BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2863
Length=126
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycoba... 259 1e-67
gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851... 257 3e-67
gi|15608975|ref|NP_216354.1| hypothetical protein Rv1838c [Mycob... 90.9 5e-17
gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosi... 89.7 1e-16
gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531... 89.0 2e-16
gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736... 65.9 2e-09
gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 ... 65.9 2e-09
gi|258593755|emb|CBE70096.1| conserved protein of unknown functi... 58.9 2e-07
gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Det... 43.9 0.007
gi|15607801|ref|NP_215175.1| hypothetical protein Rv0661c [Mycob... 42.4 0.024
gi|323357846|ref|YP_004224242.1| nucleic acid-binding protein [M... 41.2 0.052
gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [K... 40.8 0.072
gi|333989224|ref|YP_004521838.1| hypothetical protein JDM601_058... 40.0 0.11
gi|284047180|ref|YP_003397520.1| PilT protein domain protein [Co... 39.3 0.20
gi|88603396|ref|YP_503574.1| PilT protein-like protein [Methanos... 38.9 0.25
gi|167967493|ref|ZP_02549770.1| hypothetical protein MtubH3_0543... 38.5 0.31
gi|292491927|ref|YP_003527366.1| PilT domain-containing protein ... 37.7 0.54
gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [P... 37.7 0.64
gi|328870290|gb|EGG18665.1| ankyrin repeat-containing protein [D... 37.0 0.95
gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Ca... 37.0 1.0
gi|330507575|ref|YP_004384003.1| PIN domain-containing protein [... 37.0 1.1
gi|297526892|ref|YP_003668916.1| PilT protein domain-containing ... 37.0 1.1
gi|299137106|ref|ZP_07030289.1| conserved hypothetical protein [... 36.6 1.2
gi|344340185|ref|ZP_08771111.1| PilT protein domain protein [Thi... 36.6 1.4
gi|345131456|gb|EGW62358.1| glycosyl transferase group 1 [Dechlo... 36.2 1.9
gi|331214835|ref|XP_003320098.1| SCY1 protein kinase [Puccinia g... 35.4 3.0
gi|88810685|ref|ZP_01125942.1| PIN domain protein [Nitrococcus m... 33.9 9.4
>gi|15610000|ref|NP_217379.1| hypothetical protein Rv2863 [Mycobacterium tuberculosis H37Rv]
gi|15842406|ref|NP_337443.1| hypothetical protein MT2932 [Mycobacterium tuberculosis CDC1551]
gi|31794040|ref|NP_856533.1| hypothetical protein Mb2888 [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=126
Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/126 (100%), Positives = 126/126 (100%), Gaps = 0/126 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL
Sbjct 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
Query 61 DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL 120
DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL
Sbjct 61 DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL 120
Query 121 ASAFRS 126
ASAFRS
Sbjct 121 ASAFRS 126
>gi|340627856|ref|YP_004746308.1| hypothetical protein MCAN_28851 [Mycobacterium canettii CIPT
140010059]
gi|340006046|emb|CCC45216.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=126
Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/126 (99%), Positives = 125/126 (99%), Gaps = 0/126 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAE MQELLNAYVPVGRNSTL
Sbjct 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEVMQELLNAYVPVGRNSTL 60
Query 61 DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL 120
DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL
Sbjct 61 DSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHTL 120
Query 121 ASAFRS 126
ASAFRS
Sbjct 121 ASAFRS 126
>gi|15608975|ref|NP_216354.1| hypothetical protein Rv1838c [Mycobacterium tuberculosis H37Rv]
gi|15841306|ref|NP_336343.1| hypothetical protein MT1886 [Mycobacterium tuberculosis CDC1551]
gi|31793028|ref|NP_855521.1| hypothetical protein Mb1869c [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=131
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 70/123 (57%), Gaps = 1/123 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
MI VD+N+ MY VG HP ++ A+ LE +L +RLVT AE +QE+ + YV + R +
Sbjct 1 MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
Query 61 DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT 119
A ++ + E+ P+E DV HAR R+ L ARD LH+A +TR+ +FD
Sbjct 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
Query 120 LAS 122
S
Sbjct 121 FDS 123
>gi|289447452|ref|ZP_06437196.1| toxin [Mycobacterium tuberculosis CPHL_A]
gi|289420410|gb|EFD17611.1| toxin [Mycobacterium tuberculosis CPHL_A]
Length=131
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/123 (40%), Positives = 69/123 (57%), Gaps = 1/123 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
MI VD+N+ MY VG HP ++ A+ LE +L +RLVT AE +QE+ + YV + R +
Sbjct 1 MILVDSNIPMYLVGASHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
Query 61 DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT 119
A + + E+ P+E DV HAR R+ L ARD LH+A +TR+ +FD
Sbjct 61 QPAFDATIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITRLMSFDRG 120
Query 120 LAS 122
S
Sbjct 121 FDS 123
>gi|340626846|ref|YP_004745298.1| hypothetical protein MCAN_18531 [Mycobacterium canettii CIPT
140010059]
gi|340005036|emb|CCC44185.1| conserved hypothetical [Mycobacterium canettii CIPT 140010059]
Length=131
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (39%), Positives = 70/123 (57%), Gaps = 1/123 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
MI VD+N+ MY VG HP ++ A+ LE +L +RLVT AE +QE+ + YV + R +
Sbjct 1 MILVDSNIPMYLVGAPHPHKLDAQRLLESALSGGERLVTDAEVLQEICHRYVAIKRREAI 60
Query 61 DSAL-TLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDHT 119
A ++ + E+ P+E DV HAR R+ L ARD LH+A +T++ +FD
Sbjct 61 QPAFDAIIGVVDEVLPIERTDVEHARDALLRYQTLSARDALHIAVMAHHDITQLMSFDRG 120
Query 120 LAS 122
S
Sbjct 121 FDS 123
>gi|254168119|ref|ZP_04874966.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
gi|197622885|gb|EDY35453.1| hypothetical protein ABOONEI_736 [Aciduliprofundum boonei T469]
Length=141
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/118 (28%), Positives = 64/118 (55%), Gaps = 2/118 (1%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVG-RNST 59
MIF+DT++FMYA G++HP + P+ + L+ + V + E +QE+ + Y + +
Sbjct 1 MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG 60
Query 60 LDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFD 117
+ A ++ + I+ +E +D A + R+ + +RD +H+A R + + T+D
Sbjct 61 IQLAKNIISLVPRIYSIEISDAIRAMDILERY-DITSRDAIHIAFMLNRNIKEVCTYD 117
>gi|254167943|ref|ZP_04874791.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
gi|289595943|ref|YP_003482639.1| PilT protein domain protein [Aciduliprofundum boonei T469]
gi|197622986|gb|EDY35553.1| hypothetical protein ABOONEI_90 [Aciduliprofundum boonei T469]
gi|289533730|gb|ADD08077.1| PilT protein domain protein [Aciduliprofundum boonei T469]
Length=141
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/118 (28%), Positives = 64/118 (55%), Gaps = 2/118 (1%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVG-RNST 59
MIF+DT++FMYA G++HP + P+ + L+ + V + E +QE+ + Y + +
Sbjct 1 MIFIDTSIFMYAAGKEHPNKEPSVKLLQLIAVGEIEAVINVEVLQEIFHRYTMIKMKKKG 60
Query 60 LDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFD 117
+ A ++ + I+ +E +D A + R+ + +RD +H+A R + + T+D
Sbjct 61 IQLAKNIISLVPRIYSIEISDAIRAMDILERY-DITSRDAIHMAFMLNRNIKEVCTYD 117
>gi|258593755|emb|CBE70096.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=143
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/118 (34%), Positives = 60/118 (51%), Gaps = 3/118 (2%)
Query 3 FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAY--VPVGRNSTL 60
F+DTN+FMYA GR+HP++ P L + +T+AE +QE+L Y + G
Sbjct 4 FLDTNIFMYAAGREHPMKGPCVAILRRVALDELEALTNAEVLQEILYRYRAIEEGERGLH 63
Query 61 DSALTLVRALTEIWPVEAADVAHARTLHHRHPGL-GARDLLHLACCQRRGVTRIKTFD 117
+ L + + EI PV AD+ A L R+ + +RD +H A G+ I + D
Sbjct 64 LARLAVDQVGGEILPVTLADMQRAFDLVARYRAMITSRDAVHAATALNHGLKHIISVD 121
>gi|225181869|ref|ZP_03735305.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167453|gb|EEG76268.1| PilT protein domain protein [Dethiobacter alkaliphilus AHT 1]
Length=140
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/123 (27%), Positives = 53/123 (44%), Gaps = 10/123 (8%)
Query 2 IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLD 61
+F+DTN+ MYA ++H + E L T E QE++ Y + + D
Sbjct 3 VFIDTNIPMYAASKEHHFKASCVEILRSVAAGHLNAFTDTEVFQEIMYRYFSINQR---D 59
Query 62 SALTLVRALTEIW-----PVEAADVAHARTL--HHRHPGLGARDLLHLACCQRRGVTRIK 114
L + + ++I +E D+ AR L + + L RD +HLA + RI
Sbjct 60 FGLRVFDSFSKIMDGSVLAIEHQDMLLARKLISNPTYSALSPRDTIHLAVMLNHRIKRII 119
Query 115 TFD 117
T D
Sbjct 120 TAD 122
>gi|15607801|ref|NP_215175.1| hypothetical protein Rv0661c [Mycobacterium tuberculosis H37Rv]
gi|15840064|ref|NP_335101.1| hypothetical protein MT0690 [Mycobacterium tuberculosis CDC1551]
gi|31791845|ref|NP_854338.1| hypothetical protein Mb0680c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=145
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/48 (40%), Positives = 29/48 (61%), Gaps = 0/48 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL 48
MI +DT V +YA G +HPLR P R+ + + + T+AE +QE +
Sbjct 1 MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV 48
>gi|323357846|ref|YP_004224242.1| nucleic acid-binding protein [Microbacterium testaceum StLB037]
gi|323274217|dbj|BAJ74362.1| predicted nucleic acid-binding protein [Microbacterium testaceum
StLB037]
Length=131
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/125 (33%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
MI+VD+ + +YAV RD + AR L E ++ + TS A+ E L V R++
Sbjct 1 MIYVDSCLVIYAVERDDHVGERARSALA---EAEEPIATSPLAVLESL---VGPMRDADA 54
Query 61 DSALTLVRALT--EIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKTFDH 118
++ L + A E+ PVE A L R+ GL D LHL ++ G T T D
Sbjct 55 EAQLRMWTAFDAFELLPVEPDAYLDAALLRARYRGLRTADALHLGIARQAGCTAFWTNDA 114
Query 119 TLASA 123
L +A
Sbjct 115 RLHAA 119
>gi|256824109|ref|YP_003148069.1| nucleic acid-binding protein [Kytococcus sedentarius DSM 20547]
gi|256687502|gb|ACV05304.1| predicted nucleic acid-binding protein, contains PIN domain [Kytococcus
sedentarius DSM 20547]
Length=137
Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/47 (39%), Positives = 28/47 (60%), Gaps = 0/47 (0%)
Query 2 IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL 48
+F+D+ + ++A G DH +R P+R +LE + L S EA QE L
Sbjct 4 VFIDSTILLHAAGGDHAMRAPSRRWLEAAASGGMALHASVEAGQEFL 50
>gi|333989224|ref|YP_004521838.1| hypothetical protein JDM601_0584 [Mycobacterium sp. JDM601]
gi|333485192|gb|AEF34584.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=143
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/110 (27%), Positives = 45/110 (41%), Gaps = 1/110 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYV-PVGRNST 59
MI +DT V +YA G DH R P R+ + + T+ E +QE ++ GRN
Sbjct 1 MIVLDTTVLVYAKGADHRFREPCRDLIAAVAADRIEATTTPEVIQEFVHIRARRRGRNDA 60
Query 60 LDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRG 109
+ L + V + T+ P +GA D + A + G
Sbjct 61 ATLGRSYAELLAPLLTVAGDHLERGLTMFETTPSVGAVDSVLAAVAKSAG 110
>gi|284047180|ref|YP_003397520.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
gi|283951401|gb|ADB54145.1| PilT protein domain protein [Conexibacter woesei DSM 14684]
Length=141
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/124 (34%), Positives = 55/124 (45%), Gaps = 16/124 (12%)
Query 3 FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLDS 62
FVD NV +Y+V D + LE + D TSA A++E+ + + RN L
Sbjct 4 FVDANVIVYSV-TDCVQQEACARLLEAIAKGADGR-TSASALEEVWH----LERNGRLGG 57
Query 63 ALTLV----RALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRI----K 114
+ R LT + PV D A A L P LGA D +H+ C G+ I K
Sbjct 58 QTGVAEGAHRMLTPLVPV--TDEAFALALTVEAPRLGASDRIHVGTCLAHGIGTIVTADK 115
Query 115 TFDH 118
FDH
Sbjct 116 GFDH 119
>gi|88603396|ref|YP_503574.1| PilT protein-like protein [Methanospirillum hungatei JF-1]
gi|88188858|gb|ABD41855.1| PilT protein-like protein [Methanospirillum hungatei JF-1]
Length=136
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/122 (28%), Positives = 55/122 (46%), Gaps = 9/122 (7%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYV-PVGRNST 59
M ++D+N F+YAV D P R L H +E + TS E++ + + R
Sbjct 1 MNYIDSNFFIYAVASDTPEGRWCRSTLSHIMEGEFIACTSTLTWDEIVYVLMKKINREIA 60
Query 60 LDSA---LTLVRA-LTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKT 115
L+ + L+L ++ P E +AH+ + + RD +H AC +G+ I T
Sbjct 61 LECSEYFLSLPNVHYIDVSP-EILKLAHSIMTQY---AMKPRDAIHAACMSHQGINTIIT 116
Query 116 FD 117
D
Sbjct 117 ED 118
>gi|167967493|ref|ZP_02549770.1| hypothetical protein MtubH3_05437 [Mycobacterium tuberculosis
H37Ra]
gi|254549621|ref|ZP_05140068.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|339293694|gb|AEJ45805.1| hypothetical protein CCDC5079_0615 [Mycobacterium tuberculosis
CCDC5079]
gi|339297334|gb|AEJ49444.1| hypothetical protein CCDC5180_0607 [Mycobacterium tuberculosis
CCDC5180]
Length=143
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/46 (37%), Positives = 27/46 (59%), Gaps = 0/46 (0%)
Query 3 FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL 48
+DT V +YA G +HPLR P R+ + + + T+AE +QE +
Sbjct 1 MLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFV 46
>gi|292491927|ref|YP_003527366.1| PilT domain-containing protein [Nitrosococcus halophilus Nc4]
gi|291580522|gb|ADE14979.1| PilT domain-containing protein [Nitrosococcus halophilus Nc4]
Length=139
Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/122 (30%), Positives = 55/122 (46%), Gaps = 12/122 (9%)
Query 3 FVDTNVFMYAVGRDHPLR-MPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLD 61
F+DTNV +YA D + + A ++ E ++ L+ S + +QE YV V R +
Sbjct 6 FIDTNVLIYAYDLDAGAKHLKAASIVKTCWEQRNGLI-STQVLQEF---YVNVTRKIPMP 61
Query 62 SALTLVRALT---EIWPV---EAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKT 115
L R + E WP+ E +DV A L R+ L D L +A + T + T
Sbjct 62 VPLAKARGVLNTYEAWPIIVNELSDVLFASELQERYQ-LSFWDALIVAAAHKGRATVLLT 120
Query 116 FD 117
D
Sbjct 121 ED 122
>gi|147679127|ref|YP_001213342.1| nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
gi|146275224|dbj|BAF60973.1| predicted nucleic acid-binding protein [Pelotomaculum thermopropionicum
SI]
Length=145
Score = 37.7 bits (86), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/82 (35%), Positives = 39/82 (48%), Gaps = 9/82 (10%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVP------V 54
MI DTNV +YA+ D P +R+F+E Q + + S +Q LL Y V
Sbjct 1 MILTDTNVLVYAINTDAPQHTASRKFVEAV---QQKNIDSVLPVQVLLEFYAIVTDHRRV 57
Query 55 GRNSTLDSALTLVRALTEIWPV 76
R ++A V AL I+PV
Sbjct 58 TRPLEPETAWKQVNALRAIFPV 79
>gi|328870290|gb|EGG18665.1| ankyrin repeat-containing protein [Dictyostelium fasciculatum]
Length=680
Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 24/78 (31%), Positives = 41/78 (53%), Gaps = 3/78 (3%)
Query 25 EFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTLDSALTLVRALTEIWPVEAADVAHA 84
EF++H L ++D ++ + +++ Y RN+TLD+ L L+ E P + D AH
Sbjct 161 EFIKHYLPNKDNVLLQRRMI--VISQYC-AHRNATLDTLLKLLEWSPEYDPQDQFDSAHH 217
Query 85 RTLHHRHPGLGARDLLHL 102
+ L + G RD+L L
Sbjct 218 QNLFYNVSAQGHRDILEL 235
>gi|116624725|ref|YP_826881.1| PilT domain-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116227887|gb|ABJ86596.1| PIN domain family protein [Candidatus Solibacter usitatus Ellin6076]
Length=142
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (36%), Positives = 26/48 (55%), Gaps = 0/48 (0%)
Query 1 MIFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELL 48
M +D N+ +YAV +D PL AR++LE +L + L S + L
Sbjct 1 MKLLDANILLYAVNKDAPLHQSARQWLEKTLSGDEPLGFSWNVILAFL 48
>gi|330507575|ref|YP_004384003.1| PIN domain-containing protein [Methanosaeta concilii GP6]
gi|328928383|gb|AEB68185.1| PIN domain protein, putative [Methanosaeta concilii GP6]
Length=168
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/143 (23%), Positives = 55/143 (39%), Gaps = 27/143 (18%)
Query 2 IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNST-- 59
IF+DTN+F+Y R R FL++ TSA + E+++ + T
Sbjct 14 IFIDTNIFLYGALDYTKYRATCRAFLQNIESGTYFAATSALVLNEIIHKLILAETTKTYH 73
Query 60 ----------LDSALTLVRALTEIW--------------PVEAADVAHARTLHHRHPGLG 95
++ + +L +W ++ A + A L R+ GL
Sbjct 74 LRSESEARKLIEDKSETISSLARVWKTYAVIRAYPLVIHSIDKATMDMATDLSSRY-GLF 132
Query 96 ARDLLHLACCQRRGVTRIKTFDH 118
D HLA + G++ I T D+
Sbjct 133 ISDASHLAVMKMNGISNIATNDN 155
>gi|297526892|ref|YP_003668916.1| PilT protein domain-containing protein [Staphylothermus hellenicus
DSM 12710]
gi|297255808|gb|ADI32017.1| PilT protein domain protein [Staphylothermus hellenicus DSM 12710]
Length=139
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/131 (31%), Positives = 61/131 (47%), Gaps = 17/131 (12%)
Query 3 FVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDR--LVTSAEAMQELLNAYVPV-GRN-- 57
+VD N+F+Y + + ARE++ +EH R +TSA + EL + G+N
Sbjct 6 YVDVNIFVYWLAKHPEYGEKAREWIRR-IEHSRRGEYITSALTLYELAVILSGLTGKNLR 64
Query 58 -----STLDSALTLVRALTEIWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTR 112
T+ A+T + +L E+ ++ D A L +H L D LHLA R T+
Sbjct 65 EERLVKTIIDAVTKLPSL-EVVALKWEDHVRALELMQKH-SLDYEDSLHLATALRSKATK 122
Query 113 I----KTFDHT 119
I K FD T
Sbjct 123 IISNNKDFDKT 133
>gi|299137106|ref|ZP_07030289.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
gi|298601621|gb|EFI57776.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
Length=141
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/127 (30%), Positives = 52/127 (41%), Gaps = 12/127 (9%)
Query 2 IFVDTNVFMYAVGRDHPLRMP-AREFLEHSLEHQDRLVTSAEAMQELLNAYVPVGRNSTL 60
+F D +F+Y V +HP R L+ S E D+L TS A+ E+L S
Sbjct 4 VFWDAMLFIYLV-ENHPQYFKRCRYLLQRSFERGDKLYTSHLALGEVLAG----AEKSPF 58
Query 61 DSALTLVRALTE-----IWPVEAADVAHARTLHHRHPGLGARDLLHLACCQRRGVTRIKT 115
S ++A+ E P +A V L + L D +HLAC G+ T
Sbjct 59 PSKSKAIQAVAEEMGFTGLPFDAGAVPTFADLRAKRK-LKIADSIHLACAASAGMDLFLT 117
Query 116 FDHTLAS 122
D LA
Sbjct 118 GDAQLAG 124
>gi|344340185|ref|ZP_08771111.1| PilT protein domain protein [Thiocapsa marina 5811]
gi|343799843|gb|EGV17791.1| PilT protein domain protein [Thiocapsa marina 5811]
Length=144
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/72 (39%), Positives = 40/72 (56%), Gaps = 6/72 (8%)
Query 57 NSTLDSALTLVRALT----EIWPVEAADVAHARTLH-HRHPGLGARDLLHLACCQRRGVT 111
S ++ALT+ R + ++ +E+AD A + H L A D LHLA C+R G T
Sbjct 60 TSEQNAALTMFRRFSALRLDVVNIESADFDVAAEMSGHSGVALRAGDALHLAVCRRLG-T 118
Query 112 RIKTFDHTLASA 123
R+ TFD LA+A
Sbjct 119 RLATFDAGLAAA 130
>gi|345131456|gb|EGW62358.1| glycosyl transferase group 1 [Dechlorosoma suillum PS]
Length=414
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (35%), Positives = 28/55 (51%), Gaps = 0/55 (0%)
Query 32 EHQDRLVTSAEAMQELLNAYVPVGRNSTLDSALTLVRALTEIWPVEAADVAHART 86
+H S A++E+L A VP+ + L L RALT +W ++ DV H T
Sbjct 65 QHAQERPASGHALEEVLAAGVPIPSYAGLKLGLPAKRALTRLWSLQRPDVVHVVT 119
>gi|331214835|ref|XP_003320098.1| SCY1 protein kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|309299088|gb|EFP75679.1| SCY1 protein kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length=966
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 20/60 (34%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query 16 DHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLNAY---VPVGRNSTLDSALTLVRALTE 72
D +R+ E L H ++H DR V + LL + VP+ R +T+ S L L L+E
Sbjct 495 DRAIRLSLLELLPHYVDHLDRSVVVEKIWPSLLTGFTDTVPIIREATVKSVLLLAPKLSE 554
>gi|88810685|ref|ZP_01125942.1| PIN domain protein [Nitrococcus mobilis Nb-231]
gi|88792315|gb|EAR23425.1| PIN domain protein [Nitrococcus mobilis Nb-231]
Length=135
Score = 33.9 bits (76), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/48 (34%), Positives = 25/48 (53%), Gaps = 0/48 (0%)
Query 2 IFVDTNVFMYAVGRDHPLRMPAREFLEHSLEHQDRLVTSAEAMQELLN 49
+FVDTNV +Y+V P + A + L +VTS + ++E N
Sbjct 4 VFVDTNVLVYSVDPSEPSKRDASRRILLELARTGEIVTSTQVLKEFYN 51
Lambda K H
0.326 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129836892488
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40