BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2843
Length=181
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609980|ref|NP_217359.1| hypothetical protein Rv2843 [Mycoba... 336 9e-91
gi|167967196|ref|ZP_02549473.1| conserved alanine rich transmemb... 296 1e-78
gi|289444394|ref|ZP_06434138.1| conserved alanine rich membrane ... 291 2e-77
gi|308373524|ref|ZP_07432647.2| hypothetical protein TMEG_03986 ... 183 1e-44
gi|342858325|ref|ZP_08714980.1| hypothetical protein MCOL_05606 ... 180 8e-44
gi|15827821|ref|NP_302084.1| hypothetical protein ML1560 [Mycoba... 177 6e-43
gi|183981903|ref|YP_001850194.1| hypothetical protein MMAR_1890 ... 163 8e-39
gi|41409009|ref|NP_961845.1| hypothetical protein MAP2911 [Mycob... 162 2e-38
gi|296171598|ref|ZP_06852838.1| conserved hypothetical protein [... 161 4e-38
gi|118463351|ref|YP_882875.1| hypothetical protein MAV_3698 [Myc... 153 9e-36
gi|118617678|ref|YP_906010.1| hypothetical protein MUL_2118 [Myc... 139 1e-31
gi|108799045|ref|YP_639242.1| hypothetical protein Mmcs_2078 [My... 102 2e-20
gi|289754951|ref|ZP_06514329.1| LOW QUALITY PROTEIN: predicted p... 99.0 2e-19
gi|118467883|ref|YP_886960.1| Tat pathway signal sequence domain... 95.5 3e-18
gi|169630219|ref|YP_001703868.1| hypothetical protein MAB_3137 [... 80.1 1e-13
gi|254819678|ref|ZP_05224679.1| hypothetical protein MintA_07134... 78.2 5e-13
gi|333991207|ref|YP_004523821.1| hypothetical protein JDM601_256... 77.8 6e-13
gi|315444955|ref|YP_004077834.1| hypothetical protein Mspyr1_338... 74.3 8e-12
gi|145224623|ref|YP_001135301.1| hypothetical protein Mflv_4043 ... 73.9 8e-12
gi|120403301|ref|YP_953130.1| hypothetical protein Mvan_2310 [My... 67.0 1e-09
gi|254821855|ref|ZP_05226856.1| hypothetical protein MintA_18117... 61.6 4e-08
gi|229491389|ref|ZP_04385213.1| conserved hypothetical protein [... 61.2 5e-08
gi|262202083|ref|YP_003273291.1| hypothetical protein Gbro_2149 ... 59.7 2e-07
gi|325676664|ref|ZP_08156339.1| hypothetical protein HMPREF0724_... 55.1 5e-06
gi|312139326|ref|YP_004006662.1| hypothetical protein REQ_19120 ... 54.3 8e-06
gi|54026041|ref|YP_120283.1| hypothetical protein nfa40700 [Noca... 53.5 1e-05
gi|226306115|ref|YP_002766075.1| hypothetical protein RER_26280 ... 53.1 2e-05
gi|111023599|ref|YP_706571.1| hypothetical protein RHA1_ro06640 ... 48.9 3e-04
gi|343926765|ref|ZP_08766262.1| hypothetical protein GOALK_068_0... 48.1 6e-04
gi|226366088|ref|YP_002783871.1| hypothetical protein ROP_66790 ... 44.7 0.007
gi|333919287|ref|YP_004492868.1| hypothetical protein AS9A_1619 ... 40.8 0.094
gi|257055488|ref|YP_003133320.1| hypothetical protein Svir_14530... 40.0 0.14
gi|326382937|ref|ZP_08204627.1| hypothetical protein SCNU_08358 ... 39.7 0.19
gi|296139425|ref|YP_003646668.1| hypothetical protein Tpau_1711 ... 37.4 1.1
gi|331698438|ref|YP_004334677.1| hypothetical protein Psed_4677 ... 36.6 1.7
>gi|15609980|ref|NP_217359.1| hypothetical protein Rv2843 [Mycobacterium tuberculosis H37Rv]
gi|15842384|ref|NP_337421.1| hypothetical protein MT2909 [Mycobacterium tuberculosis CDC1551]
gi|31794020|ref|NP_856513.1| hypothetical protein Mb2868 [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=181
Score = 336 bits (861), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 180/181 (99%), Positives = 181/181 (100%), Gaps = 0/181 (0%)
Query 1 VLRAAPVINRLTNRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHD 60
+LRAAPVINRLTNRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHD
Sbjct 1 MLRAAPVINRLTNRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHD 60
Query 61 GALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSP 120
GALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSP
Sbjct 61 GALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSP 120
Query 121 TDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPS 180
TDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPS
Sbjct 121 TDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPS 180
Query 181 I 181
I
Sbjct 181 I 181
>gi|167967196|ref|ZP_02549473.1| conserved alanine rich transmembrane protein [Mycobacterium tuberculosis
H37Ra]
gi|297732455|ref|ZP_06961573.1| hypothetical protein MtubKR_15267 [Mycobacterium tuberculosis
KZN R506]
gi|323718542|gb|EGB27712.1| alanine rich membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|339295684|gb|AEJ47795.1| hypothetical protein CCDC5079_2605 [Mycobacterium tuberculosis
CCDC5079]
gi|339299299|gb|AEJ51409.1| hypothetical protein CCDC5180_2572 [Mycobacterium tuberculosis
CCDC5180]
Length=161
Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 21 VLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAA 80
+LAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAA
Sbjct 1 MLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAA 60
Query 81 LTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTS 140
LTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTS
Sbjct 61 LTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTS 120
Query 141 AGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
AGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI
Sbjct 121 AGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 161
>gi|289444394|ref|ZP_06434138.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T46]
gi|289417313|gb|EFD14553.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T46]
Length=166
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/157 (99%), Positives = 157/157 (100%), Gaps = 0/157 (0%)
Query 1 VLRAAPVINRLTNRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHD 60
+LRAAPVINRLTNRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHD
Sbjct 1 MLRAAPVINRLTNRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHD 60
Query 61 GALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSP 120
GALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSP
Sbjct 61 GALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSP 120
Query 121 TDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAG 157
TDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAG
Sbjct 121 TDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAG 157
>gi|308373524|ref|ZP_07432647.2| hypothetical protein TMEG_03986 [Mycobacterium tuberculosis SUMu005]
gi|308337321|gb|EFP26172.1| hypothetical protein TMEG_03986 [Mycobacterium tuberculosis SUMu005]
Length=99
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 83 VVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTSAG 142
VVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTSAG
Sbjct 1 VVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTSAG 60
Query 143 EASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
EASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI
Sbjct 61 EASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 99
>gi|342858325|ref|ZP_08714980.1| hypothetical protein MCOL_05606 [Mycobacterium colombiense CECT
3035]
gi|342134029|gb|EGT87209.1| hypothetical protein MCOL_05606 [Mycobacterium colombiense CECT
3035]
Length=159
Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/160 (73%), Positives = 128/160 (80%), Gaps = 7/160 (4%)
Query 27 ALAALGVV-SACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAALTVVA 85
A AALG V +ACG+SAPK P VE+L PLDQARHD LA AAA A+G PPQVAAALTVVA
Sbjct 2 AFAALGAVATACGKSAPKPPPVEQLLGPLDQARHDSTLAGAAAAAVGNPPQVAAALTVVA 61
Query 86 TQRTSHARALATEIARAAGKLVSATSETSSS-SPSPTDPA---APPPAVSDVIDSLRTSA 141
+QR +HARAL+ EI+RAAGKL ATS TS + SPS +PA PPP VSDVI++LR SA
Sbjct 62 SQRAAHARALSAEISRAAGKL--ATSSTSEAPSPSQAEPAGPPPPPPPVSDVINALRASA 119
Query 142 GEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
ASRLV T SGYRAGLLASIAASCTASYTVALVP GPSI
Sbjct 120 DSASRLVGTESGYRAGLLASIAASCTASYTVALVPGGPSI 159
>gi|15827821|ref|NP_302084.1| hypothetical protein ML1560 [Mycobacterium leprae TN]
gi|221230298|ref|YP_002503714.1| hypothetical protein MLBr_01560 [Mycobacterium leprae Br4923]
gi|4455674|emb|CAB36566.1| hypothetical protein MLCB596.10c [Mycobacterium leprae]
gi|13093373|emb|CAC30511.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933405|emb|CAR71655.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=178
Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 120/180 (67%), Positives = 134/180 (75%), Gaps = 10/180 (5%)
Query 4 AAPVINRLTNRPISRRGVLAGGAALAALGV-VSACGESAPKAPAVEELRSPLDQARHDGA 62
A PVINR RGVLAGGA L LGV SAC +S K P +EEL PLDQARHD A
Sbjct 7 AVPVINR--------RGVLAGGATLTVLGVCFSACSKSPSKTPEIEELLGPLDQARHDSA 58
Query 63 LAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSS-SSPSPT 121
LA+AAA AIG PQ+ AAL VVATQR +HARAL TEI+RA GKL S++S+T+S +
Sbjct 59 LASAAAAAIGNLPQITAALAVVATQRAAHARALVTEISRATGKLASSSSDTTSPGLSPAS 118
Query 122 DPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
P+ PPP VSDVID+LRTSA A RLV+T SGYRAGLLASIAASCTASYTVALV GPSI
Sbjct 119 PPSKPPPPVSDVIDALRTSAEGAGRLVSTASGYRAGLLASIAASCTASYTVALVSGGPSI 178
>gi|183981903|ref|YP_001850194.1| hypothetical protein MMAR_1890 [Mycobacterium marinum M]
gi|183175229|gb|ACC40339.1| conserved transmembrane alanine rich protein [Mycobacterium marinum
M]
Length=179
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 128/172 (75%), Positives = 141/172 (82%), Gaps = 6/172 (3%)
Query 16 ISRRGVLAGGA-ALAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIP 74
++RRGVLAGGA A VVSACGES PK PAVEEL +PL+QARHD ALA+AAA AIG P
Sbjct 8 LNRRGVLAGGAALAALGVVVSACGESPPKPPAVEELLAPLEQARHDSALASAAAGAIGNP 67
Query 75 PQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAP-----PPA 129
PQ+AAALTVVA QR +HARALATEIARAAGKLVSATSETSSSSPSP+ PP
Sbjct 68 PQIAAALTVVANQRAAHARALATEIARAAGKLVSATSETSSSSPSPSATEPQAPPPPPPP 127
Query 130 VSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
+SDV+DSLR SA +A+RLV TT GYRAGLLASIAASCTASY VAL+P GPSI
Sbjct 128 LSDVVDSLRQSAEDANRLVTTTEGYRAGLLASIAASCTASYQVALLPGGPSI 179
>gi|41409009|ref|NP_961845.1| hypothetical protein MAP2911 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397368|gb|AAS05228.1| hypothetical protein MAP_2911 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336458993|gb|EGO37945.1| hypothetical protein MAPs_07600 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=179
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/171 (73%), Positives = 136/171 (80%), Gaps = 2/171 (1%)
Query 13 NRPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIG 72
NR ++RR VLAGGAALAALG VSAC + APK P VE+L PLDQARHD ALA AAA A+G
Sbjct 9 NRRVNRREVLAGGAALAALGAVSACSKPAPKPPPVEQLLGPLDQARHDSALAGAAAAALG 68
Query 73 IPPQVAAALTVVATQRTSHARALATEIARAAGKL--VSATSETSSSSPSPTDPAAPPPAV 130
PPQVAAALTVVA+QR +HARAL+TEI+RAAGKL S + TS S P P PPP V
Sbjct 69 NPPQVAAALTVVASQRAAHARALSTEISRAAGKLATSSTSETTSPSPAQPAGPPPPPPPV 128
Query 131 SDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
SDVI++LR SA ASRLV T SGYRAGLLASIAASCTASYTVALVP GPSI
Sbjct 129 SDVINALRASADSASRLVGTESGYRAGLLASIAASCTASYTVALVPGGPSI 179
>gi|296171598|ref|ZP_06852838.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894053|gb|EFG73815.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=177
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/151 (71%), Positives = 119/151 (79%), Gaps = 4/151 (2%)
Query 35 SACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARA 94
SACGES PK PAVEEL PLDQAR D ALA AAA A+G PPQVAAALTVVA+QR +HARA
Sbjct 27 SACGESPPKPPAVEELLGPLDQARKDSALAGAAAAAVGNPPQVAAALTVVASQRAAHARA 86
Query 95 LATEIARAAGKLVSATSET----SSSSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVAT 150
L+TEI+RAAGK+ ++++ S S P P PPP VSDVI++LR SA ASRLVA+
Sbjct 87 LSTEISRAAGKITTSSTSETTGPSPSPAEPAGPPPPPPPVSDVINALRASADSASRLVAS 146
Query 151 TSGYRAGLLASIAASCTASYTVALVPSGPSI 181
SGYRAGLLASI ASCTASYTVALVP GPSI
Sbjct 147 ESGYRAGLLASIIASCTASYTVALVPGGPSI 177
>gi|118463351|ref|YP_882875.1| hypothetical protein MAV_3698 [Mycobacterium avium 104]
gi|118164638|gb|ABK65535.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=150
Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/150 (71%), Positives = 118/150 (79%), Gaps = 2/150 (1%)
Query 34 VSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHAR 93
+SAC + APK P VE+L PL+QARHD ALA AAA A+G PPQVAAALTVVA+QR +HAR
Sbjct 1 MSACSKPAPKPPPVEQLLGPLNQARHDSALAGAAAAALGNPPQVAAALTVVASQRAAHAR 60
Query 94 ALATEIARAAGKL--VSATSETSSSSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVATT 151
AL+TEI+RAAGKL S + TS S P P PPP VSDVI++LR SA ASRLV T
Sbjct 61 ALSTEISRAAGKLATSSTSETTSPSPAQPAGPPPPPPPVSDVINALRASADSASRLVGTE 120
Query 152 SGYRAGLLASIAASCTASYTVALVPSGPSI 181
SGYRAGLLASIAASCTASYTVALVP GPSI
Sbjct 121 SGYRAGLLASIAASCTASYTVALVPGGPSI 150
>gi|118617678|ref|YP_906010.1| hypothetical protein MUL_2118 [Mycobacterium ulcerans Agy99]
gi|118569788|gb|ABL04539.1| conserved transmembrane alanine rich protein [Mycobacterium ulcerans
Agy99]
Length=168
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/152 (70%), Positives = 118/152 (78%), Gaps = 11/152 (7%)
Query 35 SACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARA 94
SACGES PK PAVEEL +PL+QARHD ALA+AAA AIG PPQ+AAALTVVA QR +HARA
Sbjct 16 SACGESPPKRPAVEELLAPLEQARHDSALASAAAGAIGNPPQIAAALTVVANQRAAHARA 75
Query 95 LATEIARAAGKLVSATSETSSSSPSPTDPAAP-----PPAVSDVIDSLRTSAGEASRLVA 149
LATEIARAAGKLVSATSETSSSSPSP+ PP +SDV+DSLR SA +A+RLV
Sbjct 76 LATEIARAAGKLVSATSETSSSSPSPSATEPQAPPPPPPPLSDVVDSLRQSAEDANRLVT 135
Query 150 TTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
TT GYRAGLLASIAA C A P+G +
Sbjct 136 TTEGYRAGLLASIAAYC------APCPTGSRL 161
>gi|108799045|ref|YP_639242.1| hypothetical protein Mmcs_2078 [Mycobacterium sp. MCS]
gi|119868160|ref|YP_938112.1| hypothetical protein Mkms_2124 [Mycobacterium sp. KMS]
gi|126434648|ref|YP_001070339.1| hypothetical protein Mjls_2061 [Mycobacterium sp. JLS]
gi|108769464|gb|ABG08186.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119694249|gb|ABL91322.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126234448|gb|ABN97848.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=169
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/162 (49%), Positives = 101/162 (63%), Gaps = 9/162 (5%)
Query 16 ISRRGVLAGGAALAALGV-VSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIP 74
ISRRG+L A LA +GV V+ACG SAP P V+EL + LD+AR D LA AA P
Sbjct 10 ISRRGLLMSAATLAVVGVSVAACG-SAPPPPEVDELTAQLDRARADSRLATDAAATARQP 68
Query 75 PQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVI 134
+ LT +A +R +HA+ALA E+ R G T ++++P+ T A P V +VI
Sbjct 69 --MKQTLTTIAAERDAHAQALADELVRLVG-----TEAPTATAPTSTAAPATPATVREVI 121
Query 135 DSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVP 176
+LR SA A+ L A SGYRAGLL SIAASCTA++ VAL P
Sbjct 122 GALRQSAESATGLAAQMSGYRAGLLGSIAASCTAAWRVALAP 163
>gi|289754951|ref|ZP_06514329.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
EAS054]
gi|289695538|gb|EFD62967.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
EAS054]
Length=164
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/52 (100%), Positives = 52/52 (100%), Gaps = 0/52 (0%)
Query 130 VSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
VSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI
Sbjct 113 VSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 164
>gi|118467883|ref|YP_886960.1| Tat pathway signal sequence domain-containing protein [Mycobacterium
smegmatis str. MC2 155]
gi|118169170|gb|ABK70066.1| Tat (twin-arginine translocation) pathway signal sequence domain
protein [Mycobacterium smegmatis str. MC2 155]
Length=182
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/177 (44%), Positives = 103/177 (59%), Gaps = 16/177 (9%)
Query 11 LTNRPISRRGVLAGGAALAALGVV-SACGESAPKAPAVEELRSPLDQARHDGALAAAAAT 69
LTN ISRR L A L LGV +ACG S P P + +L + LD+AR D ALA+ AA
Sbjct 5 LTN--ISRRRFLYSAAGLTLLGVTATACG-STPPPPELADLTALLDRARADSALASEAAG 61
Query 70 AIGIPPQVAAALTVVATQRTSHARALATEIARAAG----------KLVSATSETSSSSPS 119
A+G A ALT VA +R++HA+AL+ E+ R G ++++ TS + +
Sbjct 62 ALGPQDATARALTAVANERSAHAQALSDELTRMTGEAPPSASPAESSSASSAPTSLAPGA 121
Query 120 PTDPAAPP--PAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
P+A P P DV+ +L SA +A+ + SGYRAGL SIAASCTA+Y VAL
Sbjct 122 SATPSATPSAPTADDVVVALEQSAEQATGIAPRLSGYRAGLAGSIAASCTAAYKVAL 178
>gi|169630219|ref|YP_001703868.1| hypothetical protein MAB_3137 [Mycobacterium abscessus ATCC 19977]
gi|169242186|emb|CAM63214.1| Hypothetical protein MAB_3137 [Mycobacterium abscessus]
Length=156
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/161 (41%), Positives = 91/161 (57%), Gaps = 8/161 (4%)
Query 14 RPISRRGVLAGGAALAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGI 73
R +SRR +L GGAAL V +AC ++ P + L++ +D A D A A AAATA
Sbjct 3 RSLSRRDLLIGGAALGVTAVAAACQQTPDTKPEEDALQAQIDLAVRDAASATAAATA--- 59
Query 74 PPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDV 133
++A AL +A R++H ALA E+ R G + T S+PS T PP+ V
Sbjct 60 NVELAPALNTIAGIRSAHVAALAKELKRIPG-----AAATVRSTPSTTTAPVAPPSADQV 114
Query 134 IDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
+ L+ SA A+ L A SGYRAGLLASI+A+C+ + V L
Sbjct 115 KNQLKDSARAATDLAAKQSGYRAGLLASISAACSCAAEVDL 155
>gi|254819678|ref|ZP_05224679.1| hypothetical protein MintA_07134 [Mycobacterium intracellulare
ATCC 13950]
Length=52
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/52 (77%), Positives = 45/52 (87%), Gaps = 0/52 (0%)
Query 130 VSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALVPSGPSI 181
++DVI++L SA A+RLV T SGYRAGLLASIAASCTASYTVALVP GPSI
Sbjct 1 MADVINALHASADSAARLVGTESGYRAGLLASIAASCTASYTVALVPGGPSI 52
>gi|333991207|ref|YP_004523821.1| hypothetical protein JDM601_2567 [Mycobacterium sp. JDM601]
gi|333487175|gb|AEF36567.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=172
Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/164 (44%), Positives = 93/164 (57%), Gaps = 6/164 (3%)
Query 16 ISRRGVLAGGAALAALGVVS-ACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIP 74
I RR +L+G +A + + + ACG SAP PAV++L + A+HD LA AAA A+
Sbjct 8 IDRRRLLSGAGMVALIALAAPACG-SAPAPPAVDDLEAQRQLAQHDSELATAAAAALTRA 66
Query 75 PQVAAALTVVATQRTSHARA---LATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVS 131
P A A + S RA A A A T+SS+P+ P P P VS
Sbjct 67 PDPDAKALAAALDQVSLERAEHARALAAEIARAARRPAPEATASSTPADV-PDGPAPTVS 125
Query 132 DVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVALV 175
+V+ +LR +A A RL T +GYRAGLLAS+AA+CTASY VALV
Sbjct 126 EVVSALRAAADSAGRLATTATGYRAGLLASVAAACTASYAVALV 169
>gi|315444955|ref|YP_004077834.1| hypothetical protein Mspyr1_33880 [Mycobacterium sp. Spyr1]
gi|315263258|gb|ADT99999.1| hypothetical protein Mspyr1_33880 [Mycobacterium sp. Spyr1]
Length=171
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/125 (50%), Positives = 79/125 (64%), Gaps = 2/125 (1%)
Query 54 LDQARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSET 113
LD+AR DG LAA AT G +A ALT +A QR +HA AL+ EI R G S
Sbjct 46 LDRARSDGDLAAEVAT--GARGTLADALTTIAAQRAAHAEALSEEIVRLTGHAAPTPSTA 103
Query 114 SSSSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVA 173
++S+ + + + P P V DVI +LR SA A+ + +GYRAGLLASIAASCTAS+TVA
Sbjct 104 AASTTTTSAASVPDPTVDDVIGALRASADSATAAAGSLTGYRAGLLASIAASCTASFTVA 163
Query 174 LVPSG 178
L +G
Sbjct 164 LAGAG 168
>gi|145224623|ref|YP_001135301.1| hypothetical protein Mflv_4043 [Mycobacterium gilvum PYR-GCK]
gi|145217109|gb|ABP46513.1| hypothetical protein Mflv_4043 [Mycobacterium gilvum PYR-GCK]
Length=174
Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/125 (50%), Positives = 79/125 (64%), Gaps = 2/125 (1%)
Query 54 LDQARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSET 113
LD+AR DG LAA AT G +A ALT +A QR +HA AL+ EI R G S
Sbjct 49 LDRARSDGDLAAEVAT--GARGTLADALTTIAAQRAAHAEALSEEIVRLTGHAAPTPSTA 106
Query 114 SSSSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVA 173
++S+ + + + P P V DVI +LR SA A+ + +GYRAGLLASIAASCTAS+TVA
Sbjct 107 AASTTTTSAASVPDPTVDDVIGALRASADSATAAAGSLTGYRAGLLASIAASCTASFTVA 166
Query 174 LVPSG 178
L +G
Sbjct 167 LAGAG 171
>gi|120403301|ref|YP_953130.1| hypothetical protein Mvan_2310 [Mycobacterium vanbaalenii PYR-1]
gi|119956119|gb|ABM13124.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=175
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/130 (48%), Positives = 80/130 (62%), Gaps = 6/130 (4%)
Query 54 LDQARHDGALAA-AAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATS- 111
LD+AR D LA AAT G ++A ALT +A QR++HA ALA EI R G+ TS
Sbjct 48 LDRARSDSRLADDVAATTRG---KLADALTGIAAQRSAHAEALAEEIVRMTGRAAPTTSV 104
Query 112 -ETSSSSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASY 170
++ + + T + P P DVI +LRTSA A+ SGYRAGLLASIAA+CTA+Y
Sbjct 105 TSSTGALTTTTTASVPAPTAEDVIGALRTSADSATHAAGALSGYRAGLLASIAAACTAAY 164
Query 171 TVALVPSGPS 180
+V L +G S
Sbjct 165 SVTLAGAGGS 174
>gi|254821855|ref|ZP_05226856.1| hypothetical protein MintA_18117 [Mycobacterium intracellulare
ATCC 13950]
Length=48
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (88%), Gaps = 0/48 (0%)
Query 28 LAALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIGIPP 75
+AALGVVSACG+SAPK P VE+L PLDQARHD ALA+AAA+A+G PP
Sbjct 1 MAALGVVSACGKSAPKPPPVEQLLGPLDQARHDSALASAAASAVGNPP 48
>gi|229491389|ref|ZP_04385213.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321674|gb|EEN87471.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=150
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query 75 PQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVI 134
P +A+LT ++ +RT+HA L EIARAAG + T ++P T A P V +
Sbjct 55 PDKSASLTTISAERTAHALELDAEIARAAGSGAATT-----TAPPSTSVANAPTGVETLS 109
Query 135 DSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
SL SA A+ L T SGYRAGLL SI+ASC+ V L
Sbjct 110 TSLADSARSAADLARTMSGYRAGLLGSISASCSTQVAVLL 149
>gi|262202083|ref|YP_003273291.1| hypothetical protein Gbro_2149 [Gordonia bronchialis DSM 43247]
gi|262085430|gb|ACY21398.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
Length=172
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/166 (38%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query 16 ISRRGVLAGGAAL---AALGVVSACGESAPKAPAVEELRSPLDQARHDGALAAAAATAIG 72
+SRR VL GG A+ AL VSACG+ P P ++ + AR A A
Sbjct 8 LSRRAVLRGGLAVTAGVALAGVSACGDDGPD-PQQLTAQALIPLARTALADETTARGMTA 66
Query 73 IPPQVAAALTVVATQRTSHARALATEIAR----AAGKLVSATSETSSSSPSPTDPAAPPP 128
P +AALTVVA QR +HARAL EI R A +L + S + + +P DP +
Sbjct 67 TNPTYSAALTVVADQRGAHARALREEITRLHRDTAAQLDTPASGSVTPAPGGGDPTS-TM 125
Query 129 AVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
+V + LR SA +A SGY AGL +++AS T+ V L
Sbjct 126 SVDGLRGQLRASARQARDTAVAHSGYPAGLAGAVSASVTSMIEVQL 171
>gi|325676664|ref|ZP_08156339.1| hypothetical protein HMPREF0724_14122 [Rhodococcus equi ATCC
33707]
gi|325552519|gb|EGD22206.1| hypothetical protein HMPREF0724_14122 [Rhodococcus equi ATCC
33707]
Length=193
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/130 (41%), Positives = 70/130 (54%), Gaps = 16/130 (12%)
Query 49 ELRSPLDQARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVS 108
E+ + +QAR AA A I P +AAAL V+A +RT+HA AL EIARAA S
Sbjct 75 EMDALTEQARLARRDAANATATIAGRPDLAAALGVIAAERTAHADALDEEIARAASTPPS 134
Query 109 ATSETSSSSPSPTDPAAPPPAVSDVIDSLR----TSAGEASRLVATTSGYRAGLLASIAA 164
+T+ T ++ P ID LR ++ +A +L T SGYRAGLL SI+A
Sbjct 135 STTTTPPAAAP-----VP-------IDQLRADLASAQRDAGKLARTQSGYRAGLLGSISA 182
Query 165 SCTASYTVAL 174
+C A V L
Sbjct 183 ACAAQQVVLL 192
>gi|312139326|ref|YP_004006662.1| hypothetical protein REQ_19120 [Rhodococcus equi 103S]
gi|311888665|emb|CBH47977.1| hypothetical protein REQ_19120 [Rhodococcus equi 103S]
Length=118
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/122 (42%), Positives = 67/122 (55%), Gaps = 19/122 (15%)
Query 57 ARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSS 116
AR D AA A I P +AAAL V+A +RT+HA AL EIARA ++T +S++
Sbjct 11 ARRD---AANATATIAGRPDLAAALGVIAAERTAHADALDEEIARA-----ASTPPSSTT 62
Query 117 SPSPTDPAAPPPAVSDVIDSLR----TSAGEASRLVATTSGYRAGLLASIAASCTASYTV 172
+ P P ID LR ++ +A +L T SGYRAGLL SI+A+C A V
Sbjct 63 TTPPAAAPVP-------IDQLRADLASAQRDAGKLARTQSGYRAGLLGSISAACAAQQVV 115
Query 173 AL 174
L
Sbjct 116 LL 117
>gi|54026041|ref|YP_120283.1| hypothetical protein nfa40700 [Nocardia farcinica IFM 10152]
gi|54017549|dbj|BAD58919.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=170
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/104 (40%), Positives = 54/104 (52%), Gaps = 13/104 (12%)
Query 75 PQVAAALTVVATQRTSHARALATEIARAAG------------KLVSATSETSSSSPSPTD 122
PQ LT +A QRT HA AL E+AR G + SA + T + P
Sbjct 59 PQRQTTLTTIAAQRTEHADALRAEVARVIGVYGDGTTPVHQTREPSALAATGTPVPGTAQ 118
Query 123 PAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASC 166
PAA PP++ + + L SA A+ +GYRAGLLASI+A+C
Sbjct 119 PAA-PPSLDQLREQLTRSAKAAADAAVVQAGYRAGLLASISAAC 161
>gi|226306115|ref|YP_002766075.1| hypothetical protein RER_26280 [Rhodococcus erythropolis PR4]
gi|226185232|dbj|BAH33336.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=166
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/174 (38%), Positives = 94/174 (55%), Gaps = 23/174 (13%)
Query 11 LTNRPISRRGVLAGGAALAALGV----VSACGES--APKAPAVEELRSPLDQARHDGALA 64
+T P+SRR L AALG +SAC ++ A A V++L + QA + A
Sbjct 5 MTTTPLSRRSALKMTGTAAALGAAAFSLSACTDNGTAEAAAEVDQLTA---QAERARSDA 61
Query 65 AAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPA 124
AAA AI + P +A+LT ++ +RT+HA L EIARA A ++++P P+
Sbjct 62 AAATAAIALAPDKSASLTTISAERTAHALELDAEIARA------AGGGATTTAP----PS 111
Query 125 APPPAVSDVIDSLRTSAGEASR----LVATTSGYRAGLLASIAASCTASYTVAL 174
S +D+LRTS +++R L T SGYRAGLL SI+ASC+ V L
Sbjct 112 TSVANASTGVDTLRTSLNDSARSAADLARTMSGYRAGLLGSISASCSTQVAVLL 165
>gi|111023599|ref|YP_706571.1| hypothetical protein RHA1_ro06640 [Rhodococcus jostii RHA1]
gi|110823129|gb|ABG98413.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=192
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/185 (37%), Positives = 95/185 (52%), Gaps = 21/185 (11%)
Query 6 PVINRLTNRP------ISRRGVLAGGAA----LAALGVVSACGESAPKAPAVEELRSPLD 55
PV+ +RP +SRR L AA +A++ +++ C + A V+ L +
Sbjct 15 PVLMPTVSRPPTSGPAVSRRTALRFAAASAFGVASVSLLAGCADDADSGTEVDSL---VA 71
Query 56 QARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSS 115
Q+R AA AA I + P AAL +V QRT+HA AL EIARAAG T+ T+S
Sbjct 72 QSRLARRDAAGAAATIALLPDRGAALELVRAQRTAHADALDAEIARAAGTYPDGTAPTTS 131
Query 116 SSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVA----TTSGYRAGLLASIAASCTASYT 171
+ P+ T PA +D LR E+ R A T + YRAGL ASI+A+C +Y
Sbjct 132 APPATT---PTAPAPPPGLDQLRADLAESQRSAADSARTLTAYRAGLCASISAAC-GTYL 187
Query 172 VALVP 176
++P
Sbjct 188 AVVLP 192
>gi|343926765|ref|ZP_08766262.1| hypothetical protein GOALK_068_00460 [Gordonia alkanivorans NBRC
16433]
gi|343763364|dbj|GAA13188.1| hypothetical protein GOALK_068_00460 [Gordonia alkanivorans NBRC
16433]
Length=167
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/169 (35%), Positives = 79/169 (47%), Gaps = 8/169 (4%)
Query 8 INRLTNRPISRRGVLAGGAALAALGVV--SACGESAPKAPAVEELRSPLDQARHDGALAA 65
+ L R + R G++AG A+A LG V S C + E PL R A
Sbjct 4 VTTLDRRTVLRGGLVAG-VAVAGLGAVGVSGCSTGPSEETITAERLVPL--VRSALADEK 60
Query 66 AAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAA 125
+A + G P+ AAAL VVA QR HARAL EI R + + E S+ A
Sbjct 61 SARSLAGAEPRYAAALAVVADQRAEHARALREEIIRLDQDVATTVDEPGPSTTP---TPA 117
Query 126 PPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
PP + + L S+GEA + + GY AGL S+AA+ T+ V L
Sbjct 118 EPPTLVGLRAGLEQSSGEARDVAISLPGYPAGLAGSVAAAVTSMREVQL 166
>gi|226366088|ref|YP_002783871.1| hypothetical protein ROP_66790 [Rhodococcus opacus B4]
gi|226244578|dbj|BAH54926.1| hypothetical protein [Rhodococcus opacus B4]
Length=177
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/172 (39%), Positives = 89/172 (52%), Gaps = 21/172 (12%)
Query 16 ISRRGVLAGGAALAALGVVS-------ACGESAPKAPAVEELRSPLDQARHDGALAAAAA 68
+SRR L AA +A GV S A GE A E+ S ++Q+R AA AA
Sbjct 16 VSRRTALRFAAA-SAFGVASVPLLAGCADGEDADT-----EVDSLVEQSRLARRDAAGAA 69
Query 69 TAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPP 128
I + P AAL +V QRT+HA AL EIARAAG ++ T+S+SPS T
Sbjct 70 ATIALLPDRGAALELVRAQRTAHADALDAEIARAAGTYPDGSAPTTSASPSATPTTP--- 126
Query 129 AVSDVIDSLRTSAGEASRLVATT----SGYRAGLLASIAASCTASYTVALVP 176
A ++ LR E+ R A + + YRAGL ASI+A+C +Y ++P
Sbjct 127 APPPGLEQLRADLAESQRSAADSARALTAYRAGLCASISAAC-GTYLAVVLP 177
>gi|333919287|ref|YP_004492868.1| hypothetical protein AS9A_1619 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481508|gb|AEF40068.1| Conserved hypothetical alanine rich protein [Amycolicicoccus
subflavus DQS3-9A1]
Length=319
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/86 (39%), Positives = 46/86 (54%), Gaps = 8/86 (9%)
Query 91 HARALATEIARAAGKLVSATSETSSSSPSPTD---PAAPPPAVSDVIDSLRTSAGEASRL 147
HA AL EI R A + + T+ET P P +PP + + DS R++ G S L
Sbjct 78 HATALDAEIRRLA-RPSTDTAETEDGEDVPDGSAPPVSPPELEAYLADSSRSARGAVSAL 136
Query 148 VATTSGYRAGLLASIAASCTASYTVA 173
+GYRAGLL+S+ A+C A +A
Sbjct 137 ----TGYRAGLLSSVGANCAAYLALA 158
>gi|257055488|ref|YP_003133320.1| hypothetical protein Svir_14530 [Saccharomonospora viridis DSM
43017]
gi|256585360|gb|ACU96493.1| hypothetical protein Svir_14530 [Saccharomonospora viridis DSM
43017]
Length=323
Score = 40.0 bits (92), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/102 (34%), Positives = 48/102 (48%), Gaps = 17/102 (16%)
Query 75 PQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVSDVI 134
P+ A +AT R++HA L E+ R + P DPA P A D I
Sbjct 68 PESADLARELATIRSAHAEVLRMEVER-----------LNRPVPENGDPA--PGATVDGI 114
Query 135 DSLRTSAGEAS----RLVATTSGYRAGLLASIAASCTASYTV 172
D+L T EA RLV + YRAGL+ +++A C A+ +
Sbjct 115 DALWTRIAEAREEALRLVDSVPRYRAGLVGAVSAGCAAAQQL 156
>gi|326382937|ref|ZP_08204627.1| hypothetical protein SCNU_08358 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198527|gb|EGD55711.1| hypothetical protein SCNU_08358 [Gordonia neofelifaecis NRRL
B-59395]
Length=148
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/108 (36%), Positives = 53/108 (50%), Gaps = 12/108 (11%)
Query 70 AIGIPP---QVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAP 126
A G+ P + AL VA QR +H AL EI R L S+T+E +P+ T A+
Sbjct 49 ATGLAPRNTEYTEALKTVADQRGAHLTALRDEINR----LHSSTAE-QIETPAGTPVASV 103
Query 127 PPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
D+ + + +A RL SG+ AGLL S++ASC V L
Sbjct 104 EALRRDIESAAKNAANSCVRL----SGFDAGLLGSVSASCQTLAKVQL 147
>gi|296139425|ref|YP_003646668.1| hypothetical protein Tpau_1711 [Tsukamurella paurometabola DSM
20162]
gi|296027559|gb|ADG78329.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=169
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/96 (36%), Positives = 49/96 (52%), Gaps = 9/96 (9%)
Query 81 LTVVATQRTSHARALATEIARAAGKLVSATSETSSSSPSPTDPAAPPPAVS--DVIDSLR 138
+ ++A QR HA AL+ E++R L + TS T P+PT AP +V+ + L
Sbjct 80 MRLIADQRGQHASALSDELSR---YLRTPTSVT----PAPTSSPAPAGSVNRQNFAAQLA 132
Query 139 TSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
SA +A SGY+A LL S+AA+ V L
Sbjct 133 RSAKDAGDAAVAASGYQAALLGSVAAATRVHAEVVL 168
>gi|331698438|ref|YP_004334677.1| hypothetical protein Psed_4677 [Pseudonocardia dioxanivorans
CB1190]
gi|326953127|gb|AEA26824.1| hypothetical protein Psed_4677 [Pseudonocardia dioxanivorans
CB1190]
Length=169
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/119 (38%), Positives = 59/119 (50%), Gaps = 8/119 (6%)
Query 56 QARHDGALAAAAATAIGIPPQVAAALTVVATQRTSHARALATEIARAAGKLVSATSETSS 115
QAR D L A TA P + LT T R HA AL E+AR AG ++ + +S
Sbjct 58 QARDDVDLITATVTAA---PALGDRLTPARTARADHAAALEAEVARVAGGTPASAAPATS 114
Query 116 SSPSPTDPAAPPPAVSDVIDSLRTSAGEASRLVATTSGYRAGLLASIAASCTASYTVAL 174
+ +P PA V D+LR SA A++LV T R GL+A + A C A+Y L
Sbjct 115 APANPATPA----TTKAVTDALRASAEAAAKLVPTMEAARVGLVAGVVACC-ATYAEVL 168
Lambda K H
0.311 0.122 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 165240920448
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40