BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2838c
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609975|ref|NP_217354.1| ribosome-binding factor A [Mycobact... 359 8e-98
gi|340627831|ref|YP_004746283.1| putative ribosome-binding facto... 356 8e-97
gi|306781028|ref|ZP_07419365.1| putative ribosome-binding factor... 339 1e-91
gi|289571026|ref|ZP_06451253.1| ribosome-binding factor A rbfA [... 285 3e-75
gi|183981908|ref|YP_001850199.1| ribosome-binding factor a RbfA ... 227 5e-58
gi|118617683|ref|YP_906015.1| ribosome-binding factor A [Mycobac... 226 2e-57
gi|120403306|ref|YP_953135.1| ribosome-binding factor A [Mycobac... 212 2e-53
gi|118472364|ref|YP_886966.1| ribosome-binding factor A [Mycobac... 212 2e-53
gi|240171287|ref|ZP_04749946.1| ribosome-binding factor A [Mycob... 209 2e-52
gi|145224618|ref|YP_001135296.1| ribosome-binding factor A [Myco... 208 3e-52
gi|15827817|ref|NP_302080.1| ribosome-binding factor A [Mycobact... 207 5e-52
gi|254823209|ref|ZP_05228210.1| ribosome-binding factor A [Mycob... 204 6e-51
gi|108799050|ref|YP_639247.1| ribosome-binding factor A [Mycobac... 200 7e-50
gi|41409004|ref|NP_961840.1| ribosome-binding factor A [Mycobact... 198 3e-49
gi|226366094|ref|YP_002783877.1| ribosome-binding factor A [Rhod... 195 2e-48
gi|169630212|ref|YP_001703861.1| ribosome-binding factor A (RbfA... 191 5e-47
gi|296171630|ref|ZP_06852844.1| ribosome-binding factor A [Mycob... 190 8e-47
gi|342858331|ref|ZP_08714986.1| ribosome-binding factor A [Mycob... 190 1e-46
gi|111023605|ref|YP_706577.1| ribosome-binding factor A [Rhodoco... 189 1e-46
gi|226306121|ref|YP_002766081.1| ribosome-binding factor A [Rhod... 189 2e-46
gi|312139331|ref|YP_004006667.1| ribosome binding factor a rbfa ... 181 4e-44
gi|305681303|ref|ZP_07404110.1| ribosome-binding factor A [Coryn... 179 2e-43
gi|227549054|ref|ZP_03979103.1| ribosome-binding factor A [Coryn... 178 4e-43
gi|302528538|ref|ZP_07280880.1| ribosome-binding factor A [Strep... 177 4e-43
gi|333919294|ref|YP_004492875.1| ribosome-binding factor A [Amyc... 177 6e-43
gi|225021168|ref|ZP_03710360.1| hypothetical protein CORMATOL_01... 177 6e-43
gi|333991202|ref|YP_004523816.1| ribosome-binding factor a RbfA ... 176 1e-42
gi|256379829|ref|YP_003103489.1| ribosome-binding factor A [Acti... 175 2e-42
gi|262202087|ref|YP_003273295.1| ribosome-binding factor A [Gord... 174 4e-42
gi|213964678|ref|ZP_03392878.1| ribosome-binding factor A [Coryn... 171 5e-41
gi|300788181|ref|YP_003768472.1| ribosome-binding factor A [Amyc... 169 2e-40
gi|331698433|ref|YP_004334672.1| ribosome-binding factor A [Pseu... 168 3e-40
gi|337290994|ref|YP_004630015.1| ribosome-binding factor A [Cory... 167 8e-40
gi|300858697|ref|YP_003783680.1| ribosome-binding factor A [Cory... 167 8e-40
gi|343927052|ref|ZP_08766540.1| ribosome-binding factor A [Gordo... 167 9e-40
gi|38234057|ref|NP_939824.1| ribosome-binding factor A [Coryneba... 165 3e-39
gi|296139431|ref|YP_003646674.1| ribosome-binding factor A [Tsuk... 165 3e-39
gi|300780966|ref|ZP_07090820.1| ribosome-binding factor A [Coryn... 164 7e-39
gi|336325787|ref|YP_004605753.1| ribosome-binding factor A [Cory... 163 8e-39
gi|227503411|ref|ZP_03933460.1| ribosome-binding factor A [Coryn... 163 1e-38
gi|325003070|ref|ZP_08124182.1| ribosome-binding factor A [Pseud... 162 2e-38
gi|227833353|ref|YP_002835060.1| Ribosome-binding factor A [Cory... 160 7e-38
gi|311739676|ref|ZP_07713511.1| ribosome-binding factor A [Coryn... 160 7e-38
gi|255325204|ref|ZP_05366310.1| ribosome-binding factor A [Coryn... 160 9e-38
gi|326382942|ref|ZP_08204632.1| ribosome-binding factor A [Gordo... 160 9e-38
gi|134102371|ref|YP_001108032.1| ribosome-binding factor A [Sacc... 160 1e-37
gi|19553188|ref|NP_601190.1| ribosome-binding factor A [Coryneba... 156 1e-36
gi|227488655|ref|ZP_03918971.1| ribosome-binding factor A [Coryn... 156 1e-36
gi|296117677|ref|ZP_06836261.1| ribosome-binding factor A [Coryn... 156 1e-36
gi|145295888|ref|YP_001138709.1| ribosome-binding factor A [Cory... 156 1e-36
>gi|15609975|ref|NP_217354.1| ribosome-binding factor A [Mycobacterium tuberculosis H37Rv]
gi|15842379|ref|NP_337416.1| ribosome-binding factor A [Mycobacterium tuberculosis CDC1551]
gi|31794015|ref|NP_856508.1| ribosome-binding factor A [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=183
Score = 359 bits (922), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH
Sbjct 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD
Sbjct 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR 180
ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR
Sbjct 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR 180
Query 181 PKE 183
PKE
Sbjct 181 PKE 183
>gi|340627831|ref|YP_004746283.1| putative ribosome-binding factor A RBFA [Mycobacterium canettii
CIPT 140010059]
gi|340006021|emb|CCC45191.1| putative ribosome-binding factor A RBFA (P15B protein) [Mycobacterium
canettii CIPT 140010059]
Length=183
Score = 356 bits (914), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 182/183 (99%), Positives = 182/183 (99%), Gaps = 0/183 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH
Sbjct 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD
Sbjct 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR 180
ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSD PEAVEAPLTCGGDTGDDDR
Sbjct 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDRPEAVEAPLTCGGDTGDDDR 180
Query 181 PKE 183
PKE
Sbjct 181 PKE 183
>gi|306781028|ref|ZP_07419365.1| putative ribosome-binding factor A [Mycobacterium tuberculosis
SUMu002]
gi|308326163|gb|EFP15014.1| putative ribosome-binding factor A [Mycobacterium tuberculosis
SUMu002]
Length=176
Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/173 (100%), Positives = 173/173 (100%), Gaps = 0/173 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH
Sbjct 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD
Sbjct 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGG 173
ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGG
Sbjct 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGG 173
>gi|289571026|ref|ZP_06451253.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T17]
gi|289544780|gb|EFD48428.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T17]
Length=143
Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/143 (99%), Positives = 143/143 (100%), Gaps = 0/143 (0%)
Query 41 VTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLD 100
+TADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLD
Sbjct 1 MTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLD 60
Query 101 TISDSVHRMDELLARARAADADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSD 160
TISDSVHRMDELLARARAADADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSD
Sbjct 61 TISDSVHRMDELLARARAADADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSD 120
Query 161 GPEAVEAPLTCGGDTGDDDRPKE 183
GPEAVEAPLTCGGDTGDDDRPKE
Sbjct 121 GPEAVEAPLTCGGDTGDDDRPKE 143
>gi|183981908|ref|YP_001850199.1| ribosome-binding factor a RbfA [Mycobacterium marinum M]
gi|238690923|sp|B2HKS3.1|RBFA_MYCMM RecName: Full=Ribosome-binding factor A
gi|183175234|gb|ACC40344.1| ribosome-binding factor a RbfA [Mycobacterium marinum M]
Length=175
Score = 227 bits (579), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/164 (86%), Positives = 144/164 (88%), Gaps = 0/164 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI IVASAIEYEIKDPGL GVTITDAKVTADLHDATVYYTVMG TL
Sbjct 1 MADPARARRLAKRITTIVASAIEYEIKDPGLVGVTITDAKVTADLHDATVYYTVMGPTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ A AAAALERAKGVLRTKVGAGTGVRFTPTLTFT D SD+VHRMDELLARARAAD
Sbjct 61 DEPDYAAAAAALERAKGVLRTKVGAGTGVRFTPTLTFTRDVTSDTVHRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEA 164
ADLARVRVGAKPAGEADPYRD GS + GGL IRTSDG EA
Sbjct 121 ADLARVRVGAKPAGEADPYRDRGSADEPSDAGGLVIRTSDGLEA 164
>gi|118617683|ref|YP_906015.1| ribosome-binding factor A [Mycobacterium ulcerans Agy99]
gi|166219379|sp|A0PQC5.1|RBFA_MYCUA RecName: Full=Ribosome-binding factor A
gi|118569793|gb|ABL04544.1| ribosome-binding factor a RbfA [Mycobacterium ulcerans Agy99]
Length=175
Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/164 (86%), Positives = 144/164 (88%), Gaps = 0/164 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI IVASAIEYEIKDPGL GVTITDAKVTADLHDATVYYTVMG TL
Sbjct 1 MADPARARRLAKRITTIVASAIEYEIKDPGLVGVTITDAKVTADLHDATVYYTVMGPTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A AAAALERAKGVLRTKVGAGTGVRFTPTLTFT D SD+VHRMDELLARARAAD
Sbjct 61 GEPDYAAAAAALERAKGVLRTKVGAGTGVRFTPTLTFTRDVTSDTVHRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEA 164
ADLARVRVGAKPAGEADPYRD GSV + GGL IRTSDG EA
Sbjct 121 ADLARVRVGAKPAGEADPYRDRGSVDEPSDAGGLVIRTSDGLEA 164
>gi|120403306|ref|YP_953135.1| ribosome-binding factor A [Mycobacterium vanbaalenii PYR-1]
gi|166219380|sp|A1T7H9.1|RBFA_MYCVP RecName: Full=Ribosome-binding factor A
gi|119956124|gb|ABM13129.1| ribosome-binding factor A [Mycobacterium vanbaalenii PYR-1]
Length=163
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/144 (76%), Positives = 123/144 (86%), Gaps = 0/144 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA+RLAKRI+ IVASAIEYEIKDP LAGVTITDAKVT DLHDAT+YYTV+GR+L
Sbjct 1 MADPARAKRLAKRISTIVASAIEYEIKDPRLAGVTITDAKVTNDLHDATLYYTVLGRSLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ GAAA LE+AKGVLRTKVGA GVRFTPTL F DT+ D+ HRM+ LLA+ARAAD
Sbjct 61 EEPDYEGAAAGLEKAKGVLRTKVGASLGVRFTPTLAFARDTVPDTAHRMEALLAKARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGS 144
DLARVR GA+ AGEADPYR G+
Sbjct 121 EDLARVRQGARHAGEADPYRVTGA 144
>gi|118472364|ref|YP_886966.1| ribosome-binding factor A [Mycobacterium smegmatis str. MC2 155]
gi|166218451|sp|A0QVM8.1|RBFA_MYCS2 RecName: Full=Ribosome-binding factor A
gi|118173651|gb|ABK74547.1| ribosome-binding factor A [Mycobacterium smegmatis str. MC2 155]
Length=156
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/144 (77%), Positives = 125/144 (87%), Gaps = 0/144 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA+RLAKRI+ IVASAIEYEIKDP LAGVTITDAKV+ DLHDAT+YYTV+G +L
Sbjct 1 MADPARAKRLAKRISTIVASAIEYEIKDPRLAGVTITDAKVSGDLHDATLYYTVLGASLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
++P+ GAAAALE+AKGVLRTKVGAGTGVRFTPTL F DT+ D+ HRM+ELLARARAAD
Sbjct 61 EDPDYEGAAAALEKAKGVLRTKVGAGTGVRFTPTLAFVRDTVPDAAHRMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGS 144
DLARVR GAK AG+ DPYR G+
Sbjct 121 EDLARVREGAKHAGDPDPYRVGGA 144
>gi|240171287|ref|ZP_04749946.1| ribosome-binding factor A [Mycobacterium kansasii ATCC 12478]
Length=165
Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/183 (77%), Positives = 148/183 (81%), Gaps = 18/183 (9%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI IVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMG TL
Sbjct 1 MADPARARRLAKRITTIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGPTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ A AAAAL+RAKGVLRTKVGAGTGVRFTPTLTFT DT SD+VHRM+ELLARARAAD
Sbjct 61 DEPDYAAAAAALDRAKGVLRTKVGAGTGVRFTPTLTFTRDTTSDTVHRMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPEAVEAPLTCGGDTGDDDR 180
ADLARVR GAKPAG+ADPYRD G A G L R +EA GDTGD DR
Sbjct 121 ADLARVRQGAKPAGDADPYRDGG------ASGELSDR-------IEA-----GDTGDHDR 162
Query 181 PKE 183
++
Sbjct 163 SRD 165
>gi|145224618|ref|YP_001135296.1| ribosome-binding factor A [Mycobacterium gilvum PYR-GCK]
gi|315444950|ref|YP_004077829.1| ribosome-binding factor A [Mycobacterium sp. Spyr1]
gi|189039548|sp|A4TCF7.1|RBFA_MYCGI RecName: Full=Ribosome-binding factor A
gi|145217104|gb|ABP46508.1| ribosome-binding factor A [Mycobacterium gilvum PYR-GCK]
gi|315263253|gb|ADT99994.1| ribosome-binding factor A [Mycobacterium sp. Spyr1]
Length=168
Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/154 (73%), Positives = 126/154 (82%), Gaps = 1/154 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA+RLAKRI+ IVASAIEYEIKDP LAGVTITDAKVT DLHDAT+YYTV+GR+L
Sbjct 1 MPDPARAKRLAKRISTIVASAIEYEIKDPRLAGVTITDAKVTNDLHDATLYYTVLGRSLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ GAAA LE+AKGVLRTKVGA GVRFTPTL F DT+ D+ HRM+ LLA+ARAAD
Sbjct 61 EEPDYEGAAAGLEKAKGVLRTKVGASLGVRFTPTLAFARDTVPDAAHRMEALLAQARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGS-VAQSPAPGG 153
DLARVR GAK AG++DPYR G + PA GG
Sbjct 121 EDLARVREGAKHAGDSDPYRVLGEGDLEGPATGG 154
>gi|15827817|ref|NP_302080.1| ribosome-binding factor A [Mycobacterium leprae TN]
gi|221230294|ref|YP_002503710.1| ribosome-binding factor A [Mycobacterium leprae Br4923]
gi|6225917|sp|Q9Z5I8.1|RBFA_MYCLE RecName: Full=Ribosome-binding factor A
gi|254789758|sp|B8ZRT3.1|RBFA_MYCLB RecName: Full=Ribosome-binding factor A
gi|4455679|emb|CAB36571.1| putative ribosome-binding factor A [Mycobacterium leprae]
gi|13093369|emb|CAC30506.1| probable ribosome-binding factor [Mycobacterium leprae]
gi|219933401|emb|CAR71650.1| probable ribosome-binding factor [Mycobacterium leprae Br4923]
Length=164
Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/146 (81%), Positives = 126/146 (87%), Gaps = 0/146 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI IVASAIE+EIKDPGL GVTI D KVTADLHDATV+YTVMGRTL
Sbjct 1 MADQARARRLAKRICTIVASAIEFEIKDPGLDGVTIVDVKVTADLHDATVFYTVMGRTLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
D P+ A AAL RAKG LR+KVGAGTGVRFTPTLTF DT SDSV RM+ELLARARAAD
Sbjct 61 DAPDYTAATAALNRAKGTLRSKVGAGTGVRFTPTLTFIRDTTSDSVARMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVA 146
AD+A+VR+ AKPAGEADPYRD GSVA
Sbjct 121 ADVAQVRLRAKPAGEADPYRDKGSVA 146
>gi|254823209|ref|ZP_05228210.1| ribosome-binding factor A [Mycobacterium intracellulare ATCC
13950]
Length=162
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/155 (82%), Positives = 133/155 (86%), Gaps = 0/155 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI IVASAIE+EIKDPGL GVTI DAKVTADLHDATV+YTVMGRTL
Sbjct 1 MADPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDAKVTADLHDATVFYTVMGRTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AAAALERAKG LRT VGAGTGVRFTPTLTFT DT SD+V RMDELLARARAAD
Sbjct 61 DEPDYGAAAAALERAKGALRTMVGAGTGVRFTPTLTFTRDTTSDNVQRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLG 155
ADLARVR GAKPAGEADPYRD+GS + G +G
Sbjct 121 ADLARVRSGAKPAGEADPYRDSGSGVEPGLDGSIG 155
>gi|108799050|ref|YP_639247.1| ribosome-binding factor A [Mycobacterium sp. MCS]
gi|119868165|ref|YP_938117.1| ribosome-binding factor A [Mycobacterium sp. KMS]
gi|126434653|ref|YP_001070344.1| ribosome-binding factor A [Mycobacterium sp. JLS]
6 more sequence titles
Length=171
Score = 200 bits (509), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 114/143 (80%), Positives = 128/143 (90%), Gaps = 0/143 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA+RLAKRI+ IVASAIEYEIKDP LAGVTITD+KVT DLHDAT+YYTV+GR+L
Sbjct 1 MADPARAKRLAKRISTIVASAIEYEIKDPRLAGVTITDSKVTNDLHDATLYYTVLGRSLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ AGAAAALE+AKGVLRTKVGAGTGVRFTPTL F DT+ D+ HRM+ELLARARAAD
Sbjct 61 EEPDYAGAAAALEKAKGVLRTKVGAGTGVRFTPTLAFVRDTVPDTAHRMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNG 143
DLARVR GAK AG+ADPYR +G
Sbjct 121 EDLARVREGAKHAGDADPYRVSG 143
>gi|41409004|ref|NP_961840.1| ribosome-binding factor A [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464538|ref|YP_882869.1| ribosome-binding factor A [Mycobacterium avium 104]
gi|254776127|ref|ZP_05217643.1| ribosome-binding factor A [Mycobacterium avium subsp. avium ATCC
25291]
gi|61215112|sp|Q73VV5.1|RBFA_MYCPA RecName: Full=Ribosome-binding factor A
gi|166218449|sp|A0QIY1.1|RBFA_MYCA1 RecName: Full=Ribosome-binding factor A
gi|41397363|gb|AAS05223.1| RbfA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165825|gb|ABK66722.1| ribosome-binding factor A [Mycobacterium avium 104]
gi|336458997|gb|EGO37949.1| ribosome-binding factor A [Mycobacterium avium subsp. paratuberculosis
S397]
Length=162
Score = 198 bits (504), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/163 (78%), Positives = 134/163 (83%), Gaps = 2/163 (1%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARARRLAKRI IVASAIE+EIKDPGL GVTI D KVTADLHDATV+YTVMGRTL
Sbjct 1 MPDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AAAALERAKG LRT VGAGTGVRFTPTLTFT DT SDSV RMDELLARARAAD
Sbjct 61 DEPDYGAAAAALERAKGALRTMVGAGTGVRFTPTLTFTRDTTSDSVARMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPAPGGLGIRTSDGPE 163
ADLARVR GAKPAGEADPYR++GS + G +G D PE
Sbjct 121 ADLARVRSGAKPAGEADPYRESGSGVEPGRDGSIG--DDDQPE 161
>gi|226366094|ref|YP_002783877.1| ribosome-binding factor A [Rhodococcus opacus B4]
gi|254789760|sp|C1B315.1|RBFA_RHOOB RecName: Full=Ribosome-binding factor A
gi|226244584|dbj|BAH54932.1| ribosome-binding factor A [Rhodococcus opacus B4]
Length=162
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/141 (71%), Positives = 115/141 (82%), Gaps = 0/141 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARAR+LAKRI IVA+AI++EIKDP LA VTITD KVTADLHDATVYYTVMG L
Sbjct 1 MVDPARARKLAKRIGTIVATAIDHEIKDPRLAFVTITDTKVTADLHDATVYYTVMGADLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AAA LE+AKGVLR+KVGAGTGVRFTPTLTF DT+ D+ M+ELLARARAAD
Sbjct 61 SEPDLVSAAAGLEKAKGVLRSKVGAGTGVRFTPTLTFVADTVPDTARHMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRD 141
++ARV GA PAG+ DPY++
Sbjct 121 DEVARVAAGASPAGDPDPYKE 141
>gi|169630212|ref|YP_001703861.1| ribosome-binding factor A (RbfA) [Mycobacterium abscessus ATCC
19977]
gi|238688905|sp|B1MD86.1|RBFA_MYCA9 RecName: Full=Ribosome-binding factor A
gi|169242179|emb|CAM63207.1| Ribosome-binding factor A (RbfA) [Mycobacterium abscessus]
Length=158
Score = 191 bits (484), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/150 (76%), Positives = 126/150 (84%), Gaps = 2/150 (1%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI AIVASAIEYEIKDP L VT+TD +VT DLHDATVYYTVMG+TL
Sbjct 1 MADPARARRLAKRIGAIVASAIEYEIKDPRLTMVTVTDTRVTNDLHDATVYYTVMGQTLS 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AGAAAAL++AKGVLRTKVGAGTGVRFTPTLTF LDT++DS M+ELL R RAAD
Sbjct 61 DEPDFAGAAAALDKAKGVLRTKVGAGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPA 150
A LA VR GA AG+ADPY++ S A+ PA
Sbjct 121 AALAEVRQGAVHAGDADPYKE--SAAEEPA 148
>gi|296171630|ref|ZP_06852844.1| ribosome-binding factor A [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295893991|gb|EFG73754.1| ribosome-binding factor A [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=157
Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 119/144 (83%), Positives = 126/144 (88%), Gaps = 0/144 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARARRLAKRI IVASAIE+EIKDPGL GVTI D KVTADLHDATV+YTVMGRTL
Sbjct 1 MPDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ A AAAAL+RAKG LRT VGAGTGVRFTPTLTFT DT D+V RMDELLARARAAD
Sbjct 61 DEPDYAAAAAALDRAKGALRTMVGAGTGVRFTPTLTFTRDTTLDTVQRMDELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGS 144
ADLARVR GAKPAG+ADPYR +GS
Sbjct 121 ADLARVRSGAKPAGDADPYRASGS 144
>gi|342858331|ref|ZP_08714986.1| ribosome-binding factor A [Mycobacterium colombiense CECT 3035]
gi|342134035|gb|EGT87215.1| ribosome-binding factor A [Mycobacterium colombiense CECT 3035]
Length=153
Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/146 (81%), Positives = 126/146 (87%), Gaps = 0/146 (0%)
Query 10 LAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAA 69
+AKRI IVASAIE+EIKDPGL GVTI DAKVTADLHDATV+YTVMGRTL DEP+ AA
Sbjct 1 MAKRINTIVASAIEFEIKDPGLEGVTIVDAKVTADLHDATVFYTVMGRTLDDEPDYGAAA 60
Query 70 AALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAADADLARVRVG 129
AALERAKG LRT VGAGTGVRFTPTLTFT DT SD+V RMDELLARARAADADLARVR G
Sbjct 61 AALERAKGALRTMVGAGTGVRFTPTLTFTRDTTSDNVQRMDELLARARAADADLARVRSG 120
Query 130 AKPAGEADPYRDNGSVAQSPAPGGLG 155
AKPAGEADPYR++GS A+ G +G
Sbjct 121 AKPAGEADPYRESGSGAEPGLDGSIG 146
>gi|111023605|ref|YP_706577.1| ribosome-binding factor A [Rhodococcus jostii RHA1]
gi|123339653|sp|Q0S217.1|RBFA_RHOSR RecName: Full=Ribosome-binding factor A
gi|110823135|gb|ABG98419.1| ribosome-binding factor A [Rhodococcus jostii RHA1]
Length=162
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/141 (71%), Positives = 116/141 (83%), Gaps = 0/141 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARAR+LAKRI IVA+AI++EIKDP LA VT+TD KVTADLHDATVYYTVMG L
Sbjct 1 MVDPARARKLAKRIGTIVATAIDHEIKDPRLAFVTVTDTKVTADLHDATVYYTVMGADLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A AAA LE+AKGVLR+KVGAGTGVRFTPTLTF DT+ D+ M+ELLARARAAD
Sbjct 61 SEPDLAAAAAGLEKAKGVLRSKVGAGTGVRFTPTLTFVADTVPDTARHMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRD 141
++ARV GA PAG+ DPY++
Sbjct 121 DEVARVAAGASPAGDPDPYKE 141
>gi|226306121|ref|YP_002766081.1| ribosome-binding factor A [Rhodococcus erythropolis PR4]
gi|229490912|ref|ZP_04384747.1| ribosome-binding factor A [Rhodococcus erythropolis SK121]
gi|259552062|sp|C0ZYA7.1|RBFA_RHOE4 RecName: Full=Ribosome-binding factor A
gi|226185238|dbj|BAH33342.1| ribosome-binding factor A [Rhodococcus erythropolis PR4]
gi|229322302|gb|EEN88088.1| ribosome-binding factor A [Rhodococcus erythropolis SK121]
Length=159
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/141 (68%), Positives = 114/141 (81%), Gaps = 0/141 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARAR+LAKRI IVA+AI++EIKDP LA VTITD KVT DLHDATVYYTVMG +
Sbjct 1 MVDPARARKLAKRIGTIVATAIDHEIKDPRLAFVTITDTKVTNDLHDATVYYTVMGEKVD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
P+ AAA LE+AKGVLR+KVGAGTGVRFTPTLTF DT+ D+ M+ELLARA+AAD
Sbjct 61 SAPDVEAAAAGLEKAKGVLRSKVGAGTGVRFTPTLTFVADTVPDTARHMEELLARAKAAD 120
Query 121 ADLARVRVGAKPAGEADPYRD 141
++A+ R A+PAG+ADPY++
Sbjct 121 DEVAKARENAQPAGDADPYKE 141
>gi|312139331|ref|YP_004006667.1| ribosome binding factor a rbfa [Rhodococcus equi 103S]
gi|325672790|ref|ZP_08152486.1| ribosome-binding factor A [Rhodococcus equi ATCC 33707]
gi|311888670|emb|CBH47982.1| ribosome binding factor A RbfA [Rhodococcus equi 103S]
gi|325556667|gb|EGD26333.1| ribosome-binding factor A [Rhodococcus equi ATCC 33707]
Length=154
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/141 (74%), Positives = 119/141 (85%), Gaps = 0/141 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI+ IVA+AI++EIKDP LA VTITDAKVTADLHDATVYYTVMG +
Sbjct 1 MADPARARRLAKRISTIVATAIDHEIKDPRLAFVTITDAKVTADLHDATVYYTVMGENID 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AGAAA LE+AKGVLR+KVGAGTGVRFTPTLTF DT+ D+ M+ELLARARAAD
Sbjct 61 TEPDLAGAAAGLEKAKGVLRSKVGAGTGVRFTPTLTFVADTVPDTARHMEELLARARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRD 141
+AR R A PAG+ADPY++
Sbjct 121 DAVARARENASPAGDADPYKE 141
>gi|305681303|ref|ZP_07404110.1| ribosome-binding factor A [Corynebacterium matruchotii ATCC 14266]
gi|305659508|gb|EFM49008.1| ribosome-binding factor A [Corynebacterium matruchotii ATCC 14266]
Length=145
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/140 (67%), Positives = 109/140 (78%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD+ARA RLAKRI IVASAIE EIKDPGLA +TITD +VT DLHDATV+YTV G+ +
Sbjct 1 MADSARAHRLAKRILHIVASAIEREIKDPGLAYITITDTRVTGDLHDATVFYTVRGKNIA 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AA AL RAKG LR VG VRFTPTLTF LDT+ +S RM+ELLARAR D
Sbjct 61 DEPDTEAAAQALTRAKGQLRKIVGDQLSVRFTPTLTFELDTMPESSARMEELLARARKRD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A+LA++R A PAG+A+PY+
Sbjct 121 AELAKLRETATPAGDANPYK 140
>gi|227549054|ref|ZP_03979103.1| ribosome-binding factor A [Corynebacterium lipophiloflavum DSM
44291]
gi|227078836|gb|EEI16799.1| ribosome-binding factor A [Corynebacterium lipophiloflavum DSM
44291]
Length=162
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/141 (64%), Positives = 110/141 (79%), Gaps = 0/141 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD +RA+RLAK+I IVASAIE E+KDP L VT+TDA+VT DLHDATVYYTV GR +
Sbjct 19 MADNSRAQRLAKQIQTIVASAIEREVKDPRLELVTVTDARVTGDLHDATVYYTVRGRKIS 78
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AA AL RA+G +R VG VRFTPT++F LDT+ ++ RM+ELL RARA D
Sbjct 79 DEPDYDQAAEALHRARGQIRKIVGDQLNVRFTPTVSFELDTVPEASARMEELLNRARARD 138
Query 121 ADLARVRVGAKPAGEADPYRD 141
A+LAR+R GAKPAGE +PYR+
Sbjct 139 AELARLREGAKPAGEGNPYRN 159
>gi|302528538|ref|ZP_07280880.1| ribosome-binding factor A [Streptomyces sp. AA4]
gi|302437433|gb|EFL09249.1| ribosome-binding factor A [Streptomyces sp. AA4]
Length=157
Score = 177 bits (450), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/140 (70%), Positives = 118/140 (85%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARAR+LAKRI+ IVASAIE+++KDP L VTITDA+VTADLHDATVYYTV+G +L
Sbjct 1 MADPARARKLAKRISQIVASAIEHDVKDPRLGAVTITDARVTADLHDATVYYTVLGESLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A AAAALE A+GVLRTKVG GTGVR+TPTLTF D++ D R++ELLA+AR +D
Sbjct 61 AEPDFASAAAALEAARGVLRTKVGQGTGVRYTPTLTFVADSVPDDARRIEELLAKARESD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A++AR GA+PAGEADPY+
Sbjct 121 AEVARRATGAQPAGEADPYK 140
>gi|333919294|ref|YP_004492875.1| ribosome-binding factor A [Amycolicicoccus subflavus DQS3-9A1]
gi|333481515|gb|AEF40075.1| Ribosome-binding factor A [Amycolicicoccus subflavus DQS3-9A1]
Length=160
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/142 (65%), Positives = 111/142 (79%), Gaps = 0/142 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD RARRLAKRI AIVA+AIE+E+KDP L VTITDA+VT DL DATV+YTV G L
Sbjct 1 MADPPRARRLAKRIMAIVATAIEHEVKDPRLEFVTITDARVTNDLRDATVFYTVRGPRLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ GAA ALE+ +G LRT+VGAGTGVRFTPTL F LD++ D+ M+ELLA+ARAAD
Sbjct 61 TEPDLEGAAIALEKVRGQLRTRVGAGTGVRFTPTLAFKLDSVPDAARHMEELLAKARAAD 120
Query 121 ADLARVRVGAKPAGEADPYRDN 142
++A+VR A AG+ DPYR +
Sbjct 121 EEVAKVRENATYAGDPDPYRSH 142
>gi|225021168|ref|ZP_03710360.1| hypothetical protein CORMATOL_01180 [Corynebacterium matruchotii
ATCC 33806]
gi|224946075|gb|EEG27284.1| hypothetical protein CORMATOL_01180 [Corynebacterium matruchotii
ATCC 33806]
Length=172
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/140 (66%), Positives = 109/140 (78%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
+AD+ARA RLAKRI IVASAIE EIKDPGLA +TITD +VT DLHDATV+YTV G+ +
Sbjct 28 VADSARAHRLAKRILHIVASAIEREIKDPGLAYITITDTRVTGDLHDATVFYTVRGKNIA 87
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AA AL RAKG LR VG VRFTPTLTF LDT+ +S RM+ELLARAR D
Sbjct 88 DEPDTEAAAQALTRAKGQLRKIVGDQLSVRFTPTLTFELDTMPESSARMEELLARARKRD 147
Query 121 ADLARVRVGAKPAGEADPYR 140
A+LA++R A PAG+A+PY+
Sbjct 148 AELAKLRETATPAGDANPYK 167
>gi|333991202|ref|YP_004523816.1| ribosome-binding factor a RbfA [Mycobacterium sp. JDM601]
gi|333487170|gb|AEF36562.1| ribosome-binding factor a RbfA [Mycobacterium sp. JDM601]
Length=159
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/141 (78%), Positives = 124/141 (88%), Gaps = 0/141 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRI+ IVASAIEYEIKDP LAGVTITDAKVTADLHDAT+YYTVMGR+L
Sbjct 1 MADPARARRLAKRISTIVASAIEYEIKDPRLAGVTITDAKVTADLHDATLYYTVMGRSLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
D+P+ GAAAAL+ AKGVLR+KVGAGTGVRFTPTLTF DT+ D+ HRM ELLA A+AAD
Sbjct 61 DDPDYGGAAAALDGAKGVLRSKVGAGTGVRFTPTLTFVRDTVPDAAHRMSELLAAAQAAD 120
Query 121 ADLARVRVGAKPAGEADPYRD 141
ADLAR+R G +P G+ +PYR+
Sbjct 121 ADLARIREGKQPVGDPNPYRE 141
>gi|256379829|ref|YP_003103489.1| ribosome-binding factor A [Actinosynnema mirum DSM 43827]
gi|255924132|gb|ACU39643.1| ribosome-binding factor A [Actinosynnema mirum DSM 43827]
Length=149
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/148 (68%), Positives = 118/148 (80%), Gaps = 0/148 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARAR+LAKRI+ IVASA+E+++KDP LA VTITD KVT DLHDATVYYTV+G L
Sbjct 1 MADQARARKLAKRISQIVASALEHQVKDPRLARVTITDTKVTGDLHDATVYYTVLGEKLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AGAAAALE+AKGVLR+ VG TGVRFTPTLTF DT+ D +MDELLA+AR D
Sbjct 61 SEPDLAGAAAALEKAKGVLRSMVGQQTGVRFTPTLTFVTDTVPDEARKMDELLAKARELD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQS 148
A++AR+ AKPAGEADPY+ V +S
Sbjct 121 AEVARIASDAKPAGEADPYKAAREVEES 148
>gi|262202087|ref|YP_003273295.1| ribosome-binding factor A [Gordonia bronchialis DSM 43247]
gi|262085434|gb|ACY21402.1| ribosome-binding factor A [Gordonia bronchialis DSM 43247]
Length=151
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/140 (69%), Positives = 114/140 (82%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA+RLAKRI++IVA+AI +EIKDP LA VTITDAKVT DLHDAT+YYTVMG +L
Sbjct 1 MADPARAQRLAKRISSIVATAIAHEIKDPRLAYVTITDAKVTGDLHDATLYYTVMGESLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AAA L +A GVLR+KVGAGTGVRFTPTL F LDT+ D+ +M+EL+ARARA+D
Sbjct 61 TEPDFEAAAAGLAKATGVLRSKVGAGTGVRFTPTLRFVLDTVPDAARQMEELVARARASD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+AR A+PAGE DPYR
Sbjct 121 ELVARQARDAQPAGEPDPYR 140
>gi|213964678|ref|ZP_03392878.1| ribosome-binding factor A [Corynebacterium amycolatum SK46]
gi|213952871|gb|EEB64253.1| ribosome-binding factor A [Corynebacterium amycolatum SK46]
Length=143
Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/142 (64%), Positives = 107/142 (76%), Gaps = 0/142 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRL+KRI IVASAIE EIKD L VTITD +VT DLHDATV+YTV GRTL
Sbjct 1 MADPARARRLSKRIQEIVASAIEREIKDRRLEFVTITDCRVTGDLHDATVFYTVRGRTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ AAAALE+AKG LR+ VG GTGVR+TPTL F +DT+ + ++ELL + RA D
Sbjct 61 EEPDYESAAAALEKAKGQLRSLVGRGTGVRYTPTLAFEVDTVPEISAHLEELLDKTRARD 120
Query 121 ADLARVRVGAKPAGEADPYRDN 142
A+LA AKPAG+ +PYRD
Sbjct 121 AELAEQARNAKPAGDVNPYRDE 142
>gi|300788181|ref|YP_003768472.1| ribosome-binding factor A [Amycolatopsis mediterranei U32]
gi|299797695|gb|ADJ48070.1| ribosome-binding factor A [Amycolatopsis mediterranei U32]
gi|340529766|gb|AEK44971.1| ribosome-binding factor A [Amycolatopsis mediterranei S699]
Length=158
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/140 (68%), Positives = 112/140 (80%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARAR+LAKRI+ IVASAIE+E+KD L VTITD KVT DLHDATVYYTV+G L
Sbjct 1 MADPARARKLAKRISQIVASAIEHEVKDTRLDYVTITDTKVTGDLHDATVYYTVLGEKLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
P+ AGAAAALE A+G+LRTKVG GTGVR+TPTLTF DTI + R+++LLA+AR AD
Sbjct 61 VPPDFAGAAAALESARGMLRTKVGQGTGVRYTPTLTFVADTIPEESKRIEDLLAKAREAD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A++AR GA+ AGE DPY+
Sbjct 121 AEVARRSAGAQHAGEPDPYK 140
>gi|331698433|ref|YP_004334672.1| ribosome-binding factor A [Pseudonocardia dioxanivorans CB1190]
gi|326953122|gb|AEA26819.1| Ribosome-binding factor A [Pseudonocardia dioxanivorans CB1190]
Length=149
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/140 (67%), Positives = 112/140 (80%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARARRLAKRI+ IVA A+E+E+KDP LA VTITDA+VT DL +ATVYYTV+GRT+
Sbjct 1 MVDQARARRLAKRISQIVADALEHEVKDPRLAMVTITDARVTGDLREATVYYTVLGRTVD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ AGAAAAL A GVLRT VG TG+R TP+L F D + D RM+ELLAR RA+D
Sbjct 61 EEPDTAGAAAALASATGVLRTMVGQQTGIRHTPSLAFVPDEVPDEARRMEELLARTRASD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A++AR+ GAKPAG+ADPYR
Sbjct 121 AEVARLAAGAKPAGDADPYR 140
>gi|337290994|ref|YP_004630015.1| ribosome-binding factor A [Corynebacterium ulcerans BR-AD22]
gi|334697108|gb|AEG81905.1| Ribosome-binding factor A [Corynebacterium ulcerans 809]
gi|334699300|gb|AEG84096.1| Ribosome-binding factor A [Corynebacterium ulcerans BR-AD22]
Length=145
Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/140 (62%), Positives = 104/140 (75%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA R+AKRI IVA+AIE EIKD L VT+TD +VT DLHDATVYYTV GR+L
Sbjct 1 MVDHARAARMAKRIQTIVATAIEREIKDYRLEYVTVTDTRVTGDLHDATVYYTVRGRSLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
D P+ GAA AL RA+G LR VG VRFTPTL+F LDT+ +S M++LLARA+A D
Sbjct 61 DTPDVEGAAEALHRARGQLRKIVGDQLSVRFTPTLSFELDTVPESSAHMEDLLARAKARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A+LA ++ AKPAGE +PY+
Sbjct 121 AELAELKKNAKPAGEENPYK 140
>gi|300858697|ref|YP_003783680.1| ribosome-binding factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|300686151|gb|ADK29073.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|302206407|gb|ADL10749.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis
C231]
gi|302330963|gb|ADL21157.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis
1002]
gi|308276650|gb|ADO26549.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis
I19]
gi|341825090|gb|AEK92611.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis
PAT10]
Length=145
Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/140 (62%), Positives = 105/140 (75%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA RLAKRI IVA+AIE EIKD L VT+TD +VT DLHDATVYYTV GR++
Sbjct 1 MVDHARAARLAKRIQTIVATAIEREIKDYRLEYVTVTDTRVTGDLHDATVYYTVRGRSIE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
D P+ GAA AL+RA+G LR VG VRFTPTL+F LDT+ +S M++LLARA+A D
Sbjct 61 DTPDVEGAAEALKRARGQLRKIVGDQLSVRFTPTLSFELDTVPESSAHMEDLLARAKARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A+LA ++ AKPAGE +PY+
Sbjct 121 AELAELKKNAKPAGEMNPYK 140
>gi|343927052|ref|ZP_08766540.1| ribosome-binding factor A [Gordonia alkanivorans NBRC 16433]
gi|343763110|dbj|GAA13466.1| ribosome-binding factor A [Gordonia alkanivorans NBRC 16433]
Length=149
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/140 (67%), Positives = 110/140 (79%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA+RLAKRI+ IVASAI EIKDP LA VT+TD +VT DLHDATVYYTVMG ++
Sbjct 1 MADPARAQRLAKRISTIVASAIATEIKDPRLAYVTVTDTRVTNDLHDATVYYTVMGESID 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+P+ AAA L +A GVLR+KVGAGTGVRFTPTL F LDT+ D+ +M+EL+ARARA D
Sbjct 61 ADPDYEAAAAGLAKATGVLRSKVGAGTGVRFTPTLRFMLDTVPDAARQMEELVARARAND 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+AR A PAG+ADPYR
Sbjct 121 ELVARRAAEASPAGDADPYR 140
>gi|38234057|ref|NP_939824.1| ribosome-binding factor A [Corynebacterium diphtheriae NCTC 13129]
gi|61215051|sp|Q6NGN3.1|RBFA_CORDI RecName: Full=Ribosome-binding factor A
gi|38200319|emb|CAE50004.1| Putative ribosome-binding factor A [Corynebacterium diphtheriae]
Length=147
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/145 (58%), Positives = 108/145 (75%), Gaps = 0/145 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA RLAKRI IVA+AIE E+KD L VT+TD +VT DLHDATVYYTV GRT+
Sbjct 1 MVDHARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTID 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
D+P+ AA AL+RA+G LR VG VRFTPTL+F LDT+ ++ M++LLARARA D
Sbjct 61 DQPDLKAAAEALQRARGQLRKIVGDQLSVRFTPTLSFELDTVPETSAHMEDLLARARARD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSV 145
+LA ++ A+PAG+A PY+D+ ++
Sbjct 121 LELAELKKNAQPAGDAHPYKDDDAM 145
>gi|296139431|ref|YP_003646674.1| ribosome-binding factor A [Tsukamurella paurometabola DSM 20162]
gi|296027565|gb|ADG78335.1| ribosome-binding factor A [Tsukamurella paurometabola DSM 20162]
Length=157
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/150 (63%), Positives = 113/150 (76%), Gaps = 0/150 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA +LAKRIA IVA+AIE++IKDP L VT+TDA+VT DLHDATVYYTVMG TL
Sbjct 1 MADPARAAKLAKRIATIVATAIEHDIKDPRLDFVTVTDARVTNDLHDATVYYTVMGPTLD 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AAA LE+A+G LR+KVGAGTGVRFTPTL F DT+ ++V M+ LLA+AR D
Sbjct 61 VEPDYESAAAGLEKARGQLRSKVGAGTGVRFTPTLRFEPDTVPEAVATMEALLAKAREQD 120
Query 121 ADLARVRVGAKPAGEADPYRDNGSVAQSPA 150
+A AKPAGEADPY+ A +P+
Sbjct 121 ERVAAAAANAKPAGEADPYKHEDEDAAAPS 150
>gi|300780966|ref|ZP_07090820.1| ribosome-binding factor A [Corynebacterium genitalium ATCC 33030]
gi|300532673|gb|EFK53734.1| ribosome-binding factor A [Corynebacterium genitalium ATCC 33030]
Length=149
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/140 (63%), Positives = 103/140 (74%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
+AD RA+RLAKRI IVASAIE +IKD L VT+TD +VT DLHDATVYYTV G +
Sbjct 4 VADNTRAQRLAKRIQTIVASAIERQIKDRRLELVTVTDVRVTGDLHDATVYYTVRGEGID 63
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ AA AL R KG LR VG GVRFTPTLTF LDT+ ++ RM+ELLARARA D
Sbjct 64 DEPDYDAAAEALTRHKGQLRKIVGEELGVRFTPTLTFELDTVPEASARMEELLARARARD 123
Query 121 ADLARVRVGAKPAGEADPYR 140
+LA ++ A+PAG ADPY+
Sbjct 124 EELAELKKNAQPAGAADPYK 143
>gi|336325787|ref|YP_004605753.1| ribosome-binding factor A [Corynebacterium resistens DSM 45100]
gi|336101769|gb|AEI09589.1| Ribosome-binding factor A [Corynebacterium resistens DSM 45100]
Length=150
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/140 (59%), Positives = 104/140 (75%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA R+AKRI IVA+AIE EIKDP L VT+TDA++T DLHDATV+YTV G+ L
Sbjct 1 MVDHARAARMAKRIQQIVATAIEREIKDPRLEFVTVTDARMTGDLHDATVFYTVRGKNLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
DEP+ A A AL +A+G LR VG GVRFTPTL+F +DT+ ++ ++E+LA+ARA D
Sbjct 61 DEPDWASAERALTKARGQLRKIVGDQLGVRFTPTLSFEVDTVPEASAHLEEVLAKARAQD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+ + GAKPAGEA+PYR
Sbjct 121 EAIRKASEGAKPAGEANPYR 140
>gi|227503411|ref|ZP_03933460.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49725]
gi|306836346|ref|ZP_07469325.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49726]
gi|227075914|gb|EEI13877.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49725]
gi|304567781|gb|EFM43367.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49726]
Length=147
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/140 (61%), Positives = 103/140 (74%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA RLAKRI IVASAIE +IKD L VT+TDA+VT DLHDATV+YTV G +
Sbjct 1 MVDHARAARLAKRIQEIVASAIELQIKDRRLEMVTVTDARVTGDLHDATVFYTVRGHDIE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A AL+RAKG LR VG VRFTPTLTF LDT+ ++ M+ELLARARA D
Sbjct 61 AEPDYDQAEEALKRAKGQLRKIVGDQLSVRFTPTLTFELDTVPEASAHMEELLARARARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+LA+++ A+PAGEA+PY+
Sbjct 121 EELAKLKENAQPAGEANPYK 140
>gi|325003070|ref|ZP_08124182.1| ribosome-binding factor A [Pseudonocardia sp. P1]
Length=148
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/140 (63%), Positives = 110/140 (79%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARAR+LAKRI+ IVA A+E+E+KDP L+ VTITD +VT DL +ATVYYTVMG +L
Sbjct 1 MVDQARARKLAKRISQIVAEALEHEVKDPRLSMVTITDTRVTGDLREATVYYTVMGASLE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+ P+ AGAAAAL+ A GVLR++VG TGVR TP+L F LD + D RM+ELLA+ RA+D
Sbjct 61 EAPDTAGAAAALQSAAGVLRSRVGQQTGVRHTPSLAFVLDQVPDEARRMEELLAQTRASD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A++AR+ A PAGEADPY+
Sbjct 121 AEVARLAASASPAGEADPYK 140
>gi|227833353|ref|YP_002835060.1| Ribosome-binding factor A [Corynebacterium aurimucosum ATCC 700975]
gi|262184339|ref|ZP_06043760.1| ribosome-binding factor A [Corynebacterium aurimucosum ATCC 700975]
gi|254789744|sp|C3PH18.1|RBFA_CORA7 RecName: Full=Ribosome-binding factor A
gi|227454369|gb|ACP33122.1| Ribosome-binding factor A [Corynebacterium aurimucosum ATCC 700975]
Length=147
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/140 (62%), Positives = 105/140 (75%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA R+AKRI IVASAIE +IKD L VTITDA+VT DLHDATV+YTV G +
Sbjct 1 MVDHARAARMAKRIQTIVASAIERQIKDRRLELVTITDARVTGDLHDATVFYTVRGTDIG 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AA AL RAKG LR VG VRFTPTL+F LDT+ ++ M+ELLARARA D
Sbjct 61 TEPDYDQAAEALTRAKGQLRKIVGDELSVRFTPTLSFELDTVPEASAHMEELLARARARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
A+LA+++ GA+PAG+A+PY+
Sbjct 121 AELAKLKEGAQPAGDANPYK 140
>gi|311739676|ref|ZP_07713511.1| ribosome-binding factor A [Corynebacterium pseudogenitalium ATCC
33035]
gi|311305492|gb|EFQ81560.1| ribosome-binding factor A [Corynebacterium pseudogenitalium ATCC
33035]
Length=147
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 104/140 (75%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA R+AKRI IVASAIE EIKD L VTITD +VT DLHDATV+YTV G+ +
Sbjct 1 MVDHARAARMAKRIKEIVASAIEREIKDRRLELVTITDTRVTGDLHDATVFYTVRGKDID 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A A AL+RAKG LR VG VRFTPTLTF +DT+ ++ M+ELLARARA D
Sbjct 61 SEPDFAQAEEALKRAKGQLRKIVGDQLSVRFTPTLTFEVDTVPEASAHMEELLARARARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+LA+++ A+PAG+A+PY+
Sbjct 121 EELAKLKEIAQPAGDANPYK 140
>gi|255325204|ref|ZP_05366310.1| ribosome-binding factor A [Corynebacterium tuberculostearicum
SK141]
gi|255297769|gb|EET77080.1| ribosome-binding factor A [Corynebacterium tuberculostearicum
SK141]
Length=147
Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/140 (60%), Positives = 103/140 (74%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
M D ARA R+AKRI IVASAIE EIKD L VTITD +VT DLHDATV+YTV G+ +
Sbjct 1 MVDHARAARMAKRIKEIVASAIEREIKDRRLELVTITDTRVTGDLHDATVFYTVRGKDID 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A A AL+RAKG LR VG VRFTPTLTF +DT+ ++ M+ELLARARA D
Sbjct 61 SEPDFAQAEEALKRAKGQLRKIVGDQLSVRFTPTLTFEVDTVPEASAHMEELLARARARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+L +++ A+PAG+A+PY+
Sbjct 121 EELGKLKENAQPAGDANPYK 140
>gi|326382942|ref|ZP_08204632.1| ribosome-binding factor A [Gordonia neofelifaecis NRRL B-59395]
gi|326198532|gb|EGD55716.1| ribosome-binding factor A [Gordonia neofelifaecis NRRL B-59395]
Length=154
Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 95/140 (68%), Positives = 106/140 (76%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA RLAKRI IVASAI EIKDP LA VTITD +VT DLHDATV+YTVMG ++
Sbjct 1 MADPARAARLAKRITTIVASAIGGEIKDPRLAHVTITDCRVTGDLHDATVFYTVMGDSVE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ A AAA L A G LR+KVGAGTGVRFTPTL F LDT+ D+ MDELLARARA D
Sbjct 61 SEPDVAEAAAGLAAATGALRSKVGAGTGVRFTPTLRFELDTVPDATRAMDELLARARAQD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+AR A+PAG+ DPYR
Sbjct 121 ESVARAARDAQPAGDVDPYR 140
>gi|134102371|ref|YP_001108032.1| ribosome-binding factor A [Saccharopolyspora erythraea NRRL 2338]
gi|291009315|ref|ZP_06567288.1| ribosome-binding factor A [Saccharopolyspora erythraea NRRL 2338]
gi|166219402|sp|A4FM32.1|RBFA_SACEN RecName: Full=Ribosome-binding factor A
gi|133914994|emb|CAM05107.1| ribosome-binding factor A [Saccharopolyspora erythraea NRRL 2338]
Length=166
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/140 (67%), Positives = 108/140 (78%), Gaps = 4/140 (2%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARARRLAKRIA IVAS +EYE+KDP LA VTITDA+VT DL DATVYYTV G
Sbjct 1 MADTARARRLAKRIAQIVASGLEYEVKDPRLAMVTITDARVTPDLRDATVYYTVFG---- 56
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
D+ + A AAAL A GVLR++VG TGVRFTPTLTF DT+ D R+DELLA+AR AD
Sbjct 57 DDADHASTAAALASATGVLRSRVGQQTGVRFTPTLTFVADTVPDDARRLDELLAQAREAD 116
Query 121 ADLARVRVGAKPAGEADPYR 140
A++AR+ A+ AG+ADPYR
Sbjct 117 AEVARLASTAEHAGDADPYR 136
>gi|19553188|ref|NP_601190.1| ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
gi|62390824|ref|YP_226226.1| ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
gi|24418640|sp|Q8NP41.1|RBFA_CORGL RecName: Full=Ribosome-binding factor A
gi|21324754|dbj|BAB99377.1| Ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
gi|41326162|emb|CAF20325.1| Ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
Length=149
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 102/140 (73%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA R+AKRI IVASAIE +IKD L VTITD +T DLHDA V+YTV G ++
Sbjct 1 MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ AA AL RA+G LR VG GVRFTPTLT+++DT+ ++ M+ LL RAR D
Sbjct 61 EEPDLEAAAEALHRARGQLRKIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+LA++R GA PAG+ADPY+
Sbjct 121 EELAKLREGAAPAGDADPYK 140
>gi|227488655|ref|ZP_03918971.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51867]
gi|227543259|ref|ZP_03973308.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091549|gb|EEI26861.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181068|gb|EEI62040.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51866]
Length=160
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/140 (57%), Positives = 101/140 (73%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD RA R+AKRI IVA+A+E+EIKD L +T+TD +T DLHDATVYYTV G+TL
Sbjct 21 MADKVRAGRMAKRIQTIVATALEHEIKDWHLEYITVTDCSLTGDLHDATVYYTVRGKTLD 80
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ A AA +L R KG LR VG VRFTPTL+F LDT+ +S M++LLARARA D
Sbjct 81 EEPDYAAAAESLNRWKGRLRKIVGDQLSVRFTPTLSFELDTVPESRAHMEDLLARARARD 140
Query 121 ADLARVRVGAKPAGEADPYR 140
++ ++ G PAGE +PY+
Sbjct 141 EEVRKLAEGKTPAGEENPYK 160
>gi|296117677|ref|ZP_06836261.1| ribosome-binding factor A [Corynebacterium ammoniagenes DSM 20306]
gi|295969408|gb|EFG82649.1| ribosome-binding factor A [Corynebacterium ammoniagenes DSM 20306]
Length=144
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/140 (60%), Positives = 101/140 (73%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA R+AKRI IVA+AI+ EIKD L VTITD +VT DLHDATV+YTV G +
Sbjct 1 MADHARAARMAKRIQTIVATAIDREIKDRRLELVTITDTRVTGDLHDATVFYTVRGVDID 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
EP+ AA AL RAKG LR VG VRFTPTL+F D + ++ M+ELLARARA D
Sbjct 61 SEPDYDQAAEALNRAKGQLRKIVGDQLQVRFTPTLSFEFDAVPEASAHMEELLARARARD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+LA+++ AKPAGEA+PY+
Sbjct 121 EELAKLKENAKPAGEANPYK 140
>gi|145295888|ref|YP_001138709.1| ribosome-binding factor A [Corynebacterium glutamicum R]
gi|166218435|sp|A4QEZ1.1|RBFA_CORGB RecName: Full=Ribosome-binding factor A
gi|140845808|dbj|BAF54807.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044119|gb|EGV39800.1| ribosome-binding factor A [Corynebacterium glutamicum S9114]
Length=149
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/140 (58%), Positives = 102/140 (73%), Gaps = 0/140 (0%)
Query 1 MADAARARRLAKRIAAIVASAIEYEIKDPGLAGVTITDAKVTADLHDATVYYTVMGRTLH 60
MAD ARA R+AKRI IVASAIE +IKD L VTITD +T DLHDA V+YTV G ++
Sbjct 1 MADNARAARMAKRIQTIVASAIERDIKDRRLEFVTITDVTMTGDLHDAKVFYTVRGASIE 60
Query 61 DEPNCAGAAAALERAKGVLRTKVGAGTGVRFTPTLTFTLDTISDSVHRMDELLARARAAD 120
+EP+ AA AL RA+G LR VG GVRFTPTLT+++DT+ ++ M+ LL RAR D
Sbjct 61 EEPDLEAAAEALHRARGQLRKIVGQQLGVRFTPTLTYSIDTVPEASAHMEALLDRARKRD 120
Query 121 ADLARVRVGAKPAGEADPYR 140
+LA++R GA PAG+ADPY+
Sbjct 121 EELAKLREGAVPAGDADPYK 140
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 167689013960
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40