BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2862A

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|253798049|ref|YP_003031050.1|  antitoxin [Mycobacterium tuberc...   159    2e-37
gi|15842405|ref|NP_337442.1|  hypothetical protein MT2931 [Mycoba...   128    2e-28
gi|298293362|ref|YP_003695301.1|  hypothetical protein Snov_3408 ...  33.9    8.9  


>gi|253798049|ref|YP_003031050.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|308371160|ref|ZP_07424016.2| antitoxin [Mycobacterium tuberculosis SUMu003]
 gi|308372281|ref|ZP_07428056.2| antitoxin [Mycobacterium tuberculosis SUMu004]
 12 more sequence titles
 Length=82

 Score =  159 bits (401),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 81/82 (99%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   ILSDEEREAFRQQAAAQQMSLSNWLRQAGLRQLEAQRQRPLRTAQELREFFASRPDETGA  60
           +LSDEEREAFRQQAAAQQMSLSNWLRQAGLRQLEAQRQRPLRTAQELREFFASRPDETGA
Sbjct  1   MLSDEEREAFRQQAAAQQMSLSNWLRQAGLRQLEAQRQRPLRTAQELREFFASRPDETGA  60

Query  61  EPDWQAHLQVMAESRRRGLPAP  82
           EPDWQAHLQVMAESRRRGLPAP
Sbjct  61  EPDWQAHLQVMAESRRRGLPAP  82


>gi|15842405|ref|NP_337442.1| hypothetical protein MT2931 [Mycobacterium tuberculosis CDC1551]
 gi|167969491|ref|ZP_02551768.1| hypothetical protein MtubH3_16281 [Mycobacterium tuberculosis 
H37Ra]
 gi|254551931|ref|ZP_05142378.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 24 more sequence titles
 Length=64

 Score =  128 bits (322),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)

Query  19  MSLSNWLRQAGLRQLEAQRQRPLRTAQELREFFASRPDETGAEPDWQAHLQVMAESRRRG  78
           MSLSNWLRQAGLRQLEAQRQRPLRTAQELREFFASRPDETGAEPDWQAHLQVMAESRRRG
Sbjct  1   MSLSNWLRQAGLRQLEAQRQRPLRTAQELREFFASRPDETGAEPDWQAHLQVMAESRRRG  60

Query  79  LPAP  82
           LPAP
Sbjct  61  LPAP  64


>gi|298293362|ref|YP_003695301.1| hypothetical protein Snov_3408 [Starkeya novella DSM 506]
 gi|296929873|gb|ADH90682.1| conserved hypothetical protein [Starkeya novella DSM 506]
Length=944

 Score = 33.9 bits (76),  Expect = 8.9, Method: Compositional matrix adjust.
 Identities = 21/56 (38%), Positives = 31/56 (56%), Gaps = 3/56 (5%)

Query  30   LRQLEAQRQRPLRTAQELREFFASRPDETGAEPDWQAHLQVMAESRRR---GLPAP  82
            L +L+ + + P R A  L +  ASRPD+  A   W+AH+  M+    R   GLP+P
Sbjct  118  LSRLDRESRMPHRPATALADHLASRPDDPVAAALWRAHISRMSGQLGRLRAGLPSP  173



Lambda     K      H
   0.317    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127967590486


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40