BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2842c
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609979|ref|NP_217358.1| hypothetical protein Rv2842c [Mycob... 354 3e-96
gi|339632851|ref|YP_004724493.1| hypothetical protein MAF_28470 ... 353 8e-96
gi|306968906|ref|ZP_07481567.1| hypothetical protein TMIG_02342 ... 351 3e-95
gi|240172758|ref|ZP_04751417.1| hypothetical protein MkanA1_2581... 267 5e-70
gi|183981904|ref|YP_001850195.1| hypothetical protein MMAR_1891 ... 248 2e-64
gi|296171599|ref|ZP_06852839.1| conserved hypothetical protein [... 247 6e-64
gi|118617679|ref|YP_906011.1| hypothetical protein MUL_2119 [Myc... 246 2e-63
gi|342858326|ref|ZP_08714981.1| ribosome maturation protein RimP... 219 9e-56
gi|254821856|ref|ZP_05226857.1| hypothetical protein MintA_18122... 214 4e-54
gi|118464499|ref|YP_882873.1| hypothetical protein MAV_3696 [Myc... 212 2e-53
gi|41409008|ref|NP_961844.1| hypothetical protein MAP2910c [Myco... 212 2e-53
gi|120403302|ref|YP_953131.1| hypothetical protein Mvan_2311 [My... 206 1e-51
gi|108799046|ref|YP_639243.1| hypothetical protein Mmcs_2079 [My... 204 4e-51
gi|145224622|ref|YP_001135300.1| hypothetical protein Mflv_4042 ... 200 8e-50
gi|118473512|ref|YP_886961.1| hypothetical protein MSMEG_2624 [M... 196 1e-48
gi|333991206|ref|YP_004523820.1| hypothetical protein JDM601_256... 188 2e-46
gi|169630218|ref|YP_001703867.1| hypothetical protein MAB_3136c ... 145 2e-33
gi|226306116|ref|YP_002766076.1| hypothetical protein RER_26290 ... 133 1e-29
gi|229491457|ref|ZP_04385281.1| conserved hypothetical protein [... 131 4e-29
gi|34223166|sp|Q9Z5J2.2|RIMP_MYCLE RecName: Full=Putative riboso... 127 5e-28
gi|226366089|ref|YP_002783872.1| hypothetical protein ROP_66800 ... 124 7e-27
gi|325676663|ref|ZP_08156338.1| hypothetical protein HMPREF0724_... 122 2e-26
gi|312139327|ref|YP_004006663.1| hypothetical protein REQ_19140 ... 115 3e-24
gi|333919288|ref|YP_004492869.1| ribosome maturation factor rimP... 110 1e-22
gi|54026040|ref|YP_120282.1| hypothetical protein nfa40690 [Noca... 107 7e-22
gi|343926766|ref|ZP_08766263.1| ribosome maturation factor RimP ... 105 3e-21
gi|111023600|ref|YP_706572.1| hypothetical protein RHA1_ro06641 ... 103 1e-20
gi|331698437|ref|YP_004334676.1| ribosome maturation factor rimP... 100 1e-19
gi|262202084|ref|YP_003273292.1| hypothetical protein Gbro_2150 ... 98.6 4e-19
gi|257055489|ref|YP_003133321.1| hypothetical protein Svir_14540... 95.9 2e-18
gi|255325208|ref|ZP_05366314.1| conserved hypothetical protein [... 92.0 4e-17
gi|300788186|ref|YP_003768477.1| hypothetical protein AMED_6341 ... 88.6 3e-16
gi|134102375|ref|YP_001108036.1| hypothetical protein SACE_5928 ... 88.2 4e-16
gi|4455675|emb|CAB36567.1| hypothetical protein MLCB596.11 [Myco... 87.8 6e-16
gi|296269041|ref|YP_003651673.1| hypothetical protein Tbis_1058 ... 86.7 1e-15
gi|213964632|ref|ZP_03392832.1| conserved hypothetical protein [... 86.7 2e-15
gi|227503406|ref|ZP_03933455.1| conserved hypothetical protein [... 84.7 5e-15
gi|315502522|ref|YP_004081409.1| hypothetical protein ML5_1726 [... 84.3 7e-15
gi|302865965|ref|YP_003834602.1| hypothetical protein Micau_1466... 84.3 7e-15
gi|227504823|ref|ZP_03934872.1| conserved hypothetical protein [... 84.0 9e-15
gi|326382938|ref|ZP_08204628.1| ribosome maturation protein RimP... 83.6 1e-14
gi|336179469|ref|YP_004584844.1| ribosome maturation factor rimP... 82.8 2e-14
gi|306836352|ref|ZP_07469330.1| conserved hypothetical protein [... 82.8 2e-14
gi|319951027|ref|ZP_08024891.1| ribosome maturation protein RimP... 82.8 2e-14
gi|145593915|ref|YP_001158212.1| hypothetical protein Strop_1367... 82.4 3e-14
gi|297562527|ref|YP_003681501.1| hypothetical protein Ndas_3595 ... 82.4 3e-14
gi|159036963|ref|YP_001536216.1| hypothetical protein Sare_1324 ... 82.0 3e-14
gi|337290998|ref|YP_004630019.1| hypothetical protein CULC22_013... 81.3 5e-14
gi|312194981|ref|YP_004015042.1| hypothetical protein FraEuI1c_1... 80.9 7e-14
gi|21224052|ref|NP_629831.1| hypothetical protein SCO5703 [Strep... 80.9 7e-14
>gi|15609979|ref|NP_217358.1| hypothetical protein Rv2842c [Mycobacterium tuberculosis H37Rv]
gi|15842383|ref|NP_337420.1| hypothetical protein MT2908 [Mycobacterium tuberculosis CDC1551]
gi|31794019|ref|NP_856512.1| hypothetical protein Mb2867c [Mycobacterium bovis AF2122/97]
81 more sequence titles
Length=183
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/183 (99%), Positives = 183/183 (100%), Gaps = 0/183 (0%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR
Sbjct 1 MTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV
Sbjct 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE
Sbjct 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
Query 181 AGA 183
AGA
Sbjct 181 AGA 183
>gi|339632851|ref|YP_004724493.1| hypothetical protein MAF_28470 [Mycobacterium africanum GM041182]
gi|339332207|emb|CCC27917.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=183
Score = 353 bits (905), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 181/183 (99%), Positives = 182/183 (99%), Gaps = 0/183 (0%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR
Sbjct 1 MTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFR ARGRKVELVLSDGSRLTGRV
Sbjct 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRHARGRKVELVLSDGSRLTGRV 120
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE
Sbjct 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
Query 181 AGA 183
AGA
Sbjct 181 AGA 183
>gi|306968906|ref|ZP_07481567.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009]
gi|308353519|gb|EFP42370.1| hypothetical protein TMIG_02342 [Mycobacterium tuberculosis SUMu009]
Length=183
Score = 351 bits (900), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 181/183 (99%), Positives = 182/183 (99%), Gaps = 0/183 (0%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR
Sbjct 1 MTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV
Sbjct 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFS PAPAELELAQSSEMGLARGTE
Sbjct 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSLPAPAELELAQSSEMGLARGTE 180
Query 181 AGA 183
AGA
Sbjct 181 AGA 183
>gi|240172758|ref|ZP_04751417.1| hypothetical protein MkanA1_25812 [Mycobacterium kansasii ATCC
12478]
Length=177
Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/181 (77%), Positives = 154/181 (86%), Gaps = 6/181 (3%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG FACAGYEIEDVVID RA PPRI V+ADGD LDLDTIAALSR
Sbjct 1 MTTGLPSQTQVIELLGGAFACAGYEIEDVVIDTRAHPPRITVVADGDTALDLDTIAALSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASALLDGLD IR +Y+LEVSSPGVERPLTSEKHFRRARGRK+EL L+DGSRLTGRV
Sbjct 61 SASALLDGLDA---IRDKYVLEVSSPGVERPLTSEKHFRRARGRKIELTLADGSRLTGRV 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
GE+ T+ALVIR+ R WAVR+IPLA+++KAVVQVEFSPPA AELELA ++ A GTE
Sbjct 118 GELTGDTLALVIRQGRNWAVRQIPLAQVLKAVVQVEFSPPARAELELATAAG---ATGTE 174
Query 181 A 181
A
Sbjct 175 A 175
>gi|183981904|ref|YP_001850195.1| hypothetical protein MMAR_1891 [Mycobacterium marinum M]
gi|226696166|sp|B2HKR9.1|RIMP_MYCMM RecName: Full=Ribosome maturation factor rimP
gi|183175230|gb|ACC40340.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=177
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/183 (72%), Positives = 149/183 (82%), Gaps = 6/183 (3%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG +FA AGYEIEDVVID RARPPRI V+ADGD LDLDTIA LSR
Sbjct 1 MTTGLPSQTQVIELLGGEFARAGYEIEDVVIDHRARPPRITVVADGDTTLDLDTIAVLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
AS+LLD LD I Y+LEVSSPG++RPLTSEKHFRRARGRKVEL L+DGS+LTGR+
Sbjct 61 SASSLLDSLD---NIGDSYVLEVSSPGIDRPLTSEKHFRRARGRKVELTLADGSQLTGRI 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
G +++G++ LV+R R W VREIPLAE+ KAVVQVEFSPP PAELELA + G A GTE
Sbjct 118 GALQSGSLDLVVRAGREWKVREIPLAEVEKAVVQVEFSPPNPAELELATT---GRAAGTE 174
Query 181 AGA 183
A
Sbjct 175 VEA 177
>gi|296171599|ref|ZP_06852839.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894054|gb|EFG73816.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=175
Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 132/168 (79%), Positives = 143/168 (86%), Gaps = 3/168 (1%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG +FA AGYEIEDVVIDARARPPRI VIADGD LDLDTIA LSR
Sbjct 1 MTTGLPSQTQVIELLGGEFARAGYEIEDVVIDARARPPRIMVIADGDKALDLDTIATLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASALLDGLD + RY+LEVSSPGV+RPLTSEKHFRRARGRKV++VLSDGSRLTGRV
Sbjct 61 SASALLDGLD---DVGDRYVLEVSSPGVDRPLTSEKHFRRARGRKVDVVLSDGSRLTGRV 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
GE R TVALV+R R + +REI A+I KAVVQVEFSPPA AELELA
Sbjct 118 GETRGDTVALVVRAGRDYRLREIARADIAKAVVQVEFSPPAQAELELA 165
>gi|118617679|ref|YP_906011.1| hypothetical protein MUL_2119 [Mycobacterium ulcerans Agy99]
gi|166987594|sp|A0PQC1.1|RIMP_MYCUA RecName: Full=Ribosome maturation factor rimP
gi|118569789|gb|ABL04540.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=177
Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/183 (72%), Positives = 148/183 (81%), Gaps = 6/183 (3%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG +FA AGYEIEDVVID RARPPRI V+ADGD LDLDTIA LSR
Sbjct 1 MTTGLPSQTQVIELLGGEFARAGYEIEDVVIDHRARPPRITVVADGDTTLDLDTIAVLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
AS+LLD LD I Y+LEVSSPG++RPLTSEKHFRRARG KVEL L+DGS+LTGR+
Sbjct 61 SASSLLDSLD---NIGDSYVLEVSSPGIDRPLTSEKHFRRARGPKVELTLADGSQLTGRI 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
G +++G++ LV+R R W VREIPLAE+ KAVVQVEFSPP PAELELA + G A GTE
Sbjct 118 GALQSGSLDLVVRAGREWKVREIPLAEVEKAVVQVEFSPPNPAELELATT---GRAAGTE 174
Query 181 AGA 183
A
Sbjct 175 VEA 177
>gi|342858326|ref|ZP_08714981.1| ribosome maturation protein RimP [Mycobacterium colombiense CECT
3035]
gi|342134030|gb|EGT87210.1| ribosome maturation protein RimP [Mycobacterium colombiense CECT
3035]
Length=177
Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/180 (73%), Positives = 141/180 (79%), Gaps = 6/180 (3%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG +FA AG+EIEDVVID R RPPRI VIADGD LDLDT A LSR
Sbjct 1 MTTGLPSQTQVIELLGGEFARAGFEIEDVVIDGRTRPPRILVIADGDDGLDLDTAATLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASALLDGLD I Y+LEVSSPGV+RPLTS KHFRRARGRKV++VLSDGS+LTGRV
Sbjct 61 SASALLDGLD---TIDDHYVLEVSSPGVDRPLTSAKHFRRARGRKVDVVLSDGSKLTGRV 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTE 180
GE VALV+R R W VREIPL +I KAVVQVEFSPP AELELA MG A TE
Sbjct 118 GETTDDAVALVVRAGRDWTVREIPLGDIAKAVVQVEFSPPNQAELELAG---MGQALRTE 174
>gi|254821856|ref|ZP_05226857.1| hypothetical protein MintA_18122 [Mycobacterium intracellulare
ATCC 13950]
Length=170
Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/169 (74%), Positives = 135/169 (80%), Gaps = 3/169 (1%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELL A+FA AGYEIEDVVIDAR RPPRI VIADGD LDLDT A LSR
Sbjct 1 MTTGLPSQTQVIELLDAEFARAGYEIEDVVIDARTRPPRITVIADGDDGLDLDTAATLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASALLD LD I Y+LEVSS GV+RPLTS KHFRRARGRKV+L LSDGS LTGR+
Sbjct 61 SASALLDDLD---TIGDHYVLEVSSRGVDRPLTSAKHFRRARGRKVDLTLSDGSTLTGRI 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQ 169
GE VALV+R R WA+REI L ++VKAVVQVEFSPPA AEL LA+
Sbjct 118 GETNEDAVALVVRTGRDWAIREISLGDVVKAVVQVEFSPPADAELALAK 166
>gi|118464499|ref|YP_882873.1| hypothetical protein MAV_3696 [Mycobacterium avium 104]
gi|166990891|sp|A0QIY5.1|RIMP_MYCA1 RecName: Full=Ribosome maturation factor rimP
gi|118165786|gb|ABK66683.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=178
Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/168 (74%), Positives = 136/168 (81%), Gaps = 3/168 (1%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG +FA AGYEIEDVVIDA ARPPRI VIADGD LDLD A LSR
Sbjct 1 MTTGLPSQTQVIELLGGEFARAGYEIEDVVIDAHARPPRITVIADGDDGLDLDAAATLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASALLD LD I Y+LEVSSPGV+RPL + KHFRRARGRKV++VLSD S +TGRV
Sbjct 61 SASALLDKLD---TIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKVDVVLSDNSTVTGRV 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
GE TVALV+R R WA+REIPL ++VKAVVQVEFSPPA AELELA
Sbjct 118 GETGDDTVALVVRAGRDWAIREIPLGDVVKAVVQVEFSPPAQAELELA 165
>gi|41409008|ref|NP_961844.1| hypothetical protein MAP2910c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|51316952|sp|Q73VV1.1|RIMP_MYCPA RecName: Full=Ribosome maturation factor rimP
gi|41397367|gb|AAS05227.1| hypothetical protein MAP_2910c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458994|gb|EGO37946.1| hypothetical protein MAPs_07610 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=178
Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/168 (74%), Positives = 136/168 (81%), Gaps = 3/168 (1%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+TTGLPSQ QVIELLG +FA AGYEIEDVVIDA ARPPRI VIADGD LDLD A LSR
Sbjct 1 MTTGLPSQTQVIELLGGEFARAGYEIEDVVIDAHARPPRITVIADGDDGLDLDAAATLSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASALLD LD I Y+LEVSSPGV+RPL + KHFRRARGRKV++VLSD S +TGRV
Sbjct 61 SASALLDKLD---TIEDHYVLEVSSPGVDRPLRTPKHFRRARGRKVDVVLSDNSTVTGRV 117
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
GE T+ALV+R R WA+REIPL ++VKAVVQVEFSPPA AELELA
Sbjct 118 GETGDDTIALVVRAGRDWAIREIPLGDVVKAVVQVEFSPPAQAELELA 165
>gi|120403302|ref|YP_953131.1| hypothetical protein Mvan_2311 [Mycobacterium vanbaalenii PYR-1]
gi|259585796|sp|A1T7H5.1|RIMP_MYCVP RecName: Full=Ribosome maturation factor rimP
gi|119956120|gb|ABM13125.1| protein of unknown function DUF150 [Mycobacterium vanbaalenii
PYR-1]
Length=176
Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/168 (65%), Positives = 131/168 (78%), Gaps = 6/168 (3%)
Query 2 TTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRR 61
+TGLPSQRQV+ELL +F AGY++EDVVIDA +RPPRI V+ D D LDLD++A LSR
Sbjct 5 STGLPSQRQVVELLDGEFTRAGYDLEDVVIDAASRPPRITVVTDSDHGLDLDSVAELSRI 64
Query 62 ASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVG 121
AS LLDGLD A Y+LEV+SPGV+RPLT+EKH+RRARGR E+ L+DGS LTGR+G
Sbjct 65 ASELLDGLDSAP-----YVLEVTSPGVDRPLTTEKHYRRARGRLAEITLTDGSVLTGRIG 119
Query 122 EMRAGTVALVIREDR-GWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
+ GTV +V+RE R +VREI L I KAVVQVEFSPP+P ELELA
Sbjct 120 GVADGTVGVVVREGRSNLSVREIALNAIAKAVVQVEFSPPSPRELELA 167
>gi|108799046|ref|YP_639243.1| hypothetical protein Mmcs_2079 [Mycobacterium sp. MCS]
gi|119868161|ref|YP_938113.1| hypothetical protein Mkms_2125 [Mycobacterium sp. KMS]
gi|126434649|ref|YP_001070340.1| hypothetical protein Mjls_2062 [Mycobacterium sp. JLS]
6 more sequence titles
Length=192
Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/174 (65%), Positives = 133/174 (77%), Gaps = 8/174 (4%)
Query 3 TGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRA 62
TGLPSQ QV ELL +FA AGYEIE+VVID ARPPRI V+ DGD PLDLDT+A+LSR A
Sbjct 10 TGLPSQEQVKELLDGEFARAGYEIENVVIDGGARPPRITVVVDGDRPLDLDTVASLSRSA 69
Query 63 SALLDGLD----GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTG 118
S LD +D G Y+LEV+SPGV+RPLT+EKH+RRARGRKVEL LSDGS+LTG
Sbjct 70 SEQLDRVDESGPGVTADAATYVLEVTSPGVDRPLTTEKHYRRARGRKVELTLSDGSQLTG 129
Query 119 RVGEMRAG--TVALVIRED--RGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
R+G + A +V+LV+RE ++VRE+PL IVKAVVQVEFSPP+ ELEL
Sbjct 130 RIGALTADGESVSLVVREGARANFSVRELPLEGIVKAVVQVEFSPPSQRELELT 183
>gi|145224622|ref|YP_001135300.1| hypothetical protein Mflv_4042 [Mycobacterium gilvum PYR-GCK]
gi|315444954|ref|YP_004077833.1| hypothetical protein Mspyr1_33870 [Mycobacterium sp. Spyr1]
gi|259585792|sp|A4TCF3.1|RIMP_MYCGI RecName: Full=Ribosome maturation factor rimP
gi|145217108|gb|ABP46512.1| protein of unknown function DUF150 [Mycobacterium gilvum PYR-GCK]
gi|315263257|gb|ADT99998.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=178
Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 109/166 (66%), Positives = 127/166 (77%), Gaps = 6/166 (3%)
Query 4 GLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRAS 63
GLPSQRQV+ELL +FA AGY+IEDVVIDA RPPRI VIADGD LDLD +A LSR AS
Sbjct 11 GLPSQRQVVELLDGEFARAGYDIEDVVIDAATRPPRIVVIADGDRGLDLDAVAELSRLAS 70
Query 64 ALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEM 123
LD LD Y+LEV+SPGV+RPLT EKH+RRA+GR E+ L+DGS LTGR+G +
Sbjct 71 EQLDTLDTPP-----YVLEVTSPGVDRPLTEEKHYRRAQGRLAEVTLADGSTLTGRIGAV 125
Query 124 RAGTVALVIREDR-GWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
+ TVALV+RE R VR+I L +VKAVVQVEFSPP+P ELELA
Sbjct 126 QNATVALVVREARSNLTVRDIALDAVVKAVVQVEFSPPSPRELELA 171
>gi|118473512|ref|YP_886961.1| hypothetical protein MSMEG_2624 [Mycobacterium smegmatis str.
MC2 155]
gi|259585793|sp|A0QVM3.1|RIMP_MYCS2 RecName: Full=Ribosome maturation factor rimP
gi|118174799|gb|ABK75695.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=181
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/170 (61%), Positives = 127/170 (75%), Gaps = 3/170 (1%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
LPSQ+QVIELL +FA AGYEI+DVV++A RP RI ++ADGD LDLD +A LSR AS
Sbjct 12 LPSQKQVIELLDGEFARAGYEIDDVVVNAATRPARITIVADGDKGLDLDAVAMLSRLASG 71
Query 65 LLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
LLD +D + Y+LEV+SPGV+RPLT+EKHFRRARGRK EL L+DGS LT R+G
Sbjct 72 LLDTVDTGDT---PYVLEVTSPGVDRPLTTEKHFRRARGRKAELSLADGSSLTARLGGTD 128
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMG 174
V +V+ + + +AVR+IPL EI KAVVQVEFSPP ELELA+ + G
Sbjct 129 GDQVNVVVAQGKDFAVRQIPLREITKAVVQVEFSPPNRRELELAEQTGKG 178
>gi|333991206|ref|YP_004523820.1| hypothetical protein JDM601_2566 [Mycobacterium sp. JDM601]
gi|333487174|gb|AEF36566.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=177
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/167 (65%), Positives = 127/167 (77%), Gaps = 4/167 (2%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+ TGLPSQ QVIELL A+F+ AGYEIEDVV+D RA PRI V+ADGD PLDLDT AALSR
Sbjct 1 MATGLPSQTQVIELLDAEFSRAGYEIEDVVVDDRAPLPRITVVADGDTPLDLDTAAALSR 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
AS LLDGL GRY+LEVSSPGV+RPLT+ KHFRRA GRKVE+ LSD + +TGRV
Sbjct 61 SASDLLDGL----SFDGRYVLEVSSPGVQRPLTAPKHFRRAHGRKVEVTLSDETGVTGRV 116
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELEL 167
++ V LV+R R W R +PL++I +AVVQVEF+ P+ ELEL
Sbjct 117 ADVDDDVVTLVVRGGRDWERRRLPLSDIKRAVVQVEFAAPSARELEL 163
>gi|169630218|ref|YP_001703867.1| hypothetical protein MAB_3136c [Mycobacterium abscessus ATCC
19977]
gi|259585791|sp|B1MD92.1|RIMP_MYCA9 RecName: Full=Ribosome maturation factor rimP
gi|169242185|emb|CAM63213.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=189
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/172 (48%), Positives = 110/172 (64%), Gaps = 9/172 (5%)
Query 2 TTGLPSQRQVIELLGADFACAGYEIEDVVID---ARARPPRIAVIADGDAPLDLDTIAAL 58
+TGLPS QV+ELL +F+ +G EIE VV+ RP RIAV+ D D P+DLD +A L
Sbjct 11 STGLPSDDQVLELLAPEFSRSGVEIESVVVSDGGVAGRPSRIAVVVDSDTPVDLDAVAGL 70
Query 59 SRRASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTG 118
SR ASALLD D + Y LE+++PGV+RPLT+ HFRRA R ++ L++G L G
Sbjct 71 SRTASALLDEADTGWQ---AYELEITTPGVDRPLTTVAHFRRAHLRLAQIRLTNGEDLLG 127
Query 119 RVGEMRAGTVALVIRED---RGWAVREIPLAEIVKAVVQVEFSPPAPAELEL 167
R+G V +V+R+ GW VR++ ++I AVVQVEF+ P P EL L
Sbjct 128 RIGITHDDGVQVVLRKPIKGTGWTVRDLAFSDIESAVVQVEFNTPNPQELNL 179
>gi|226306116|ref|YP_002766076.1| hypothetical protein RER_26290 [Rhodococcus erythropolis PR4]
gi|259586185|sp|C0ZYA2.1|RIMP_RHOE4 RecName: Full=Ribosome maturation factor rimP
gi|226185233|dbj|BAH33337.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=206
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/164 (46%), Positives = 107/164 (66%), Gaps = 3/164 (1%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+PS+ +VIEL+ GY++EDVV+ + + + ++ D DA ++LD A +SR S
Sbjct 3 VPSRERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAGIELDAAAEISRLVSE 62
Query 65 LLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
L D L+ + Y LEV+SPG++RPLT E+H+RRARGRK + L+ G + GR+G +
Sbjct 63 LFDSLEEIGETP--YTLEVTSPGIDRPLTLERHWRRARGRKARIDLA-GETVVGRIGTLN 119
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
+VA+VI G VREI L ++ KAVVQVEFS P+ AELELA
Sbjct 120 DDSVAVVIGGRGGLTVREIALGDVQKAVVQVEFSKPSEAELELA 163
>gi|229491457|ref|ZP_04385281.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321742|gb|EEN87539.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=206
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/164 (46%), Positives = 107/164 (66%), Gaps = 3/164 (1%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+PS+ +VIEL+ GY++EDVV+ + + + ++ D DA ++LD A +SR S
Sbjct 3 VPSRERVIELISELVHAQGYDVEDVVVTSAGKHSAVRIMVDSDAGIELDAAAEISRLVSE 62
Query 65 LLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
L D L+ + Y LEV+SPG++RPLT ++H+RRARGRK + L+ G + GR+G +
Sbjct 63 LFDTLEEIGETP--YTLEVTSPGIDRPLTLDRHWRRARGRKARIDLA-GETVVGRIGTLN 119
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
+VA+VI G VREI L ++ KAVVQVEFS P+ AELELA
Sbjct 120 DDSVAVVIGGRGGLTVREIALGDVQKAVVQVEFSKPSEAELELA 163
>gi|34223166|sp|Q9Z5J2.2|RIMP_MYCLE RecName: Full=Putative ribosome maturation factor rimP
Length=150
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/108 (65%), Positives = 78/108 (73%), Gaps = 3/108 (2%)
Query 1 VTTGLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSR 60
+ TGLPSQ QVIELLG + A AGYE+EDV+I ++P I V+ADGD L D IA LS
Sbjct 1 MNTGLPSQIQVIELLGGEVARAGYEVEDVIIHTWSQPFWITVLADGDTVLARDIIATLSH 60
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVEL 108
SALLDGLD I RY LEVSS G+ RP TSEKHFRRARGRKVEL
Sbjct 61 SVSALLDGLD---NIVDRYFLEVSSLGMGRPFTSEKHFRRARGRKVEL 105
>gi|226366089|ref|YP_002783872.1| hypothetical protein ROP_66800 [Rhodococcus opacus B4]
gi|254806567|sp|C1B310.1|RIMP_RHOOB RecName: Full=Ribosome maturation factor rimP
gi|226244579|dbj|BAH54927.1| hypothetical protein [Rhodococcus opacus B4]
Length=190
Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/164 (44%), Positives = 102/164 (63%), Gaps = 3/164 (1%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+PS+ +V EL+ GY++EDV + + + ++ D DA L+LD +A LS S
Sbjct 3 VPSKERVTELISDLVQRQGYDVEDVAVTLAGKHSAVRIMVDSDAGLELDAVANLSHEISE 62
Query 65 LLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
+ D + + Y LEV+SPG++RPLT E+H+RRARGRK + L+ + + GR+G +
Sbjct 63 VFDSVSDFGE--SPYTLEVTSPGIDRPLTHERHWRRARGRKARIDLAHET-VVGRIGALD 119
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
+VA+VI G VR I LA+I KAVVQVEFS P P ELELA
Sbjct 120 GDSVAVVIGSRTGPDVRRIALADIQKAVVQVEFSKPDPRELELA 163
>gi|325676663|ref|ZP_08156338.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC
33707]
gi|325552518|gb|EGD22205.1| hypothetical protein HMPREF0724_14121 [Rhodococcus equi ATCC
33707]
Length=189
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/164 (46%), Positives = 104/164 (64%), Gaps = 3/164 (1%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+PS+ +V+ELL GY++EDV I R + V+ D D+ L+LD +A LS S
Sbjct 3 VPSRERVVELLADPIGREGYDLEDVTITLAGRHSSVRVMVDSDSGLELDEVARLSHVISD 62
Query 65 LLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
+ D ++ Y LEV+SPG++RPLT +H+RRA+GRKV + L++ S +TGRVG +
Sbjct 63 VFDA--ASDFGESPYTLEVTSPGIDRPLTEGRHWRRAQGRKVLVELAEES-VTGRVGRLT 119
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
G V LV++ G VR + LA++ KAVVQVEFS P ELELA
Sbjct 120 DGGVDLVVKAKGGPVVRRVELADVKKAVVQVEFSRPDAKELELA 163
>gi|312139327|ref|YP_004006663.1| hypothetical protein REQ_19140 [Rhodococcus equi 103S]
gi|311888666|emb|CBH47978.1| conserved hypothetical protein [Rhodococcus equi 103S]
Length=181
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/158 (45%), Positives = 98/158 (63%), Gaps = 3/158 (1%)
Query 11 VIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLD 70
++ELL GY +EDV I R + V+ D D+ L+LD +A LS S + D
Sbjct 1 MVELLADPIGREGYGLEDVTITLAGRHSSVRVMVDSDSGLELDEVARLSHVISDVFDA-- 58
Query 71 GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRAGTVAL 130
++ Y LEV+SPG++RPLT +H+RRA+GRKV + L++ S +TGRVG + G V L
Sbjct 59 ASDFGESPYTLEVTSPGIDRPLTEGRHWRRAQGRKVLVELAEES-VTGRVGRLTDGGVDL 117
Query 131 VIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
V++ G VR + LA++ KAVVQVEFS P ELELA
Sbjct 118 VVKAKGGPVVRRVELADVKKAVVQVEFSRPDAKELELA 155
>gi|333919288|ref|YP_004492869.1| ribosome maturation factor rimP [Amycolicicoccus subflavus DQS3-9A1]
gi|333481509|gb|AEF40069.1| Ribosome maturation factor rimP [Amycolicicoccus subflavus DQS3-9A1]
Length=185
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/168 (43%), Positives = 104/168 (62%), Gaps = 9/168 (5%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+PS+ V+ ++ G ++E+V + + I+V+ D D+ D+D +A LSR S
Sbjct 3 VPSREDVVGIVAPYVERRGLDLEEVRVAPAGKRSMISVVVDADSRPDIDALATLSREISE 62
Query 65 LLDGLDGANKI-RGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVG-- 121
+LD AN + Y+LEV+SPGV+RPLT+ +H+RRARGRKV++ + G L GRVG
Sbjct 63 VLDA---ANTFGQAPYVLEVTSPGVDRPLTAPRHWRRARGRKVQMTVG-GKSLRGRVGAL 118
Query 122 --EMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELEL 167
E+ +V +V+ G VR + LAEI KAVVQVEFS P P E++L
Sbjct 119 IPELDPHSVEIVVPGKPGPQVRVVALAEIGKAVVQVEFSEPDPREIQL 166
>gi|54026040|ref|YP_120282.1| hypothetical protein nfa40690 [Nocardia farcinica IFM 10152]
gi|81373776|sp|Q5YSC3.1|RIMP_NOCFA RecName: Full=Ribosome maturation factor rimP
gi|54017548|dbj|BAD58918.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=217
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/182 (41%), Positives = 103/182 (57%), Gaps = 25/182 (13%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVI-------DARARPPRIAVIADGDAPLDLDTIAA 57
+P++ +V +L+ G+++E V I DA+ PR+ V+ D D DLD +A
Sbjct 3 MPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQ---PRVTVVVDSDGAADLDAVAE 59
Query 58 LSRRASALLDGLDGANKIRGR--YLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSR 115
LS S +LD D I G YLLEV++PGV+RPLT+ +H+RRA+GRKV + L G+
Sbjct 60 LSSEMSVVLDDTD----IFGDSPYLLEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAE 115
Query 116 ---------LTGRVGEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELE 166
RVG + +ALV+ R +PLA+I +AVVQVEFSPP ELE
Sbjct 116 PPDPGGSAGFEARVGVLDGEQIALVLGGKRNPHRVRVPLADIERAVVQVEFSPPGARELE 175
Query 167 LA 168
LA
Sbjct 176 LA 177
>gi|343926766|ref|ZP_08766263.1| ribosome maturation factor RimP [Gordonia alkanivorans NBRC 16433]
gi|343763365|dbj|GAA13189.1| ribosome maturation factor RimP [Gordonia alkanivorans NBRC 16433]
Length=189
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/164 (41%), Positives = 96/164 (59%), Gaps = 6/164 (3%)
Query 10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGL 69
QV EL+ G+++EDV+++ R + ++ D D DLD +A LS R S LLD +
Sbjct 7 QVSELVEKLVVEQGFDLEDVIVNRRDGQDELTIVVDRDGGGDLDVLADLSNRISELLDAV 66
Query 70 DGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVL-----SDGSRLTGRVGEMR 124
Y+LEV+SPGV+RPLT +H+RR GR+V + + S+ LTGR+G++
Sbjct 67 PELTD-EDAYVLEVTSPGVDRPLTLPRHWRRNTGRRVAVDVAPLEGSEERSLTGRIGKLD 125
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
V +V+ AV IPL + +AVVQV+FS P+ AELEL
Sbjct 126 ETNVEIVMNLRGRIAVETIPLEAVTRAVVQVDFSQPSVAELELC 169
>gi|111023600|ref|YP_706572.1| hypothetical protein RHA1_ro06641 [Rhodococcus jostii RHA1]
gi|123339654|sp|Q0S222.1|RIMP_RHOSR RecName: Full=Ribosome maturation factor rimP
gi|110823130|gb|ABG98414.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=190
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/164 (43%), Positives = 100/164 (61%), Gaps = 3/164 (1%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+PS+ +V EL+ GY++EDV + R + ++ D DA L+LD +A LS S
Sbjct 3 VPSKERVTELISDLVQRQGYDLEDVAVTLAGRHSAVRIMVDSDAGLELDAVANLSHEISE 62
Query 65 LLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
+ D + + Y LEV+SPG+ RPLT E+H+RRARGR+ + L+ + + GR+G +
Sbjct 63 VFDSVSDFGE--SPYTLEVTSPGIGRPLTHERHWRRARGRRARIDLAHET-VVGRIGLLD 119
Query 125 AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
+VA+VI G VR + L +I KAVVQVEFS P P ELELA
Sbjct 120 GDSVAVVIGSRTGPEVRRVALPDIQKAVVQVEFSKPDPRELELA 163
>gi|331698437|ref|YP_004334676.1| ribosome maturation factor rimP [Pseudonocardia dioxanivorans
CB1190]
gi|326953126|gb|AEA26823.1| Ribosome maturation factor rimP [Pseudonocardia dioxanivorans
CB1190]
Length=176
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/166 (43%), Positives = 103/166 (63%), Gaps = 11/166 (6%)
Query 6 PSQ--RQVIELLGADFACAGYEIEDVVIDARARPPRIAVI---ADGDAPLDLDTIAALSR 60
P Q RQ+ ++L A AG+E++++ + A R + V+ AD A ++LD IA LSR
Sbjct 4 PDQLGRQLQDVLEPIVAGAGFELDELDVRATGRRHTVKVVVDSADEAAGVNLDDIARLSR 63
Query 61 RASALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRV 120
ASA LD + + I G Y LEV+SPG++RPLT +H+RRA R VE+ L +G +L GR+
Sbjct 64 AASAELDQHE--HLIGGSYTLEVTSPGIDRPLTQPRHWRRAYLRLVEVTLVEGGKLAGRI 121
Query 121 GEMRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELE 166
G RAG A+ + D +VR + A++ KA+VQVEF AE+E
Sbjct 122 G--RAGEDAVDVLVD--GSVRSVAYADVAKALVQVEFKQAPEAEIE 163
>gi|262202084|ref|YP_003273292.1| hypothetical protein Gbro_2150 [Gordonia bronchialis DSM 43247]
gi|262085431|gb|ACY21399.1| protein of unknown function DUF150 [Gordonia bronchialis DSM
43247]
Length=179
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/165 (37%), Positives = 91/165 (56%), Gaps = 5/165 (3%)
Query 4 GLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRAS 63
G P ++E + D G+++EDVV+ R +V+ D D DLD +A LS
Sbjct 4 GSPELNDLVEKVVTD---RGFDLEDVVVRRRDGRDEFSVVVDRDGGSDLDVLAELSTEIG 60
Query 64 ALLDGLDGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEM 123
+LD + Y LEV+SPG++RPLT+ +H+RRA GR+V + + GRVG++
Sbjct 61 EVLDAVPALAD--AAYTLEVTSPGIDRPLTAPRHWRRALGRRVRIERDGSDAVVGRVGQV 118
Query 124 RAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELA 168
VA+V+ AV + + +AVVQVEFS P+ AELE+
Sbjct 119 SGDDVAIVVNHKGRLAVETVGFDSVTRAVVQVEFSRPSVAELEMC 163
>gi|257055489|ref|YP_003133321.1| hypothetical protein Svir_14540 [Saccharomonospora viridis DSM
43017]
gi|256585361|gb|ACU96494.1| uncharacterized conserved protein [Saccharomonospora viridis
DSM 43017]
Length=179
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/161 (36%), Positives = 93/161 (58%), Gaps = 6/161 (3%)
Query 14 LLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGAN 73
L+ AG++++ + + R + V+ DGD ++LD +A +SR SA+LD D +
Sbjct 12 LVAEAVGAAGFDLDALDVQQAGRRKLVKVVVDGDEGVELDKVAEISRAVSAVLDQHD--H 69
Query 74 KIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRAGTVALVIR 133
I G Y LEV+SPG++RPLT +H+RR+R R V + +G GRVG +V +++
Sbjct 70 LIAGAYTLEVTSPGLDRPLTKPRHWRRSRNRLVRVTPKEGPAYIGRVGAAGEDSVRILVD 129
Query 134 EDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMG 174
+ +R++ A++ KAVV+VEF P EL L ++ G
Sbjct 130 GE----IRDLRYADVRKAVVEVEFKQPPAEELRLLETDSYG 166
>gi|255325208|ref|ZP_05366314.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|311739682|ref|ZP_07713517.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297773|gb|EET77084.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|311305498|gb|EFQ81566.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length=179
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/166 (34%), Positives = 85/166 (52%), Gaps = 4/166 (2%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
P +Q+ +LL A G ++ED+ + ++ + DGD D + +S SA
Sbjct 3 FPDAQQLTDLLQPKLAERGLDVEDIKTTKAGKKSQVIIRIDGDKRPSSDVLEEVSNEISA 62
Query 65 LLDGLDGANKIR--GRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGE 122
D + ++ Y LEVS+PGV+ PLT+ +H+RR RGRKV L DG + R+G
Sbjct 63 FFDDKEAQGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNRGRKVSFDLGDGKTQSARIGA 122
Query 123 MR--AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELE 166
+ A V L+ + R L I +AVV++EF+ P+ ELE
Sbjct 123 LNDAADAVILITASKKDVQARAERLENIARAVVEIEFAQPSEQELE 168
>gi|300788186|ref|YP_003768477.1| hypothetical protein AMED_6341 [Amycolatopsis mediterranei U32]
gi|299797700|gb|ADJ48075.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340529771|gb|AEK44976.1| ribosome maturation protein RimP [Amycolatopsis mediterranei
S699]
Length=168
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/155 (36%), Positives = 90/155 (59%), Gaps = 6/155 (3%)
Query 21 CAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGANKIRGRYL 80
AG++++ + R + V+ D D + LD IA +SR SA LD + + + Y
Sbjct 7 AAGFDLDSFEVQQAGRRQLVKVVVDSDDGVGLDEIAEISRTVSATLD--ENEHVLASAYT 64
Query 81 LEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRAGTVALVIREDRGWAV 140
LEV+SPG++RPLT +H+RRAR R V++ ++G+ GRVG AG A + G +
Sbjct 65 LEVTSPGLDRPLTQPRHWRRARFRLVKISPAEGAPFVGRVG--HAGEDAARVLA--GGKL 120
Query 141 REIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGL 175
R++ A++ KAVV++EF P +L+L ++ G+
Sbjct 121 RDVRYADVEKAVVEIEFKQPPAEDLKLLENDASGM 155
>gi|134102375|ref|YP_001108036.1| hypothetical protein SACE_5928 [Saccharopolyspora erythraea NRRL
2338]
gi|291004240|ref|ZP_06562213.1| hypothetical protein SeryN2_06952 [Saccharopolyspora erythraea
NRRL 2338]
gi|167016718|sp|A4FM36.1|RIMP_SACEN RecName: Full=Ribosome maturation factor rimP
gi|133914998|emb|CAM05111.1| protein of unknown function DUF150 [Saccharopolyspora erythraea
NRRL 2338]
Length=185
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/166 (38%), Positives = 96/166 (58%), Gaps = 9/166 (5%)
Query 19 FACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGANKIRGR 78
+ AG+++E++ + R + V+ D + + LD I+ +SR S +LD + + + G
Sbjct 21 VSAAGFDLEELDVQQAGRRRLVKVVVDAEEGVGLDEISEISRAVSKVLDAHE--HVLAGS 78
Query 79 YLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEM-RAGTVALVIREDRG 137
Y LEV+SPGV+RPLT +H+RRAR R V + L+DGS L RVGE G V L E R
Sbjct 79 YTLEVTSPGVDRPLTRPRHWRRARYRLVRVRLADGSDLVVRVGEADDEGVVVLADGEIRT 138
Query 138 WAVREIPLAEIVKAVVQVEF-SPPAPAELELAQSSEMGLARGTEAG 182
A R++ +AVV+VEF PPA + L ++++ RG + G
Sbjct 139 LAYRDVE-----RAVVEVEFQQPPAEDLVRLERAADGAPERGGDRG 179
>gi|4455675|emb|CAB36567.1| hypothetical protein MLCB596.11 [Mycobacterium leprae]
Length=122
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/80 (62%), Positives = 55/80 (69%), Gaps = 3/80 (3%)
Query 29 VVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGANKIRGRYLLEVSSPGV 88
++I ++P I V+ADGD L D IA LS SALLDGLD I RY LEVSS G+
Sbjct 1 MIIHTWSQPFWITVLADGDTVLARDIIATLSHSVSALLDGLD---NIVDRYFLEVSSLGM 57
Query 89 ERPLTSEKHFRRARGRKVEL 108
RP TSEKHFRRARGRKVEL
Sbjct 58 GRPFTSEKHFRRARGRKVEL 77
>gi|296269041|ref|YP_003651673.1| hypothetical protein Tbis_1058 [Thermobispora bispora DSM 43833]
gi|296091828|gb|ADG87780.1| protein of unknown function DUF150 [Thermobispora bispora DSM
43833]
Length=171
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/172 (39%), Positives = 94/172 (55%), Gaps = 9/172 (5%)
Query 10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGL 69
+++ELLG G ++EDV I + R + V+ D D + +D IA +SR S LD +
Sbjct 9 RLVELLGPVVEAKGLDLEDVTITSAGRRRIVRVVVDRDGGVTVDEIADVSRSVSDRLDEV 68
Query 70 DGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRAGTVA 129
D Y+LEV+SPGV+RPLT ++H+RRARG V+ VL DG + GR+ ++ V
Sbjct 69 DVLGD--APYVLEVTSPGVDRPLTEQRHWRRARGLLVKAVLRDGGTVEGRITDVTETEVE 126
Query 130 LVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTEA 181
L R IPLA++VK VQ+EF P A + + LA G E
Sbjct 127 LD-------GTRRIPLADLVKGRVQLEFGRPRDAGTARGGNGKDALAIGDEG 171
>gi|213964632|ref|ZP_03392832.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213952825|gb|EEB64207.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=190
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/177 (32%), Positives = 91/177 (52%), Gaps = 17/177 (9%)
Query 5 LPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASA 64
+P+ ++ + + A G ++EDV + ++ V+ D D DLD + + S+
Sbjct 3 IPAPEKIEQFVSPALAQIGLDVEDVKVVRAGAKSQVIVLIDADERPDLDVLEQATHEVSS 62
Query 65 LLDGLDGANKIRGR-------YLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLT 117
LD A + RG Y LEVS+PG++ PLT +H+RR RGR E+ L+DGS +
Sbjct 63 ALD----AAEARGEADFGAQGYTLEVSTPGIDAPLTQPRHWRRNRGRIAEISLADGSAIA 118
Query 118 GRVGEMRAGTVALVIREDRGWAVR------EIPLAEIVKAVVQVEFSPPAPAELELA 168
R+G + ++++ +G R + L + +AVVQVEFS P AE + A
Sbjct 119 ARIGALSPDEESIILVTSKGPKGRLKAVGQRVQLTNVARAVVQVEFSNPPAAEKDFA 175
>gi|227503406|ref|ZP_03933455.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
gi|227075909|gb|EEI13872.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
Length=179
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/167 (33%), Positives = 85/167 (51%), Gaps = 4/167 (2%)
Query 4 GLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRAS 63
P +Q+ +LL A G ++ED+ + ++ + DGD D + +S S
Sbjct 2 AFPDAQQLTDLLQPRLAARGLDVEDIKTTKAGKKSQVIIRIDGDKRPSSDVLEEVSDDIS 61
Query 64 ALLDGLDGANKIR--GRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVG 121
A D + ++ Y LEVS+PGV+ PLTS +H+RR +GRKV D T R+G
Sbjct 62 AFFDEKEETGELNFGAGYTLEVSTPGVDLPLTSPRHWRRNQGRKVTFNRGDDKSHTARIG 121
Query 122 EMRAGTVALV-IREDRGWAVREIP-LAEIVKAVVQVEFSPPAPAELE 166
+ A A+V I ++ E+ L I AVV++EF+ P+ EL+
Sbjct 122 ALNAAEDAVVLITSEKNEVHTEVERLENIAHAVVEIEFAQPSQRELD 168
>gi|315502522|ref|YP_004081409.1| hypothetical protein ML5_1726 [Micromonospora sp. L5]
gi|315409141|gb|ADU07258.1| protein of unknown function DUF150 [Micromonospora sp. L5]
Length=216
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 89/155 (58%), Gaps = 12/155 (7%)
Query 9 RQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDG 68
R+VIE + AGY++ED+ + R + VI D D ++LD +A +SR SA LD
Sbjct 44 REVIEPV---VTAAGYDLEDLSVSRAGRRHVVRVIVDADGGINLDGVADVSRAVSAALDA 100
Query 69 LD--GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVL---SDGSRLTGRVGEM 123
+ G + + G Y LEVSSPGV+RPLT +H+RR GR V++ + + +LTGR+
Sbjct 101 AEEAGGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVRGDAGDRQLTGRI--T 158
Query 124 RAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFS 158
A +V+ D G A E P AE+ VQVEF+
Sbjct 159 AADDERVVLETDAGPA--EHPYAELGPGRVQVEFN 191
>gi|302865965|ref|YP_003834602.1| hypothetical protein Micau_1466 [Micromonospora aurantiaca ATCC
27029]
gi|302568824|gb|ADL45026.1| protein of unknown function DUF150 [Micromonospora aurantiaca
ATCC 27029]
Length=216
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 89/155 (58%), Gaps = 12/155 (7%)
Query 9 RQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDG 68
R+VIE + AGY++ED+ + R + VI D D ++LD +A +SR SA LD
Sbjct 44 REVIEPV---VTAAGYDLEDLSVSRAGRRHVVRVIVDADGGINLDGVADVSRAVSAALDA 100
Query 69 LD--GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVL---SDGSRLTGRVGEM 123
+ G + + G Y LEVSSPGV+RPLT +H+RR GR V++ + + +LTGR+
Sbjct 101 AEEAGGDIVAGEYQLEVSSPGVDRPLTLPRHWRRNAGRLVKVTVRGDAGDRQLTGRI--T 158
Query 124 RAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFS 158
A +V+ D G A E P AE+ VQVEF+
Sbjct 159 AADDERVVLETDAGPA--EHPYAELGPGRVQVEFN 191
>gi|227504823|ref|ZP_03934872.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
gi|227198673|gb|EEI78721.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
Length=188
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/172 (32%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query 4 GLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRAS 63
P Q+ ELL G ++EDV + ++ + DGD D + +S + S
Sbjct 2 AFPDAAQLTELLQPLLEPRGLDVEDVKTTKAGKKSQVIIRIDGDQRPSSDVLEEVSNQIS 61
Query 64 ALLDGLDGANKIR--GRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVG 121
D + + ++ Y LEVS+PGV+ PLT+ +H+RR RGR V L+ G R+G
Sbjct 62 EFFDAKEESGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNRGRLVAFELTPGKSEVARIG 121
Query 122 EMR--AGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSS 171
+ A +VAL+ + R L I +AVV++EF+ P+ E E AQ +
Sbjct 122 ALSDDASSVALITTVKKDVYFRIERLENIARAVVEIEFAKPSAVEQEAAQQT 173
>gi|326382938|ref|ZP_08204628.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL
B-59395]
gi|326198528|gb|EGD55712.1| ribosome maturation protein RimP [Gordonia neofelifaecis NRRL
B-59395]
Length=181
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/175 (37%), Positives = 97/175 (56%), Gaps = 11/175 (6%)
Query 13 ELLGADFACAGYEIEDVVIDARARPP---RIAVIADGDAPLDLDTIAALSRRASALLDGL 69
++L A A GY++E+V I PP I ++ D D LD +A LSR ++LD
Sbjct 12 DVLTAPLAEHGYDLEEVAI---LTPPGRREIRIVVDRDGGASLDALADLSRALESVLDDS 68
Query 70 DGANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKV--ELVLSDGSR-LTGRVGEMRAG 126
D + Y LE+++PG+ RPLT +H+RR++GRKV E + +R + RVGE
Sbjct 69 DLLGE--SPYDLELTTPGIGRPLTLPRHWRRSQGRKVTAEYTVDGAARTVEARVGESDDD 126
Query 127 TVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQSSEMGLARGTEA 181
V LV+ + ++ LA+IV+AVV+V+FS P A L S+ +AR E+
Sbjct 127 QVTLVLVDKSRIKTVDVALADIVRAVVEVDFSKPGEAALRACGLSDDEIARRRES 181
>gi|336179469|ref|YP_004584844.1| ribosome maturation factor rimP [Frankia symbiont of Datisca
glomerata]
gi|334860449|gb|AEH10923.1| Ribosome maturation factor rimP [Frankia symbiont of Datisca
glomerata]
Length=221
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 86/155 (56%), Gaps = 7/155 (4%)
Query 10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGL 69
+++ LL A G+++EDV + + V+ D D +DLD +A SR ASA+LD
Sbjct 35 ELVRLLTPQLAARGFDLEDVTVSRAGSRSVVRVVVDRDGGVDLDAVAEASRVASAVLDAA 94
Query 70 D-----GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMR 124
+ G + G Y+LEVSSPGV+RPL + +H+ RARGR V + DG L GRV
Sbjct 95 ETDPAAGDPPLAGPYVLEVSSPGVDRPLVAPRHWHRARGRLVSVRTRDGRELLGRVRATD 154
Query 125 AGTVALVIREDRGWA--VREIPLAEIVKAVVQVEF 157
T LV+ R V I A++V+A VQVEF
Sbjct 155 EQTAELVLEGGRTAVGEVLRISFADVVRAAVQVEF 189
>gi|306836352|ref|ZP_07469330.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|304567712|gb|EFM43299.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length=179
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (32%), Positives = 85/167 (51%), Gaps = 4/167 (2%)
Query 4 GLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRAS 63
P +Q+ +LL A G ++ED+ + ++ + DGD D + +S S
Sbjct 2 AFPDAQQLADLLQPRLAARGLDVEDIKTTKAGKKSQVIIRIDGDKRPSSDVLEEVSDDIS 61
Query 64 ALLDGLDGANKIR--GRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVG 121
A D + ++ Y LEVS+PGV+ PLT+ +H+RR +GRKV D T R+G
Sbjct 62 AFFDEKEETGELNFGAGYTLEVSTPGVDLPLTAPRHWRRNQGRKVTFNRGDDKSHTARIG 121
Query 122 EMRAGTVALV-IREDRGWAVREIP-LAEIVKAVVQVEFSPPAPAELE 166
+ A A+V I ++ E+ L I AVV++EF+ P+ EL+
Sbjct 122 ALNAAEDAVVLITSEKNEVHTEVERLENIAHAVVEIEFAQPSQRELD 168
>gi|319951027|ref|ZP_08024891.1| ribosome maturation protein RimP [Dietzia cinnamea P4]
gi|319435307|gb|EFV90563.1| ribosome maturation protein RimP [Dietzia cinnamea P4]
Length=181
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/149 (38%), Positives = 85/149 (58%), Gaps = 7/149 (4%)
Query 23 GYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGANKIRGRYLLE 82
G ++ED+ DAR+ R+ ++ DGDA + LD +A LS L +G G ++ LE
Sbjct 19 GLDLEDIREDARSSAWRVTIVVDGDAGVSLDDLADLSTDLDPLAEGWGGPDRP---VTLE 75
Query 83 VSSPGVERPLTSEKHFRRARGRKVELVLSDGSR--LTGRVGEMR--AGTVALVIREDRGW 138
V+S GV+ PL +H+RRARGR+V++ G++ RVG++ AG V LV R
Sbjct 76 VTSRGVDAPLEQPRHWRRARGRQVDITYVQGAKGPARARVGDLDEGAGVVRLVSGAGREK 135
Query 139 AVREIPLAEIVKAVVQVEFSPPAPAELEL 167
V + L ++ AV++VEF P EL+L
Sbjct 136 KVEPVALDQVAHAVIRVEFRPAPQDELDL 164
>gi|145593915|ref|YP_001158212.1| hypothetical protein Strop_1367 [Salinispora tropica CNB-440]
gi|259586196|sp|A4X4N4.1|RIMP_SALTO RecName: Full=Ribosome maturation factor rimP
gi|145303252|gb|ABP53834.1| protein of unknown function DUF150 [Salinispora tropica CNB-440]
Length=220
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/148 (42%), Positives = 80/148 (55%), Gaps = 13/148 (8%)
Query 22 AGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGA--NKIRGRY 79
AGY++E++ I R + VI D D +DLD +A +SR SA LD + A + + G Y
Sbjct 53 AGYDLEELSISRAGRRHVVQVIVDADGGIDLDAVADVSRAVSAALDAAEEARGDIVAGEY 112
Query 80 LLEVSSPGVERPLTSEKHFRRARGRKVELVLSDG-----SRLTGRVGEMRAGTVALVIRE 134
LEVSSPGV RPLT +H+RR GR V + + G +LTGRV E V L
Sbjct 113 QLEVSSPGVSRPLTLPRHWRRNAGRLVRVTVRGGPDAGDRQLTGRVVEADDEQVVLETDA 172
Query 135 DR-GWAVREIPLAEIVKAVVQVEFSPPA 161
R GW+ AE+ VQVEF+ P
Sbjct 173 GRAGWS-----YAELGPGRVQVEFTRPG 195
>gi|297562527|ref|YP_003681501.1| hypothetical protein Ndas_3595 [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846975|gb|ADH68995.1| protein of unknown function DUF150 [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=160
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/159 (38%), Positives = 86/159 (55%), Gaps = 10/159 (6%)
Query 8 QRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLD 67
+ ++ ELL A AG ++E V + + + V+ D D +DLDT+ +S+ + LLD
Sbjct 7 EERIAELLEPVLAEAGLDLEAVELTPAGKRRVLRVVVDSDNGVDLDTVGEVSQEVNTLLD 66
Query 68 GLD--GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRA 125
D GA Y+LEV+SPGV+RPLT +H+RR+RGR V L++G ++TGRV
Sbjct 67 SSDVMGAQP----YVLEVTSPGVDRPLTQPRHWRRSRGRLVIASLAEGGKVTGRVTGADD 122
Query 126 GTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAE 164
V L D R AE+ K VQVEF A +
Sbjct 123 DGVTL----DVEGQPRTFTHAELGKGRVQVEFRHDADTD 157
>gi|159036963|ref|YP_001536216.1| hypothetical protein Sare_1324 [Salinispora arenicola CNS-205]
gi|259586188|sp|A8M743.1|RIMP_SALAI RecName: Full=Ribosome maturation factor rimP
gi|157915798|gb|ABV97225.1| protein of unknown function DUF150 [Salinispora arenicola CNS-205]
Length=219
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/159 (40%), Positives = 85/159 (54%), Gaps = 14/159 (8%)
Query 10 QVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGL 69
QV+E + AGY++ED+ + R + VI D D +DLD +A +SR SA LD
Sbjct 44 QVVEPV---VQGAGYDLEDLSVSRAGRRHVVQVIVDADGGVDLDAVADVSRAVSAALDAA 100
Query 70 D--GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDG-----SRLTGRVGE 122
+ G + + G Y LEVSSPGV RPLT +H+RR GR V + G ++TGRV E
Sbjct 101 EEVGGDIVAGEYQLEVSSPGVARPLTLPRHWRRNTGRLVRFTVRGGPEAVDRQVTGRVVE 160
Query 123 MRAGTVALVIREDRGWAVREIPLAEIVKAVVQVEFSPPA 161
A +V+ D G E AE+ VQVEF+ P
Sbjct 161 --ADDERVVVETDAGRT--EWRHAELGPGRVQVEFTRPG 195
>gi|337290998|ref|YP_004630019.1| hypothetical protein CULC22_01390 [Corynebacterium ulcerans BR-AD22]
gi|334697112|gb|AEG81909.1| hypothetical protein CULC809_01377 [Corynebacterium ulcerans
809]
gi|334699304|gb|AEG84100.1| hypothetical protein CULC22_01390 [Corynebacterium ulcerans BR-AD22]
Length=184
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/170 (35%), Positives = 87/170 (52%), Gaps = 5/170 (2%)
Query 4 GLPSQRQVIELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRAS 63
PS + EL+ A ++E V ++ + +AV D D DLD + +S S
Sbjct 2 AFPSTEVLTELITPIAAAHNMDLEHVRVNRAGKKTLVAVSLDSDNRPDLDQLEVVSTAIS 61
Query 64 ALLDGLD--GANKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVG 121
L D + GA Y LEV +PGV+ PLT + +RR R R V L + +G + R+G
Sbjct 62 ELFDAQEASGALSFGPGYTLEVGTPGVDAPLTKPRQWRRNRHRLVALDV-EGKKSIERIG 120
Query 122 EMRAGT--VALVIREDRGWAVREIPLAEIVKAVVQVEFSPPAPAELELAQ 169
+ V +V R+ + ++R I L E +AVV++EF+ PA AELE Q
Sbjct 121 AVNDDETRVIVVKRQGKKISIRSIELGENTQAVVEIEFAKPAEAELEFTQ 170
>gi|312194981|ref|YP_004015042.1| hypothetical protein FraEuI1c_1099 [Frankia sp. EuI1c]
gi|311226317|gb|ADP79172.1| protein of unknown function DUF150 [Frankia sp. EuI1c]
Length=277
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/148 (40%), Positives = 83/148 (57%), Gaps = 8/148 (5%)
Query 19 FACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGANKIRGR 78
A AG++++D+ + + V D D +DLD +A SR S LLD +D + G
Sbjct 32 LARAGFDLDDLSLSRAGSRSVLRVAVDRDDGIDLDAVADASRLISDLLDQVD-EGGLAGA 90
Query 79 YLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRAGTVALVIRED--- 135
Y+LEV+SPGV+RPLT +H+RRARGR VE DG+ + GRV V L +
Sbjct 91 YVLEVTSPGVDRPLTEPRHWRRARGRLVEARRVDGTVVLGRVLGADDEGVDLAVAAGPVR 150
Query 136 RGWAVR----EIPLAEIVKAVVQVEFSP 159
RG V+ + A++ +AVVQ+EF P
Sbjct 151 RGRPVKTKIERLRFADVARAVVQIEFGP 178
>gi|21224052|ref|NP_629831.1| hypothetical protein SCO5703 [Streptomyces coelicolor A3(2)]
gi|289768764|ref|ZP_06528142.1| UPF0090 protein [Streptomyces lividans TK24]
gi|34223163|sp|Q9KYR2.1|RIMP_STRCO RecName: Full=Ribosome maturation factor rimP
gi|7801275|emb|CAB91139.1| hypothetical protein SC5H4.27 [Streptomyces coelicolor A3(2)]
gi|289698963|gb|EFD66392.1| UPF0090 protein [Streptomyces lividans TK24]
Length=177
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/148 (38%), Positives = 78/148 (53%), Gaps = 4/148 (2%)
Query 13 ELLGADFACAGYEIEDVVIDARARPPRIAVIADGDAPLDLDTIAALSRRASALLDGLDGA 72
ELL A G ++E++ +D+ R ++V+ D D DLD IA +SR SA LD D
Sbjct 11 ELLEPLVASQGLDLEEIAVDSVGRRRVLSVVVDSDTGADLDRIADVSRALSAKLDETDAM 70
Query 73 NKIRGRYLLEVSSPGVERPLTSEKHFRRARGRKVELVLSDGSRLTGRVGEMRAGTVALVI 132
+ G Y LEV +PG ER LT +H+ RA R V L +G L R+ + + L +
Sbjct 71 GE--GEYTLEVGTPGAERSLTQHRHYVRATDRLVRFQLREGGELVARILAVDEDGLDLEV 128
Query 133 REDRGW--AVREIPLAEIVKAVVQVEFS 158
+G R +P +I KA VQVEF+
Sbjct 129 PGVKGRRPTTRRLPFGDIDKARVQVEFN 156
Lambda K H
0.317 0.136 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 167689013960
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40