BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2840c
Length=99
Score E
Sequences producing significant alignments: (Bits) Value
gi|254232935|ref|ZP_04926262.1| conserved hypothetical protein [... 199 1e-49
gi|345462015|ref|NP_217356.2| hypothetical protein Rv2840c [Myco... 199 2e-49
gi|15842381|ref|NP_337418.1| hypothetical protein MT2906 [Mycoba... 197 3e-49
gi|254551904|ref|ZP_05142351.1| hypothetical protein Mtube_15832... 176 1e-42
gi|340627833|ref|YP_004746285.1| hypothetical protein MCAN_28621... 166 8e-40
gi|289575541|ref|ZP_06455768.1| conserved hypothetical protein [... 166 9e-40
gi|15827819|ref|NP_302082.1| hypothetical protein ML1557 [Mycoba... 157 7e-37
gi|183981906|ref|YP_001850197.1| hypothetical protein MMAR_1893 ... 152 2e-35
gi|41409006|ref|NP_961842.1| hypothetical protein MAP2908c [Myco... 144 4e-33
gi|342858328|ref|ZP_08714983.1| hypothetical protein MCOL_05621 ... 143 9e-33
gi|240172760|ref|ZP_04751419.1| hypothetical protein MkanA1_2582... 132 2e-29
gi|118617681|ref|YP_906013.1| hypothetical protein MUL_2121 [Myc... 132 2e-29
gi|254821853|ref|ZP_05226854.1| hypothetical protein MintA_18107... 123 7e-27
gi|126434651|ref|YP_001070342.1| hypothetical protein Mjls_2064 ... 123 8e-27
gi|108799048|ref|YP_639245.1| hypothetical protein Mmcs_2081 [My... 123 8e-27
gi|145224620|ref|YP_001135298.1| hypothetical protein Mflv_4040 ... 113 9e-24
gi|118463354|ref|YP_882871.1| hypothetical protein MAV_3694 [Myc... 112 2e-23
gi|118470438|ref|YP_886963.1| hypothetical protein MSMEG_2626 [M... 107 7e-22
gi|120403304|ref|YP_953133.1| hypothetical protein Mvan_2313 [My... 106 1e-21
gi|54026038|ref|YP_120280.1| hypothetical protein nfa40675 [Noca... 97.4 6e-19
gi|111023602|ref|YP_706574.1| hypothetical protein RHA1_ro06643 ... 91.7 4e-17
gi|315502524|ref|YP_004081411.1| hypothetical protein ML5_1728 [... 91.3 5e-17
gi|226366091|ref|YP_002783874.1| hypothetical protein ROP_66820 ... 91.3 5e-17
gi|330466361|ref|YP_004404104.1| hypothetical protein VAB18032_1... 90.9 5e-17
gi|291004242|ref|ZP_06562215.1| hypothetical protein SeryN2_0696... 89.7 1e-16
gi|258652415|ref|YP_003201571.1| hypothetical protein Namu_2205 ... 87.4 6e-16
gi|226306118|ref|YP_002766078.1| hypothetical protein RER_26310 ... 86.7 1e-15
gi|229491426|ref|ZP_04385250.1| conserved hypothetical protein [... 86.3 1e-15
gi|119960833|ref|YP_947327.1| hypothetical protein AAur_1560 [Ar... 85.1 3e-15
gi|119717415|ref|YP_924380.1| hypothetical protein Noca_3191 [No... 84.7 4e-15
gi|159036965|ref|YP_001536218.1| hypothetical protein Sare_1326 ... 84.7 4e-15
gi|145593917|ref|YP_001158214.1| hypothetical protein Strop_1369... 83.6 9e-15
gi|296129356|ref|YP_003636606.1| hypothetical protein Cfla_1509 ... 83.6 1e-14
gi|291436936|ref|ZP_06576326.1| conserved hypothetical protein [... 82.4 2e-14
gi|88855367|ref|ZP_01130031.1| hypothetical protein A20C1_01051 ... 82.0 3e-14
gi|117928723|ref|YP_873274.1| hypothetical protein Acel_1516 [Ac... 81.6 4e-14
gi|50954462|ref|YP_061750.1| hypothetical protein Lxx07140 [Leif... 81.3 5e-14
gi|325962806|ref|YP_004240712.1| nucleic-acid-binding protein im... 80.5 9e-14
gi|297202733|ref|ZP_06920130.1| conserved hypothetical protein [... 79.7 1e-13
gi|302558071|ref|ZP_07310413.1| conserved hypothetical protein [... 79.7 1e-13
gi|302554523|ref|ZP_07306865.1| conserved hypothetical protein [... 79.7 1e-13
gi|84498576|ref|ZP_00997339.1| hypothetical protein JNB_20328 [J... 78.6 3e-13
gi|21224054|ref|NP_629833.1| hypothetical protein SCO5705 [Strep... 78.2 4e-13
gi|334336729|ref|YP_004541881.1| protein of unknown function DUF... 77.8 4e-13
gi|295836230|ref|ZP_06823163.1| ribosomal protein L7Ae family pr... 77.8 5e-13
gi|302528541|ref|ZP_07280883.1| conserved hypothetical protein [... 77.4 6e-13
gi|238063381|ref|ZP_04608090.1| hypothetical protein MCAG_04347 ... 77.0 9e-13
gi|302522225|ref|ZP_07274567.1| conserved hypothetical protein [... 76.6 1e-12
gi|302537261|ref|ZP_07289603.1| conserved hypothetical protein [... 76.3 1e-12
gi|254382097|ref|ZP_04997459.1| conserved hypothetical protein [... 76.3 2e-12
>gi|254232935|ref|ZP_04926262.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|124601994|gb|EAY61004.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length=125
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR
Sbjct 27 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 86
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT
Sbjct 87 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 125
>gi|345462015|ref|NP_217356.2| hypothetical protein Rv2840c [Mycobacterium tuberculosis H37Rv]
Length=119
Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR
Sbjct 21 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 80
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT
Sbjct 81 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 119
>gi|15842381|ref|NP_337418.1| hypothetical protein MT2906 [Mycobacterium tuberculosis CDC1551]
gi|31794017|ref|NP_856510.1| hypothetical protein Mb2865c [Mycobacterium bovis AF2122/97]
gi|121638720|ref|YP_978944.1| hypothetical protein BCG_2860c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
63 more sequence titles
Length=99
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/99 (99%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
+RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR
Sbjct 1 MRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT
Sbjct 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
>gi|254551904|ref|ZP_05142351.1| hypothetical protein Mtube_15832 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|308405989|ref|ZP_07494657.2| hypothetical protein TMLG_01326 [Mycobacterium tuberculosis SUMu012]
gi|308364912|gb|EFP53763.1| hypothetical protein TMLG_01326 [Mycobacterium tuberculosis SUMu012]
gi|323718539|gb|EGB27709.1| hypothetical protein TMMG_03711 [Mycobacterium tuberculosis CDC1551A]
Length=88
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)
Query 12 LAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRAFARALRIAGS 71
+AVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRAFARALRIAGS
Sbjct 1 MAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRAFARALRIAGS 60
Query 72 PDTSAVVEYLESLGELEPPGNRTGSNRT 99
PDTSAVVEYLESLGELEPPGNRTGSNRT
Sbjct 61 PDTSAVVEYLESLGELEPPGNRTGSNRT 88
>gi|340627833|ref|YP_004746285.1| hypothetical protein MCAN_28621 [Mycobacterium canettii CIPT
140010059]
gi|340006023|emb|CCC45193.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=99
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/99 (98%), Positives = 98/99 (99%), Gaps = 0/99 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
+RTCVGCRKRGLAVELLRVVAVSTGNGNYA IVDTATSLPGRGAWLHPLRQCAQQAIRRR
Sbjct 1 MRTCVGCRKRGLAVELLRVVAVSTGNGNYAAIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT
Sbjct 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
>gi|289575541|ref|ZP_06455768.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339632849|ref|YP_004724491.1| hypothetical protein MAF_28450 [Mycobacterium africanum GM041182]
gi|289539972|gb|EFD44550.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|339332205|emb|CCC27915.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=99
Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/99 (98%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
+RTCVGCRKRGLAVELLRVVAVSTGNGN+AVIVDTATSLPGRGAWLHPLRQCAQQAIRRR
Sbjct 1 MRTCVGCRKRGLAVELLRVVAVSTGNGNHAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT
Sbjct 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSNRT 99
>gi|15827819|ref|NP_302082.1| hypothetical protein ML1557 [Mycobacterium leprae TN]
gi|221230296|ref|YP_002503712.1| hypothetical protein MLBr_01557 [Mycobacterium leprae Br4923]
gi|4455677|emb|CAB36569.1| hypothetical protein MLCB596.13 [Mycobacterium leprae]
gi|13093371|emb|CAC30508.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933403|emb|CAR71652.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=106
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/97 (81%), Positives = 84/97 (87%), Gaps = 0/97 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
+RTCVGCRKR LAVELLRVVA STG G+YAVIVDTA+SL GRGAWLHP QC QQAIRRR
Sbjct 1 MRTCVGCRKRELAVELLRVVAPSTGKGSYAVIVDTASSLSGRGAWLHPDMQCVQQAIRRR 60
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSN 97
AF ALRIAGSPDTSAVVE++E L EL+ PGNRTGS
Sbjct 61 AFTGALRIAGSPDTSAVVEHIEFLSELDRPGNRTGSK 97
>gi|183981906|ref|YP_001850197.1| hypothetical protein MMAR_1893 [Mycobacterium marinum M]
gi|183175232|gb|ACC40342.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=126
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/97 (80%), Positives = 80/97 (83%), Gaps = 0/97 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKR LAVELLRVVA STGNGNYAVIVDTA LPGRGAWLHP+ QC QQAIRRR
Sbjct 21 VRTCVGCRKRELAVELLRVVAESTGNGNYAVIVDTARGLPGRGAWLHPVPQCVQQAIRRR 80
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSN 97
AF RALRI GSPD SAVVE++ L PP NRTGS
Sbjct 81 AFTRALRITGSPDISAVVEHIGGLDVPGPPSNRTGSK 117
>gi|41409006|ref|NP_961842.1| hypothetical protein MAP2908c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397365|gb|AAS05225.1| hypothetical protein MAP_2908c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=102
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/92 (78%), Positives = 77/92 (84%), Gaps = 0/92 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
+RTCVGCRKR LAVELLRVVAV TGNG +A IVDTA +LPGRGAWLHP QCAQQAIRRR
Sbjct 1 MRTCVGCRKRELAVELLRVVAVPTGNGEFAAIVDTAGNLPGRGAWLHPAPQCAQQAIRRR 60
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGN 92
AF +ALRI GSPDTSAVVE++ESL E P
Sbjct 61 AFTKALRITGSPDTSAVVEHIESLHAPERPAT 92
>gi|342858328|ref|ZP_08714983.1| hypothetical protein MCOL_05621 [Mycobacterium colombiense CECT
3035]
gi|342134032|gb|EGT87212.1| hypothetical protein MCOL_05621 [Mycobacterium colombiense CECT
3035]
Length=123
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 76/90 (85%), Gaps = 0/90 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKR LAVELLRVVAV GNG +AVIVDT SLPGRGAWLHP QCAQQAIRRR
Sbjct 22 VRTCVGCRKRELAVELLRVVAVPDGNGGFAVIVDTGNSLPGRGAWLHPGPQCAQQAIRRR 81
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPP 90
AF +ALRI GSPDTSAVVE++ESL E P
Sbjct 82 AFTKALRITGSPDTSAVVEHIESLCAPERP 111
>gi|240172760|ref|ZP_04751419.1| hypothetical protein MkanA1_25822 [Mycobacterium kansasii ATCC
12478]
Length=115
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/84 (79%), Positives = 70/84 (84%), Gaps = 0/84 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKR LAVELLRVVA STGNGNYAVIVD + L GRGAWLHP +C QQAIRRR
Sbjct 21 VRTCVGCRKRELAVELLRVVAESTGNGNYAVIVDPSRRLQGRGAWLHPEPRCLQQAIRRR 80
Query 61 AFARALRIAGSPDTSAVVEYLESL 84
AF RALRI GSPDTSAVVE++
Sbjct 81 AFTRALRITGSPDTSAVVEHISGF 104
>gi|118617681|ref|YP_906013.1| hypothetical protein MUL_2121 [Mycobacterium ulcerans Agy99]
gi|118569791|gb|ABL04542.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=95
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/86 (77%), Positives = 70/86 (82%), Gaps = 0/86 (0%)
Query 12 LAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRAFARALRIAGS 71
+AVELLRVVA STGNGNYAVIVDTA LPGRGAWLHP+ QC QQAIRRRAF RALRI GS
Sbjct 1 MAVELLRVVAESTGNGNYAVIVDTARGLPGRGAWLHPVPQCVQQAIRRRAFTRALRITGS 60
Query 72 PDTSAVVEYLESLGELEPPGNRTGSN 97
PD SAVVE++ L PP NRTGS
Sbjct 61 PDISAVVEHIGGLDVPGPPSNRTGSK 86
>gi|254821853|ref|ZP_05226854.1| hypothetical protein MintA_18107 [Mycobacterium intracellulare
ATCC 13950]
Length=91
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/81 (73%), Positives = 67/81 (83%), Gaps = 0/81 (0%)
Query 12 LAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRAFARALRIAGS 71
+AVELLRVVAV TGNG +AVIVDT + LPGRGAWLHP+ CAQQAIRRRAF +ALRI GS
Sbjct 1 MAVELLRVVAVPTGNGEFAVIVDTGSRLPGRGAWLHPVPHCAQQAIRRRAFTKALRITGS 60
Query 72 PDTSAVVEYLESLGELEPPGN 92
PDTSAVVE++ESL + P
Sbjct 61 PDTSAVVEHIESLSAPDRPAT 81
>gi|126434651|ref|YP_001070342.1| hypothetical protein Mjls_2064 [Mycobacterium sp. JLS]
gi|126234451|gb|ABN97851.1| protein of unknown function DUF448 [Mycobacterium sp. JLS]
Length=147
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/89 (70%), Positives = 67/89 (76%), Gaps = 0/89 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR+R LAVELLRV AV GNG A VDT +LPGRGAWLHP QC AIRRR
Sbjct 45 VRTCVGCRRRELAVELLRVAAVVDGNGECAATVDTTGNLPGRGAWLHPDAQCLHAAIRRR 104
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEP 89
AF RALRI GSPD SAV+E++ESL P
Sbjct 105 AFVRALRITGSPDLSAVIEHVESLSAGSP 133
>gi|108799048|ref|YP_639245.1| hypothetical protein Mmcs_2081 [Mycobacterium sp. MCS]
gi|119868163|ref|YP_938115.1| hypothetical protein Mkms_2127 [Mycobacterium sp. KMS]
gi|108769467|gb|ABG08189.1| protein of unknown function DUF448 [Mycobacterium sp. MCS]
gi|119694252|gb|ABL91325.1| protein of unknown function DUF448 [Mycobacterium sp. KMS]
Length=124
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/89 (70%), Positives = 67/89 (76%), Gaps = 0/89 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR+R LAVELLRV AV GNG A VDT +LPGRGAWLHP QC AIRRR
Sbjct 22 VRTCVGCRRRELAVELLRVAAVVDGNGECAATVDTTGNLPGRGAWLHPDAQCLHAAIRRR 81
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEP 89
AF RALRI GSPD SAV+E++ESL P
Sbjct 82 AFVRALRITGSPDLSAVIEHVESLSAGSP 110
>gi|145224620|ref|YP_001135298.1| hypothetical protein Mflv_4040 [Mycobacterium gilvum PYR-GCK]
gi|315444952|ref|YP_004077831.1| nucleic-acid-binding protein implicated in transcription termination
[Mycobacterium sp. Spyr1]
gi|145217106|gb|ABP46510.1| protein of unknown function DUF448 [Mycobacterium gilvum PYR-GCK]
gi|315263255|gb|ADT99996.1| predicted nucleic-acid-binding protein implicated in transcription
termination [Mycobacterium sp. Spyr1]
Length=120
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/96 (63%), Positives = 68/96 (71%), Gaps = 4/96 (4%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGN----YAVIVDTATSLPGRGAWLHPLRQCAQQA 56
VRTC+GCR+R LAVELLR+VAV + NG+ AV VD A LPGRGAWLHP C Q A
Sbjct 22 VRTCIGCRRRELAVELLRLVAVDSANGSGNRSSAVTVDAARKLPGRGAWLHPDPGCLQAA 81
Query 57 IRRRAFARALRIAGSPDTSAVVEYLESLGELEPPGN 92
IRRRAF RALRI GSPD +AV E+L + E PG
Sbjct 82 IRRRAFGRALRITGSPDITAVSEHLLPQEQPEAPGQ 117
>gi|118463354|ref|YP_882871.1| hypothetical protein MAV_3694 [Mycobacterium avium 104]
gi|118164641|gb|ABK65538.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=84
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 60/75 (80%), Gaps = 0/75 (0%)
Query 19 VVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRAFARALRIAGSPDTSAVV 78
+VAV TGNG +A IVDTA +LPGRGAWLHP QCAQQAIRRRAF +ALRI GSPDTSAVV
Sbjct 1 MVAVPTGNGEFAAIVDTAGNLPGRGAWLHPAPQCAQQAIRRRAFTKALRITGSPDTSAVV 60
Query 79 EYLESLGELEPPGNR 93
E++ESL E P
Sbjct 61 EHIESLHAPERPATE 75
>gi|118470438|ref|YP_886963.1| hypothetical protein MSMEG_2626 [Mycobacterium smegmatis str.
MC2 155]
gi|118171725|gb|ABK72621.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=116
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/88 (74%), Positives = 73/88 (83%), Gaps = 0/88 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTC+GCRKR LA +LLR VAV GNGNY+V VDT+ S+PGRGAWLHP +CA+ A+RRR
Sbjct 22 VRTCIGCRKRELAADLLRTVAVRDGNGNYSVSVDTSASMPGRGAWLHPDPKCAELAVRRR 81
Query 61 AFARALRIAGSPDTSAVVEYLESLGELE 88
AFARALRIAGSPDTS V EY ESLG E
Sbjct 82 AFARALRIAGSPDTSGVNEYFESLGTPE 109
>gi|120403304|ref|YP_953133.1| hypothetical protein Mvan_2313 [Mycobacterium vanbaalenii PYR-1]
gi|119956122|gb|ABM13127.1| protein of unknown function DUF448 [Mycobacterium vanbaalenii
PYR-1]
Length=120
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/96 (60%), Positives = 64/96 (67%), Gaps = 4/96 (4%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGN----YAVIVDTATSLPGRGAWLHPLRQCAQQA 56
VRTC+GCRKR LAVELLRVVA +GNG V VD+A LPGRGAWLHP C Q A
Sbjct 22 VRTCIGCRKRELAVELLRVVAADSGNGPGNGPSTVTVDSARRLPGRGAWLHPDPVCLQAA 81
Query 57 IRRRAFARALRIAGSPDTSAVVEYLESLGELEPPGN 92
+RRRAF RALRI GSPD +A+ E + PG
Sbjct 82 VRRRAFGRALRITGSPDITALSERFPTGDAHGTPGQ 117
>gi|54026038|ref|YP_120280.1| hypothetical protein nfa40675 [Nocardia farcinica IFM 10152]
gi|54017546|dbj|BAD58916.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=92
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/90 (57%), Positives = 64/90 (72%), Gaps = 4/90 (4%)
Query 1 VRTCVGCRKRGLAVELLRVVAVS--TGNGNYAVIV--DTATSLPGRGAWLHPLRQCAQQA 56
+RTC+GCRKR AV+LLR+VA G+G+ V+V D LPGRGAWLHPL C QA
Sbjct 1 MRTCIGCRKRESAVDLLRIVARDRDAGDGSRIVVVVPDPRRRLPGRGAWLHPLSACLSQA 60
Query 57 IRRRAFARALRIAGSPDTSAVVEYLESLGE 86
+RRRAF RALR++G D SA+ +YLE+ E
Sbjct 61 VRRRAFGRALRVSGHLDISALEQYLENRHE 90
>gi|111023602|ref|YP_706574.1| hypothetical protein RHA1_ro06643 [Rhodococcus jostii RHA1]
gi|110823132|gb|ABG98416.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=117
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/81 (56%), Positives = 54/81 (67%), Gaps = 0/81 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTC+GCR+R LAV+LLRVV +G + + D LPGRGAWLHP C A RRR
Sbjct 18 VRTCIGCRERALAVDLLRVVVSESGPQGHVLAPDPRHRLPGRGAWLHPAEACLSLAERRR 77
Query 61 AFARALRIAGSPDTSAVVEYL 81
AF RALR+ GS DTS V ++
Sbjct 78 AFGRALRVTGSVDTSEVDHWV 98
>gi|315502524|ref|YP_004081411.1| hypothetical protein ML5_1728 [Micromonospora sp. L5]
gi|315409143|gb|ADU07260.1| protein of unknown function DUF448 [Micromonospora sp. L5]
Length=104
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/82 (55%), Positives = 57/82 (70%), Gaps = 0/82 (0%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCRKR A ELLRVVA+ G+ ++ D A LPGRGA +HP C QA+RRRA
Sbjct 9 RTCVGCRKRAPASELLRVVAIGDEAGHTSLRPDPARRLPGRGANMHPDPACFAQAVRRRA 68
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G PD A+ E++++
Sbjct 69 FGRALRLTGVPDHGALAEHVDA 90
>gi|226366091|ref|YP_002783874.1| hypothetical protein ROP_66820 [Rhodococcus opacus B4]
gi|226244581|dbj|BAH54929.1| hypothetical protein [Rhodococcus opacus B4]
Length=117
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/83 (55%), Positives = 57/83 (69%), Gaps = 0/83 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTC+GCR+R LAV+LLRVV +G + + D LPGRGAWLHP+ C A RRR
Sbjct 18 VRTCIGCRERALAVDLLRVVVGESGPQGHVLAPDPRRRLPGRGAWLHPVEVCLSLAERRR 77
Query 61 AFARALRIAGSPDTSAVVEYLES 83
AF RALR++GS DTS V ++ +
Sbjct 78 AFGRALRVSGSVDTSEVDHWVRA 100
>gi|330466361|ref|YP_004404104.1| hypothetical protein VAB18032_11950 [Verrucosispora maris AB-18-032]
gi|328809332|gb|AEB43504.1| hypothetical protein VAB18032_11950 [Verrucosispora maris AB-18-032]
Length=102
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/80 (59%), Positives = 55/80 (69%), Gaps = 1/80 (1%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R A ELLR+VA+ G Y + D A LPGRGA +HP C QA+RRRA
Sbjct 9 RTCVGCRQRAPASELLRIVAIDDEAG-YGLRPDPARRLPGRGANMHPDPACFAQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYL 81
F RALR+AG PD A+ EYL
Sbjct 68 FGRALRLAGVPDDGALAEYL 87
>gi|291004242|ref|ZP_06562215.1| hypothetical protein SeryN2_06962 [Saccharopolyspora erythraea
NRRL 2338]
Length=119
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/95 (56%), Positives = 59/95 (63%), Gaps = 5/95 (5%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
+RTCVGCR R A ELLRVVA G A + D LPGRGAWLHP C +QA RRR
Sbjct 1 MRTCVGCRVRTSATELLRVVA-EGGRAGSAAVPDPRRRLPGRGAWLHPDAACLRQAERRR 59
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTG 95
AF RALR+ G D SA+ EYLE L NR+G
Sbjct 60 AFPRALRVTGPLDISALQEYLERPERL----NRSG 90
>gi|258652415|ref|YP_003201571.1| hypothetical protein Namu_2205 [Nakamurella multipartita DSM
44233]
gi|258555640|gb|ACV78582.1| protein of unknown function DUF448 [Nakamurella multipartita
DSM 44233]
Length=139
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/97 (55%), Positives = 61/97 (63%), Gaps = 6/97 (6%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR+R A +LLRVVAV + +I DT LPGRGAWLHP C A RRR
Sbjct 22 VRTCVGCRRRQRASDLLRVVAV-----DGVLIPDTRHRLPGRGAWLHPEVGCLDLAERRR 76
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEPPGNRTGSN 97
AF RALR + DTS V L+S GE P +RTG +
Sbjct 77 AFGRALRASEHLDTSKVRTLLDS-GEWRGPADRTGPD 112
>gi|226306118|ref|YP_002766078.1| hypothetical protein RER_26310 [Rhodococcus erythropolis PR4]
gi|226185235|dbj|BAH33339.1| hypothetical protein RER_26310 [Rhodococcus erythropolis PR4]
Length=105
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/84 (53%), Positives = 59/84 (71%), Gaps = 0/84 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR++G AV+LLRVV G ++ D + LPGRGAWLH C A RRR
Sbjct 7 VRTCVGCREQGSAVDLLRVVVGEQGPEGSPLVPDVSRRLPGRGAWLHLDPSCLSLAERRR 66
Query 61 AFARALRIAGSPDTSAVVEYLESL 84
AF+RALR++G+ DTSAV + ++++
Sbjct 67 AFSRALRVSGNLDTSAVDQLVDAV 90
>gi|229491426|ref|ZP_04385250.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321711|gb|EEN87508.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=130
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/84 (53%), Positives = 59/84 (71%), Gaps = 0/84 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR++G AV+LLRVV G ++ D + LPGRGAWLH C A RRR
Sbjct 32 VRTCVGCREQGSAVDLLRVVVGEQGPEGSPLVPDVSRRLPGRGAWLHLDPSCLSLAERRR 91
Query 61 AFARALRIAGSPDTSAVVEYLESL 84
AF+RALR++G+ DTSAV + ++++
Sbjct 92 AFSRALRVSGNLDTSAVDQLVDAV 115
>gi|119960833|ref|YP_947327.1| hypothetical protein AAur_1560 [Arthrobacter aurescens TC1]
gi|119947692|gb|ABM06603.1| putative protein of unknown function (DUF448) [Arthrobacter aurescens
TC1]
Length=149
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/81 (57%), Positives = 57/81 (71%), Gaps = 4/81 (4%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTC+GCRK+G EL+R+VA G+G+ AV+VD + GRGAWLHP +C AI+RR
Sbjct 48 VRTCIGCRKQGSRSELVRLVA--QGSGSSAVLVDERRRMAGRGAWLHPSEKCLALAIKRR 105
Query 61 AFARALRIAGSPDTSAVVEYL 81
AF RAL AG+ DT AV YL
Sbjct 106 AFGRAL--AGASDTGAVERYL 124
>gi|119717415|ref|YP_924380.1| hypothetical protein Noca_3191 [Nocardioides sp. JS614]
gi|119538076|gb|ABL82693.1| protein of unknown function DUF448 [Nocardioides sp. JS614]
Length=121
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/89 (50%), Positives = 55/89 (62%), Gaps = 0/89 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKR EL+RV S +G+ AV+ D A + PGRGA LHP +C A+RR+
Sbjct 20 VRTCVGCRKRAAKNELVRVTVGSDAHGHPAVVPDPAATAPGRGAHLHPTMECYDLAVRRK 79
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEP 89
AF RALR+ ++ V EYL S P
Sbjct 80 AFGRALRVTTGLSSAPVGEYLGSADGTAP 108
>gi|159036965|ref|YP_001536218.1| hypothetical protein Sare_1326 [Salinispora arenicola CNS-205]
gi|157915800|gb|ABV97227.1| protein of unknown function DUF448 [Salinispora arenicola CNS-205]
Length=110
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/82 (53%), Positives = 55/82 (68%), Gaps = 1/82 (1%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR R A ELLR+VAV G G +++ D LPGRGA +HP C QA+RRRA
Sbjct 9 RTCVGCRSRAPARELLRIVAVGDGAG-HSLRPDPTRRLPGRGAHVHPDPACFAQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G PD + ++L++
Sbjct 68 FGRALRVTGVPDHGELAKHLDA 89
>gi|145593917|ref|YP_001158214.1| hypothetical protein Strop_1369 [Salinispora tropica CNB-440]
gi|145303254|gb|ABP53836.1| protein of unknown function DUF448 [Salinispora tropica CNB-440]
Length=110
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/82 (53%), Positives = 54/82 (66%), Gaps = 1/82 (1%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR R ELLRVVAV G G +++ D + LPGRGA +HP C QA+RRRA
Sbjct 9 RTCVGCRSRASTKELLRVVAVGDGAG-HSLRPDPSRRLPGRGAHVHPDPACFAQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G PD + +L++
Sbjct 68 FGRALRVTGVPDHGELATHLDA 89
>gi|296129356|ref|YP_003636606.1| hypothetical protein Cfla_1509 [Cellulomonas flavigena DSM 20109]
gi|296021171|gb|ADG74407.1| protein of unknown function DUF448 [Cellulomonas flavigena DSM
20109]
Length=140
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/89 (50%), Positives = 53/89 (60%), Gaps = 0/89 (0%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR G LLRVV G G A++ D +PGRGAWLHP ++C + A+RRR
Sbjct 36 VRTCVGCRATGRRSALLRVVLSDVGAGEPALVADERRRMPGRGAWLHPDQRCLELAVRRR 95
Query 61 AFARALRIAGSPDTSAVVEYLESLGELEP 89
AF RALR G T AV + L +P
Sbjct 96 AFGRALRYTGPLGTEAVERAVTRLAAQQP 124
>gi|291436936|ref|ZP_06576326.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
gi|291339831|gb|EFE66787.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
14672]
Length=93
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (68%), Gaps = 5/82 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR++ L ELLR+VA+ A + D +LPGRGA++HP++ C QA+RRRA
Sbjct 13 RTCVGCREQALKSELLRIVAIED-----ACVPDPRGTLPGRGAYVHPVQVCLDQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G D A+ Y+E
Sbjct 68 FPRALRVPGPLDVKALRRYVEQ 89
>gi|88855367|ref|ZP_01130031.1| hypothetical protein A20C1_01051 [marine actinobacterium PHSC20C1]
gi|88815274|gb|EAR25132.1| hypothetical protein A20C1_01051 [marine actinobacterium PHSC20C1]
Length=112
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/81 (50%), Positives = 53/81 (66%), Gaps = 5/81 (6%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR G LLRV+A + AV+VD + +LPGRGAW+HP C A++RR
Sbjct 20 VRTCVGCRASGTRSSLLRVIA-----SHGAVVVDHSATLPGRGAWIHPTTSCVDNAVKRR 74
Query 61 AFARALRIAGSPDTSAVVEYL 81
AF+RAL++ DT A++ L
Sbjct 75 AFSRALKVNSPLDTGALLSVL 95
>gi|117928723|ref|YP_873274.1| hypothetical protein Acel_1516 [Acidothermus cellulolyticus 11B]
gi|117649186|gb|ABK53288.1| protein of unknown function DUF448 [Acidothermus cellulolyticus
11B]
Length=113
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/83 (49%), Positives = 56/83 (68%), Gaps = 1/83 (1%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYA-VIVDTATSLPGRGAWLHPLRQCAQQAIRR 59
+RTC+GCR+R +LLR+V + +G A V+ D +PGRGA+LHP C +QA+RR
Sbjct 15 IRTCIGCRQRAAKTDLLRLVVRADDDGRSARVVPDPRGRMPGRGAYLHPDPACLEQALRR 74
Query 60 RAFARALRIAGSPDTSAVVEYLE 82
R+ RALR++G +TS V YLE
Sbjct 75 RSLPRALRVSGPVETSGVRRYLE 97
>gi|50954462|ref|YP_061750.1| hypothetical protein Lxx07140 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950944|gb|AAT88645.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length=86
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/83 (50%), Positives = 54/83 (66%), Gaps = 5/83 (6%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR R + LLRVV N ++VD + + PGRGAWLHP+ C A++RR
Sbjct 4 VRTCVGCRSRAPRLSLLRVVV-----RNSELVVDPSAAFPGRGAWLHPVDGCLDLALKRR 58
Query 61 AFARALRIAGSPDTSAVVEYLES 83
AF RALR+ G+ D +A+ Y E+
Sbjct 59 AFGRALRVDGTLDPTALRAYYEN 81
>gi|325962806|ref|YP_004240712.1| nucleic-acid-binding protein implicated in transcription termination
[Arthrobacter phenanthrenivorans Sphe3]
gi|323468893|gb|ADX72578.1| putative nucleic-acid-binding protein implicated in transcription
termination [Arthrobacter phenanthrenivorans Sphe3]
Length=118
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/82 (54%), Positives = 55/82 (68%), Gaps = 4/82 (4%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTC+GCRK+GL ELLR+VA G+G+ AV+VD + GRGAWLHP C AI+RRA
Sbjct 18 RTCIGCRKKGLRSELLRLVA--EGSGSSAVLVDERRRMAGRGAWLHPSESCLALAIKRRA 75
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RAL G+ T AV ++S
Sbjct 76 FGRAL--GGATGTDAVERRIKS 95
>gi|297202733|ref|ZP_06920130.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|297148180|gb|EFH28867.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length=93
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/82 (49%), Positives = 53/82 (65%), Gaps = 5/82 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R +LLR+VA+ A + D +LPGRGA++HP C QA+RRR
Sbjct 13 RTCVGCRQRAAKTDLLRIVAIKD-----ACVPDPRGTLPGRGAYIHPALVCFDQAVRRRV 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR G+ DT A+ +Y+E
Sbjct 68 FTRALRAPGALDTKALRQYVEQ 89
>gi|302558071|ref|ZP_07310413.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302475689|gb|EFL38782.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length=93
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/82 (49%), Positives = 52/82 (64%), Gaps = 5/82 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R + ELLR+V + A + D +LPGRGA++HP C QA+RRRA
Sbjct 13 RTCVGCRERAVKSELLRIVVIED-----ACVPDPRGTLPGRGAYVHPAPVCLDQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G D A+ Y+E
Sbjct 68 FPRALRVPGPLDVKALRHYVEQ 89
>gi|302554523|ref|ZP_07306865.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
gi|302472141|gb|EFL35234.1| conserved hypothetical protein [Streptomyces viridochromogenes
DSM 40736]
Length=98
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/81 (50%), Positives = 55/81 (68%), Gaps = 5/81 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R + +LLR+VA+ A + D +LPGRGA++HP C QA+RRRA
Sbjct 13 RTCVGCRERAVKADLLRIVAIKD-----ACVPDPRGTLPGRGAYVHPSPVCLDQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLE 82
F RALR G+ DT A+ +++E
Sbjct 68 FTRALRAPGALDTKALRQHVE 88
>gi|84498576|ref|ZP_00997339.1| hypothetical protein JNB_20328 [Janibacter sp. HTCC2649]
gi|84381109|gb|EAP96994.1| hypothetical protein JNB_20328 [Janibacter sp. HTCC2649]
Length=122
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/96 (49%), Positives = 55/96 (58%), Gaps = 7/96 (7%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCR LLRVV G A++ D LPGRGAWLHP C A+RRR
Sbjct 30 VRTCVGCRVSDSRSALLRVVV----GGPGALVPDLRRCLPGRGAWLHPTGDCFDLAVRRR 85
Query 61 AFARALRIAGSPDTSAVVEYL---ESLGELEPPGNR 93
AF RALR++ DT+AV E++ E PGNR
Sbjct 86 AFGRALRVSVPLDTAAVAEWIATHEQTTNQPSPGNR 121
>gi|21224054|ref|NP_629833.1| hypothetical protein SCO5705 [Streptomyces coelicolor A3(2)]
gi|289768762|ref|ZP_06528140.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|7801277|emb|CAB91141.1| hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289698961|gb|EFD66390.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length=101
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 52/82 (64%), Gaps = 5/82 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R + ELLR VAV G+ D +LPGRGA++HP C QA+RR+A
Sbjct 13 RTCVGCRERAVKSELLRTVAV---EGH--CTPDPRGTLPGRGAYVHPAPDCVDQAVRRKA 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G D A+ Y+E
Sbjct 68 FPRALRVPGPLDVKALRHYVEQ 89
>gi|334336729|ref|YP_004541881.1| protein of unknown function DUF448 [Isoptericola variabilis 225]
gi|334107097|gb|AEG43987.1| protein of unknown function DUF448 [Isoptericola variabilis 225]
Length=117
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/84 (53%), Positives = 50/84 (60%), Gaps = 1/84 (1%)
Query 1 VRTCVGCRKRGLAVELLRVV-AVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRR 59
VRTCVGCR+R L LLR+V S G G + D LPGRGAW+HP C A RR
Sbjct 31 VRTCVGCRERDLRSALLRLVLEPSDGRGESRAVADVRGCLPGRGAWIHPSPACLGLAERR 90
Query 60 RAFARALRIAGSPDTSAVVEYLES 83
RA RALR+AG D + V YLE
Sbjct 91 RAVPRALRVAGPVDLTPVRAYLEQ 114
>gi|295836230|ref|ZP_06823163.1| ribosomal protein L7Ae family protein [Streptomyces sp. SPB74]
gi|295825915|gb|EFG64549.1| ribosomal protein L7Ae family protein [Streptomyces sp. SPB74]
Length=98
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/81 (49%), Positives = 54/81 (67%), Gaps = 5/81 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R ELLR V V + A++ D +LPGRGA++HP+ C + A+RRR+
Sbjct 13 RTCVGCRERAAKNELLRTVMV-----DGALLPDPRGTLPGRGAYVHPVPACTESAVRRRS 67
Query 62 FARALRIAGSPDTSAVVEYLE 82
F RALR+ G DT+ + Y+E
Sbjct 68 FPRALRVQGPLDTAELRRYVE 88
>gi|302528541|ref|ZP_07280883.1| conserved hypothetical protein [Streptomyces sp. AA4]
gi|302437436|gb|EFL09252.1| conserved hypothetical protein [Streptomyces sp. AA4]
Length=129
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/71 (58%), Positives = 48/71 (68%), Gaps = 5/71 (7%)
Query 1 VRTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRR 60
VRTCVGCRKR L ELLRVVA + ++VD LPGRGAWLHP C +A R+R
Sbjct 30 VRTCVGCRKRDLTAELLRVVAA-----DGRLVVDERRRLPGRGAWLHPGPGCLAKAERKR 84
Query 61 AFARALRIAGS 71
AF RALR+ G+
Sbjct 85 AFPRALRVQGA 95
>gi|238063381|ref|ZP_04608090.1| hypothetical protein MCAG_04347 [Micromonospora sp. ATCC 39149]
gi|237885192|gb|EEP74020.1| hypothetical protein MCAG_04347 [Micromonospora sp. ATCC 39149]
Length=110
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/82 (49%), Positives = 54/82 (66%), Gaps = 1/82 (1%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R A ELLR+VA+ G +++ D A LPGRGA +HP C A+RRRA
Sbjct 9 RTCVGCRRRAPASELLRIVAIGDEAG-HSLRPDPARRLPGRGANMHPDPACFALAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G D + E++++
Sbjct 68 FGRALRVTGVVDHGVLAEHVDA 89
>gi|302522225|ref|ZP_07274567.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|318062642|ref|ZP_07981363.1| hypothetical protein SSA3_32222 [Streptomyces sp. SA3_actG]
gi|318077763|ref|ZP_07985095.1| hypothetical protein SSA3_13843 [Streptomyces sp. SA3_actF]
gi|302431120|gb|EFL02936.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length=92
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/82 (48%), Positives = 54/82 (66%), Gaps = 5/82 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R ELLR V V + A++ D +LPGRGA++HP+ C + A+RRR+
Sbjct 13 RTCVGCRERAAKNELLRTVMV-----DGALLPDPRGTLPGRGAYVHPVPACTELAVRRRS 67
Query 62 FARALRIAGSPDTSAVVEYLES 83
F RALR+ G DT+ + Y+E
Sbjct 68 FPRALRVQGPLDTAELRRYVEQ 89
>gi|302537261|ref|ZP_07289603.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302446156|gb|EFL17972.1| conserved hypothetical protein [Streptomyces sp. C]
Length=95
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/88 (48%), Positives = 54/88 (62%), Gaps = 5/88 (5%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R +LLRVVA+ + D +LPGRGA++HP C QA+RRRA
Sbjct 13 RTCVGCRERAAKSDLLRVVAIGD-----ECVSDPRGTLPGRGAYVHPAVVCLDQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYLESLGELEP 89
F RALR AG+ DT + + L + E P
Sbjct 68 FPRALRSAGALDTEGLRKTLAAPAEATP 95
>gi|254382097|ref|ZP_04997459.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194341004|gb|EDX21970.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length=95
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (67%), Gaps = 5/80 (6%)
Query 2 RTCVGCRKRGLAVELLRVVAVSTGNGNYAVIVDTATSLPGRGAWLHPLRQCAQQAIRRRA 61
RTCVGCR+R +LLR+VA+ + DT +LPGRGA++HP C QA+RRRA
Sbjct 13 RTCVGCRERAAKSDLLRIVAIGD-----ECVPDTRGTLPGRGAYVHPAAVCLDQAVRRRA 67
Query 62 FARALRIAGSPDTSAVVEYL 81
F RALR AG+ DT+ + + L
Sbjct 68 FPRALRSAGTLDTTELRKAL 87
Lambda K H
0.320 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129711308684
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40