BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2863

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610000|ref|NP_217379.1|  hypothetical protein Rv2863 [Mycoba...   259    1e-67
gi|340627856|ref|YP_004746308.1|  hypothetical protein MCAN_28851...   257    3e-67
gi|15608975|ref|NP_216354.1|  hypothetical protein Rv1838c [Mycob...  90.9    5e-17
gi|289447452|ref|ZP_06437196.1|  toxin [Mycobacterium tuberculosi...  89.7    1e-16
gi|340626846|ref|YP_004745298.1|  hypothetical protein MCAN_18531...  89.0    2e-16
gi|254168119|ref|ZP_04874966.1|  hypothetical protein ABOONEI_736...  65.9    2e-09
gi|254167943|ref|ZP_04874791.1|  hypothetical protein ABOONEI_90 ...  65.9    2e-09
gi|258593755|emb|CBE70096.1|  conserved protein of unknown functi...  58.9    2e-07
gi|225181869|ref|ZP_03735305.1|  PilT protein domain protein [Det...  43.9    0.007
gi|15607801|ref|NP_215175.1|  hypothetical protein Rv0661c [Mycob...  42.4    0.024
gi|323357846|ref|YP_004224242.1|  nucleic acid-binding protein [M...  41.2    0.052
gi|256824109|ref|YP_003148069.1|  nucleic acid-binding protein [K...  40.8    0.072
gi|333989224|ref|YP_004521838.1|  hypothetical protein JDM601_058...  40.0    0.11 
gi|284047180|ref|YP_003397520.1|  PilT protein domain protein [Co...  39.3    0.20 
gi|88603396|ref|YP_503574.1|  PilT protein-like protein [Methanos...  38.9    0.25 
gi|167967493|ref|ZP_02549770.1|  hypothetical protein MtubH3_0543...  38.5    0.31 
gi|292491927|ref|YP_003527366.1|  PilT domain-containing protein ...  37.7    0.54 
gi|147679127|ref|YP_001213342.1|  nucleic acid-binding protein [P...  37.7    0.64 
gi|328870290|gb|EGG18665.1|  ankyrin repeat-containing protein [D...  37.0    0.95 
gi|116624725|ref|YP_826881.1|  PilT domain-containing protein [Ca...  37.0    1.0  
gi|330507575|ref|YP_004384003.1|  PIN domain-containing protein [...  37.0    1.1  
gi|297526892|ref|YP_003668916.1|  PilT protein domain-containing ...  37.0    1.1  
gi|299137106|ref|ZP_07030289.1|  conserved hypothetical protein [...  36.6    1.2  
gi|344340185|ref|ZP_08771111.1|  PilT protein domain protein [Thi...  36.6    1.4  
gi|345131456|gb|EGW62358.1|  glycosyl transferase group 1 [Dechlo...  36.2    1.9  
gi|331214835|ref|XP_003320098.1|  SCY1 protein kinase [Puccinia g...  35.4    3.0  
gi|88810685|ref|ZP_01125942.1|  PIN domain protein [Nitrococcus m...  33.9    9.4  


>gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycobacterium tuberculosis H37Rv]
 gi|15842406|ref|NP_337443.1| hypothetical protein MT2932 [Mycobacterium tuberculosis CDC1551]
 gi|31794040|ref|NP_856533.1| hypothetical protein Mb2888 [Mycobacterium bovis AF2122/97]
 79 more sequence titles
 Length=126

 Score =  259 bits (661),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL
Sbjct  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60

Query  61   DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL  120
            DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL
Sbjct  61   DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL  120

Query  121  ASAFRS  126
            ASAFRS
Sbjct  121  ASAFRS  126


>gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851 [Mycobacterium canettii CIPT 
140010059]
 gi|340006046|emb|CCC45216.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=126

 Score =  257 bits (657),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 125/126 (99%), Positives = 125/126 (99%), Gaps = 0/126 (0%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAE MQELLNAYVPVGRNSTL
Sbjct  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEVMQELLNAYVPVGRNSTL  60

Query  61   DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL  120
            DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL
Sbjct  61   DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL  120

Query  121  ASAFRS  126
            ASAFRS
Sbjct  121  ASAFRS  126


>gi|15608975|ref|NP_216354.1| hypothetical protein Rv1838c [Mycobacterium tuberculosis H37Rv]
 gi|15841306|ref|NP_336343.1| hypothetical protein MT1886 [Mycobacterium tuberculosis CDC1551]
 gi|31793028|ref|NP_855521.1| hypothetical protein Mb1869c [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=131

 Score = 90.9 bits (224),  Expect = 5e-17, Method: Compositional matrix adjust.
 Identities = 48/123 (40%), Positives = 70/123 (57%), Gaps = 1/123 (0%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            MI VD+N+ MY VG  HP ++ A+  LE +L   +RLVT AE +QE+ + YV + R   +
Sbjct  1    MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI  60

Query  61   DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT  119
              A   ++  + E+ P+E  DV HAR    R+  L ARD LH+A      +TR+ +FD  
Sbjct  61   QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG  120

Query  120  LAS  122
              S
Sbjct  121  FDS  123


>gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosis CPHL_A]
 gi|289420410|gb|EFD17611.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=131

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 48/123 (40%), Positives = 69/123 (57%), Gaps = 1/123 (0%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            MI VD+N+ MY VG  HP ++ A+  LE +L   +RLVT AE +QE+ + YV + R   +
Sbjct  1    MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI  60

Query  61   DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT  119
              A    +  + E+ P+E  DV HAR    R+  L ARD LH+A      +TR+ +FD  
Sbjct  61   QPAFDATIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG  120

Query  120  LAS  122
              S
Sbjct  121  FDS  123


>gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531 [Mycobacterium canettii CIPT 
140010059]
 gi|340005036|emb|CCC44185.1| conserved hypothetical [Mycobacterium canettii CIPT 140010059]
Length=131

 Score = 89.0 bits (219),  Expect = 2e-16, Method: Compositional matrix adjust.
 Identities = 47/123 (39%), Positives = 70/123 (57%), Gaps = 1/123 (0%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            MI VD+N+ MY VG  HP ++ A+  LE +L   +RLVT AE +QE+ + YV + R   +
Sbjct  1    MILVDSNIPMYLVGAPHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI  60

Query  61   DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT  119
              A   ++  + E+ P+E  DV HAR    R+  L ARD LH+A      +T++ +FD  
Sbjct  61   QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITQLMSFDRG  120

Query  120  LAS  122
              S
Sbjct  121  FDS  123


>gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
 gi|197622885|gb|EDY35453.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
Length=141

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 32/118 (28%), Positives = 64/118 (55%), Gaps = 2/118 (1%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVG-RNST  59
            MIF+DT++FMYA G++HP + P+ + L+     +   V + E +QE+ + Y  +  +   
Sbjct  1    MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG  60

Query  60   LDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFD  117
            +  A  ++  +  I+ +E +D   A  +  R+  + +RD +H+A    R +  + T+D
Sbjct  61   IQLAKNIISLVPRIYSIEISDAIRAMDILERY-DITSRDAIHIAFMLNRNIKEVCTYD  117


>gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
 gi|289595943|ref|YP_003482639.1| PilT protein domain protein [Aciduliprofundum boonei T469]
 gi|197622986|gb|EDY35553.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
 gi|289533730|gb|ADD08077.1| PilT protein domain protein [Aciduliprofundum boonei T469]
Length=141

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 32/118 (28%), Positives = 64/118 (55%), Gaps = 2/118 (1%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVG-RNST  59
            MIF+DT++FMYA G++HP + P+ + L+     +   V + E +QE+ + Y  +  +   
Sbjct  1    MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG  60

Query  60   LDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFD  117
            +  A  ++  +  I+ +E +D   A  +  R+  + +RD +H+A    R +  + T+D
Sbjct  61   IQLAKNIISLVPRIYSIEISDAIRAMDILERY-DITSRDAIHMAFMLNRNIKEVCTYD  117


>gi|258593755|emb|CBE70096.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=143

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 39/118 (34%), Positives = 60/118 (51%), Gaps = 3/118 (2%)

Query  3    FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAY--VPVGRNSTL  60
            F+DTN+FMYA GR+HP++ P    L      +   +T+AE +QE+L  Y  +  G     
Sbjct  4    FLDTNIFMYAAGREHPMKGPCVAILRRVALDELEALTNAEVLQEILYRYRAIEEGERGLH  63

Query  61   DSALTLVRALTEIWPVEAADVAHARTLHHRHPGL-GARDLLHLACCQRRGVTRIKTFD  117
             + L + +   EI PV  AD+  A  L  R+  +  +RD +H A     G+  I + D
Sbjct  64   LARLAVDQVGGEILPVTLADMQRAFDLVARYRAMITSRDAVHAATALNHGLKHIISVD  121


>gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167453|gb|EEG76268.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
Length=140

 Score = 43.9 bits (102),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 33/123 (27%), Positives = 53/123 (44%), Gaps = 10/123 (8%)

Query  2    IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLD  61
            +F+DTN+ MYA  ++H  +    E L           T  E  QE++  Y  + +    D
Sbjct  3    VFIDTNIPMYAASKEHHFKASCVEILRSVAAGHLNAFTDTEVFQEIMYRYFSINQR---D  59

Query  62   SALTLVRALTEIW-----PVEAADVAHARTL--HHRHPGLGARDLLHLACCQRRGVTRIK  114
              L +  + ++I       +E  D+  AR L  +  +  L  RD +HLA      + RI 
Sbjct  60   FGLRVFDSFSKIMDGSVLAIEHQDMLLARKLISNPTYSALSPRDTIHLAVMLNHRIKRII  119

Query  115  TFD  117
            T D
Sbjct  120  TAD  122


>gi|15607801|ref|NP_215175.1| hypothetical protein Rv0661c [Mycobacterium tuberculosis H37Rv]
 gi|15840064|ref|NP_335101.1| hypothetical protein MT0690 [Mycobacterium tuberculosis CDC1551]
 gi|31791845|ref|NP_854338.1| hypothetical protein Mb0680c [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=145

 Score = 42.4 bits (98),  Expect = 0.024, Method: Compositional matrix adjust.
 Identities = 19/48 (40%), Positives = 29/48 (61%), Gaps = 0/48 (0%)

Query  1   MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL  48
           MI +DT V +YA G +HPLR P R+ +    + +    T+AE +QE +
Sbjct  1   MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV  48


>gi|323357846|ref|YP_004224242.1| nucleic acid-binding protein [Microbacterium testaceum StLB037]
 gi|323274217|dbj|BAJ74362.1| predicted nucleic acid-binding protein [Microbacterium testaceum 
StLB037]
Length=131

 Score = 41.2 bits (95),  Expect = 0.052, Method: Compositional matrix adjust.
 Identities = 41/125 (33%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            MI+VD+ + +YAV RD  +   AR  L    E ++ + TS  A+ E L   V   R++  
Sbjct  1    MIYVDSCLVIYAVERDDHVGERARSALA---EAEEPIATSPLAVLESL---VGPMRDADA  54

Query  61   DSALTLVRALT--EIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDH  118
            ++ L +  A    E+ PVE      A  L  R+ GL   D LHL   ++ G T   T D 
Sbjct  55   EAQLRMWTAFDAFELLPVEPDAYLDAALLRARYRGLRTADALHLGIARQAGCTAFWTNDA  114

Query  119  TLASA  123
             L +A
Sbjct  115  RLHAA  119


>gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
 gi|256687502|gb|ACV05304.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus 
sedentarius DSM 20547]
Length=137

 Score = 40.8 bits (94),  Expect = 0.072, Method: Compositional matrix adjust.
 Identities = 18/47 (39%), Positives = 28/47 (60%), Gaps = 0/47 (0%)

Query  2   IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL  48
           +F+D+ + ++A G DH +R P+R +LE +      L  S EA QE L
Sbjct  4   VFIDSTILLHAAGGDHAMRAPSRRWLEAAASGGMALHASVEAGQEFL  50


>gi|333989224|ref|YP_004521838.1| hypothetical protein JDM601_0584 [Mycobacterium sp. JDM601]
 gi|333485192|gb|AEF34584.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143

 Score = 40.0 bits (92),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 29/110 (27%), Positives = 45/110 (41%), Gaps = 1/110 (0%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYV-PVGRNST  59
            MI +DT V +YA G DH  R P R+ +      +    T+ E +QE ++      GRN  
Sbjct  1    MIVLDTTVLVYAKGADHRFREPCRDLIAAVAADRIEATTTPEVIQEFVHIRARRRGRNDA  60

Query  60   LDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRG  109
                 +    L  +  V    +    T+    P +GA D +  A  +  G
Sbjct  61   ATLGRSYAELLAPLLTVAGDHLERGLTMFETTPSVGAVDSVLAAVAKSAG  110


>gi|284047180|ref|YP_003397520.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
 gi|283951401|gb|ADB54145.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=141

 Score = 39.3 bits (90),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 41/124 (34%), Positives = 55/124 (45%), Gaps = 16/124 (12%)

Query  3    FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLDS  62
            FVD NV +Y+V  D   +      LE   +  D   TSA A++E+ +    + RN  L  
Sbjct  4    FVDANVIVYSV-TDCVQQEACARLLEAIAKGADGR-TSASALEEVWH----LERNGRLGG  57

Query  63   ALTLV----RALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRI----K  114
               +     R LT + PV   D A A  L    P LGA D +H+  C   G+  I    K
Sbjct  58   QTGVAEGAHRMLTPLVPV--TDEAFALALTVEAPRLGASDRIHVGTCLAHGIGTIVTADK  115

Query  115  TFDH  118
             FDH
Sbjct  116  GFDH  119


>gi|88603396|ref|YP_503574.1| PilT protein-like protein [Methanospirillum hungatei JF-1]
 gi|88188858|gb|ABD41855.1| PilT protein-like protein [Methanospirillum hungatei JF-1]
Length=136

 Score = 38.9 bits (89),  Expect = 0.25, Method: Compositional matrix adjust.
 Identities = 33/122 (28%), Positives = 55/122 (46%), Gaps = 9/122 (7%)

Query  1    MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYV-PVGRNST  59
            M ++D+N F+YAV  D P     R  L H +E +    TS     E++   +  + R   
Sbjct  1    MNYIDSNFFIYAVASDTPEGRWCRSTLSHIMEGEFIACTSTLTWDEIVYVLMKKINREIA  60

Query  60   LDSA---LTLVRA-LTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKT  115
            L+ +   L+L      ++ P E   +AH+    +    +  RD +H AC   +G+  I T
Sbjct  61   LECSEYFLSLPNVHYIDVSP-EILKLAHSIMTQY---AMKPRDAIHAACMSHQGINTIIT  116

Query  116  FD  117
             D
Sbjct  117  ED  118


>gi|167967493|ref|ZP_02549770.1| hypothetical protein MtubH3_05437 [Mycobacterium tuberculosis 
H37Ra]
 gi|254549621|ref|ZP_05140068.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|339293694|gb|AEJ45805.1| hypothetical protein CCDC5079_0615 [Mycobacterium tuberculosis 
CCDC5079]
 gi|339297334|gb|AEJ49444.1| hypothetical protein CCDC5180_0607 [Mycobacterium tuberculosis 
CCDC5180]
Length=143

 Score = 38.5 bits (88),  Expect = 0.31, Method: Compositional matrix adjust.
 Identities = 17/46 (37%), Positives = 27/46 (59%), Gaps = 0/46 (0%)

Query  3   FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL  48
            +DT V +YA G +HPLR P R+ +    + +    T+AE +QE +
Sbjct  1   MLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV  46


>gi|292491927|ref|YP_003527366.1| PilT domain-containing protein [Nitrosococcus halophilus Nc4]
 gi|291580522|gb|ADE14979.1| PilT domain-containing protein [Nitrosococcus halophilus Nc4]
Length=139

 Score = 37.7 bits (86),  Expect = 0.54, Method: Compositional matrix adjust.
 Identities = 36/122 (30%), Positives = 55/122 (46%), Gaps = 12/122 (9%)

Query  3    FVDTNVFMYAVGRDHPLR-MPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLD  61
            F+DTNV +YA   D   + + A   ++   E ++ L+ S + +QE    YV V R   + 
Sbjct  6    FIDTNVLIYAYDLDAGAKHLKAASIVKTCWEQRNGLI-STQVLQEF---YVNVTRKIPMP  61

Query  62   SALTLVRALT---EIWPV---EAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKT  115
              L   R +    E WP+   E +DV  A  L  R+  L   D L +A   +   T + T
Sbjct  62   VPLAKARGVLNTYEAWPIIVNELSDVLFASELQERYQ-LSFWDALIVAAAHKGRATVLLT  120

Query  116  FD  117
             D
Sbjct  121  ED  122


>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum 
SI]
 gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum 
SI]
Length=145

 Score = 37.7 bits (86),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 28/82 (35%), Positives = 39/82 (48%), Gaps = 9/82 (10%)

Query  1   MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVP------V  54
           MI  DTNV +YA+  D P    +R+F+E     Q + + S   +Q LL  Y        V
Sbjct  1   MILTDTNVLVYAINTDAPQHTASRKFVEAV---QQKNIDSVLPVQVLLEFYAIVTDHRRV  57

Query  55  GRNSTLDSALTLVRALTEIWPV  76
            R    ++A   V AL  I+PV
Sbjct  58  TRPLEPETAWKQVNALRAIFPV  79


>gi|328870290|gb|EGG18665.1| ankyrin repeat-containing protein [Dictyostelium fasciculatum]
Length=680

 Score = 37.0 bits (84),  Expect = 0.95, Method: Composition-based stats.
 Identities = 24/78 (31%), Positives = 41/78 (53%), Gaps = 3/78 (3%)

Query  25   EFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLDSALTLVRALTEIWPVEAADVAHA  84
            EF++H L ++D ++     +  +++ Y    RN+TLD+ L L+    E  P +  D AH 
Sbjct  161  EFIKHYLPNKDNVLLQRRMI--VISQYC-AHRNATLDTLLKLLEWSPEYDPQDQFDSAHH  217

Query  85   RTLHHRHPGLGARDLLHL  102
            + L +     G RD+L L
Sbjct  218  QNLFYNVSAQGHRDILEL  235


>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus 
Ellin6076]
 gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142

 Score = 37.0 bits (84),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 17/48 (36%), Positives = 26/48 (55%), Gaps = 0/48 (0%)

Query  1   MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL  48
           M  +D N+ +YAV +D PL   AR++LE +L   + L  S   +   L
Sbjct  1   MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFL  48


>gi|330507575|ref|YP_004384003.1| PIN domain-containing protein [Methanosaeta concilii GP6]
 gi|328928383|gb|AEB68185.1| PIN domain protein, putative [Methanosaeta concilii GP6]
Length=168

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 32/143 (23%), Positives = 55/143 (39%), Gaps = 27/143 (18%)

Query  2    IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNST--  59
            IF+DTN+F+Y        R   R FL++         TSA  + E+++  +      T  
Sbjct  14   IFIDTNIFLYGALDYTKYRATCRAFLQNIESGTYFAATSALVLNEIIHKLILAETTKTYH  73

Query  60   ----------LDSALTLVRALTEIW--------------PVEAADVAHARTLHHRHPGLG  95
                      ++     + +L  +W               ++ A +  A  L  R+ GL 
Sbjct  74   LRSESEARKLIEDKSETISSLARVWKTYAVIRAYPLVIHSIDKATMDMATDLSSRY-GLF  132

Query  96   ARDLLHLACCQRRGVTRIKTFDH  118
              D  HLA  +  G++ I T D+
Sbjct  133  ISDASHLAVMKMNGISNIATNDN  155


>gi|297526892|ref|YP_003668916.1| PilT protein domain-containing protein [Staphylothermus hellenicus 
DSM 12710]
 gi|297255808|gb|ADI32017.1| PilT protein domain protein [Staphylothermus hellenicus DSM 12710]
Length=139

 Score = 37.0 bits (84),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 40/131 (31%), Positives = 61/131 (47%), Gaps = 17/131 (12%)

Query  3    FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDR--LVTSAEAMQELLNAYVPV-GRN--  57
            +VD N+F+Y + +       ARE++   +EH  R   +TSA  + EL      + G+N  
Sbjct  6    YVDVNIFVYWLAKHPEYGEKAREWIRR-IEHSRRGEYITSALTLYELAVILSGLTGKNLR  64

Query  58   -----STLDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTR  112
                  T+  A+T + +L E+  ++  D   A  L  +H  L   D LHLA   R   T+
Sbjct  65   EERLVKTIIDAVTKLPSL-EVVALKWEDHVRALELMQKH-SLDYEDSLHLATALRSKATK  122

Query  113  I----KTFDHT  119
            I    K FD T
Sbjct  123  IISNNKDFDKT  133


>gi|299137106|ref|ZP_07030289.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
 gi|298601621|gb|EFI57776.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
Length=141

 Score = 36.6 bits (83),  Expect = 1.2, Method: Compositional matrix adjust.
 Identities = 37/127 (30%), Positives = 52/127 (41%), Gaps = 12/127 (9%)

Query  2    IFVDTNVFMYAVGRDHPLRMP-AREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL  60
            +F D  +F+Y V  +HP      R  L+ S E  D+L TS  A+ E+L         S  
Sbjct  4    VFWDAMLFIYLV-ENHPQYFKRCRYLLQRSFERGDKLYTSHLALGEVLAG----AEKSPF  58

Query  61   DSALTLVRALTE-----IWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKT  115
             S    ++A+ E       P +A  V     L  +   L   D +HLAC    G+    T
Sbjct  59   PSKSKAIQAVAEEMGFTGLPFDAGAVPTFADLRAKRK-LKIADSIHLACAASAGMDLFLT  117

Query  116  FDHTLAS  122
             D  LA 
Sbjct  118  GDAQLAG  124


>gi|344340185|ref|ZP_08771111.1| PilT protein domain protein [Thiocapsa marina 5811]
 gi|343799843|gb|EGV17791.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=144

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 40/72 (56%), Gaps = 6/72 (8%)

Query  57   NSTLDSALTLVRALT----EIWPVEAADVAHARTLH-HRHPGLGARDLLHLACCQRRGVT  111
             S  ++ALT+ R  +    ++  +E+AD   A  +  H    L A D LHLA C+R G T
Sbjct  60   TSEQNAALTMFRRFSALRLDVVNIESADFDVAAEMSGHSGVALRAGDALHLAVCRRLG-T  118

Query  112  RIKTFDHTLASA  123
            R+ TFD  LA+A
Sbjct  119  RLATFDAGLAAA  130


>gi|345131456|gb|EGW62358.1| glycosyl transferase group 1 [Dechlorosoma suillum PS]
Length=414

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/55 (35%), Positives = 28/55 (51%), Gaps = 0/55 (0%)

Query  32   EHQDRLVTSAEAMQELLNAYVPVGRNSTLDSALTLVRALTEIWPVEAADVAHART  86
            +H      S  A++E+L A VP+   + L   L   RALT +W ++  DV H  T
Sbjct  65   QHAQERPASGHALEEVLAAGVPIPSYAGLKLGLPAKRALTRLWSLQRPDVVHVVT  119


>gi|331214835|ref|XP_003320098.1| SCY1 protein kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309299088|gb|EFP75679.1| SCY1 protein kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length=966

 Score = 35.4 bits (80),  Expect = 3.0, Method: Composition-based stats.
 Identities = 20/60 (34%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query  16   DHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAY---VPVGRNSTLDSALTLVRALTE  72
            D  +R+   E L H ++H DR V   +    LL  +   VP+ R +T+ S L L   L+E
Sbjct  495  DRAIRLSLLELLPHYVDHLDRSVVVEKIWPSLLTGFTDTVPIIREATVKSVLLLAPKLSE  554


>gi|88810685|ref|ZP_01125942.1| PIN domain protein [Nitrococcus mobilis Nb-231]
 gi|88792315|gb|EAR23425.1| PIN domain protein [Nitrococcus mobilis Nb-231]
Length=135

 Score = 33.9 bits (76),  Expect = 9.4, Method: Compositional matrix adjust.
 Identities = 16/48 (34%), Positives = 25/48 (53%), Gaps = 0/48 (0%)

Query  2   IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLN  49
           +FVDTNV +Y+V    P +  A   +   L     +VTS + ++E  N
Sbjct  4   VFVDTNVLVYSVDPSEPSKRDASRRILLELARTGEIVTSTQVLKEFYN  51



Lambda     K      H
   0.326    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129836892488


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40