA+DGVLLGAGDA FMR AT+ SALVGFLPL+WLSLA+GWGL GIW+GL F+VLRL+FV Sbjct 368 FAIDGVLLGAGDATFMRNATLISALVGFLPLIWLSLAFGWGLLGIWAGLSAFMVLRLVFV 427 Query 425 GWRAYSGRWAVTG 437 GWRA SGRW V G Sbjct 428 GWRALSGRWLVPG 440 >gi|229490921|ref|ZP_04384756.1| mate efflux family protein [Rhodococcus erythropolis SK121] gi|229322311|gb|EEN88097.1| mate efflux family protein [Rhodococcus erythropolis SK121] Length=467 Score = 509 bits (1312), Expect = 3e-142, Method: Compositional matrix adjust. Identities = 281/430 (66%), Positives = 338/430 (79%), Gaps = 0/430 (0%) Query 10 GRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYG 69 GR+I LA PALGVLAAEPLYLLFDIAVVGRLGA+ LAGLA+G L+L LV +Q TFLSYG Sbjct 20 GRRIFSLAFPALGVLAAEPLYLLFDIAVVGRLGALPLAGLAVGGLILSLVSTQLTFLSYG 79 Query 70 TTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAA 129 TTARAAR +GAG AV EGVQATWLA +G +VV+V+ A PL SA+A I AAA Sbjct 80 TTARAARLHGAGRERDAVGEGVQATWLAAAIGLALVVIVQVIAGPLTSAVAGTPDIAAAA 139 Query 130 LPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 WLRIA+LG P ILV+LAGNGW+RGVQ+TVRPLR+VV G G SA+LCP+LV+G LG PR Sbjct 140 ESWLRIAVLGVPLILVALAGNGWMRGVQNTVRPLRFVVVGLGISAVLCPILVHGLLGAPR 199 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQVCY 249 L GSAVANLVGQ ++ +LFA AL E VS RP A++ AQ++M RDLI+R+LAFQ C+ Sbjct 200 LELEGSAVANLVGQSVSGVLFAWALFREPVSARPHFAIMRAQMLMGRDLILRSLAFQACF 259 Query 250 VSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAW 309 VSAAAVA+RFGAA + AHQVVLQLW L++L+LDSLAIAAQ+L+GAALG G A AK + W Sbjct 260 VSAAAVASRFGAAVVGAHQVVLQLWNLVSLLLDSLAIAAQTLIGAALGGGFAAAAKKMTW 319 Query 310 RVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDG 369 R+TA+S + A +LA G SV+PGLFT D VL + + WWF V +P AGIVFA+DG Sbjct 320 RITAWSTVFAVVLAIFFAAGHSVIPGLFTSDAEVLGQMSIAWWFFVAIMPVAGIVFALDG 379 Query 370 VLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAY 429 VLLGAGD F+R AT+ A++GFLP +WLSLAY WGLAGIW+GL F+VLR++ V WRA+ Sbjct 380 VLLGAGDVVFLRNATMLCAVLGFLPAIWLSLAYDWGLAGIWAGLTVFVVLRMVAVSWRAF 439 Query 430 SGRWAVTGAA 439 SG+WAVTG A Sbjct 440 SGKWAVTGPA 449 >gi|226306123|ref|YP_002766083.1| hypothetical protein RER_26360 [Rhodococcus erythropolis PR4] gi|226185240|dbj|BAH33344.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=467 Score = 508 bits (1307), Expect = 9e-142, Method: Compositional matrix adjust. Identities = 280/430 (66%), Positives = 338/430 (79%), Gaps = 0/430 (0%) Query 10 GRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYG 69 GR+I LA PALGVLAAEPLYLLFDIAVVGRLGA+ LAGLA+G L+L LV +Q TFLSYG Sbjct 20 GRRIFSLAFPALGVLAAEPLYLLFDIAVVGRLGALPLAGLAVGGLILSLVSTQLTFLSYG 79 Query 70 TTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAA 129 TTARAAR +GAG AV EGVQATWLA +G +VV+V+ A PL SA+A I AAA Sbjct 80 TTARAARLHGAGRERDAVGEGVQATWLAAAIGLALVVIVQVIAGPLTSAVAGTPDIAAAA 139 Query 130 LPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 WLRIA+LG P ILV+LAGNGW+RGVQ+TVRPLR+V+ G G SA+LCP+LV+G LG PR Sbjct 140 ESWLRIAVLGVPLILVALAGNGWMRGVQNTVRPLRFVLVGLGISAVLCPILVHGLLGAPR 199 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQVCY 249 L GSAVANLVGQ ++ +LFA AL E VS RP A++ AQ++M RDLI+R+LAFQ C+ Sbjct 200 MELEGSAVANLVGQSVSGVLFAWALFREPVSARPHLAIMRAQMLMGRDLILRSLAFQACF 259 Query 250 VSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAW 309 VSAAAVA+RFGAA + AHQVVLQLW L++L+LDSLAIAAQ+L+GAALG G A AK + W Sbjct 260 VSAAAVASRFGAAVVGAHQVVLQLWNLVSLLLDSLAIAAQTLIGAALGGGFAAAAKRMTW 319 Query 310 RVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDG 369 R+TA+S + A +LA G SV+PGLFT D VL + + WWF V +P AGIVFA+DG Sbjct 320 RITAWSTVFAVVLAIFFAAGHSVIPGLFTSDAEVLGQMSIAWWFFVAIMPVAGIVFALDG 379 Query 370 VLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAY 429 VLLGAGD F+R AT+ A++GFLP +WLSLAY WGLAGIW+GL F+VLR++ V WRA+ Sbjct 380 VLLGAGDVVFLRNATMLCAVLGFLPAIWLSLAYDWGLAGIWAGLTVFVVLRMVAVSWRAF 439 Query 430 SGRWAVTGAA 439 SG+WAVTG A Sbjct 440 SGKWAVTGPA 449 >gi|169630210|ref|YP_001703859.1| DNA-damage-inducible protein F [Mycobacterium abscessus ATCC 19977] gi|169242177|emb|CAM63205.1| Possible DNA-damage-inducible protein F [Mycobacterium abscessus] Length=444 Score = 496 bits (1277), Expect = 3e-138, Method: Compositional matrix adjust. Identities = 307/427 (72%), Positives = 352/427 (83%), Gaps = 0/427 (0%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R+I LALPALGVLAAEPLYLLFDIA+VGRLGA+ LAGLA+G LVL LVG+Q TFLSYGT Sbjct 15 RRIISLALPALGVLAAEPLYLLFDIAMVGRLGAVPLAGLAVGGLVLSLVGTQLTFLSYGT 74 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TARAARR+G+G+R AV EGVQATWLAL +GA+VV+VV A A P+V AIA+ + A L Sbjct 75 TARAARRFGSGDRPGAVHEGVQATWLALLIGAVVVLVVHAVAGPVVRAIAAAPDVAAQGL 134 Query 131 PWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRW 190 WLRIAI PAILVSLAGNGW+RGVQ+TVRPLRYV+AGF SA+LCP+L+YG G+PR Sbjct 135 GWLRIAIFAAPAILVSLAGNGWMRGVQNTVRPLRYVIAGFAVSAVLCPVLIYGLAGVPRM 194 Query 191 GLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQVCYV 250 GL GSAVANLVGQWLAA+LF AL AE LR DRAVL AQL++ARDL+VR+LAFQ C++ Sbjct 195 GLAGSAVANLVGQWLAAILFLRALHAEHAPLRTDRAVLRAQLVLARDLLVRSLAFQACFI 254 Query 251 SAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWR 310 SAAAVAARFGAAALAAHQVVLQ+W LALVLDSLAIAAQ+LVGAALGAG AK+VAWR Sbjct 255 SAAAVAARFGAAALAAHQVVLQMWSFLALVLDSLAIAAQTLVGAALGAGRVPEAKSVAWR 314 Query 311 VTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDGV 370 V+ FSL A +LA L LG+ VLP LFT D +VL + VPWWF+V QLP +G+VFA+DGV Sbjct 315 VSIFSLGFAVLLAGILALGAPVLPRLFTSDAAVLHEMRVPWWFLVCQLPISGLVFALDGV 374 Query 371 LLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAYS 430 LLGA DA FMR AT+ SAL GFLP VWL+L +GWGLAGIW GL F+VLRL+ VGWRA S Sbjct 375 LLGAADARFMRNATMISALCGFLPSVWLALVFGWGLAGIWCGLTLFLVLRLVLVGWRALS 434 Query 431 GRWAVTG 437 G WAV G Sbjct 435 GGWAVPG 441 >gi|333991200|ref|YP_004523814.1| DNA-damage-inducible protein F DinF [Mycobacterium sp. JDM601] gi|333487168|gb|AEF36560.1| DNA-damage-inducible protein F DinF [Mycobacterium sp. JDM601] Length=439 Score = 489 bits (1260), Expect = 3e-136, Method: Compositional matrix adjust. Identities = 342/437 (79%), Positives = 370/437 (85%), Gaps = 0/437 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +S+ G AG RQIA LALPAL VLAAEPLYLLFD AVVGRLGA+ LAGLAIG L+LGLV Sbjct 1 MSEAGAPAGARQIAALALPALVVLAAEPLYLLFDTAVVGRLGALGLAGLAIGGLILGLVA 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQATFLSYGTTAR+AR YGAG+R AAV EGVQATWLALGLGAL+VVVV+A A PLVSAIA Sbjct 61 SQATFLSYGTTARSARHYGAGDRAAAVAEGVQATWLALGLGALIVVVVQAAAVPLVSAIA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 D I AAA WLRIAILG PAILVSLAGNGWLRGVQDTVRP RYVVAGF SALLCPLL Sbjct 121 GRDDIAAAACGWLRIAILGAPAILVSLAGNGWLRGVQDTVRPPRYVVAGFALSALLCPLL 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VYG LG+PRWGL GSAVAN GQWLAALLF AL +ER+ LR D VL AQ+ M RDLIV Sbjct 181 VYGGLGMPRWGLPGSAVANCAGQWLAALLFLRALRSERIPLRIDGPVLRAQVSMGRDLIV 240 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 R+LAFQ C+VSAAAVAARFGAAALAAHQ+VLQLW LALVLDSLAIAAQ+LVGAALGAG Sbjct 241 RSLAFQACFVSAAAVAARFGAAALAAHQIVLQLWTFLALVLDSLAIAAQALVGAALGAGA 300 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 AG A+ VA RVT FS +AA +LAA L GS+VLPG+FTDD +VLA++ VPWWF+V QLP Sbjct 301 AGRARTVAARVTVFSAVAAAVLAALLAAGSTVLPGVFTDDAAVLASVAVPWWFLVAQLPI 360 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AG+VFA+DGVLLGAGDAAFMRTATV SAL GFLPL WLSL WGLAGIWSGL TFIVLR Sbjct 361 AGVVFALDGVLLGAGDAAFMRTATVISALAGFLPLTWLSLILDWGLAGIWSGLTTFIVLR 420 Query 421 LIFVGWRAYSGRWAVTG 437 L+FVGWRA SGRW G Sbjct 421 LVFVGWRALSGRWTRAG 437 >gi|111023607|ref|YP_706579.1| DNA-damage-inducible protein F ( multi anti extrusion protein MatE) [Rhodococcus jostii RHA1] gi|110823137|gb|ABG98421.1| probable DNA-damage-inducible protein F (probable multi antimicrobial extrusion protein MatE) [Rhodococcus jostii RHA1] Length=462 Score = 471 bits (1212), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 279/438 (64%), Positives = 345/438 (79%), Gaps = 0/438 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +S+V A R + LALPALGVLAAEP+YLLFDIAVVGRLGA++LAGLA+G L+L V Sbjct 4 VSEVTGDATARTVFGLALPALGVLAAEPIYLLFDIAVVGRLGALALAGLAVGGLILAQVS 63 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 +Q TFLSYGTTARA+R +GAG+ AV EGVQATWLALG+GALV+ +V A P+ SAIA Sbjct 64 TQLTFLSYGTTARASRMHGAGDERGAVREGVQATWLALGIGALVIALVHLFARPVTSAIA 123 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 G I AAA WLRIA+ G P ILV++AGNGW+RGVQ+TVRPLR+V+AG SA+ CP+L Sbjct 124 GGSDIAAAAESWLRIAVFGAPLILVAMAGNGWMRGVQNTVRPLRFVIAGLVVSAVACPVL 183 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 V+G G PR L GSAVAN++GQ L+A LF GAL+ ERV LRP +V+ AQ+++ RDLI+ Sbjct 184 VHGLWGAPRLELEGSAVANVIGQALSASLFVGALVVERVPLRPRWSVMRAQMVLGRDLIL 243 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 R+LAFQ C++SAAAVA+RFGAAA+AAHQVVLQLW L+AL LDSLAIAAQ+LVGAALGAG Sbjct 244 RSLAFQACFLSAAAVASRFGAAAVAAHQVVLQLWNLVALTLDSLAIAAQALVGAALGAGH 303 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 A A ++WR+T +S + A LA LG V+P LFT D++VL + V WWF V +P Sbjct 304 AKGATRLSWRITRWSTVFATGLALIFALGHGVIPELFTSDQAVLDEMAVAWWFFVAIMPV 363 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AG+VFA+DGVLLGAGD AF+R AT++ ALVGFLPL+WLS+ + WGLAGIW+GL FI+LR Sbjct 364 AGVVFALDGVLLGAGDVAFLRNATLSCALVGFLPLIWLSMLHDWGLAGIWTGLTVFIILR 423 Query 421 LIFVGWRAYSGRWAVTGA 438 ++ V WR +GRWAV GA Sbjct 424 MLAVVWRVGTGRWAVVGA 441 >gi|312139333|ref|YP_004006669.1| multi antimicrobial extrusion family protein mate [Rhodococcus equi 103S] gi|311888672|emb|CBH47984.1| putative multi antimicrobial extrusion family protein MatE [Rhodococcus equi 103S] Length=456 Score = 454 bits (1168), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 273/431 (64%), Positives = 332/431 (78%), Gaps = 0/431 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AG R+I LA+PALGVLAAEPLYLL DIA+VGRLGA++LAGLA+G LVL V +Q TFLS Sbjct 17 AGPRRILGLAVPALGVLAAEPLYLLLDIAIVGRLGALALAGLAVGGLVLAQVSTQLTFLS 76 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITA 127 YGTTARA+R +GAG AV EGVQATWLALG+GA++VV V+ A P+ S IA I A Sbjct 77 YGTTARASRLHGAGRERDAVREGVQATWLALGIGAVLVVAVQVLAGPVTSLIAGDGEIAA 136 Query 128 AALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGL 187 AA WLRIA+ G P ILV++AGNGW+RGVQ+T+RPL +V+ G SA+LC LLV+G G Sbjct 137 AAERWLRIAVFGAPLILVAMAGNGWMRGVQNTMRPLGFVLVGQAVSAVLCVLLVHGVAGA 196 Query 188 PRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQV 247 PRW L GSAVAN+ GQ +A LF ALL RV LRP V+ AQ+++ RDLI+R+LAFQ Sbjct 197 PRWELEGSAVANVAGQATSAALFGVALLRARVPLRPSWTVMRAQMVLGRDLILRSLAFQA 256 Query 248 CYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAV 307 C++SAAAVA+RFGAA++AAHQVVLQLW +AL LDSLAIAAQ+LVGAALG D A + Sbjct 257 CFLSAAAVASRFGAASVAAHQVVLQLWNFVALTLDSLAIAAQTLVGAALGRSDVRGANRL 316 Query 308 AWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 AWRVT +S + A +LA G++++P FTDD +VL V WWF V +P AGIVFA+ Sbjct 317 AWRVTRWSAVFATVLALVFAAGATLIPTFFTDDPAVLDQTSVAWWFFVGIMPVAGIVFAL 376 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DGVLLGAGDAAF+RTAT+A AL+GFLPL+W SLA+ WGLAGIW GL F+VLR++ V WR Sbjct 377 DGVLLGAGDAAFLRTATLACALIGFLPLIWSSLAWEWGLAGIWLGLTVFMVLRMLTVLWR 436 Query 428 AYSGRWAVTGA 438 SGRWAV G+ Sbjct 437 TASGRWAVGGS 447 >gi|325672788|ref|ZP_08152484.1| MATE efflux family protein [Rhodococcus equi ATCC 33707] gi|325556665|gb|EGD26331.1| MATE efflux family protein [Rhodococcus equi ATCC 33707] Length=462 Score = 454 bits (1168), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 273/431 (64%), Positives = 332/431 (78%), Gaps = 0/431 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AG R+I LA+PALGVLAAEPLYLL DIA+VGRLGA++LAGLA+G LVL V +Q TFLS Sbjct 23 AGPRRILGLAVPALGVLAAEPLYLLLDIAIVGRLGALALAGLAVGGLVLAQVSTQLTFLS 82 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITA 127 YGTTARA+R +GAG AV EGVQATWLALG+GA++VV V+ A P+ S IA I A Sbjct 83 YGTTARASRLHGAGRERDAVREGVQATWLALGIGAVLVVAVQVLAGPVTSLIAGDGEIAA 142 Query 128 AALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGL 187 AA WLRIA+ G P ILV++AGNGW+RGVQ+T+RPL +V+ G SA+LC LLV+G G Sbjct 143 AAERWLRIAVFGAPLILVAMAGNGWMRGVQNTMRPLGFVLVGQAVSAVLCVLLVHGVAGA 202 Query 188 PRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQV 247 PRW L GSAVAN+ GQ +A LF ALL RV LRP V+ AQ+++ RDLI+R+LAFQ Sbjct 203 PRWELEGSAVANVAGQATSAALFGVALLRARVPLRPSWTVMRAQMVLGRDLILRSLAFQA 262 Query 248 CYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAV 307 C++SAAAVA+RFGAA++AAHQVVLQLW +AL LDSLAIAAQ+LVGAALG D A + Sbjct 263 CFLSAAAVASRFGAASVAAHQVVLQLWNFVALTLDSLAIAAQTLVGAALGRSDVRGANRL 322 Query 308 AWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 AWRVT +S + A +LA G++++P FTDD +VL V WWF V +P AGIVFA+ Sbjct 323 AWRVTRWSAVFATVLALVFAAGATLIPTFFTDDPAVLDQTSVAWWFFVGIMPVAGIVFAL 382 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DGVLLGAGDAAF+RTAT+A AL+GFLPL+W SLA+ WGLAGIW GL F+VLR++ V WR Sbjct 383 DGVLLGAGDAAFLRTATLACALIGFLPLIWSSLAWEWGLAGIWLGLTVFMVLRMLTVLWR 442 Query 428 AYSGRWAVTGA 438 SGRWAV G+ Sbjct 443 TASGRWAVGGS 453 >gi|54026033|ref|YP_120275.1| putative DNA-damage-inducible protein F [Nocardia farcinica IFM 10152] gi|54017541|dbj|BAD58911.1| putative DNA-damage-inducible protein F [Nocardia farcinica IFM 10152] Length=449 Score = 451 bits (1160), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 275/431 (64%), Positives = 339/431 (79%), Gaps = 0/431 (0%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AG R+I LALP LGVL AEPLYLLFD+AVVGRLGA++LAGLA+G L+L V +Q TFLS Sbjct 8 AGPRRILGLALPTLGVLVAEPLYLLFDLAVVGRLGALALAGLAVGGLILAQVSTQLTFLS 67 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITA 127 YGTTAR+ARR+GAG+R AV EGVQATWLA+ +G L++VV++A A P+ +AI+ G I A Sbjct 68 YGTTARSARRHGAGDRPGAVAEGVQATWLAVAVGGLILVVMQAAAGPVTAAISGGGDIAA 127 Query 128 AALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGL 187 ALPWLRIA+ G P IL+++AGNGWLRGVQDT RPL +VV G G SA+LCP+LV+G LG Sbjct 128 EALPWLRIALFGVPLILIAMAGNGWLRGVQDTRRPLVFVVCGLGLSAVLCPVLVHGLLGA 187 Query 188 PRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQV 247 PR L GSAVAN+ GQ + A LF A++ ERV L P +V+ AQL++ RDLI+R+L+FQ Sbjct 188 PRLELAGSAVANVAGQTVTAALFVTAVVRERVPLTPHWSVMRAQLVLGRDLILRSLSFQA 247 Query 248 CYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAV 307 C+VSAAAVAARFGAA++AAHQ+VLQLW LAL LD+LAIAAQ+LVGAALG GDA A+ + Sbjct 248 CFVSAAAVAARFGAASVAAHQLVLQLWSFLALTLDALAIAAQTLVGAALGGGDATGARRL 307 Query 308 AWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 A R+T +S L A LAA G +V+P LFT D +VL V WWF V +P AG+VFA+ Sbjct 308 AGRITRWSELFALALAAVFAAGYTVIPALFTTDAAVLERTQVAWWFFVALIPVAGVVFAL 367 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DGVLLGAGDAAF+RTAT+A+AL+GFLP +WLSLA+ WG+AGIWSGL F+VLRL V R Sbjct 368 DGVLLGAGDAAFLRTATLAAALLGFLPAIWLSLAFDWGIAGIWSGLAAFMVLRLAAVSRR 427 Query 428 AYSGRWAVTGA 438 SG+WA G+ Sbjct 428 TMSGKWATVGS 438 >gi|300788172|ref|YP_003768463.1| DNA-damage-inducible protein F [Amycolatopsis mediterranei U32] gi|299797686|gb|ADJ48061.1| DNA-damage-inducible protein F [Amycolatopsis mediterranei U32] Length=439 Score = 450 bits (1158), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 258/433 (60%), Positives = 314/433 (73%), Gaps = 4/433 (0%) Query 6 HRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATF 65 R +++ LA+PALGVLAAEPLY+L D AVVG L A+SLAGLA+G +VL V SQ TF Sbjct 7 ERVPAKRVLGLAVPALGVLAAEPLYVLVDTAVVGHLDALSLAGLALGGVVLAQVSSQLTF 66 Query 66 LSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGI 125 LSYGTT+R AR +GAG R AV EGVQATWLA+ +G +V+ + A P+ ++ D I Sbjct 67 LSYGTTSRTARLHGAGRRTEAVREGVQATWLAVFVGLVVLAAGQLLAWPIARVLSGSDQI 126 Query 126 TAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWL 185 +AA+ WLRIA+ G P IL+++AGNGW+RGVQD RPLRYV+AG G SA+LCP+LVY W Sbjct 127 ASAAVSWLRIALFGAPLILITMAGNGWMRGVQDAARPLRYVLAGNGISAVLCPVLVY-WA 185 Query 186 GLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAF 245 GL GL GSA+AN+V Q ++A LF AL E+V LRPD V+ AQL + RDL++R+LAF Sbjct 186 GL---GLEGSAIANVVAQVISASLFFLALAREKVGLRPDVKVMRAQLGLGRDLVLRSLAF 242 Query 246 QVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAK 305 Q C+VSAAAVAAR A+ AHQVVLQLW LALVLDS+AIAAQSLVGAALGA A A+ Sbjct 243 QACFVSAAAVAARTSTEAVGAHQVVLQLWTFLALVLDSVAIAAQSLVGAALGANSARQAR 302 Query 306 AVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVF 365 VA ++T + LL L S VLP FT D VLA I WWF V P AG+VF Sbjct 303 GVASQITGYGLLLGCFLCVLFAALSWVLPHAFTSDPGVLAEIPHAWWFFVALQPIAGVVF 362 Query 366 AVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVG 425 A+DGVLLGAGDAAF+R AT+ SA +GFLPL+W SLA+GWGL GIW+GL F++LRL V Sbjct 363 ALDGVLLGAGDAAFLRNATLGSAALGFLPLIWASLAFGWGLTGIWTGLSCFMLLRLAAVL 422 Query 426 WRAYSGRWAVTGA 438 R SG WA+TGA Sbjct 423 ARWRSGNWALTGA 435 >gi|340529757|gb|AEK44962.1| DNA-damage-inducible protein F [Amycolatopsis mediterranei S699] Length=440 Score = 450 bits (1157), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 258/433 (60%), Positives = 314/433 (73%), Gaps = 4/433 (0%) Query 6 HRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATF 65 R +++ LA+PALGVLAAEPLY+L D AVVG L A+SLAGLA+G +VL V SQ TF Sbjct 8 ERVPAKRVLGLAVPALGVLAAEPLYVLVDTAVVGHLDALSLAGLALGGVVLAQVSSQLTF 67 Query 66 LSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGI 125 LSYGTT+R AR +GAG R AV EGVQATWLA+ +G +V+ + A P+ ++ D I Sbjct 68 LSYGTTSRTARLHGAGRRTEAVREGVQATWLAVFVGLVVLAAGQLLAWPIARVLSGSDQI 127 Query 126 TAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWL 185 +AA+ WLRIA+ G P IL+++AGNGW+RGVQD RPLRYV+AG G SA+LCP+LVY W Sbjct 128 ASAAVSWLRIALFGAPLILITMAGNGWMRGVQDAARPLRYVLAGNGISAVLCPVLVY-WA 186 Query 186 GLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAF 245 GL GL GSA+AN+V Q ++A LF AL E+V LRPD V+ AQL + RDL++R+LAF Sbjct 187 GL---GLEGSAIANVVAQVISASLFFLALAREKVGLRPDVKVMRAQLGLGRDLVLRSLAF 243 Query 246 QVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAK 305 Q C+VSAAAVAAR A+ AHQVVLQLW LALVLDS+AIAAQSLVGAALGA A A+ Sbjct 244 QACFVSAAAVAARTSTEAVGAHQVVLQLWTFLALVLDSVAIAAQSLVGAALGANSARQAR 303 Query 306 AVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVF 365 VA ++T + LL L S VLP FT D VLA I WWF V P AG+VF Sbjct 304 GVASQITGYGLLLGCFLCVLFAALSWVLPHAFTSDPGVLAEIPHAWWFFVALQPIAGVVF 363 Query 366 AVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVG 425 A+DGVLLGAGDAAF+R AT+ SA +GFLPL+W SLA+GWGL GIW+GL F++LRL V Sbjct 364 ALDGVLLGAGDAAFLRNATLGSAALGFLPLIWASLAFGWGLTGIWTGLSCFMLLRLAAVL 423 Query 426 WRAYSGRWAVTGA 438 R SG WA+TGA Sbjct 424 ARWRSGNWALTGA 436 >gi|257055497|ref|YP_003133329.1| putative efflux protein, MATE family [Saccharomonospora viridis DSM 43017] gi|256585369|gb|ACU96502.1| putative efflux protein, MATE family [Saccharomonospora viridis DSM 43017] Length=438 Score = 448 bits (1153), Expect = 7e-124, Method: Compositional matrix adjust. Identities = 252/433 (59%), Positives = 315/433 (73%), Gaps = 4/433 (0%) Query 6 HRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATF 65 R R++ +LA+PALGVLAAEPLY+L D AVVG LGA+ LAGLA+G +L LV +Q TF Sbjct 7 QRVPAREVWRLAVPALGVLAAEPLYVLVDTAVVGHLGALPLAGLALGGTLLSLVSTQLTF 66 Query 66 LSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGI 125 LSYGTTAR AR +GAG R AV EGVQATWLAL +G V+VV + A P+ ++ + Sbjct 67 LSYGTTARTARLHGAGRRADAVGEGVQATWLALAVGLAVLVVGQLVAEPVARLMSGDPAV 126 Query 126 TAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWL 185 + WLRIA+ GTP ILV++AGNGW+RGVQD RPLRYV+AG SA LCP+LVY + Sbjct 127 AEQTVSWLRIALCGTPMILVTMAGNGWMRGVQDAARPLRYVLAGNALSAALCPVLVYP-V 185 Query 186 GLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAF 245 G WGL GSAVAN+V Q ++A LF AL+ E V RP +V+ AQL + RDL++R+LAF Sbjct 186 G---WGLEGSAVANVVAQTVSASLFIRALIREGVFRRPQPSVMWAQLRLGRDLVLRSLAF 242 Query 246 QVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAK 305 Q C++SA VAAR A+ AHQVV QLW LALVLDS+AIAAQSL+GAALGA D+ A+ Sbjct 243 QACFLSATTVAARTSTEAVGAHQVVWQLWTFLALVLDSVAIAAQSLIGAALGAHDSRRAR 302 Query 306 AVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVF 365 +A ++ ++ L+ +LA S VLPGLFT D VLAAI WWF V P AG+VF Sbjct 303 GIASQIVSYGLVFGCVLAVVFAAASPVLPGLFTTDAGVLAAIPYAWWFFVALQPVAGVVF 362 Query 366 AVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVG 425 A+DGVLLGAGDA F+R AT+ SA++G+LPL+W+SLA+GWGLAGIW+GL F++LR+ FV Sbjct 363 ALDGVLLGAGDATFLRNATLGSAVLGYLPLIWMSLAFGWGLAGIWTGLSLFMLLRMGFVV 422 Query 426 WRAYSGRWAVTGA 438 R SG WAV GA Sbjct 423 ARWRSGGWAVVGA 435 >gi|134102368|ref|YP_001108029.1| DNA-damage-inducible protein F [Saccharopolyspora erythraea NRRL 2338] gi|133914991|emb|CAM05104.1| DNA-damage-inducible protein F [Saccharopolyspora erythraea NRRL 2338] Length=441 Score = 448 bits (1153), Expect = 7e-124, Method: Compositional matrix adjust. Identities = 261/439 (60%), Positives = 323/439 (74%), Gaps = 4/439 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +S G R R++ LA+PALGVLAAEPLY+L D AV+G LGA+ LAGLA+G + LV Sbjct 1 MSDRGERVPLRRLLALAVPALGVLAAEPLYVLVDTAVIGHLGAVPLAGLALGGTLFTLVS 60 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 SQ TFLSYGTTAR AR +GAG R AVTEGVQATWLA+G+G ++++ + A P+ +A Sbjct 61 SQLTFLSYGTTARTARLHGAGRRQDAVTEGVQATWLAVGIGVALLLLAQLFAVPVAELLA 120 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 I AA WLRIA+LG P +L+++AGNGW+RGVQDT RPLR V+ G G SA+LCPL+ Sbjct 121 GPGEIADAAARWLRIALLGAPMVLITMAGNGWMRGVQDTARPLRIVLVGNGISAVLCPLM 180 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 VY LG WGL GSAVANLVGQ +AA LF AL+ ERV LRP + AQL M RDL++ Sbjct 181 VYP-LG---WGLEGSAVANLVGQSVAAALFVRALVVERVELRPHLPTMRAQLGMGRDLVL 236 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 RT AFQVC++SA +VAAR GA + AAHQVV QLW L+LVLDSLAIAAQSLVGAALGAG Sbjct 237 RTAAFQVCFLSATSVAARTGAESAAAHQVVWQLWMFLSLVLDSLAIAAQSLVGAALGAGS 296 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 A+ +A +V+ + L +L S +LP LFT D +VLA +G WWF V P Sbjct 297 KARAEGIARQVSWYGLGFGVVLGVVFAALSGILPALFTSDEAVLATVGHAWWFFVALQPV 356 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AG+VFA+DGV LGAGDAA++RTAT+ SA VG+LP++WL+LA+ WGLAGIW+GL F++LR Sbjct 357 AGVVFALDGVFLGAGDAAYLRTATMLSAAVGYLPMIWLALAFDWGLAGIWTGLSLFMLLR 416 Query 421 LIFVGWRAYSGRWAVTGAA 439 L+ + RA SGRWAVTG A Sbjct 417 LVTLLLRARSGRWAVTGTA 435 >gi|226366096|ref|YP_002783879.1| MatE family protein [Rhodococcus opacus B4] gi|226244586|dbj|BAH54934.1| MatE family protein [Rhodococcus opacus B4] Length=462 Score = 448 bits (1152), Expect = 9e-124, Method: Compositional matrix adjust. Identities = 278/438 (64%), Positives = 341/438 (78%), Gaps = 0/438 (0%) Query 1 LSQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVG 60 +S+V A R + LALPALGVLAAEP+YLLFDIAVVGRLGA++LAGLA+G L+L V Sbjct 4 VSEVTGDATARTVFGLALPALGVLAAEPIYLLFDIAVVGRLGALALAGLAVGGLILAQVS 63 Query 61 SQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIA 120 +Q TFLSYGTTARA+R +GAG+ AV EGVQATWLALG+GALV+ +V P+ SAIA Sbjct 64 TQLTFLSYGTTARASRMHGAGDERGAVREGVQATWLALGIGALVIALVHLFGRPVTSAIA 123 Query 121 SGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLL 180 G I AAA WLRIA+ G P ILV++AGNGW+RGVQ+TVRPLR+V+AG SA+ CP+L Sbjct 124 GGSDIAAAAGSWLRIAVFGAPLILVAMAGNGWMRGVQNTVRPLRFVIAGLVVSAVACPVL 183 Query 181 VYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIV 240 V+G G PR L GSAVAN++GQ ++A LF GAL+ ERV LRP V+ AQ+++ RDLI+ Sbjct 184 VHGLWGAPRLELEGSAVANVIGQAVSASLFVGALVVERVPLRPRWHVMRAQMVLGRDLIL 243 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 R+LAFQ C++SAAAVA+RFGAAA+AAHQVVLQLW L+AL LDSLAIAAQ+LVGAALGAG Sbjct 244 RSLAFQACFLSAAAVASRFGAAAVAAHQVVLQLWNLVALTLDSLAIAAQALVGAALGAGH 303 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 A A ++WR+T +S + A LA LG V+P LFT DR+VL + V WWF V +P Sbjct 304 AAGATRLSWRITRWSTIFATGLALIFALGHGVIPELFTSDRAVLDEMAVAWWFFVAIMPV 363 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 AG+VFA+DGVLLGAGD AF+R AT+A AL GFLPL+WLS+ WGLAGIW+GL F++LR Sbjct 364 AGVVFALDGVLLGAGDVAFLRNATLACALAGFLPLIWLSMLNDWGLAGIWTGLTVFLILR 423 Query 421 LIFVGWRAYSGRWAVTGA 438 ++ V WR SGRWAV GA Sbjct 424 MLAVVWRVGSGRWAVVGA 441 >gi|291009318|ref|ZP_06567291.1| DNA-damage-inducible protein F [Saccharopolyspora erythraea NRRL 2338] Length=432 Score = 444 bits (1143), Expect = 1e-122, Method: Compositional matrix adjust. Identities = 261/432 (61%), Positives = 324/432 (75%), Gaps = 10/432 (2%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R++ LA+PALGVLAAEPLY+L D AV+G LGA+ LAGLA+G + LV SQ TFLSYGT Sbjct 2 RRLLALAVPALGVLAAEPLYVLVDTAVIGHLGAVPLAGLALGGTLFTLVSSQLTFLSYGT 61 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TAR AR +GAG R AVTEGVQATWLA+G+G ++++ + A P+ +A I AA Sbjct 62 TARTARLHGAGRRQDAVTEGVQATWLAVGIGVALLLLAQLFAVPVAELLAGPGEIADAAA 121 Query 131 PWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRW 190 WLRIA+LG P +L+++AGNGW+RGVQDT RPLR V+ G G SA+LCPL+VY LG W Sbjct 122 RWLRIALLGAPMVLITMAGNGWMRGVQDTARPLRIVLVGNGISAVLCPLMVYP-LG---W 177 Query 191 GLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQVCYV 250 GL GSAVANLVGQ +AA LF AL+ ERV LRP + AQL M RDL++RT AFQVC++ Sbjct 178 GLEGSAVANLVGQSVAAALFVRALVVERVELRPHLPTMRAQLGMGRDLVLRTAAFQVCFL 237 Query 251 SAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWR 310 SA +VAAR GA + AAHQVV QLW L+LVLDSLAIAAQSLVGAALGAG A+ +A + Sbjct 238 SATSVAARTGAESAAAHQVVWQLWMFLSLVLDSLAIAAQSLVGAALGAGSKARAEGIARQ 297 Query 311 VTAFSL---LAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 V+ + L + G++ AAL S +LP LFT D +VLA +G WWF V P AG+VFA+ Sbjct 298 VSWYGLGFGVVLGVVFAAL---SGILPALFTSDEAVLATVGHAWWFFVALQPVAGVVFAL 354 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DGV LGAGDAA++RTAT+ SA VG+LP++WL+LA+ WGLAGIW+GL F++LRL+ + R Sbjct 355 DGVFLGAGDAAYLRTATMLSAAVGYLPMIWLALAFDWGLAGIWTGLSLFMLLRLVTLLLR 414 Query 428 AYSGRWAVTGAA 439 A SGRWAVTG A Sbjct 415 ARSGRWAVTGTA 426 >gi|296139433|ref|YP_003646676.1| MATE efflux family protein [Tsukamurella paurometabola DSM 20162] gi|296027567|gb|ADG78337.1| MATE efflux family protein [Tsukamurella paurometabola DSM 20162] Length=441 Score = 442 bits (1136), Expect = 6e-122, Method: Compositional matrix adjust. Identities = 258/435 (60%), Positives = 322/435 (75%), Gaps = 0/435 (0%) Query 4 VGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQA 63 V R GR+I ALPALGVLAAEPLYLL+D A++GRLGA+ LAGLA+G L+L V +Q Sbjct 5 VSGRRLGRRILGQALPALGVLAAEPLYLLWDTAIIGRLGALPLAGLAVGGLILATVSTQL 64 Query 64 TFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGD 123 TFLSYGTT+R+ARRYGAG+ AV EGVQATWLAL +GA+++ +V+ A P+ AIA D Sbjct 65 TFLSYGTTSRSARRYGAGDTDGAVIEGVQATWLALAVGAVLLALVQVLAGPVTRAIAGRD 124 Query 124 GITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYG 183 I AA WLR+A G P IL++++GNGWLRGVQ PL +V+ G G S +LCP+LV+G Sbjct 125 EIATAAESWLRVASFGIPMILLTMSGNGWLRGVQRPRPPLAFVLIGLGLSTVLCPMLVHG 184 Query 184 WLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTL 243 LGLP GL GSA ANL GQ ++ LF GAL+ SLRP +++ AQ+++ RDLIVR+L Sbjct 185 ALGLPELGLVGSAWANLAGQAVSGTLFLGALIRAATSLRPRPSIVRAQVVLGRDLIVRSL 244 Query 244 AFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGH 303 +FQ+C++SA AVAAR GA + AHQ+ LQLW +ALVLDSLAIAAQ+LVGAALGA D Sbjct 245 SFQICFISAGAVAARAGAQYVGAHQIALQLWNFVALVLDSLAIAAQTLVGAALGAKDRIG 304 Query 304 AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGI 363 A+ + WRVT +S A ++AA L S LP +FT D +VL A+ VPWWF+V +P AG+ Sbjct 305 ARRLGWRVTVWSTGFAVVIAAGLAAASGSLPHVFTTDPAVLEALRVPWWFLVAMIPVAGV 364 Query 364 VFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIF 423 VFA+DGVLLGA DAAF+RTAT+ASALVGFLPL+WLS A+GWGLAGIWSGL F+ LR + Sbjct 365 VFALDGVLLGASDAAFLRTATMASALVGFLPLIWLSYAFGWGLAGIWSGLAAFMALRCLT 424 Query 424 VGWRAYSGRWAVTGA 438 V R W GA Sbjct 425 VVLRFSGTTWERVGA 439 >gi|256379827|ref|YP_003103487.1| MATE efflux family protein [Actinosynnema mirum DSM 43827] gi|255924130|gb|ACU39641.1| MATE efflux family protein [Actinosynnema mirum DSM 43827] Length=434 Score = 436 bits (1121), Expect = 4e-120, Method: Compositional matrix adjust. Identities = 263/437 (61%), Positives = 316/437 (73%), Gaps = 10/437 (2%) Query 6 HRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATF 65 R R++ LA PAL VLAAEPLY+L D AVVG LGA+ LAGLA+G ++ V +Q TF Sbjct 4 ERVPARRVVGLAAPALVVLAAEPLYVLVDTAVVGHLGALPLAGLALGGVLFTQVATQLTF 63 Query 66 LSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGI 125 LSYGTTAR AR +GAG R AV EGVQATWLAL +GALV+V+ + A P + + + Sbjct 64 LSYGTTARTARLFGAGRRAEAVAEGVQATWLALAVGALVIVLGQLLAGPATRLLVGDEVV 123 Query 126 TAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWL 185 A A+ WLRIA+ G P +LV++AGNGW+RGVQDT RPLRYV+ G SA+LCPLLV+ Sbjct 124 AAEAVSWLRIALFGAPMVLVTMAGNGWMRGVQDTRRPLRYVLFGNAVSAVLCPLLVH--- 180 Query 186 GLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAF 245 WGL GSAVAN+V Q L+A LF AL+ ERV LRP A++ AQL M RDL++R+LAF Sbjct 181 -TAGWGLEGSAVANVVAQLLSAGLFLRALVVERVPLRPVPALMRAQLGMGRDLVLRSLAF 239 Query 246 QVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAK 305 Q C++SAA+VAAR AA+ AHQVVLQLW LALVLDSLAIAAQS+VGA LGA AK Sbjct 240 QACFLSAASVAARTSVAAVGAHQVVLQLWTFLALVLDSLAIAAQSIVGAFLGADRREDAK 299 Query 306 AVAWRVTAFSLL---AAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAG 362 A +VT + L+ G+L AAL S V+PGLFT D VL I WWF V P AG Sbjct 300 GFARQVTGYGLVFGSCLGVLFAAL---SGVIPGLFTGDAGVLGEIPNAWWFFVALQPIAG 356 Query 363 IVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLI 422 +VFA+DGVLLGAGDAAF+RTAT+ SA GFLPL+WLSLA+GWGL+GIW+GL F+ LRL+ Sbjct 357 VVFALDGVLLGAGDAAFLRTATLLSAAAGFLPLIWLSLAFGWGLSGIWTGLSAFMALRLV 416 Query 423 FVGWRAYSGRWAVTGAA 439 V R SGRWAV GAA Sbjct 417 AVVLRTRSGRWAVPGAA 433 >gi|262202089|ref|YP_003273297.1| MATE efflux family protein [Gordonia bronchialis DSM 43247] gi|262085436|gb|ACY21404.1| MATE efflux family protein [Gordonia bronchialis DSM 43247] Length=467 Score = 431 bits (1108), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 258/449 (58%), Positives = 326/449 (73%), Gaps = 19/449 (4%) Query 8 AGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLS 67 AG R+IA L + AL VL A PLYLL D+AVVGRLG LA LA+ +LVL ++ +Q TFLS Sbjct 15 AGVRRIATLTVSALAVLIAPPLYLLLDLAVVGRLGGDELAALAVATLVLSIISTQLTFLS 74 Query 68 YGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG--- 124 YGTTAR+ARR+GAG+R A+ EG+QA+W+ALG G L+V V A P++ A+ Sbjct 75 YGTTARSARRFGAGDRPGAIREGLQASWIALGAGVLIVAVAYPLAPPVMRALVGTSSPDA 134 Query 125 --ITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVY 182 + A A W+RIA+ G P IL+S+AGNGW+RGVQDT RP+ YVV G +A+L LV+ Sbjct 135 GVVAADAAEWVRIAVFGVPLILLSMAGNGWMRGVQDTRRPVIYVVLGLSVAAVLVVGLVH 194 Query 183 GWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVS--------------LRPDRAVL 228 G PR GL GSA+AN++GQ + LLFA +L E S LRP +V+ Sbjct 195 GVGPFPRLGLPGSAIANVIGQSVTGLLFAARVLRESRSAAGESAADESATGWLRPQWSVI 254 Query 229 GAQLMMARDLIVRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAA 288 AQL+MARDLIVR+L+FQ+C++SAAAVAARFG A +AAHQ+VLQLW ++L LDSLAIAA Sbjct 255 RAQLVMARDLIVRSLSFQICFISAAAVAARFGVAEVAAHQLVLQLWEFMSLFLDSLAIAA 314 Query 289 QSLVGAALGAGDAGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIG 348 Q+LVGAALGAG A +VA RVT SL+AA + A G++++P +FT D ++L AIG Sbjct 315 QALVGAALGAGTVRVAGSVARRVTVVSLVAAAVAAGVFAAGATLIPRIFTSDDAILDAIG 374 Query 349 VPWWFMVVQLPFAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAG 408 VPWWF V LP AGIVFA+DGVLLGAGDAAF+RTAT+A+AL+GFLPL+WLSLA+ WGLAG Sbjct 375 VPWWFFVAMLPIAGIVFALDGVLLGAGDAAFLRTATLAAALLGFLPLIWLSLAFDWGLAG 434 Query 409 IWSGLGTFIVLRLIFVGWRAYSGRWAVTG 437 IWSGL F+++RL+ V WR SGRW G Sbjct 435 IWSGLVVFMLVRLVTVAWRIRSGRWRRVG 463 >gi|333919296|ref|YP_004492877.1| Mate efflux family protein [Amycolicicoccus subflavus DQS3-9A1] gi|333481517|gb|AEF40077.1| Mate efflux family protein [Amycolicicoccus subflavus DQS3-9A1] Length=437 Score = 431 bits (1107), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 261/430 (61%), Positives = 325/430 (76%), Gaps = 6/430 (1%) Query 15 QLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGTTARA 74 +LALPAL VLAAEP+YLL+D AVVGRLG ++LAGLA+G LVL V +Q TFL+YGTTARA Sbjct 3 RLALPALPVLAAEPIYLLYDFAVVGRLGGLALAGLAVGGLVLAQVTTQLTFLTYGTTARA 62 Query 75 ARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAALPWLR 134 +R +GAGNR AAV EG+QATWL + G VVV+V A A P++S + I AAA WLR Sbjct 63 SRYHGAGNRAAAVREGIQATWLGIAAGITVVVLVLAVARPVLSVLTGDADIAAAAESWLR 122 Query 135 IAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRWGLTG 194 I I G P IL+++AGNGWLRGV DT+RPLR+VVAG G+SA+LCP+LV+G G P GL G Sbjct 123 IGIFGAPLILIAMAGNGWLRGVHDTMRPLRFVVAGLGTSAVLCPVLVHGLAGFPALGLPG 182 Query 195 SAVANLVGQWLAALLFAGALLAER------VSLRPDRAVLGAQLMMARDLIVRTLAFQVC 248 SAVAN+VGQ + A F GAL AER +RPD V+ AQL++ RDLI+R+LAFQ C Sbjct 183 SAVANVVGQSITAAFFIGALAAERRAAPAQTPIRPDIGVIRAQLILGRDLILRSLAFQAC 242 Query 249 YVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVA 308 ++SAAAVA+RFGA A+ AHQVVL LW +AL LDSLAIAAQ+++GA LG+G AK A Sbjct 243 FLSAAAVASRFGAGAVGAHQVVLHLWNFVALTLDSLAIAAQAIIGALLGSGMVIAAKEAA 302 Query 309 WRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVD 368 WR+ +S++ A LA A GS+++PG+FT D VL IG WWF V+ +P AG+VFA+D Sbjct 303 WRIMRWSIVFAVCLAGAFAAGSTMVPGIFTADPGVLGHIGEIWWFFVIMIPVAGVVFALD 362 Query 369 GVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRA 428 GVLLG+GDAAF+RT+T+ +ALVGFLPL+WLSL + WGL GIWSGL F++LR V WR Sbjct 363 GVLLGSGDAAFLRTSTLLAALVGFLPLIWLSLVFDWGLHGIWSGLAAFVLLRAGAVVWRT 422 Query 429 YSGRWAVTGA 438 S RWA+ GA Sbjct 423 RSARWAIAGA 432 >gi|302528533|ref|ZP_07280875.1| DNA-damage-inducible protein F [Streptomyces sp. AA4] gi|302437428|gb|EFL09244.1| DNA-damage-inducible protein F [Streptomyces sp. AA4] Length=445 Score = 430 bits (1106), Expect = 2e-118, Method: Compositional matrix adjust. Identities = 262/434 (61%), Positives = 316/434 (73%), Gaps = 4/434 (0%) Query 5 GHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQAT 64 G R R++ LA+PALGVLAAEPLY+L D AVVG LGA+ LAGLA+G +VL V +Q T Sbjct 12 GDRIPPRRVFGLAVPALGVLAAEPLYVLVDTAVVGHLGALPLAGLALGGVVLSQVSTQLT 71 Query 65 FLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG 124 FLSYGTT+R AR +GAG R AV EGVQATWL + +G +++VV + A P+ A++ D Sbjct 72 FLSYGTTSRTARLHGAGRRADAVREGVQATWLGVLVGLVLLVVGQLLAGPIARALSGSDE 131 Query 125 ITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGW 184 I AA+ WLRIA+ G P ILV++AGNGW+RGVQD RPLRYV+AG G SA+LCP+LVY Sbjct 132 IAEAAVSWLRIALFGAPLILVTMAGNGWMRGVQDATRPLRYVLAGNGISAVLCPVLVYA- 190 Query 185 LGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLA 244 GL GL GSA+AN+V Q ++A +F AL+ E+V LRPD AV+ AQL + RDL++R+ A Sbjct 191 AGL---GLEGSAIANIVAQVVSASMFVAALVREKVPLRPDFAVMRAQLGLGRDLVLRSFA 247 Query 245 FQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHA 304 FQ C+VSAAAVAAR A+ AHQVVLQLW LALVLDS+AIAAQSLVGAALGAG A A Sbjct 248 FQACFVSAAAVAARTSTEAVGAHQVVLQLWTFLALVLDSVAIAAQSLVGAALGAGAARQA 307 Query 305 KAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIV 364 + VA ++T + L+ L SVLP FT D VL I WWF V P AG+V Sbjct 308 RGVATQITGYGLVLGCFLGVLFAALWSVLPHAFTSDPGVLGEIPHAWWFFVALQPIAGVV 367 Query 365 FAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFV 424 FA+DGVLLGAGDAAF+RTAT+ SA +GFLPL+WLSLA GWGL GIWSGL F+V RL V Sbjct 368 FALDGVLLGAGDAAFLRTATLVSAGLGFLPLIWLSLALGWGLTGIWSGLSLFMVFRLAAV 427 Query 425 GWRAYSGRWAVTGA 438 R SGRWAV GA Sbjct 428 VARWRSGRWAVVGA 441 >gi|326382944|ref|ZP_08204634.1| MATE efflux family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198534|gb|EGD55718.1| MATE efflux family protein [Gordonia neofelifaecis NRRL B-59395] Length=449 Score = 427 bits (1099), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 240/420 (58%), Positives = 301/420 (72%), Gaps = 1/420 (0%) Query 15 QLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGTTARA 74 +LA AL VL A PLYL+ D+AVVGRLGA LA L + +LVL ++ +Q TFLSYGTTAR+ Sbjct 28 KLASSALVVLIAPPLYLMLDLAVVGRLGATELAALTVATLVLSVISTQLTFLSYGTTARS 87 Query 75 ARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAALPWLR 134 AR +GAG+R A+ EGVQA+W+ALG+G +V + A + A+ + A A WLR Sbjct 88 ARAFGAGDRERAIHEGVQASWIALGVGGAIVAIAWLLAPQITRALVPDPQVAADAASWLR 147 Query 135 IAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRWGLTG 194 IA+ G P IL ++AGNGW+RGVQDT RP+ +VVAG SA+LC LV+G GLPR+GL G Sbjct 148 IAVFGVPLILFAMAGNGWMRGVQDTRRPVYFVVAGLAVSAVLCIGLVHGVGGLPRFGLQG 207 Query 195 SAVANLVGQWLAALLFAGALLAERVS-LRPDRAVLGAQLMMARDLIVRTLAFQVCYVSAA 253 SA ANLVGQ + + F L++ER L PD V+ AQL MARDL++R+L+FQ+C++SAA Sbjct 208 SAWANLVGQSITGVAFVARLVSERTGGLAPDWPVIRAQLTMARDLVLRSLSFQICFISAA 267 Query 254 AVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWRVTA 313 AVAARFG A +AAHQVVLQLW +L+LDSLAIAAQ LVGAALGAG A+ A T Sbjct 268 AVAARFGVAQVAAHQVVLQLWEFSSLLLDSLAIAAQQLVGAALGAGAFHVARRSARHATV 327 Query 314 FSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDGVLLG 373 S + LA L G +++P +FTDD +L A+ PWWF VV LP AG+VFA+DGVLLG Sbjct 328 VSFGVSVALAGVLAAGVTLIPRIFTDDAEILDAMRTPWWFFVVMLPIAGVVFALDGVLLG 387 Query 374 AGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAYSGRW 433 +GDAAF+RTAT+A AL FLPL+WLS + WGLAGIWSGL F+ +RL V WR SG W Sbjct 388 SGDAAFLRTATLAGALGAFLPLIWLSWVFDWGLAGIWSGLLAFMCIRLAAVVWRVRSGAW 447 >gi|335423935|ref|ZP_08552953.1| putative efflux protein, MATE family [Salinisphaera shabanensis E1L3A] gi|334890686|gb|EGM28948.1| putative efflux protein, MATE family [Salinisphaera shabanensis E1L3A] Length=436 Score = 426 bits (1094), Expect = 5e-117, Method: Compositional matrix adjust. Identities = 250/428 (59%), Positives = 311/428 (73%), Gaps = 4/428 (0%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R+I LA+PALGVLAAEPLY+L D AVVG LGA LAGLA+G VL ++ SQ TFLSYGT Sbjct 13 RRILALAIPALGVLAAEPLYVLVDTAVVGHLGAKPLAGLALGGTVLSVLTSQLTFLSYGT 72 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TAR AR YGAG R AV EG QATWLA+ +G V+ + + A ++SA+A + AA Sbjct 73 TARTARLYGAGRRAEAVAEGGQATWLAIFVGLTVLALGQLFAHSMLSALAGNPDVADAAA 132 Query 131 PWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRW 190 WLRIA++G PAIL++LAGNGW+RGVQDTVRPL Y++AG SA+ CP+LVY LG Sbjct 133 SWLRIALIGAPAILITLAGNGWMRGVQDTVRPLYYILAGNILSAIACPVLVYP-LGF--- 188 Query 191 GLTGSAVANLVGQWLAALLFAGALLAERVSLRPDRAVLGAQLMMARDLIVRTLAFQVCYV 250 GL GSA+AN++ Q+ AA LF AL ER +RP A++ AQ+++ RDLI+R+ +FQ+C++ Sbjct 189 GLEGSAMANVLAQYTAASLFLRALRVERAMVRPRWAIMKAQMVLGRDLILRSASFQICFL 248 Query 251 SAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWR 310 SAAAVAAR AAAL AHQ+V QLW L+L+LDSLAIAAQ+L+GA LGA AKAVAW+ Sbjct 249 SAAAVAARKSAAALGAHQIVYQLWVFLSLILDSLAIAAQALIGAELGAARVDRAKAVAWQ 308 Query 311 VTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDGV 370 +T +S LA + VLP LFT+D +VLA I WW V Q P AGIVFA+DGV Sbjct 309 ITRYSFGLGVCLAVLFAALAGVLPRLFTNDAAVLAQIPHAWWLFVAQQPVAGIVFALDGV 368 Query 371 LLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAYS 430 LLGA D F+RT T+A AL FLPL+WLS A+GWGLAGIW GL F+V R++ V WR + Sbjct 369 LLGAADTRFLRTTTLACALGAFLPLIWLSWAFGWGLAGIWVGLTMFLVTRMVAVVWRTRT 428 Query 431 GRWAVTGA 438 G WA+TGA Sbjct 429 GHWAITGA 436 >gi|331698430|ref|YP_004334669.1| MATE efflux family protein [Pseudonocardia dioxanivorans CB1190] gi|326953119|gb|AEA26816.1| MATE efflux family protein [Pseudonocardia dioxanivorans CB1190] Length=454 Score = 422 bits (1084), Expect = 7e-116, Method: Compositional matrix adjust. Identities = 262/440 (60%), Positives = 321/440 (73%), Gaps = 16/440 (3%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R++A+LALPAL VLAAEPLY+L D AVVGRLGA+ LAGLA+ ++ V SQ TFLSYGT Sbjct 16 REVARLALPALPVLAAEPLYVLVDTAVVGRLGALPLAGLAVAGVMFAQVTSQLTFLSYGT 75 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG-ITAAA 129 TARAAR +GAG R AAV EGVQATWLAL +G LVV+ V P V+ G G I AA Sbjct 76 TARAARLHGAGRRSAAVGEGVQATWLALAVG-LVVLAVGQVVAPWVAGALGGSGEIADAA 134 Query 130 LPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 + WLRIA+ G P +LV+LAGNGW+RGV DTVRP+RYV+AG G SAL CP+LV+G G Sbjct 135 VSWLRIALFGAPLVLVTLAGNGWMRGVHDTVRPMRYVLAGNGLSALACPVLVHGIGGWDG 194 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAER--------VSLRPDRAVLGAQLMMARDLIVR 241 WGL GSAVAN+ Q + A+LF ALL ER VSLRP ++ AQL + RDL++R Sbjct 195 WGLEGSAVANVGAQVVVAVLFLVALLRERSAAPGDDPVSLRPHLRLIRAQLGLGRDLVLR 254 Query 242 TLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDA 301 +L+FQ C++SA AVAARFGA ++AAHQ+VLQLW +L LD++AIAAQ+LVG+ALGAG Sbjct 255 SLSFQACFLSATAVAARFGAPSVAAHQIVLQLWTFQSLTLDAVAIAAQALVGSALGAGGV 314 Query 302 GHAKAVAWRVTAFSL---LAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQL 358 G A+AVA ++ + L GI AAL VLPG+FT D +VLA + V WWF Sbjct 315 GRARAVAGQIARYGTVIGLLCGIAFAALYF---VLPGVFTQDAAVLAVVPVAWWFFAALQ 371 Query 359 PFAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIV 418 P G+VFA+DGVLLGAGDAA++RT T+ SA VGFLP++WLSLA+GWGLAGIW+GL F++ Sbjct 372 PVGGLVFALDGVLLGAGDAAYLRTTTLLSAAVGFLPMIWLSLAFGWGLAGIWTGLSLFML 431 Query 419 LRLIFVGWRAYSGRWAVTGA 438 RL V R SGRWAV GA Sbjct 432 GRLAAVTLRTRSGRWAVAGA 451 >gi|325003067|ref|ZP_08124179.1| MATE efflux family protein [Pseudonocardia sp. P1] Length=458 Score = 409 bits (1052), Expect = 3e-112, Method: Compositional matrix adjust. Identities = 260/447 (59%), Positives = 318/447 (72%), Gaps = 12/447 (2%) Query 3 QVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQ 62 V R G R I +LA+PAL VLAAEPLYLL D AVVGRLG + LA LA+ +++ V +Q Sbjct 8 DVRSRGGARDILRLAVPALPVLAAEPLYLLVDTAVVGRLGGLPLASLAVAAVLFAQVTTQ 67 Query 63 ATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASG 122 TFLSYGTTARAAR YGAG R AAVTEGVQATWLA+ +G LV+ + A P+ +A G Sbjct 68 LTFLSYGTTARAARFYGAGRRSAAVTEGVQATWLAVVVGLLVIAAGQLLAAPVAGVLAGG 127 Query 123 DGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVY 182 I A A+ WLRIA+ G P +LV+LAGNGW+RGVQDT RP+ YV+AG G SALLCP LV+ Sbjct 128 GDIAAGAVSWLRIALFGAPLVLVTLAGNGWMRGVQDTRRPMYYVLAGNGLSALLCPFLVH 187 Query 183 GWLGLPRWGLTGSAVANLVGQWLAALLFAGALL--------AERVSLRPDRAVLGAQLMM 234 G WGL GSAVAN+V Q ++A LF AL ++ V PD AVL AQ+ M Sbjct 188 GAGSWDGWGLEGSAVANVVAQAVSAGLFLRALAAERRRAPSSDPVRFAPDAAVLRAQVTM 247 Query 235 ARDLIVRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGA 294 RDL++R+L FQ C++SA AVA+RFGA ++AAHQVVLQLW +LVLD++AIAAQ+LVG+ Sbjct 248 GRDLVIRSLGFQACFLSATAVASRFGAESVAAHQVVLQLWVFQSLVLDAVAIAAQALVGS 307 Query 295 ALGAGDAGH----AKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVP 350 ALGA A+AVA RVT + LL + VLPG+FT D +VLA I Sbjct 308 ALGAARDREGTAGARAVAARVTRYGLLLGCVFGVVFAALYPVLPGVFTTDAAVLATIPAA 367 Query 351 WWFMVVQLPFAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIW 410 WWF P AG+VFA+DGVLLGAGDAAF+RT T+ +A+ GFLPL+WLSLA+GWGLAGIW Sbjct 368 WWFFTALQPVAGVVFALDGVLLGAGDAAFLRTTTLLAAVCGFLPLIWLSLAFGWGLAGIW 427 Query 411 SGLGTFIVLRLIFVGWRAYSGRWAVTG 437 +GL F+V+RL+ VG RA SGRWAV G Sbjct 428 TGLAMFMVVRLVAVGLRARSGRWAVPG 454 >gi|343927050|ref|ZP_08766538.1| hypothetical protein GOALK_077_00740 [Gordonia alkanivorans NBRC 16433] gi|343763108|dbj|GAA13464.1| hypothetical protein GOALK_077_00740 [Gordonia alkanivorans NBRC 16433] Length=398 Score = 374 bits (959), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 222/401 (56%), Positives = 284/401 (71%), Gaps = 23/401 (5%) Query 55 VLGLVGSQATFLSYGTTARAARRYGAGNRVAAVTEGVQATWL-----------ALGLGAL 103 +L +V +Q TFLSYGTTAR+ARR+GAG+R AV EGVQA+W+ + L + Sbjct 1 MLSIVSTQLTFLSYGTTARSARRFGAGDRAGAVREGVQASWIAVAVGVVIVAVSYPLAPM 60 Query 104 VVVVVEATATPLVSAIASGDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPL 163 V+ ++ ++P + A A W+RIA+ G P IL+S+AGNGW+RGVQ+T RP+ Sbjct 61 VMRLLVGASSP------ESAAVAADAAHWMRIAMFGVPLILLSMAGNGWMRGVQETRRPV 114 Query 164 RYVVAGFGSSALLCPLLVYGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVS--- 220 YVV G +A+L LV+G PR GL GSAVAN++GQ + +LFA ++ E S Sbjct 115 VYVVIGLSLAAVLVVGLVHGIGPFPRLGLPGSAVANVIGQGVTGVLFAVRVIREAGSSPE 174 Query 221 ---LRPDRAVLGAQLMMARDLIVRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLL 277 RPDR ++ AQL MARDLIVR+L+FQ+C+VSAAAVAARFG A +AAHQ+VLQLW + Sbjct 175 SKGFRPDRTIIVAQLAMARDLIVRSLSFQICFVSAAAVAARFGVAQVAAHQLVLQLWEFM 234 Query 278 ALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLF 337 AL LDS+AIAAQ+LVGAALG G A VA RVT S++AA +AA G++++P +F Sbjct 235 ALFLDSVAIAAQALVGAALGGGRLKVADTVARRVTGVSVVAATAMAAVFAAGATLIPRVF 294 Query 338 TDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVW 397 T D +VL AIGVPWWF V LP AG+VFA+DGVLLG+GDAAF+RTAT+ ALVGFLPL+W Sbjct 295 TSDDAVLDAIGVPWWFFVGMLPIAGVVFALDGVLLGSGDAAFLRTATLTGALVGFLPLIW 354 Query 398 LSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAYSGRWAVTGA 438 LSL + WGLAG+WSGL F+V+RL V WR SGRW TGA Sbjct 355 LSLIFDWGLAGVWSGLVVFMVVRLATVVWRIRSGRWRQTGA 395 >gi|227833351|ref|YP_002835058.1| DNA-damage-inducible protein F [Corynebacterium aurimucosum ATCC 700975] gi|262184337|ref|ZP_06043758.1| DNA-damage-inducible protein F [Corynebacterium aurimucosum ATCC 700975] gi|227454367|gb|ACP33120.1| DNA-damage-inducible protein F [Corynebacterium aurimucosum ATCC 700975] Length=432 Score = 372 bits (955), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 215/434 (50%), Positives = 289/434 (67%), Gaps = 7/434 (1%) Query 2 SQVGHRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGS 61 S+ + ++ +LA+PALGVLAA PLYLL D AVVGRLGA LA L + + +V + Sbjct 3 SEQPVKVSAAEVFRLAVPALGVLAAMPLYLLLDTAVVGRLGAEDLASLGAAATLHSVVTT 62 Query 62 QATFLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIAS 121 Q TFLSYGTTARA+R +GAG R AV EGVQATW+A+G+G ++ V++ A + + Sbjct 63 QLTFLSYGTTARASRLFGAGKREEAVAEGVQATWVAVGVGMVLAVIMWLFAGVFATWLTG 122 Query 122 GDGITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLV 181 WLRIA + P L+++AGNGW+RGVQ+T +PL + +AG A+ P+ V Sbjct 123 NPDTARGTAQWLRIAAVAIPFTLINMAGNGWMRGVQNTRKPLYFTLAGMVPGAIAVPIFV 182 Query 182 YGWLGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDR-AVLGAQLMMARDLIV 240 + WGL GSA+A ++G + A F L E R +V+ QL++ RDLIV Sbjct 183 H------FWGLPGSALATVLGMGIIAAFFVAELRREHTGSWEIRWSVVRRQLVLGRDLIV 236 Query 241 RTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGD 300 R+L+FQV ++SAAAVA+R G A LAAHQ+++Q+W L+LVLDSLAIAAQ+L GAALGAG Sbjct 237 RSLSFQVAFLSAAAVASRIGTAQLAAHQIMMQMWNFLSLVLDSLAIAAQALTGAALGAGS 296 Query 301 AGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPF 360 A +A+ V +VT +S + LAA LGLGS+ +P +FT VL I PWW M + Sbjct 297 ARYARTVGTKVTLYSTSFSLALAAVLGLGSAFIPRIFTTSPEVLEVISGPWWVMTFLVII 356 Query 361 AGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLR 420 G+VFA+DGVLLGAGDAAF+RT T+AS L+GFLP VWL+ +G GL G+W G+ FI++R Sbjct 357 GGVVFALDGVLLGAGDAAFLRTLTLASVLLGFLPGVWLAFVFGTGLTGVWGGIAAFILIR 416 Query 421 LIFVGWRAYSGRWA 434 ++ V R YS RWA Sbjct 417 MVGVVCRFYSMRWA 430 >gi|311739674|ref|ZP_07713509.1| MATE efflux family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305490|gb|EFQ81558.1| MATE efflux family protein [Corynebacterium pseudogenitalium ATCC 33035] Length=446 Score = 370 bits (951), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 215/427 (51%), Positives = 286/427 (67%), Gaps = 9/427 (2%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R++ LA PALGVLAA PLYLL D AVVGRLGA LA LA + + +V +Q TFLSYGT Sbjct 23 REVFGLAFPALGVLAAMPLYLLLDTAVVGRLGAQELASLAAATTIHSVVTTQLTFLSYGT 82 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TAR+AR +G+G R AAV EGVQAT++ALG+G L+ V++ A+ +GD TAA Sbjct 83 TARSARLFGSGKREAAVAEGVQATYVALGVGGLLAVIMWIFGGVFARAL-TGDPTTAAGT 141 Query 131 P-WLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 WLRIA L P LV +AGNGW+RGVQDT +PL + ++G A+ P+ V+ Sbjct 142 ALWLRIAALAIPVTLVEMAGNGWMRGVQDTKKPLYFTLSGMIPGAIAVPIFVH------F 195 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAERV-SLRPDRAVLGAQLMMARDLIVRTLAFQVC 248 WGL GSA+A ++G + A LF L E S + V+ QL++ RDLI+R+ +FQV Sbjct 196 WGLAGSAIATVLGMSIIAALFVRELHKEHTGSWQFQWHVVREQLILGRDLILRSASFQVA 255 Query 249 YVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVA 308 +++A AV +R G A+LA HQ+++QLW ++L+LDSLAIAAQSL GAALGAG A HA++V Sbjct 256 FLTATAVVSRVGTASLAGHQIMMQLWNFMSLILDSLAIAAQSLTGAALGAGSARHARSVG 315 Query 309 WRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVD 368 +V +S + +G+LA G+ ++P +FT VL AI PWW +V + G+VFA D Sbjct 316 SKVALYSTIFSGLLAVVFAAGAGIIPRIFTSSPEVLDAISKPWWILVAMVIGGGVVFAFD 375 Query 369 GVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRA 428 GVLLGAGDAAF+RT T++S LVGFLP V L+ G GL G+W GL FI R++ V +R Sbjct 376 GVLLGAGDAAFLRTLTISSVLVGFLPGVILAHFMGTGLTGVWCGLAAFIAFRMVGVVYRF 435 Query 429 YSGRWAV 435 S +WAV Sbjct 436 RSMKWAV 442 >gi|255325202|ref|ZP_05366308.1| Na+-driven multidrug efflux pump [Corynebacterium tuberculostearicum SK141] gi|255297767|gb|EET77078.1| Na+-driven multidrug efflux pump [Corynebacterium tuberculostearicum SK141] Length=438 Score = 370 bits (951), Expect = 2e-100, Method: Compositional matrix adjust. Identities = 215/427 (51%), Positives = 287/427 (68%), Gaps = 9/427 (2%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R++ LA PALGVLAA PLYLL D AVVGRLGA LA LA + + +V +Q TFLSYGT Sbjct 15 REVFGLAFPALGVLAAMPLYLLLDTAVVGRLGAQELASLAAATTIHSVVTTQLTFLSYGT 74 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TAR+AR +G+G R AAV EGVQAT++ALG+G L+ V++ A+ +GD TAA Sbjct 75 TARSARLFGSGKREAAVAEGVQATYVALGVGGLLAVIMWIFGGVFARAL-TGDPTTAAGT 133 Query 131 P-WLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 WLRIA L P LV +AGNGW+RGVQDT +PL + ++G A+ P+ V+ Sbjct 134 ALWLRIAALAIPVTLVEMAGNGWMRGVQDTKKPLYFTLSGMIPGAIAVPIFVH------F 187 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAERV-SLRPDRAVLGAQLMMARDLIVRTLAFQVC 248 WGL GSA+A ++G + A LF L E S + V+ QL++ RDLI+R+ +FQV Sbjct 188 WGLAGSAIATVLGMSIIAALFVRELHKEHTGSWQFQWHVVREQLILGRDLILRSASFQVA 247 Query 249 YVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVA 308 +++A AV +R G A+LA HQ+++QLW ++L+LDSLAIAAQ+L GAALGAG A HA++V Sbjct 248 FLTATAVVSRVGTASLAGHQIMMQLWNFMSLILDSLAIAAQTLTGAALGAGSARHARSVG 307 Query 309 WRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVD 368 +V +S + +G+LAA G+ ++P +FT VL AI PWW +V + G+VFA D Sbjct 308 SKVALYSTIFSGLLAAVFAAGAGIIPRIFTSSPEVLDAISQPWWILVAMVIGGGVVFAFD 367 Query 369 GVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRA 428 GVLLGAGDAAF+RT T++S LVGFLP V L+ G GL G+W GL FI R++ V +R Sbjct 368 GVLLGAGDAAFLRTLTISSVLVGFLPGVILAHFMGTGLTGVWCGLAAFIAFRMVGVVYRF 427 Query 429 YSGRWAV 435 S +WAV Sbjct 428 RSMKWAV 434 >gi|172040533|ref|YP_001800247.1| DNA-damage-inducible protein F [Corynebacterium urealyticum DSM 7109] gi|171851837|emb|CAQ04813.1| DNA-damage-inducible protein F [Corynebacterium urealyticum DSM 7109] Length=456 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 231/438 (53%), Positives = 294/438 (68%), Gaps = 14/438 (3%) Query 6 HRAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATF 65 G R+I LA PAL VLAA PLYLL D AVVGRLGA SLAGLA G++VL V +Q TF Sbjct 11 EDVGTRKILALAWPALIVLAATPLYLLLDTAVVGRLGATSLAGLATGAVVLSTVTTQLTF 70 Query 66 LSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG- 124 LSYGTTARAAR +GAG AV EG+QA+W+ALG+GA++ V + +P +S SGD Sbjct 71 LSYGTTARAARHFGAGRTTDAVYEGIQASWIALGVGAVLAVGLFFF-SPTISLALSGDAE 129 Query 125 ITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGW 184 + A A WL++ L L +AGNGWLRG+ +T PL +AG A+ PL V Sbjct 130 VAAEATNWLKVTSLSVIPALFIMAGNGWLRGLSNTRLPLYSTLAGVIPMAVTVPLAVR-- 187 Query 185 LGLPRWGLTGSAVANLVGQWLAALLFAGAL------LAERVSLRPDRAVLGAQLMMARDL 238 RWGL GSA+AN+ G+ + A F GAL + S+RP+ V+ QL M RDL Sbjct 188 ----RWGLVGSAIANVAGELIIAACFLGALVFHWRKFGDHRSMRPNGRVIRTQLAMGRDL 243 Query 239 IVRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGA 298 I R+L+FQ ++SAAAVA R GA ALAAHQ++LQLW L++L+LDS+AIAAQ+LVGAALGA Sbjct 244 IARSLSFQAAFLSAAAVAGRIGAPALAAHQILLQLWNLVSLLLDSVAIAAQALVGAALGA 303 Query 299 GDAGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQL 358 G A A++VA +V FSL A+ +LA GLGS +P LFT D VL IG PWW V + Sbjct 304 GSARAARSVARQVLKFSLGASVVLAVFFGLGSRAVPQLFTADAPVLDQIGGPWWVFVSII 363 Query 359 PFAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIV 418 G VFA+DGVLLGA D AF+R A++A+A++GF+PLVWLSLA+ GL G+W+GL F++ Sbjct 364 VIGGAVFALDGVLLGAADVAFLRNASIAAAVIGFIPLVWLSLAFDVGLIGVWAGLAAFML 423 Query 419 LRLIFVGWRAYSGRWAVT 436 +R V WR W V+ Sbjct 424 IRFGAVLWRYRGDAWTVS 441 >gi|237785722|ref|YP_002906427.1| DNA-damage-inducible protein F [Corynebacterium kroppenstedtii DSM 44385] gi|237758634|gb|ACR17884.1| DNA-damage-inducible protein F [Corynebacterium kroppenstedtii DSM 44385] Length=448 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 218/431 (51%), Positives = 286/431 (67%), Gaps = 10/431 (2%) Query 12 QIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGTT 71 +I +ALP+LGVLAA P+YLLFD AVVGRLG LA LA + +L V +Q TFLSYGTT Sbjct 23 KILSIALPSLGVLAATPIYLLFDTAVVGRLGKTDLAALAAATTILAQVTTQLTFLSYGTT 82 Query 72 ARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAALP 131 ARA R YGAG R ++ EG+Q+TW+A+ +G + V+ A L + +A G+ A Sbjct 83 ARAGRFYGAGRRDKSIQEGMQSTWIAVLVGIALAAVIWILAPVLTNWLADDPGVGKEATR 142 Query 132 WLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRWG 191 WLR+A P L+++AGNGWLR VQ+ PL + +AG G + +L P+LV R G Sbjct 143 WLRVASPAVPLTLMTMAGNGWLRAVQNARYPLYFTLAGVGPALILVPILVM------RLG 196 Query 192 LTGSAVANLVGQWLAALLFAGALLAE----RVSLRPDRAVLGAQLMMARDLIVRTLAFQV 247 + GSA+AN+ G+ + +L F L+ E S +P +++ QL+M RDLI R+L+FQ+ Sbjct 197 IVGSALANVTGETITSLCFLVCLIRENSKYENSWKPRWSIMKDQLVMGRDLIARSLSFQL 256 Query 248 CYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAV 307 ++SAAAVA RFGAA+LAAHQV+LQLW L +VLDSLAIAAQ+ VGAALGAG + +AKAV Sbjct 257 SFISAAAVAGRFGAASLAAHQVLLQLWNFLTMVLDSLAIAAQAFVGAALGAGQSTNAKAV 316 Query 308 AWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAV 367 + +S L A +LA + G +P FT SVL A+ PWW +VV + G VFA+ Sbjct 317 GRSIIKWSSLFAVVLAGGMSAGYYWIPRQFTHSESVLDAMAGPWWQLVVLVLLGGFVFAL 376 Query 368 DGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWR 427 DG+LLGAGDA F+R AT+ SALVGFLPL W+SL+ GWGL G+W GL TF + RL R Sbjct 377 DGILLGAGDAIFLRNATLVSALVGFLPLTWISLSQGWGLVGVWWGLITFFLFRLATTTLR 436 Query 428 AYSGRWAVTGA 438 G WA GA Sbjct 437 FLRGNWARVGA 447 >gi|227504831|ref|ZP_03934880.1| DNA-damage-inducible protein F [Corynebacterium striatum ATCC 6940] gi|227198522|gb|EEI78570.1| DNA-damage-inducible protein F [Corynebacterium striatum ATCC 6940] Length=424 Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 218/425 (52%), Positives = 280/425 (66%), Gaps = 7/425 (1%) Query 12 QIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGTT 71 ++ +LA PALGVLAA PLYLL D AVVGRLGA LA L + + +V +Q TFLSYGTT Sbjct 5 EVFRLAFPALGVLAAMPLYLLLDTAVVGRLGAHQLAALGAAATIHTMVTTQLTFLSYGTT 64 Query 72 ARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAALP 131 ARA+R +GAG + AV EGVQAT++ALG+G + V++ A + Sbjct 65 ARASRLFGAGKKNEAVAEGVQATYVALGVGMSLAVIMWIGAGHFAQWLTGNPETAQDTAL 124 Query 132 WLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRWG 191 WLRIA P L+ +AGNGW+RGVQ+TV+PL + +AG A+ PL V+ +WG Sbjct 125 WLRIAAFAIPLNLIEMAGNGWMRGVQNTVKPLIFTLAGLIPGAIAVPLFVH------QWG 178 Query 192 LTGSAVANLVGQWLAALLFAGALLAERV-SLRPDRAVLGAQLMMARDLIVRTLAFQVCYV 250 L GSA A ++G + A LF L E V S R V+ QL++ RDLIVR+ +FQV ++ Sbjct 179 LAGSAWATVLGMAIMASLFLWELHREHVGSWRLQWGVVKRQLVLGRDLIVRSASFQVAFL 238 Query 251 SAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVAWR 310 SAAAVA+RFG A LAAHQ+++QLW L+LVLDSLAIAAQ+L GAALGAG A HA++V + Sbjct 239 SAAAVASRFGTAQLAAHQIMIQLWNFLSLVLDSLAIAAQALTGAALGAGSAKHARSVGTK 298 Query 311 VTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVDGV 370 VT +S A L A L LG ++P LFT D VL I VPW+ M+ + G+VFA+DGV Sbjct 299 VTFYSTAFALGLGAVLALGIGIIPALFTTDAVVLEVIRVPWFIMIAMVVLGGVVFALDGV 358 Query 371 LLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRAYS 430 LLGA DAAF+RT T+ S L GFLP VW + A G GL G+W GL F+ +R + V +R S Sbjct 359 LLGASDAAFLRTLTIVSVLCGFLPGVWAAYALGAGLPGVWCGLALFVFIRFLGVVYRFRS 418 Query 431 GRWAV 435 RWAV Sbjct 419 MRWAV 423 >gi|306836344|ref|ZP_07469323.1| MATE efflux family protein [Corynebacterium accolens ATCC 49726] gi|304567779|gb|EFM43365.1| MATE efflux family protein [Corynebacterium accolens ATCC 49726] Length=436 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 213/429 (50%), Positives = 285/429 (67%), Gaps = 13/429 (3%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R++ LA PALGVLAA PLYLL D AVVGRLGA LA LA + + +V +Q TFLSYGT Sbjct 14 REVFGLAFPALGVLAAMPLYLLLDTAVVGRLGAQELASLAAATTIHTVVTTQLTFLSYGT 73 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TAR++R +GAG R AV EGVQAT++ALG+G L+ +++ + +GD TAA Sbjct 74 TARSSRLFGAGKRAEAVAEGVQATYVALGVGGLLAIIMWIFGGVFAQWL-TGDPTTAAGT 132 Query 131 P-WLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 WLRIA L P LV +AGNGW+RGVQ+T +PL + +AG A+ P VY W Sbjct 133 ALWLRIAALAIPVTLVEMAGNGWMRGVQNTKKPLYFTLAGMIPGAIAVPAFVY-W----- 186 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAERV---SLRPDRAVLGAQLMMARDLIVRTLAFQ 246 WGL GSA+A ++G + A LF L + R D ++ QL++ RDLI+R+ +FQ Sbjct 187 WGLAGSAIATVMGMSIIASLFVRELYKQHKGSWKFRWD--IVRKQLILGRDLILRSASFQ 244 Query 247 VCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKA 306 V +++A AV +R G AAL HQ+++QLW ++L+LDSLAIAAQ+L GAALGAG A HA++ Sbjct 245 VAFLTATAVVSRVGTAALGGHQIMMQLWNFMSLILDSLAIAAQALTGAALGAGSARHARS 304 Query 307 VAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFA 366 V +V +S + + LA G+ V+P +FT + V+ A+ PWW +V + G+VFA Sbjct 305 VGSKVVMYSTIFSAFLALVFAAGAGVIPRVFTSSQEVIDAMSQPWWILVGMVIAGGVVFA 364 Query 367 VDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGW 426 +DGVLLGAGDAAF+R+ T+AS L+GFLP V L+ A G GL G+W GL FI RLI V + Sbjct 365 LDGVLLGAGDAAFLRSLTIASVLLGFLPGVLLAHAMGTGLTGVWCGLAAFISFRLIGVAY 424 Query 427 RAYSGRWAV 435 R YS +WAV Sbjct 425 RFYSMKWAV 433 >gi|334563204|ref|ZP_08516195.1| DNA-damage-inducible protein F [Corynebacterium bovis DSM 20582] Length=483 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 243/438 (56%), Positives = 302/438 (69%), Gaps = 14/438 (3%) Query 7 RAGGRQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFL 66 RAG R+I LA PAL VLAA PLYLL+D AVVGRLGA+ LA LA G+ VL V +Q TFL Sbjct 5 RAGTREILGLAWPALIVLAATPLYLLWDTAVVGRLGAVDLAALAAGATVLAQVTTQLTFL 64 Query 67 SYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG-I 125 SYGTTAR+ARR+GAG+R AV EGVQATW+ALG+ +V+ VV A P + + +GD + Sbjct 65 SYGTTARSARRFGAGDRTGAVYEGVQATWVALGV-GVVLAVVVGVAAPWICRVLTGDAAV 123 Query 126 TAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWL 185 A A WLR+ + LV++AGNGWLRG DT RPL + + G A++ P+ V Sbjct 124 AADATRWLRVVSVAVVPALVTMAGNGWLRGTADTRRPLYFTLVGVVPMAVIVPVAVA--- 180 Query 186 GLPRWGLTGSAVANLVGQWLAALLFAGALL------AERVSLRPDRAVLGAQLMMARDLI 239 R GL GSA A + G+ L AL F GAL+ + +RP +V+G QL++ RDLI Sbjct 181 ---RVGLVGSAYATVTGETLTALCFLGALVVNWRRHGDGRPVRPQWSVIGPQLVLGRDLI 237 Query 240 VRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAG 299 VR+L+FQV +VSAAAVA R G AALAAHQV+LQLW L+LVLDS+A+AAQ+LVGAALG+G Sbjct 238 VRSLSFQVAFVSAAAVAGRIGPAALAAHQVMLQLWNFLSLVLDSVAVAAQALVGAALGSG 297 Query 300 DAGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLP 359 A A++V V FS +A +LAA L G +V+P LFT D VLA + VPWW +VV Sbjct 298 SARAARSVGATVLRFSTVAGVVLAALLAAGHTVVPALFTTDADVLATMAVPWWLLVVLAL 357 Query 360 FAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVL 419 G+VFA+DGVLLGA D AF+R ATV S +VGF+PLVWLSLA+ WGL G+W GL F+ L Sbjct 358 VGGVVFALDGVLLGASDVAFLRNATVVSVVVGFIPLVWLSLAFDWGLTGVWCGLLAFLCL 417 Query 420 RLIFVGWRAYSGRWAVTG 437 RL V R SGRWA G Sbjct 418 RLAAVLARYRSGRWARVG 435 >gi|227503413|ref|ZP_03933462.1| DNA-damage-inducible protein F [Corynebacterium accolens ATCC 49725] gi|227075916|gb|EEI13879.1| DNA-damage-inducible protein F [Corynebacterium accolens ATCC 49725] Length=436 Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 212/427 (50%), Positives = 284/427 (67%), Gaps = 9/427 (2%) Query 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70 R++ LA PALGVLAA PLYLL D AVVGRLGA LA LA + + +V +Q TFLSYGT Sbjct 14 REVFGLAFPALGVLAAMPLYLLLDTAVVGRLGAQELASLAAATTIHTVVTTQLTFLSYGT 73 Query 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130 TAR++R +GAG R AV EGVQAT++ALG+G L+ +++ + +GD TAA Sbjct 74 TARSSRLFGAGKRAEAVAEGVQATYVALGVGGLLAIIMWIFGGVFAQWL-TGDATTAAGT 132 Query 131 P-WLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPR 189 WLRIA L P LV +AGNGW+RGVQ+T +PL + +AG A+ P VY W Sbjct 133 ALWLRIAALAIPVTLVEMAGNGWMRGVQNTKKPLYFTLAGMIPGAIAVPAFVY-W----- 186 Query 190 WGLTGSAVANLVGQWLAALLFAGALLAERVSLRPDR-AVLGAQLMMARDLIVRTLAFQVC 248 WGL GSA+A ++G + A LF L + R ++ QL++ RDLI+R+ +FQV Sbjct 187 WGLAGSAIATVMGMSIIASLFVRELYKQHEGSWAFRWHIVREQLILGRDLILRSASFQVA 246 Query 249 YVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGAGDAGHAKAVA 308 +++A AV +R G AAL HQ+++QLW ++L+LDSLAIAAQ+L GAALGAG A HA++V Sbjct 247 FLTATAVVSRVGTAALGGHQIMMQLWNFMSLILDSLAIAAQALTGAALGAGSARHARSVG 306 Query 309 WRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQLPFAGIVFAVD 368 +V +S + + LA G+ V+P +FT + V+ A+ PWW +V + G+VFA+D Sbjct 307 SKVVMYSTIFSAFLALVFAAGAGVIPRVFTSSQEVIDAMSQPWWILVGMVIAGGVVFALD 366 Query 369 GVLLGAGDAAFMRTATVASALVGFLPLVWLSLAYGWGLAGIWSGLGTFIVLRLIFVGWRA 428 GVLLGAGDAAF+R+ T+AS L+GFLP V L+ A G GL G+W GL FI RLI V +R Sbjct 367 GVLLGAGDAAFLRSLTIASVLLGFLPGVLLAHAMGTGLTGVWCGLAAFISFRLIGVVYRF 426 Query 429 YSGRWAV 435 YS +WAV Sbjct 427 YSMKWAV 433 Lambda K H 0.326 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 900442926544 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40