BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2841c Length=347 Score E Sequences producing significant alignments: (Bits) Value gi|18158875|pdb|1K0R|A Chain A, Crystal Structure Of Mycobacteri... 699 0.0 gi|15609978|ref|NP_217357.1| transcription elongation factor Nus... 698 0.0 gi|289444392|ref|ZP_06434136.1| transcription termination factor... 697 0.0 gi|289448503|ref|ZP_06438247.1| N utilization substance protein ... 697 0.0 gi|15842382|ref|NP_337419.1| transcription elongation factor Nus... 689 0.0 gi|240172759|ref|ZP_04751418.1| transcription elongation factor ... 666 0.0 gi|183981905|ref|YP_001850196.1| N utilization substance protein... 657 0.0 gi|118617680|ref|YP_906012.1| transcription elongation factor Nu... 651 0.0 gi|296171600|ref|ZP_06852840.1| transcription elongation factor ... 645 0.0 gi|254821852|ref|ZP_05226853.1| transcription elongation factor ... 644 0.0 gi|342858327|ref|ZP_08714982.1| transcription elongation factor ... 644 0.0 gi|15827820|ref|NP_302083.1| transcription elongation factor Nus... 644 0.0 gi|41409007|ref|NP_961843.1| transcription elongation factor Nus... 627 9e-178 gi|118462823|ref|YP_882872.1| transcription elongation factor Nu... 625 3e-177 gi|108799047|ref|YP_639244.1| transcription elongation factor Nu... 593 2e-167 gi|118470868|ref|YP_886962.1| transcription elongation factor Nu... 584 7e-165 gi|145224621|ref|YP_001135299.1| transcription elongation factor... 579 2e-163 gi|120403303|ref|YP_953132.1| transcription elongation factor Nu... 573 1e-161 gi|169630217|ref|YP_001703866.1| transcription elongation factor... 561 4e-158 gi|333991205|ref|YP_004523819.1| N utilization substance protein... 561 8e-158 gi|226366090|ref|YP_002783873.1| transcription elongation factor... 539 3e-151 gi|111023601|ref|YP_706573.1| transcription elongation factor Nu... 538 4e-151 gi|312139328|ref|YP_004006664.1| transcriptional termination/ant... 537 1e-150 gi|54026039|ref|YP_120281.1| transcription elongation factor Nus... 531 5e-149 gi|226306117|ref|YP_002766077.1| transcription elongation protei... 531 8e-149 gi|262202085|ref|YP_003273293.1| transcription termination facto... 523 1e-146 gi|134102374|ref|YP_001108035.1| transcription elongation factor... 520 1e-145 gi|333919289|ref|YP_004492870.1| transcription elongation protei... 519 3e-145 gi|326382939|ref|ZP_08204629.1| transcription elongation factor ... 513 2e-143 gi|343926767|ref|ZP_08766264.1| transcription elongation protein... 508 4e-142 gi|257055490|ref|YP_003133322.1| transcription elongation factor... 504 1e-140 gi|258652414|ref|YP_003201570.1| transcription elongation factor... 504 1e-140 gi|296139427|ref|YP_003646670.1| NusA antitermination factor [Ts... 497 1e-138 gi|256379832|ref|YP_003103492.1| transcription elongation factor... 496 2e-138 gi|340529770|gb|AEK44975.1| transcription elongation factor NusA... 494 6e-138 gi|300788185|ref|YP_003768476.1| transcription elongation factor... 494 6e-138 gi|302528542|ref|ZP_07280884.1| transcription termination factor... 494 1e-137 gi|331698436|ref|YP_004334675.1| NusA antitermination factor [Ps... 487 1e-135 gi|82407871|pdb|2ASB|A Chain A, Structure Of A Mycobacterium Tub... 486 2e-135 gi|325000941|ref|ZP_08122053.1| transcription elongation factor ... 485 4e-135 gi|317508529|ref|ZP_07966195.1| transcription termination factor... 462 5e-128 gi|296394257|ref|YP_003659141.1| transcription termination facto... 453 2e-125 gi|319951028|ref|ZP_08024892.1| transcription elongation factor ... 446 3e-123 gi|159036964|ref|YP_001536217.1| transcription elongation factor... 432 3e-119 gi|330466360|ref|YP_004404103.1| transcription elongation factor... 432 4e-119 gi|117928724|ref|YP_873275.1| transcription elongation factor Nu... 431 1e-118 gi|145593916|ref|YP_001158213.1| transcription elongation factor... 429 3e-118 gi|315502523|ref|YP_004081410.1| nusa antitermination factor [Mi... 429 5e-118 gi|302865966|ref|YP_003834603.1| transcription termination facto... 429 5e-118 gi|326333613|ref|ZP_08199851.1| transcription termination factor... 427 1e-117 >gi|18158875|pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa gi|18158876|pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa Length=366 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/347 (100%), Positives = 347/347 (100%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR Sbjct 20 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 79 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 80 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 139 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT Sbjct 140 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 199 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG Sbjct 200 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 259 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 260 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 319 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR Sbjct 320 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 366 >gi|15609978|ref|NP_217357.1| transcription elongation factor NusA [Mycobacterium tuberculosis H37Rv] gi|31794018|ref|NP_856511.1| transcription elongation factor NusA [Mycobacterium bovis AF2122/97] gi|121638721|ref|YP_978945.1| transcription elongation factor NusA [Mycobacterium bovis BCG str. Pasteur 1173P2] 72 more sequence titles Length=347 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/347 (100%), Positives = 347/347 (100%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 >gi|289444392|ref|ZP_06434136.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] gi|289417311|gb|EFD14551.1| transcription termination factor NusA [Mycobacterium tuberculosis T46] Length=347 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/347 (99%), Positives = 346/347 (99%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVRIGTETKASEGVIPA EQVPGESYEHGNRLRCYVVGVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRIGTETKASEGVIPATEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 >gi|289448503|ref|ZP_06438247.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] gi|289421461|gb|EFD18662.1| N utilization substance protein A nusA [Mycobacterium tuberculosis CPHL_A] Length=347 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/347 (99%), Positives = 347/347 (100%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGK+GQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR Sbjct 301 LAIGKDGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 >gi|15842382|ref|NP_337419.1| transcription elongation factor NusA [Mycobacterium tuberculosis CDC1551] gi|13882681|gb|AAK47233.1| N utilization substance protein A [Mycobacterium tuberculosis CDC1551] Length=343 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/343 (100%), Positives = 343/343 (100%), Gaps = 0/343 (0%) Query 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARETDE 64 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARETDE Sbjct 1 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARETDE 60 Query 65 AGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR 124 AGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR Sbjct 61 AGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR 120 Query 125 ANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRT 184 ANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRT Sbjct 121 ANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRT 180 Query 185 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVR 244 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVR Sbjct 181 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVR 240 Query 245 NVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG 304 NVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG Sbjct 241 NVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG 300 Query 305 KEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 KEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR Sbjct 301 KEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 343 >gi|240172759|ref|ZP_04751418.1| transcription elongation factor NusA [Mycobacterium kansasii ATCC 12478] Length=347 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/347 (96%), Positives = 338/347 (98%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALL+AYRHTQGHQTDARIEIDRK+GVVRVIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLSAYRHTQGHQTDARIEIDRKSGVVRVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D+ GNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ELDDEGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+G+ETKASEGVIPAAEQVPGESYEHGNRLRCYVVGV+RGAREPLIT Sbjct 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVSRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQ ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQNARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD+P P GQPE G SRGMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPAHPAGQPEQGASRGMAHDR 347 >gi|183981905|ref|YP_001850196.1| N utilization substance protein a NusA [Mycobacterium marinum M] gi|183175231|gb|ACC40341.1| N utilization substance protein a NusA [Mycobacterium marinum M] Length=347 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/346 (94%), Positives = 336/346 (98%), Gaps = 0/346 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT Sbjct 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346 LAIGKEGQNARLAARLTGWRIDIRGD+P PE G SRG+AHD Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346 >gi|118617680|ref|YP_906012.1| transcription elongation factor NusA [Mycobacterium ulcerans Agy99] gi|118569790|gb|ABL04541.1| N utilization substance protein a NusA [Mycobacterium ulcerans Agy99] Length=347 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/346 (94%), Positives = 334/346 (97%), Gaps = 0/346 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT Sbjct 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DP RFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346 LAIGKEGQNARLAARLTGW IDIRGD+P PE G SRG+AHD Sbjct 301 LAIGKEGQNARLAARLTGWWIDIRGDSPEQSAEHPERGASRGLAHD 346 >gi|296171600|ref|ZP_06852840.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894055|gb|EFG73817.1| transcription elongation factor NusA [Mycobacterium parascrofulaceum ATCC BAA-614] Length=351 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/351 (92%), Positives = 334/351 (96%), Gaps = 4/351 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVV+V+AR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVVAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+GTETKASEGVIPAAEQVPGESYEHGNR+RCYV+GVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV+SNV GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DP+RFVANALSPAKVVSVS+ID ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPSRFVANALSPAKVVSVSIIDPNARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAP----PPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD P G PE G +RGMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDTPGGSEGHSEGHPEHGATRGMAHDR 351 >gi|254821852|ref|ZP_05226853.1| transcription elongation factor NusA [Mycobacterium intracellulare ATCC 13950] Length=348 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/348 (93%), Positives = 334/348 (96%), Gaps = 1/348 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVVRVIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVRVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDE N+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEDDNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+GTETKASEGVIPAAEQVPGESYEHGNR+RCYV+GVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIAD SVEIVAVAREAGHRSKIAV+SN+ GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADESVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVS+ID +ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSIIDPSARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAP-PPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD+P P +PE G + GMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGHPENEPEHGATHGMAHDR 348 >gi|342858327|ref|ZP_08714982.1| transcription elongation factor NusA [Mycobacterium colombiense CECT 3035] gi|342134031|gb|EGT87211.1| transcription elongation factor NusA [Mycobacterium colombiense CECT 3035] Length=351 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/351 (92%), Positives = 333/351 (95%), Gaps = 4/351 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVVRV+AR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVRVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDE N+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEDDNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+GTETKASEGVIPAAEQVPGESYEHGNR+RCYV+GVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIAD SVEIVAVAREAGHRSKIAV+SN+ GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADESVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPG----QPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD+P G Q E G S GMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGSGGHSESQSEHGASHGMAHDR 351 >gi|15827820|ref|NP_302083.1| transcription elongation factor NusA [Mycobacterium leprae TN] gi|221230297|ref|YP_002503713.1| transcription elongation factor NusA [Mycobacterium leprae Br4923] gi|20139308|sp|Q9Z5J1.1|NUSA_MYCLE RecName: Full=Transcription elongation protein nusA gi|4455676|emb|CAB36568.1| putative transcriptional termination/antitermination factor [Mycobacterium leprae] gi|13093372|emb|CAC30509.1| probable transcription termination/antitermination factor [Mycobacterium leprae] gi|219933404|emb|CAR71653.1| probable transcription termination/antitermination factor [Mycobacterium leprae Br4923] Length=347 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/347 (92%), Positives = 332/347 (96%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+VIAR Sbjct 1 MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+G+ETKASEGVIPAAEQV GESYEHGNRLRCYVVGVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S V GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD+PP GQ E S GMAH+R Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHER 347 >gi|41409007|ref|NP_961843.1| transcription elongation factor NusA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397366|gb|AAS05226.1| NusA [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458995|gb|EGO37947.1| transcription termination factor NusA [Mycobacterium avium subsp. paratuberculosis S397] Length=351 Score = 627 bits (1617), Expect = 9e-178, Method: Compositional matrix adjust. Identities = 324/351 (93%), Positives = 335/351 (96%), Gaps = 4/351 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVV+VIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDE GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+GTETKASEGVIPAAEQVPGESYEHGNR+RCYV+GVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV+SN+ GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ----PEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD+P G PE G + GMAHDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEHGATHGMAHDR 351 >gi|118462823|ref|YP_882872.1| transcription elongation factor NusA [Mycobacterium avium 104] gi|118164110|gb|ABK65007.1| transcription termination factor NusA [Mycobacterium avium 104] Length=351 Score = 625 bits (1612), Expect = 3e-177, Method: Compositional matrix adjust. Identities = 323/351 (93%), Positives = 334/351 (96%), Gaps = 4/351 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVV+VIAR Sbjct 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETDE GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ Sbjct 61 ETDEDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RDSRANARGLVVVR+GTETKASEGVIPAAEQVPGESYEHGNR+RCYV+GVTRGAREPLIT Sbjct 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV+SN+ GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ----PEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIRGD+P G PE G + GM HDR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEHGATHGMVHDR 351 >gi|108799047|ref|YP_639244.1| transcription elongation factor NusA [Mycobacterium sp. MCS] gi|119868162|ref|YP_938114.1| transcription elongation factor NusA [Mycobacterium sp. KMS] gi|126434650|ref|YP_001070341.1| transcription elongation factor NusA [Mycobacterium sp. JLS] gi|108769466|gb|ABG08188.1| NusA antitermination factor [Mycobacterium sp. MCS] gi|119694251|gb|ABL91324.1| NusA antitermination factor [Mycobacterium sp. KMS] gi|126234450|gb|ABN97850.1| NusA antitermination factor [Mycobacterium sp. JLS] Length=347 Score = 593 bits (1528), Expect = 2e-167, Method: Compositional matrix adjust. Identities = 292/347 (85%), Positives = 316/347 (92%), Gaps = 0/347 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIE D+GISV+ +++TIKSALLTAYRHT+GHQ DARI+IDRK+G V+V+AR Sbjct 1 MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD GNLI EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ Sbjct 61 ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARGLVVVR+G+ETK +EGVIPAAEQVPGE YEHG+RLRCYVVGVTRGAREPLIT Sbjct 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEI DGSV+IVAVAREAGHRSKIAV S V GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVID+ RAARVVVPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIR DA PP +P+ + DR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRDR 347 >gi|118470868|ref|YP_886962.1| transcription elongation factor NusA [Mycobacterium smegmatis str. MC2 155] gi|118172155|gb|ABK73051.1| transcription termination factor NusA [Mycobacterium smegmatis str. MC2 155] Length=343 Score = 584 bits (1506), Expect = 7e-165, Method: Compositional matrix adjust. Identities = 287/329 (88%), Positives = 310/329 (95%), Gaps = 0/329 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIE D+GISV+ ++ETIKSALLTAYRHT GH+ DARI+IDRKTGVV+VIAR Sbjct 1 MNIDMAALHAIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKVIAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 +TD GN+++EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEF+ EG+IVAGVIQ Sbjct 61 QTDADGNVLAEWDDTPEGFGRIAATTARQVILQRLRDAENEKVYGEFAAHEGDIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARGLVVVR+G+ETK SEGVIPAAEQVPGE YEHG+R+RCYVVGVTRGAREPLIT Sbjct 121 RDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRVRCYVVGVTRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV S V GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVID+ RAARV+VPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEAGRAARVIVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR DA P Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDAAP 329 >gi|145224621|ref|YP_001135299.1| transcription elongation factor NusA [Mycobacterium gilvum PYR-GCK] gi|315444953|ref|YP_004077832.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] gi|145217107|gb|ABP46511.1| NusA antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315263256|gb|ADT99997.1| transcription termination factor NusA [Mycobacterium sp. Spyr1] Length=353 Score = 579 bits (1492), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 283/326 (87%), Positives = 308/326 (95%), Gaps = 0/326 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIE D+GI+V+ ++ETIKSALLTAYRHT+GH+ DA I+IDRKTGVV+V+AR Sbjct 1 MNIDMAALHAIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 +TDE GN++ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ Sbjct 61 QTDEDGNVLHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARGLVVVR+G+ETK SEGVIPAAEQVPGE YEHG+RLRCYVVGV RGAREP+IT Sbjct 121 RDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYVVGVARGAREPVIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV S GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVTSRAPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSV+VID+ ARAARV+VPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAARAARVIVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGD 326 LAIGKEGQNARLAARLTGWRIDIR D Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSD 326 >gi|120403303|ref|YP_953132.1| transcription elongation factor NusA [Mycobacterium vanbaalenii PYR-1] gi|119956121|gb|ABM13126.1| NusA antitermination factor [Mycobacterium vanbaalenii PYR-1] Length=333 Score = 573 bits (1478), Expect = 1e-161, Method: Compositional matrix adjust. Identities = 280/322 (87%), Positives = 304/322 (95%), Gaps = 0/322 (0%) Query 5 MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARETDE 64 MAALHAIE D+GISV+ +++TIKSALLTAYRHT+GH+ DA I+IDRKTG V+VIAR+TDE Sbjct 1 MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKVIARQTDE 60 Query 65 AGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR 124 GN++ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQRD+R Sbjct 61 DGNVLHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQRDAR 120 Query 125 ANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRT 184 ANARGLVVVR+G+ETK SEGVIPAAEQVPGE YEHG+RLRCYVVGVTRGAREPLITLSRT Sbjct 121 ANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLITLSRT 180 Query 185 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVR 244 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV + GLNAKGACIGPMGQRVR Sbjct 181 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVATRAPGLNAKGACIGPMGQRVR 240 Query 245 NVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG 304 NVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSV+VID+ ARAARV+VPDFQLSLAIG Sbjct 241 NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAARAARVIVPDFQLSLAIG 300 Query 305 KEGQNARLAARLTGWRIDIRGD 326 KEGQNARLAARLTGWRIDIR D Sbjct 301 KEGQNARLAARLTGWRIDIRSD 322 >gi|169630217|ref|YP_001703866.1| transcription elongation factor NusA [Mycobacterium abscessus ATCC 19977] gi|169242184|emb|CAM63212.1| Transcription elongation protein NusA [Mycobacterium abscessus] Length=331 Score = 561 bits (1447), Expect = 4e-158, Method: Compositional matrix adjust. Identities = 277/329 (85%), Positives = 302/329 (92%), Gaps = 0/329 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID AA++ + D+GI+V+E ++ IKSALLTAYRHT GH+ +ARIEIDRKTGVVRV+AR Sbjct 1 MNIDPAAVNLMAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD+ GNLI+EWD TPEGFGRIAATTARQV Q RDAENE +GEFSTREGEIV GVIQ Sbjct 61 ETDQDGNLITEWDATPEGFGRIAATTARQVFQQGVRDAENEHKFGEFSTREGEIVGGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARGLVVVR+G+ETK SEGVIP+AEQVPGE Y HG+RLRCYVVGV+RGAREPLIT Sbjct 121 RDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRLRCYVVGVSRGAREPLIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEI+DGSVEIVAVAREAGHRSKIAV S V+GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVASKVSGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDYD DPARFVANALSPAKVVSVSVID+ +AARV+VPDFQLS Sbjct 241 QRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVIDEAGKAARVIVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR DA P Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDADP 329 >gi|333991205|ref|YP_004523819.1| N utilization substance protein a NusA [Mycobacterium sp. JDM601] gi|333487173|gb|AEF36565.1| N utilization substance protein a NusA [Mycobacterium sp. JDM601] Length=347 Score = 561 bits (1445), Expect = 8e-158, Method: Compositional matrix adjust. Identities = 277/346 (81%), Positives = 307/346 (89%), Gaps = 0/346 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAALHAIE D+GI V ++ETIKSALLTAYRHT+GHQ DA I++DRK+G+VRV+AR Sbjct 1 MNIDMAALHAIEADKGIPVEVVVETIKSALLTAYRHTEGHQADAVIDVDRKSGMVRVLAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD GN+ISE+DDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGV+Q Sbjct 61 ETDADGNIISEYDDTPEGFGRIAATTARQVILQRLRDAENEKAYGEFSAREGDIVAGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+R NARG+VVVR+GTE K +GVI +EQ PGE+YEHG+RLRCYV+GVTRG REP I Sbjct 121 RDARENARGVVVVRLGTEAKGFDGVIRPSEQAPGEAYEHGDRLRCYVIGVTRGLREPRIE 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPEIADGSVEIVAVARE GHRSKIAV S V GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFALEVPEIADGSVEIVAVAREPGHRSKIAVASGVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKIDIIDYD+DPARFV NALSPAKV+SV+VIDQTARAARVVVPDFQLS Sbjct 241 QRVRNVMSELAGEKIDIIDYDEDPARFVGNALSPAKVMSVTVIDQTARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346 LAIGKEGQNARLAARLTGWRIDIR D P P E V G+A + Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDTPEPGANGAEQEVGGGVAQE 346 >gi|226366090|ref|YP_002783873.1| transcription elongation factor NusA [Rhodococcus opacus B4] gi|226244580|dbj|BAH54928.1| transcription elongation protein NusA [Rhodococcus opacus B4] Length=343 Score = 539 bits (1388), Expect = 3e-151, Method: Compositional matrix adjust. Identities = 260/332 (79%), Positives = 298/332 (90%), Gaps = 1/332 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL AIE D+GIS+ ++ TI++ALLTAYRHT+GHQ ARI++D K+G+VRV+A Sbjct 1 MNIDIAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVMAH 60 Query 61 ETDEAGNLISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119 + D GN++ E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GE+ST EGEIV GVI Sbjct 61 DVDSDGNMVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEYSTHEGEIVGGVI 120 Query 120 QRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLI 179 QRD+RAN+RG+VVVRIG+E +EG+IP AEQVPGE+YEHG RL+CYVVGV RG R P I Sbjct 121 QRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYVVGVARGQRGPQI 180 Query 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPM 239 TLSRTHPNLVRKLF+LEVPEIADGSVEI+AVAREAGHRSKIAV+S V GLNAKGACIGPM Sbjct 181 TLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQGLNAKGACIGPM 240 Query 240 GQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299 GQRVRNVMSEL+GEKIDIID+D+DPARFV NALSP+KVVSV+V+D ARAARVVVPDFQL Sbjct 241 GQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPEARAARVVVPDFQL 300 Query 300 SLAIGKEGQNARLAARLTGWRIDIRGDAPPPP 331 SLAIGKEGQNARLAARLTGWRIDIR DA P P Sbjct 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPAP 332 >gi|111023601|ref|YP_706573.1| transcription elongation factor NusA [Rhodococcus jostii RHA1] gi|110823131|gb|ABG98415.1| transcription elongation protein NusA [Rhodococcus jostii RHA1] Length=343 Score = 538 bits (1387), Expect = 4e-151, Method: Compositional matrix adjust. Identities = 260/332 (79%), Positives = 298/332 (90%), Gaps = 1/332 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL AIE D+GIS+ ++ TI++ALLTAYRHT+GHQ ARI++D K+G+VRV+A Sbjct 1 MNIDIAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVMAH 60 Query 61 ETDEAGNLISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119 + D GN++ E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GE+ST EGEIV GVI Sbjct 61 DVDADGNMVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEYSTHEGEIVGGVI 120 Query 120 QRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLI 179 QRD+RAN+RG+VVVRIG+E +EG+IP AEQVPGE+YEHG RL+CYVVGV RG R P I Sbjct 121 QRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYVVGVARGQRGPQI 180 Query 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPM 239 TLSRTHPNLVRKLF+LEVPEIADGSVEI+AVAREAGHRSKIAV+S V GLNAKGACIGPM Sbjct 181 TLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQGLNAKGACIGPM 240 Query 240 GQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299 GQRVRNVMSEL+GEKIDIID+D+DPARFV NALSP+KVVSV+V+D ARAARVVVPDFQL Sbjct 241 GQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPDARAARVVVPDFQL 300 Query 300 SLAIGKEGQNARLAARLTGWRIDIRGDAPPPP 331 SLAIGKEGQNARLAARLTGWRIDIR DA P P Sbjct 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPAP 332 >gi|312139328|ref|YP_004006664.1| transcriptional termination/antitermination factor nusa [Rhodococcus equi 103S] gi|325676662|ref|ZP_08156337.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] gi|311888667|emb|CBH47979.1| transcriptional termination/antitermination factor NusA [Rhodococcus equi 103S] gi|325552517|gb|EGD22204.1| transcription elongation factor NusA [Rhodococcus equi ATCC 33707] Length=343 Score = 537 bits (1383), Expect = 1e-150, Method: Compositional matrix adjust. Identities = 262/335 (79%), Positives = 298/335 (89%), Gaps = 1/335 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL AIE D+GIS ++ I++ALLTAYRHT+GHQ ARI++D K+GVVRV+AR Sbjct 1 MNIDIAALRAIEADKGISAGTIIAAIETALLTAYRHTEGHQPHARIDVDTKSGVVRVMAR 60 Query 61 ETDEAGNLISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119 + D GN + E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GEF+T EGEIV GVI Sbjct 61 DVDSDGNQVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEFATHEGEIVGGVI 120 Query 120 QRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLI 179 QRD+RANARG+VVVRIG+E +EG+IP AEQVPGE+YEHG+R++CYVVGV+RG R P I Sbjct 121 QRDTRANARGMVVVRIGSEANGAEGLIPPAEQVPGETYEHGDRIKCYVVGVSRGQRGPQI 180 Query 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPM 239 TLSRTHPNLVRKLF+LEVPEIADGSVEIVAVARE+GHRSKIAV S V GLNAKGACIGPM Sbjct 181 TLSRTHPNLVRKLFALEVPEIADGSVEIVAVARESGHRSKIAVHSRVPGLNAKGACIGPM 240 Query 240 GQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299 GQRVRNVMSEL+GEKIDIIDYD+DPA+FV NALSP+KVVSV+V+D ARAARVVVPDFQL Sbjct 241 GQRVRNVMSELAGEKIDIIDYDEDPAKFVGNALSPSKVVSVTVVDPEARAARVVVPDFQL 300 Query 300 SLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ 334 SLAIGKEGQNARLAARLTGWRIDIR DA P P Q Sbjct 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPGPESQ 335 >gi|54026039|ref|YP_120281.1| transcription elongation factor NusA [Nocardia farcinica IFM 10152] gi|54017547|dbj|BAD58917.1| putative transcriptional termination/antitermination factor [Nocardia farcinica IFM 10152] Length=342 Score = 531 bits (1369), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 257/329 (79%), Positives = 296/329 (90%), Gaps = 0/329 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNI++ AL AI D+GIS+ ++ I+SALLTAYRHT+GHQ +AR++I+++TG VRV+AR Sbjct 1 MNIEIEALRAIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVMAR 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D GN+ISEWDDTPEGFGRIAATTARQV+LQR RDAENE+++GEFST EG+IV GV+Q Sbjct 61 ELDADGNVISEWDDTPEGFGRIAATTARQVVLQRLRDAENEKSFGEFSTHEGDIVGGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARG VVVRIG+E +EG+IP AEQVPGE+YEHG+R++CYVVGV+RG R P IT Sbjct 121 RDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYEHGDRIKCYVVGVSRGPRGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVR+LF+LEVPEIADGSVEIVAVAREAGHRSKIAVRS V G+NAKGACIGPMG Sbjct 181 LSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRSKIAVRSTVPGVNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKIDIIDY DDPA FV NALSP+KVVSV+++D ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVVSVTIVDPDARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR DA P Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDAAP 329 >gi|226306117|ref|YP_002766077.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229491401|ref|ZP_04385225.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] gi|226185234|dbj|BAH33338.1| transcription elongation protein NusA [Rhodococcus erythropolis PR4] gi|229321686|gb|EEN87483.1| transcription termination factor NusA [Rhodococcus erythropolis SK121] Length=343 Score = 531 bits (1367), Expect = 8e-149, Method: Compositional matrix adjust. Identities = 258/343 (76%), Positives = 300/343 (88%), Gaps = 1/343 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL AIE ++G+S+ ++ TI++ALLTAYRHT+GH+ +ARI+++ KTG VRV+A Sbjct 1 MNIDIAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVMAH 60 Query 61 ETDEAGNLISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119 +TD GN+I E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GEFST EGEIV GVI Sbjct 61 DTDADGNMIGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEFSTHEGEIVGGVI 120 Query 120 QRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLI 179 QRD+RAN+RG+VVVRIG+E+ +EG++P AEQVPGE+YEHG R++CYVVGV RGAR P I Sbjct 121 QRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGERIKCYVVGVARGARGPQI 180 Query 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPM 239 TLSRTHPNLVRKLF+LEVPEIADGSVEI+ VAREAGHRSKIAV S V GLNAKGACIGPM Sbjct 181 TLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAVASRVQGLNAKGACIGPM 240 Query 240 GQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299 GQRVRNVMSEL+GEKIDIID+D+DPA FV NALSP+KVVSV+V+D ARAARV+VPDFQL Sbjct 241 GQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTVVDPEARAARVIVPDFQL 300 Query 300 SLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRG 342 SLAIGKEGQNARLAARLTGWRIDIR DA P P S G Sbjct 301 SLAIGKEGQNARLAARLTGWRIDIRSDAAPVGDASDRPATSNG 343 >gi|262202085|ref|YP_003273293.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] gi|262085432|gb|ACY21400.1| transcription termination factor NusA [Gordonia bronchialis DSM 43247] Length=340 Score = 523 bits (1348), Expect = 1e-146, Method: Compositional matrix adjust. Identities = 251/331 (76%), Positives = 294/331 (89%), Gaps = 0/331 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+ AL IE D+GIS++ ++ I++ALLTAYRHT+G ARI+++RKTG VRV+A+ Sbjct 1 MNIDINALRMIEADKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVMAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D+ G+++ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ +G+ T EGEIV GV+Q Sbjct 61 ELDDNGDVVHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNFGDLVTHEGEIVGGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +D+RANARG++VV+IG++ ++EG+IP AEQVPGESY HG+R++CYVVGV+RGAR P IT Sbjct 121 QDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGDRIKCYVVGVSRGARGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEI DGSVEIVAVAREAGHRSKIAV + VAGLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAVHTGVAGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKIDIID+D DPA FV NALSPAKVVSVSV+D TA+AARVVVPD+QLS Sbjct 241 QRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVSVVDPTAKAARVVVPDYQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPP 331 LAIGKEGQNARLAARLTGWRIDIR DA P P Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDADPAP 331 >gi|134102374|ref|YP_001108035.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|291004241|ref|ZP_06562214.1| transcription elongation factor NusA [Saccharopolyspora erythraea NRRL 2338] gi|133914997|emb|CAM05110.1| putative transcriptional termination/antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length=352 Score = 520 bits (1339), Expect = 1e-145, Method: Compositional matrix adjust. Identities = 256/332 (78%), Positives = 287/332 (87%), Gaps = 4/332 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL AIE D+GI +LE I+SALLTAYRHT+GHQ AR+E+DRKTGVVRVIA Sbjct 1 MNVDIAALRAIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTGVVRVIAH 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 G + EWDDTPEGFGRIAATTARQV+LQR RDAE+ERT+GEFST+EGEI+ GVIQ Sbjct 61 TLGADGTVAEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSTKEGEILGGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD++AN+RG+V+V++G SEGVIPAAEQVPGE YEHG R++CYVVGV+R AR P IT Sbjct 121 RDAKANSRGMVIVQVGD----SEGVIPAAEQVPGERYEHGMRIKCYVVGVSRSARGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVR+LF+LEVPEIADG+VEI AVAREAGHRSKIAVRS V G+NAKGACIGPMG Sbjct 177 LSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTVGGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVRNVMSEL GEKIDIIDY DDPA FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS Sbjct 237 ARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDERAKTARVVVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPP 332 LAIGKEGQNARLAARLTGWRIDIR DA P P Sbjct 297 LAIGKEGQNARLAARLTGWRIDIRSDADPSSP 328 >gi|333919289|ref|YP_004492870.1| transcription elongation protein NusA [Amycolicicoccus subflavus DQS3-9A1] gi|333481510|gb|AEF40070.1| Transcription elongation protein NusA [Amycolicicoccus subflavus DQS3-9A1] Length=337 Score = 519 bits (1337), Expect = 3e-145, Method: Compositional matrix adjust. Identities = 265/334 (80%), Positives = 301/334 (91%), Gaps = 0/334 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID++AL AIE D+GI V+ ++E I++ALLTAYRHT GHQ ARI+IDRKTG+V VIA Sbjct 1 MNIDISALRAIEDDKGIPVDTVIEAIQTALLTAYRHTAGHQPHARIDIDRKTGIVSVIAC 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E DE GNL++EWDDTPEGFGRIAATTARQV+LQR RDAEN+RTYGE +T EGEIV GV+Q Sbjct 61 EYDEEGNLVAEWDDTPEGFGRIAATTARQVILQRLRDAENDRTYGEVATHEGEIVGGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARGLV+VRIG++ +EGV+P+AEQVPGESYEHG RL+CYVVGV+R R I+ Sbjct 121 RDTRANARGLVIVRIGSDISKTEGVLPSAEQVPGESYEHGVRLKCYVVGVSRTPRGTQIS 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPEIADGSVEIVAVAREAGHRSKIAVRS+V+GLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRSHVSGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKIDIIDYDDDPA+FVANALSP++VVSVS++D ARAARVVVPDFQLS Sbjct 241 QRVRNVMSELAGEKIDIIDYDDDPAKFVANALSPSRVVSVSIVDLAARAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ 334 LAIGKEGQNARLAARLTGWRIDIR DA G+ Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDASDSVAGE 334 >gi|326382939|ref|ZP_08204629.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] gi|326198529|gb|EGD55713.1| transcription elongation factor NusA [Gordonia neofelifaecis NRRL B-59395] Length=347 Score = 513 bits (1321), Expect = 2e-143, Method: Compositional matrix adjust. Identities = 250/338 (74%), Positives = 290/338 (86%), Gaps = 0/338 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 M+ID++AL IE D+G+ +L I++ALLTAYRHT G +ARI+IDRK+G VRV+A+ Sbjct 1 MHIDISALRLIEADKGVPAETVLSAIETALLTAYRHTDGFAPNARIDIDRKSGQVRVMAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E DE N++ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGE EGE+V G++Q Sbjct 61 ELDEDRNVVHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGELVAHEGEVVGGIVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 D++ANARG+V+V+IG+++ A+EGVIP AEQVPGESY+HG+R++CYVVGV RG+R P IT Sbjct 121 ADAKANARGMVIVQIGSDSNATEGVIPPAEQVPGESYKHGDRIKCYVVGVARGSRGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV + VAGLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVHTGVAGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSELSGEKIDIIDY DPA FV +ALSPAKVVSV+VIDQ +AARV+VPD+QLS Sbjct 241 QRVRNVMSELSGEKIDIIDYATDPAEFVGHALSPAKVVSVTVIDQETKAARVIVPDYQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPG 338 LAIGKEGQNARLAARLTGWRIDIR DA P E G Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDAGDGGPRDTEGG 338 >gi|343926767|ref|ZP_08766264.1| transcription elongation protein NusA [Gordonia alkanivorans NBRC 16433] gi|343763366|dbj|GAA13190.1| transcription elongation protein NusA [Gordonia alkanivorans NBRC 16433] Length=336 Score = 508 bits (1309), Expect = 4e-142, Method: Compositional matrix adjust. Identities = 244/326 (75%), Positives = 285/326 (88%), Gaps = 0/326 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+ AL IE D+GIS+ ++ I++ALLTAYRHT G AR++I+RK+G VRV+A+ Sbjct 1 MNIDIGALRMIEADKGISIETVITAIETALLTAYRHTDGFAPHARVDINRKSGAVRVMAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D+ G+++ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ +G+ EGEIV GV+Q Sbjct 61 ELDQNGDVVHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNFGDLVAHEGEIVGGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +DSRANARG+VVV+IG++ ++EGVIP AEQVPGE Y HG+R++CYVVGV+RG R P IT Sbjct 121 QDSRANARGMVVVQIGSDANSTEGVIPPAEQVPGEVYTHGDRIKCYVVGVSRGPRGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLFSLEVPEI DGSVEIVAVAREAGHRSKIAV + VAGLNAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAVHTGVAGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKIDIID+D DP FV NALSPAKVVSV+V+D+ A+AARVVVPD+QLS Sbjct 241 QRVRNVMSELAGEKIDIIDFDSDPGVFVGNALSPAKVVSVTVVDEAAKAARVVVPDYQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGD 326 LAIGKEGQNARLAARLTGWRIDIR D Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSD 326 >gi|257055490|ref|YP_003133322.1| transcription elongation factor NusA [Saccharomonospora viridis DSM 43017] gi|256585362|gb|ACU96495.1| transcription termination factor NusA [Saccharomonospora viridis DSM 43017] Length=348 Score = 504 bits (1297), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 250/334 (75%), Positives = 284/334 (86%), Gaps = 4/334 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL AIE D+ I +LE I+SALLTAY+HT+G Q ARI+IDRKTG VRVIA Sbjct 1 MNVDIAALRAIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRVIAY 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 DE G ++ EWDDTPEGFGRIAA TARQV+LQR RDAE+E+TYGEFS +EGEIVAGV+Q Sbjct 61 TLDENGEVVEEWDDTPEGFGRIAAATARQVILQRLRDAEHEKTYGEFSAQEGEIVAGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD++ANARG+V+V++G +EGV+P AEQVPGE YEHG RL+ YVVGV+R AR P IT Sbjct 121 RDAKANARGMVIVQVGD----TEGVLPPAEQVPGEVYEHGARLKAYVVGVSRTARGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPEIADG+VEI AVAREAGHRSKIAVRS V G+NAKGACIG +G Sbjct 177 LSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTVPGVNAKGACIGHVG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVRNVMSEL GEKIDIID+ DDPARFV NALSPAKVVSV V+D+ + ARV+VPDFQLS Sbjct 237 ARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDERTKTARVIVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ 334 LAIGKEGQNARLAARLTGWRIDIR DA P P Q Sbjct 297 LAIGKEGQNARLAARLTGWRIDIRSDAAPEPGEQ 330 >gi|258652414|ref|YP_003201570.1| transcription elongation factor NusA [Nakamurella multipartita DSM 44233] gi|258555639|gb|ACV78581.1| NusA antitermination factor [Nakamurella multipartita DSM 44233] Length=336 Score = 504 bits (1297), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 244/334 (74%), Positives = 284/334 (86%), Gaps = 0/334 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL A+E ++GI N L++T+++ALLTAYRHTQGH AR++IDRKTG +RV A+ Sbjct 1 MNVDIAALRAVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVWAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD++G ++ EWDDTPE FGRIAATTARQV+LQR RD +NERT+G+F+ RE +++ G I Sbjct 61 ETDDSGEIVREWDDTPEDFGRIAATTARQVILQRLRDVDNERTFGDFAGREHDLITGTIS 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 D++ NARG+VVV +G A EG+IPAAEQVPGESY HG RLRCYVV V RG R P IT Sbjct 121 ADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQRLRCYVVSVARGLRGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPEIADGSVEI AVAREAGHRSKIAVR VAG+NAKGACIGPMG Sbjct 181 LSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAVRPAVAGVNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVR VMSEL+GEKIDIIDYD+DPA FV NALSPA+ +S +VID A+AARVVVPDFQLS Sbjct 241 ARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTVIDPVAKAARVVVPDFQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ 334 LAIGKEGQNARLAARLTGWRIDIR DA P P G+ Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPDPAGE 334 >gi|296139427|ref|YP_003646670.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296027561|gb|ADG78331.1| NusA antitermination factor [Tsukamurella paurometabola DSM 20162] Length=333 Score = 497 bits (1279), Expect = 1e-138, Method: Compositional matrix adjust. Identities = 238/329 (73%), Positives = 286/329 (87%), Gaps = 0/329 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMA L AIE ++ ISV ++E I+ ALLTAY+HT+GH+ ARI+++R+TG V+V+A+ Sbjct 1 MNIDMATLRAIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVLAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D GN+I+EWDDTPEGFGRIAA +ARQ++ QR RDAEN+RT+GEF+ EGE+V+GV+Q Sbjct 61 ELDADGNIITEWDDTPEGFGRIAADSARQLITQRLRDAENDRTFGEFAVYEGEVVSGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 D+RA ARG VVVRIG+E + EG++P AEQVPGE+YEHG+R++ YVVGV+RG R IT Sbjct 121 ADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDRMKFYVVGVSRGQRGTQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLV+KLF+LEVPEIADGSVEI +VAREAGHRSKIAVR++V GLNAKGACIGPMG Sbjct 181 LSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAVRTSVPGLNAKGACIGPMG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMS+L GEKIDII YDDDPA FV NALSP+ VVSV+++D +AARVVVPDF+LS Sbjct 241 QRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTIVDPKEKAARVVVPDFKLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR DA P Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSDADP 329 >gi|256379832|ref|YP_003103492.1| transcription elongation factor NusA [Actinosynnema mirum DSM 43827] gi|255924135|gb|ACU39646.1| NusA antitermination factor [Actinosynnema mirum DSM 43827] Length=337 Score = 496 bits (1277), Expect = 2e-138, Method: Compositional matrix adjust. Identities = 242/327 (75%), Positives = 284/327 (87%), Gaps = 4/327 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL AIE D+ I + +LE I++ALLTAY+HT GH +R+EIDRK+G VRV+A+ Sbjct 1 MNVDIAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVLAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 + G + EWDDTPEGFGRIAATTARQV+LQR RDAE+ERT+GEFS +EGEI+ GV+Q Sbjct 61 DLGPDGVVTEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSAKEGEIIGGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARG+VVV++G +EGV+P AEQVPGE Y+HG R++CYVVGV+R AR P IT Sbjct 121 RDARANARGMVVVQVGD----TEGVLPPAEQVPGEEYKHGARIKCYVVGVSRSARGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVR+LF+LEVPEIADG+VEI AVAREAGHRSKIAVR++V G+NAKGACIGPMG Sbjct 177 LSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSVPGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVRNVMSEL+GEKIDIID+ DDPA FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS Sbjct 237 ARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDERAKTARVVVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDA 327 LAIGKEGQNARLAARLTGWRIDIR DA Sbjct 297 LAIGKEGQNARLAARLTGWRIDIRSDA 323 >gi|340529770|gb|AEK44975.1| transcription elongation factor NusA [Amycolatopsis mediterranei S699] Length=348 Score = 494 bits (1273), Expect = 6e-138, Method: Compositional matrix adjust. Identities = 242/329 (74%), Positives = 285/329 (87%), Gaps = 4/329 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL AIE D+ I ++E I++ALLTAY+HT+GHQ+ ARI+IDRKTG+VRV+A Sbjct 1 MNVDIAALRAIERDKDIPFETVIEAIETALLTAYKHTEGHQSHARIDIDRKTGLVRVLAH 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 G + EWDDTPEGFGRIAATTARQV+LQR RDAE+E+T+GEFST+EGEIVAGVIQ Sbjct 61 TLTHDGQVDEEWDDTPEGFGRIAATTARQVILQRLRDAEHEKTFGEFSTKEGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARG+VVV++G +EGV+P+ EQV GESYEHG+R++ YVV V+R R P IT Sbjct 121 RDARANARGMVVVQVGD----TEGVLPSGEQVAGESYEHGSRIKAYVVTVSRSNRGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HPNLVRKLF+LEVPEIADG+VEI AVARE GHR+KIAV+S V G+NAKGACIGP+G Sbjct 177 LSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRTKIAVKSTVPGVNAKGACIGPVG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVRNVMSEL+GEKIDIID+ +DPARFV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS Sbjct 237 ARVRNVMSELAGEKIDIIDFSEDPARFVGNALSPAKVVSVRVVDERAKTARVVVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR DA P Sbjct 297 LAIGKEGQNARLAARLTGWRIDIRSDAAP 325 >gi|300788185|ref|YP_003768476.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] gi|299797699|gb|ADJ48074.1| transcription elongation factor NusA [Amycolatopsis mediterranei U32] Length=348 Score = 494 bits (1273), Expect = 6e-138, Method: Compositional matrix adjust. Identities = 242/329 (74%), Positives = 285/329 (87%), Gaps = 4/329 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL AIE D+ I ++E I++ALLTAY+HT+GHQ+ ARI+IDRKTG+VRV+A Sbjct 1 MNVDIAALRAIERDKDIPFETVIEAIETALLTAYKHTEGHQSHARIDIDRKTGLVRVLAH 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 G + EWDDTPEGFGRIAATTARQV+LQR RDAE+E+T+GEFST+EGEIVAGVIQ Sbjct 61 TLTHDGQVDEEWDDTPEGFGRIAATTARQVILQRLRDAEHEKTFGEFSTKEGEIVAGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RANARG+VVV++G +EGV+P+ EQV GESYEHG+R++ YVV V+R R P IT Sbjct 121 RDARANARGMVVVQVGD----TEGVLPSGEQVAGESYEHGSRIKAYVVTVSRSNRGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HPNLVRKLF+LEVPEIADG+VEI AVARE GHR+KIAV+S V G+NAKGACIGP+G Sbjct 177 LSRSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRTKIAVKSTVPGVNAKGACIGPVG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVRNVMSEL+GEKIDIID+ +DPARFV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS Sbjct 237 ARVRNVMSELAGEKIDIIDFSEDPARFVGNALSPAKVVSVRVVDERAKTARVVVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR DA P Sbjct 297 LAIGKEGQNARLAARLTGWRIDIRSDAAP 325 >gi|302528542|ref|ZP_07280884.1| transcription termination factor NusA [Streptomyces sp. AA4] gi|302437437|gb|EFL09253.1| transcription termination factor NusA [Streptomyces sp. AA4] Length=350 Score = 494 bits (1271), Expect = 1e-137, Method: Compositional matrix adjust. Identities = 242/336 (73%), Positives = 283/336 (85%), Gaps = 4/336 (1%) Query 3 IDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIARET 62 +D+AAL AIE D+ I + ++E I++ALLTAY+HT+GHQ ARI+IDRKTG+VRV+A Sbjct 1 MDIAALRAIERDKDIPFDTVIEAIETALLTAYKHTEGHQPHARIDIDRKTGLVRVLAHTL 60 Query 63 DEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRD 122 G + EWDDTPEGFGRIAATTARQV+LQR RDAE+E+TYGEFS +EGEIVAGV+QRD Sbjct 61 TSEGEVDEEWDDTPEGFGRIAATTARQVILQRLRDAEHEKTYGEFSAKEGEIVAGVVQRD 120 Query 123 SRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLS 182 +RANARG+VV+++G +EGV+P AEQV GESYEHG R++ +V GV+R R P I LS Sbjct 121 ARANARGMVVIQVGD----TEGVLPQAEQVAGESYEHGTRIKAFVFGVSRSNRGPQIMLS 176 Query 183 RTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQR 242 R+HPNLVRKLF+LEVPEIADG+VEI AVARE GHRSKIAVRS + G+NAKGACIGPMG R Sbjct 177 RSHPNLVRKLFALEVPEIADGTVEIAAVAREPGHRSKIAVRSTIPGVNAKGACIGPMGAR 236 Query 243 VRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLA 302 VRNVMSEL+GEKIDIID+ DDPA+FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLSLA Sbjct 237 VRNVMSELAGEKIDIIDWSDDPAKFVGNALSPAKVVSVRVVDERAKTARVVVPDFQLSLA 296 Query 303 IGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPG 338 IGKEGQNARLAARLTGWRIDIR DA P P P G Sbjct 297 IGKEGQNARLAARLTGWRIDIRSDAAPAEPAGPGEG 332 >gi|331698436|ref|YP_004334675.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326953125|gb|AEA26822.1| NusA antitermination factor [Pseudonocardia dioxanivorans CB1190] Length=348 Score = 487 bits (1254), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 239/329 (73%), Positives = 279/329 (85%), Gaps = 2/329 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+AAL AIE D+ I + +LE I++ALLTAY+HT GH+ ARI+IDRKTG+VRV+A+ Sbjct 1 MNVDIAALRAIERDKDIPFDMVLEAIETALLTAYKHTDGHEPHARIDIDRKTGLVRVLAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E + G + EWDDTPEGFGR+AATTARQV++QR RDAE+ERT+GEFS +EGEI+ G +Q Sbjct 61 ELGDDGQVAREWDDTPEGFGRVAATTARQVIVQRLRDAEHERTFGEFSAKEGEIITGEVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 DSRANARG+VVV + +EGV+P EQVPGE Y+HG+RLRCYV+GV+RG R IT Sbjct 121 ADSRANARGVVVVSL--SGSQAEGVLPQTEQVPGERYQHGDRLRCYVLGVSRGPRGTQIT 178 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPE+ DGSVEIVAVAREAGHR+KIAVRS V G+N KGACIGPMG Sbjct 179 LSRTHPNLVRKLFALEVPELVDGSVEIVAVAREAGHRTKIAVRSTVPGVNPKGACIGPMG 238 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVR VMSEL+GEKIDIID+ DDPA FV NALSP+KVVSV+VID R ARVVVPDFQLS Sbjct 239 ARVRGVMSELAGEKIDIIDWSDDPATFVGNALSPSKVVSVTVIDAKTRTARVVVPDFQLS 298 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR D+ P Sbjct 299 LAIGKEGQNARLAARLTGWRIDIRSDSDP 327 >gi|82407871|pdb|2ASB|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407889|pdb|2ATW|A Chain A, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex gi|82407891|pdb|2ATW|C Chain C, Structure Of A Mycobacterium Tuberculosis Nusa-Rna Complex Length=251 Score = 486 bits (1252), Expect = 2e-135, Method: Compositional matrix adjust. Identities = 243/243 (100%), Positives = 243/243 (100%), Gaps = 0/243 (0%) Query 105 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLR 164 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLR Sbjct 1 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLR 60 Query 165 CYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRS 224 CYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRS Sbjct 61 CYVVGVTRGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRS 120 Query 225 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVID 284 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVID Sbjct 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVID 180 Query 285 QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMA 344 QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMA Sbjct 181 QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMA 240 Query 345 HDR 347 HDR Sbjct 241 HDR 243 >gi|325000941|ref|ZP_08122053.1| transcription elongation factor NusA [Pseudonocardia sp. P1] Length=344 Score = 485 bits (1249), Expect = 4e-135, Method: Compositional matrix adjust. Identities = 243/339 (72%), Positives = 286/339 (85%), Gaps = 6/339 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MN+D+ AL AIE D+ I +LE I++ALLTAYRHT+GH +DAR++IDRKTGVVRV+AR Sbjct 1 MNVDIPALRAIERDKEIPFETVLEAIETALLTAYRHTEGHHSDARVDIDRKTGVVRVLAR 60 Query 61 ETDEA---GNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAG 117 + +A G E+DDTPEGFGRIAATTARQV++QR RDAE+ERTYGEFST+EGE+VAG Sbjct 61 DASDAAEDGTPGPEFDDTPEGFGRIAATTARQVIVQRLRDAEHERTYGEFSTKEGEVVAG 120 Query 118 VIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREP 177 ++QRD+RANARG+V+V +G T+A V+PAAEQVPGE Y+HG R+RCYV+GV RG R Sbjct 121 IVQRDARANARGVVIVELGGGTEA---VLPAAEQVPGEVYQHGERIRCYVIGVARGPRGT 177 Query 178 LITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIG 237 ITLSRTHPNLVRKLF+LEVPE+ DGS+EIV+VAREAG RSKIAVRS GLNAKGACIG Sbjct 178 TITLSRTHPNLVRKLFALEVPELVDGSIEIVSVAREAGFRSKIAVRSARPGLNAKGACIG 237 Query 238 PMGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDF 297 PMG RVR VM EL+GEKIDIID+ +DP FV NALSP+KVVSV+V+D+ AR ARVVVPDF Sbjct 238 PMGARVRGVMGELAGEKIDIIDWSEDPGEFVGNALSPSKVVSVTVLDERARIARVVVPDF 297 Query 298 QLSLAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPE 336 QLSLAIGKEGQNARLAARLTGW+IDIR DA P P P+ Sbjct 298 QLSLAIGKEGQNARLAARLTGWKIDIRSDADPRDPVGPD 336 >gi|317508529|ref|ZP_07966195.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] gi|316253173|gb|EFV12577.1| transcription termination factor NusA [Segniliparus rugosus ATCC BAA-974] Length=342 Score = 462 bits (1188), Expect = 5e-128, Method: Compositional matrix adjust. Identities = 222/329 (68%), Positives = 270/329 (83%), Gaps = 0/329 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 M+ID+ L AIE ++G+S ++++ I SALLTAY+HT GH DAR++IDRK G V+V+ Sbjct 1 MHIDVQTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHHADARVDIDRKHGAVKVLVA 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E DE GN++ E+DDTP FGRIA TARQV+LQR RDAE ++ + + +EGEIVAGV+Q Sbjct 61 ERDEDGNILGEYDDTPADFGRIATMTARQVILQRLRDAEGDQGFADLPVKEGEIVAGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RAN RGL +V++G+E K+ EGV+P AEQVPGES HG+R++CYVV V G R P IT Sbjct 121 RDARANERGLQIVKLGSELKSYEGVLPVAEQVPGESLVHGDRVKCYVVSVKAGRRGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPEI +GSV+IVAVAREAGHRSKIAV+S V GLNAKGACIG G Sbjct 181 LSRTHPNLVRKLFALEVPEIGEGSVQIVAVAREAGHRSKIAVKSTVPGLNAKGACIGQNG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKID+ID+D+DPA FV NALSPA+ ++ V+D A+A RVVVPD QLS Sbjct 241 QRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALATRVLDPVAKAVRVVVPDSQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPP 329 LAIGKEGQNARLAARLTGWRIDIR + P Sbjct 301 LAIGKEGQNARLAARLTGWRIDIRSEQDP 329 >gi|296394257|ref|YP_003659141.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] gi|296181404|gb|ADG98310.1| transcription termination factor NusA [Segniliparus rotundus DSM 44985] Length=342 Score = 453 bits (1166), Expect = 2e-125, Method: Compositional matrix adjust. Identities = 229/347 (66%), Positives = 278/347 (81%), Gaps = 8/347 (2%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 M+ID+ L AIE ++G+S ++++ I SALLTAY+HT GHQ+DAR++IDRK G VRV+ Sbjct 1 MHIDVQTLRAIEAEKGLSSEKIIDAIASALLTAYKHTDGHQSDARVDIDRKHGAVRVLVA 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E DE GNL+ E+DDTP+ FGRIA TARQV+LQR RDAE ++ + + +EG+IVAGV+Q Sbjct 61 ERDEDGNLLGEYDDTPDDFGRIATMTARQVILQRLRDAEGDQGFADLPVKEGDIVAGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 RD+RAN RGL +VR+G+E K+ EGV+P AEQVPGES HG+R++CYVV V G R P IT Sbjct 121 RDARANERGLQIVRMGSELKSYEGVLPVAEQVPGESLVHGDRVKCYVVSVKPGRRGPQIT 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLVRKLF+LEVPEI DG+V+IVAVAREAGHRSKIAV+S V GLNAKGACIG G Sbjct 181 LSRTHPNLVRKLFALEVPEIGDGAVQIVAVAREAGHRSKIAVKSTVPGLNAKGACIGQNG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVRNVMSEL+GEKID+ID+D+DPA FV NALSPA+ + V+D +A RVVVPD QLS Sbjct 241 QRVRNVMSELAGEKIDLIDFDEDPATFVGNALSPARALLTRVLDPVVKAVRVVVPDSQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHDR 347 LAIGKEGQNARLAARLTGWRIDIR + +P V+R A DR Sbjct 301 LAIGKEGQNARLAARLTGWRIDIR--------SEQDPEVARKAAADR 339 >gi|319951028|ref|ZP_08024892.1| transcription elongation factor NusA [Dietzia cinnamea P4] gi|319435308|gb|EFV90564.1| transcription elongation factor NusA [Dietzia cinnamea P4] Length=328 Score = 446 bits (1147), Expect = 3e-123, Method: Compositional matrix adjust. Identities = 220/327 (68%), Positives = 265/327 (82%), Gaps = 0/327 (0%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAAL+ + ++R I +++L++T+++ALLTAY+ T G ARI +DRK G V V+A Sbjct 1 MNIDMAALNMLSLEREIPLDDLVQTLENALLTAYKRTDGAHRVARIALDRKAGTVAVLAA 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E DE GN I E+D TP FGR+AA TARQ++LQR R+AE +R YG+ TREGE+V+GVIQ Sbjct 61 EVDEDGNRIGEFDVTPSDFGRVAAATARQIILQRLREAETDRIYGDLVTREGEVVSGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 DSRANARG+VVV IG E +EG I AEQVPGESY HG+R++C+VVGV +G ++ Sbjct 121 SDSRANARGIVVVHIGPENGGTEGTIAPAEQVPGESYRHGDRIKCHVVGVHKGPHGASVS 180 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHP+LVR LF+LEVPEI DGSV I A+AREAGHR+KIAV S V+GLNAKGACIGP G Sbjct 181 LSRTHPDLVRGLFALEVPEIGDGSVRIAAIAREAGHRTKIAVESTVSGLNAKGACIGPNG 240 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 RVR VM+EL+GEKIDI+DYDDDP FV NALSPAKV+SV+V D+ ARAARVVVPD+QLS Sbjct 241 ARVRAVMAELNGEKIDIVDYDDDPTVFVGNALSPAKVISVTVADEQARAARVVVPDYQLS 300 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDA 327 LAIGKEGQNARLA RLT WRIDI DA Sbjct 301 LAIGKEGQNARLAHRLTQWRIDIHSDA 327 >gi|159036964|ref|YP_001536217.1| transcription elongation factor NusA [Salinispora arenicola CNS-205] gi|157915799|gb|ABV97226.1| NusA antitermination factor [Salinispora arenicola CNS-205] Length=347 Score = 432 bits (1112), Expect = 3e-119, Method: Compositional matrix adjust. Identities = 218/345 (64%), Positives = 261/345 (76%), Gaps = 11/345 (3%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL A+E +R I + +L I++ALLTAYRHT+G Q AR+EIDRKTGV V A+ Sbjct 1 MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGVALVYAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D G ++ EWDDTP FGRIAA TA+QV+LQR R+A +E +GE+ R+G++V GV+Q Sbjct 61 EMDADGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +G+V V +G EGV+P +EQVPGE Y HG R+RC VV V +G R P +T Sbjct 121 AHEARAEKGIVSVDLGK----LEGVLPQSEQVPGEQYAHGERVRCVVVHVAKGVRGPQVT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS AG+NAKGACIGPMG Sbjct 177 LSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVR VMSEL GEKIDIID+ +DPA FV NALSPAK + V V+D +R ARV VPDFQLS Sbjct 237 QRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLASRTARVTVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ-------PEPG 338 LAIG+EGQNARLAARLTGWRIDIR D P P PEPG Sbjct 297 LAIGREGQNARLAARLTGWRIDIRSDVEPARPAGGADGDHVPEPG 341 >gi|330466360|ref|YP_004404103.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] gi|328809331|gb|AEB43503.1| transcription elongation factor NusA [Verrucosispora maris AB-18-032] Length=347 Score = 432 bits (1111), Expect = 4e-119, Method: Compositional matrix adjust. Identities = 215/327 (66%), Positives = 256/327 (79%), Gaps = 4/327 (1%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL A+E +R I + +L I++ALLTAYRHT+G Q+ AR+EIDRK+G V A+ Sbjct 1 MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQSHARVEIDRKSGAALVYAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D G ++ EWDDTP FGRIAA TA+QV+LQR R+A +E +GE+ R+G++V GV+Q Sbjct 61 EMDPEGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +G+V V +G EGV+P +EQVPGE Y HG R+RC VV V +G R P IT Sbjct 121 AHEARAEKGIVTVDLGK----LEGVLPQSEQVPGERYTHGERIRCVVVHVAKGMRGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSRTHPNLV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS G+NAKGACIGPMG Sbjct 177 LSRTHPNLVKKLFALEVPEIADGTVEISAIAREAGHRTKIAVRSTTPGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVR VMSEL GEKIDIID+ DDPA FV NALSPAK + V V+D RAARV VPDFQLS Sbjct 237 QRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLANRAARVTVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDA 327 LAIG+EGQNARLAARLTGWRIDIR DA Sbjct 297 LAIGREGQNARLAARLTGWRIDIRSDA 323 >gi|117928724|ref|YP_873275.1| transcription elongation factor NusA [Acidothermus cellulolyticus 11B] gi|117649187|gb|ABK53289.1| NusA antitermination factor [Acidothermus cellulolyticus 11B] Length=348 Score = 431 bits (1107), Expect = 1e-118, Method: Compositional matrix adjust. Identities = 218/328 (67%), Positives = 263/328 (81%), Gaps = 11/328 (3%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNIDMAAL ++E ++ IS + L++ I++ALLTAY+ T+G AR+ +DRKTG V V+A Sbjct 1 MNIDMAALRSLEREKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTVLAA 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 ETD GN+I E+D TP+ F RIAA TA+QV+LQR RDAE+E T+GE++ REG++V G+IQ Sbjct 61 ETDAEGNVIREFDHTPQDFNRIAAMTAKQVILQRLRDAEHELTFGEYAGREGDVVGGIIQ 120 Query 121 R--DSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPL 178 + DSR V V +G EGV+P EQVPGE Y HG R+RCYV+ V +G R P Sbjct 121 QQHDSRN-----VYVNLGK----VEGVLPVTEQVPGERYVHGERIRCYVLSVHKGIRGPQ 171 Query 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGP 238 ITLSRTHP LVRKLF+LEVPEIADGSVEIVA+AREAGHR+KIAVRS V GLNAKGACIGP Sbjct 172 ITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGLNAKGACIGP 231 Query 239 MGQRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298 +GQRVR VM+EL GEKIDIIDY DDPA FVANALSPA+V SV ++D ++ARV+VPD+Q Sbjct 232 LGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKSARVIVPDYQ 291 Query 299 LSLAIGKEGQNARLAARLTGWRIDIRGD 326 LSLAIG+EGQNARLAARLTGWRIDIR D Sbjct 292 LSLAIGREGQNARLAARLTGWRIDIRPD 319 >gi|145593916|ref|YP_001158213.1| transcription elongation factor NusA [Salinispora tropica CNB-440] gi|145303253|gb|ABP53835.1| transcription termination factor NusA [Salinispora tropica CNB-440] Length=347 Score = 429 bits (1103), Expect = 3e-118, Method: Compositional matrix adjust. Identities = 216/345 (63%), Positives = 260/345 (76%), Gaps = 11/345 (3%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL A+E +R I + +L I++ALLTAYRHT+G Q AR+EIDRKTG V A+ Sbjct 1 MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVFAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E + G ++ EWDDTP FGRIAA TA+QV+LQR R+A +E +GE+ R+G++V GV+Q Sbjct 61 EVEPDGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +G+V V +G EGV+P +EQVPGE Y HG R+RC VV V +G R P +T Sbjct 121 AHEARAEKGIVSVDLGK----LEGVLPQSEQVPGEQYAHGERVRCVVVHVAKGVRGPQVT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS AG+NAKGACIGPMG Sbjct 177 LSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVR VM EL GEKIDIID+ +DPA FV NALSPAK + V V+D +R ARV VPDFQLS Sbjct 237 QRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLASRTARVTVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ-------PEPG 338 LAIG+EGQNARLAARLTGWRIDIR DA P P PEPG Sbjct 297 LAIGREGQNARLAARLTGWRIDIRSDAEPARPAGNAEADHVPEPG 341 >gi|315502523|ref|YP_004081410.1| nusa antitermination factor [Micromonospora sp. L5] gi|315409142|gb|ADU07259.1| NusA antitermination factor [Micromonospora sp. L5] Length=347 Score = 429 bits (1102), Expect = 5e-118, Method: Compositional matrix adjust. Identities = 217/345 (63%), Positives = 259/345 (76%), Gaps = 11/345 (3%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL A+E +R I + +L I++ALLTAYRHT G + AR+EIDRK+G V A+ Sbjct 1 MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVYAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D G + EWDDTP FGRIAA TA+QV+LQR R+A +E +GE+ R+G++V GV+Q Sbjct 61 ELDADGTVTREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +G+V V +G EGV+P +EQVPGE YEHG R+RC VV V +G R P IT Sbjct 121 AHETRREKGIVSVDLGK----LEGVLPQSEQVPGERYEHGERIRCVVVHVAKGMRGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS +G+NAKGACIGPMG Sbjct 177 LSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTTSGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVR VMSEL GEKIDIID+ DDPA FV NALSPAK + V V+D +R ARV VPDFQLS Sbjct 237 QRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLASRTARVTVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ-------PEPG 338 LAIG+EGQNARLAARLTGWRIDIR DA P PEPG Sbjct 297 LAIGREGQNARLAARLTGWRIDIRSDAETAAPQSRGGADHVPEPG 341 >gi|302865966|ref|YP_003834603.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] gi|302568825|gb|ADL45027.1| transcription termination factor NusA [Micromonospora aurantiaca ATCC 27029] Length=347 Score = 429 bits (1102), Expect = 5e-118, Method: Compositional matrix adjust. Identities = 217/345 (63%), Positives = 259/345 (76%), Gaps = 11/345 (3%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 MNID+AAL A+E +R I + +L I++ALLTAYRHT G + AR+EIDRK+G V A+ Sbjct 1 MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTDGAEPHARVEIDRKSGAASVYAQ 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D G + EWDDTP FGRIAA TA+QV+LQR R+A +E +GE+ R+G++V GV+Q Sbjct 61 ELDADGTVTREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 +G+V V +G EGV+P +EQVPGE YEHG R+RC VV V +G R P IT Sbjct 121 AHETRREKGIVSVDLGK----LEGVLPQSEQVPGERYEHGERIRCVVVHVAKGMRGPQIT 176 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS +G+NAKGACIGPMG Sbjct 177 LSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSTTSGVNAKGACIGPMG 236 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVR VMSEL GEKIDIID+ DDPA FV NALSPAK + V V+D +R ARV VPDFQLS Sbjct 237 QRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLASRTARVTVPDFQLS 296 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQ-------PEPG 338 LAIG+EGQNARLAARLTGWRIDIR DA P PEPG Sbjct 297 LAIGREGQNARLAARLTGWRIDIRSDAETAAPQSRGGADHVPEPG 341 >gi|326333613|ref|ZP_08199851.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] gi|325948594|gb|EGD40696.1| transcription termination factor NusA [Nocardioidaceae bacterium Broad-1] Length=325 Score = 427 bits (1098), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 211/330 (64%), Positives = 264/330 (80%), Gaps = 7/330 (2%) Query 1 MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60 M+IDM+ L +E +R IS++ L+E I+ LLTAY T+G QT AR+++DRKTG VRV+A Sbjct 1 MDIDMSILRMLEREREISLDVLVEAIEQGLLTAYHKTEGAQTKARVDLDRKTGHVRVLAS 60 Query 61 ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120 E D+ GN++ E+DDTPEGFGRIAATTA+Q++LQR RDAE++ +GEFS +EG+I++GVIQ Sbjct 61 EVDDEGNVVGEYDDTPEGFGRIAATTAKQIVLQRLRDAEDDVKFGEFSGKEGDILSGVIQ 120 Query 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180 + + V+V +G EGVIP +E+VPGE Y HG R++ VV V +G R P IT Sbjct 121 QGRNPDD---VLVDLGR----LEGVIPLSERVPGEDYGHGTRIKALVVSVRKGMRGPQIT 173 Query 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240 LSR+HPNLV+KLFS EVPEIADG+VEI A+AREAGHR+KIAV+S V G+NAKGACIGPMG Sbjct 174 LSRSHPNLVKKLFSFEVPEIADGTVEIAAIAREAGHRTKIAVKSTVPGVNAKGACIGPMG 233 Query 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300 QRVR VMSEL GEKIDI+D+ +DP VA+ALSPA+V SV +ID+ ++ARVVVPD+QLS Sbjct 234 QRVRQVMSELQGEKIDIVDWSEDPKVLVASALSPARVSSVEIIDEATKSARVVVPDYQLS 293 Query 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPP 330 LAIGKEGQNARLAARLTGWRIDIR D P Sbjct 294 LAIGKEGQNARLAARLTGWRIDIRSDEETP 323 Lambda K H 0.317 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 639159047676 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40