BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2871

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15610008|ref|NP_217387.1|  hypothetical protein Rv2871 [Mycoba...   165    2e-39
gi|254551940|ref|ZP_05142387.1|  antitoxin [Mycobacterium tubercu...   164    3e-39
gi|240171735|ref|ZP_04750394.1|  hypothetical protein MkanA1_2064...   141    3e-32
gi|157382509|gb|ABV48745.1|  Rv2871 [Mycobacterium kansasii ATCC ...   140    7e-32
gi|296130775|ref|YP_003638025.1|  putative transcriptional regula...  72.4    2e-11
gi|94265939|ref|ZP_01289665.1|  conserved hypothetical protein [d...  57.4    7e-07
gi|284122510|ref|ZP_06386856.1|  conserved hypothetical protein [...  55.5    3e-06
gi|297623625|ref|YP_003705059.1|  CopG family transcriptional reg...  55.5    3e-06
gi|332321844|sp|P0CW33.1|VPB25_MYCTU  RecName: Full=Antitoxin VapB25  53.9    9e-06
gi|88812000|ref|ZP_01127253.1|  hypothetical protein NB231_06406 ...  53.5    1e-05
gi|121636191|ref|YP_976414.1|  antitoxin [Mycobacterium bovis BCG...  52.8    2e-05
gi|254364141|ref|ZP_04980187.1|  conserved hypothetical protein [...  52.4    2e-05
gi|15840686|ref|NP_335723.1|  hypothetical protein MT1279 [Mycoba...  52.4    2e-05
gi|15608381|ref|NP_215757.1|  hypothetical protein Rv1241 [Mycoba...  52.4    3e-05
gi|116748339|ref|YP_845026.1|  hypothetical protein Sfum_0895 [Sy...  50.4    9e-05
gi|289748048|ref|ZP_06507426.1|  conserved hypothetical protein [...  48.9    3e-04
gi|297567543|ref|YP_003686515.1|  hypothetical protein Mesil_3184...  48.5    4e-04
gi|15840161|ref|NP_335198.1|  hypothetical protein MT0772.6 [Myco...  48.1    4e-04
gi|289573366|ref|ZP_06453593.1|  antitoxin [Mycobacterium tubercu...  48.1    5e-04
gi|15607888|ref|NP_215262.1|  hypothetical protein Rv0748 [Mycoba...  47.8    5e-04
gi|289749257|ref|ZP_06508635.1|  conserved hypothetical protein [...  46.6    0.001
gi|240168913|ref|ZP_04747572.1|  hypothetical protein MkanA1_0635...  46.2    0.002
gi|87123095|ref|ZP_01078946.1|  hypothetical protein RS9917_04530...  42.7    0.017
gi|160898240|ref|YP_001563822.1|  antitoxin [Delftia acidovorans ...  40.8    0.070
gi|258593409|emb|CBE69748.1|  conserved protein of unknown functi...  40.4    0.096
gi|254172538|ref|ZP_04879213.1|  Ribbon-helix-helix protein, copG...  38.9    0.23 
gi|336288070|gb|AEI30345.1|  CopG domain protein DNA-binding doma...  38.5    0.35 
gi|333967819|gb|AEG34583.1|  hypothetical protein Ththe16_2214 [T...  38.5    0.35 
gi|15610457|ref|NP_217838.1|  hypothetical protein Rv3321c [Mycob...  38.1    0.50 
gi|254549713|ref|ZP_05140160.1|  hypothetical protein Mtube_04496...  37.7    0.57 
gi|332157926|ref|YP_004423205.1|  hypothetical protein PNA2_0283 ...  37.7    0.64 
gi|309365241|emb|CAP24062.2|  hypothetical protein CBG_02458 [Cae...  37.7    0.65 
gi|298529271|ref|ZP_07016674.1|  CopG domain protein DNA-binding ...  37.4    0.68 
gi|298524743|ref|ZP_07012152.1|  conserved hypothetical protein [...  37.4    0.77 
gi|268531276|ref|XP_002630764.1|  Hypothetical protein CBG02458 [...  37.0    0.87 
gi|254430625|ref|ZP_05044328.1|  conserved hypothetical protein [...  37.0    0.93 
gi|116073604|ref|ZP_01470866.1|  hypothetical protein RS9916_3417...  36.6    1.1  
gi|320108461|ref|YP_004184051.1|  hypothetical protein AciPR4_330...  36.6    1.4  
gi|289575235|ref|ZP_06455462.1|  antitoxin [Mycobacterium tubercu...  36.2    1.5  
gi|148660043|ref|YP_001281566.1|  hypothetical protein MRA_0286 [...  36.2    1.5  
gi|322433889|ref|YP_004216101.1|  hypothetical protein AciX9_0247...  36.2    1.6  
gi|336288124|gb|AEI30374.1|  conserved hypothetical protein [uncu...  36.2    1.6  
gi|337267946|ref|YP_004612001.1|  hypothetical protein Mesop_3461...  36.2    1.9  
gi|292490752|ref|YP_003526191.1|  hypothetical protein Nhal_0622 ...  35.8    2.2  
gi|188534449|ref|YP_001908246.1|  replication initiation regulato...  35.8    2.5  
gi|296164380|ref|ZP_06846956.1|  D-alanine-D-alanine ligase [Myco...  35.4    2.9  
gi|289568188|ref|ZP_06448415.1|  conserved hypothetical protein [...  35.4    3.0  
gi|312114704|ref|YP_004012300.1|  hypothetical protein Rvan_1965 ...  35.4    3.1  
gi|15842141|ref|NP_337178.1|  hypothetical protein MT2676 [Mycoba...  34.7    4.4  
gi|340627619|ref|YP_004746071.1|  hypothetical protein MCAN_26441...  34.7    4.4  


>gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycobacterium tuberculosis H37Rv]
 gi|31794048|ref|NP_856541.1| hypothetical protein Mb2896 [Mycobacterium bovis AF2122/97]
 gi|121638753|ref|YP_978977.1| hypothetical protein BCG_2893 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 73 more sequence titles
 Length=85

 Score =  165 bits (418),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR
Sbjct  1   MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
           PGVDLSSNAALAEAMNDGVSVDAVR
Sbjct  61  PGVDLSSNAALAEAMNDGVSVDAVR  85


>gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=85

 Score =  164 bits (416),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 83/85 (98%), Positives = 85/85 (100%), Gaps = 0/85 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGG+R
Sbjct  1   MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGMR  60

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
           PGVDLSSNAALAEAMNDGVSVDAVR
Sbjct  61  PGVDLSSNAALAEAMNDGVSVDAVR  85


>gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_20645 [Mycobacterium kansasii ATCC 
12478]
Length=86

 Score =  141 bits (355),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 73/85 (86%), Positives = 78/85 (92%), Gaps = 0/85 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           VRTTIRIDDELYREVKA+AARSGRTVAAVLEDAVR GLNPP   AAGRYRVQP G GGLR
Sbjct  2   VRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSGGLR  61

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
           PGVDLSSNAA+AEAM++GV VDA+R
Sbjct  62  PGVDLSSNAAVAEAMDEGVPVDALR  86


>gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC 12478]
Length=85

 Score =  140 bits (353),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 72/85 (85%), Positives = 78/85 (92%), Gaps = 0/85 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTTIRIDDELYREVKA+AARSGRTVAAVLEDAVR GLNPP   AAGRYRVQP G GGLR
Sbjct  1   MRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSGGLR  60

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
           PGVDLSSNAA+AEAM++GV VDA+R
Sbjct  61  PGVDLSSNAAVAEAMDEGVPVDALR  85


>gi|296130775|ref|YP_003638025.1| putative transcriptional regulator, CopG family [Cellulomonas 
flavigena DSM 20109]
 gi|296022590|gb|ADG75826.1| putative transcriptional regulator, CopG family [Cellulomonas 
flavigena DSM 20109]
Length=83

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 40/77 (52%), Positives = 52/77 (68%), Gaps = 1/77 (1%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAA-GRYRVQPSGKGGL  59
           +RTT+ + DELYREVKA AARSGRTV +V+EDA+R  L   +  A    +R+   G GGL
Sbjct  5   MRTTLHLPDELYREVKAAAARSGRTVTSVVEDALRAELERFRATAERPPFRIDAVGSGGL  64

Query  60  RPGVDLSSNAALAEAMN  76
            PGVDL  +AAL + + 
Sbjct  65  LPGVDLDDSAALLDVLE  81


>gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453525|gb|EAT03933.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length=94

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 28/77 (37%), Positives = 47/77 (62%), Gaps = 0/77 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ IDD+L  E++  A RSG+    ++ +A+R+GLN  +      YR++ S  G +R
Sbjct  7   MRTTLTIDDQLSVELREAANRSGKPFKQIVNEALRKGLNALEHPPGRPYRIKSSSLGKVR  66

Query  61  PGVDLSSNAALAEAMND  77
           PG++L     LA+ + D
Sbjct  67  PGINLDKALGLADGLED  83


>gi|284122510|ref|ZP_06386856.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829354|gb|EFC33750.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
Length=79

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 29/77 (38%), Positives = 48/77 (63%), Gaps = 2/77 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQ-PSGKGGL  59
           +RTT+ +DD LY+  K +A   G TV  V++DA++  L+ P  Q   +Y+++ P+ KG L
Sbjct  1   MRTTLNLDDRLYQAAKIRATSEGTTVTQVIQDALKEFLHRPN-QTRSKYKLRWPTQKGRL  59

Query  60  RPGVDLSSNAALAEAMN  76
            PGV+     +L +AM+
Sbjct  60  LPGVNPDDRTSLYDAMD  76


>gi|297623625|ref|YP_003705059.1| CopG family transcriptional regulator [Truepera radiovictrix 
DSM 17093]
 gi|297164805|gb|ADI14516.1| transcriptional regulator, CopG family [Truepera radiovictrix 
DSM 17093]
Length=82

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 37/82 (46%), Positives = 47/82 (58%), Gaps = 9/82 (10%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPK------PQAAGRYRVQPS  54
           +RTTIR+DDEL RE K  AA + +T+ AV+E+A+R  L   K      P     YR    
Sbjct  1   MRTTIRLDDELLREAKRLAAETNQTLTAVIEEALRERLARRKGARDRPPFTPKVYR---G  57

Query  55  GKGGLRPGVDLSSNAALAEAMN  76
              GL+PGVDL  NAAL + M 
Sbjct  58  PAKGLQPGVDLDDNAALLDLME  79


>gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25
Length=85

 Score = 53.9 bits (128),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 33/84 (40%), Positives = 52/84 (62%), Gaps = 2/84 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL  59
           +RTT+ I DEL    K +A   G+++ AV+EDA+RR L   +   A R  V     G G 
Sbjct  1   MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP  59

Query  60  RPGVDLSSNAALAEAMNDGVSVDA  83
           RPG+DL+SN  L+E +++G+ +++
Sbjct  60  RPGIDLTSNTVLSEVLDEGLELNS  83


>gi|88812000|ref|ZP_01127253.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
 gi|88790884|gb|EAR21998.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
Length=78

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 30/77 (39%), Positives = 45/77 (59%), Gaps = 1/77 (1%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL  59
           +RTT+ IDD+L    KA+AA SG T+A ++EDA+R  L+  +           + KG G 
Sbjct  1   MRTTLNIDDQLLLRAKAQAAVSGVTLAQLIEDALRESLSRRERVEERGRVRIITAKGTGT  60

Query  60  RPGVDLSSNAALAEAMN  76
           RPG+DL  + +L + M 
Sbjct  61  RPGIDLDHSPSLLDIME  77


>gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988664|ref|YP_002643351.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|121491838|emb|CAL70300.1| Conserved hypothetical protein, antitoxin [Mycobacterium bovis 
BCG str. Pasteur 1173P2]
 gi|224771777|dbj|BAH24583.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str. 
Tokyo 172]
 gi|341600207|emb|CCC62876.1| conserved hypothetical protein, antitoxin [Mycobacterium bovis 
BCG str. Moreau RDJ]
Length=85

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 33/84 (40%), Positives = 52/84 (62%), Gaps = 2/84 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL  59
           +RTT+ I DEL    K +A   G+++ AV+EDA+RR L   +   A R  V     G G 
Sbjct  1   MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP  59

Query  60  RPGVDLSSNAALAEAMNDGVSVDA  83
           RPG+DL+SN  L+E +++G+ +++
Sbjct  60  RPGIDLTSNRVLSEVLDEGLELNS  83


>gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289554970|ref|ZP_06444180.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289744986|ref|ZP_06504364.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|134149655|gb|EBA41700.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|289439602|gb|EFD22095.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
605]
 gi|289685514|gb|EFD53002.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|328459460|gb|AEB04883.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 
4207]
Length=90

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 2/85 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ +DD++ R V+    R  R +  V+ DA+RR L PP  +   +YR++P  +  +R
Sbjct  5   MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR  62

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
            G+DL+    LA+ + D   +DA R
Sbjct  63  SGLDLAGFNKLADELEDEALLDATR  87


>gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
 gi|13880873|gb|AAK45537.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
Length=98

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 2/85 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ +DD++ R V+    R  R +  V+ DA+RR L PP  +   +YR++P  +  +R
Sbjct  13  MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR  70

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
            G+DL+    LA+ + D   +DA R
Sbjct  71  SGLDLAGFNKLADELEDEALLDATR  95


>gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycobacterium tuberculosis H37Rv]
 gi|31792434|ref|NP_854927.1| hypothetical protein Mb1273 [Mycobacterium bovis AF2122/97]
 gi|121637170|ref|YP_977393.1| hypothetical protein BCG_1301 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 68 more sequence titles
 Length=86

 Score = 52.4 bits (124),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 2/85 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ +DD++ R V+    R  R +  V+ DA+RR L PP  +   +YR++P  +  +R
Sbjct  1   MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR  58

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
            G+DL+    LA+ + D   +DA R
Sbjct  59  SGLDLAGFNKLADELEDEALLDATR  83


>gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Syntrophobacter fumaroxidans 
MPOB]
 gi|116697403|gb|ABK16591.1| conserved hypothetical protein [Syntrophobacter fumaroxidans 
MPOB]
Length=88

 Score = 50.4 bits (119),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 28/78 (36%), Positives = 44/78 (57%), Gaps = 0/78 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ IDDE+   +K  A RSG++   V+ DA+R+G +  +   A  YR+ P+  G LR
Sbjct  1   MRTTLTIDDEIAVSLKDLAHRSGKSFRQVVNDALRKGAHALENPEARPYRLSPTSLGLLR  60

Query  61  PGVDLSSNAALAEAMNDG  78
             ++L     LA+   D 
Sbjct  61  SNINLDKALNLADEREDA  78


>gi|289748048|ref|ZP_06507426.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289688576|gb|EFD56064.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=88

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 32/91 (36%), Positives = 52/91 (58%), Gaps = 16/91 (17%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRR--------GLNPPKPQAAGRYRVQ  52
           +RTT+ I DE+    K +A   G+++ AV+EDA+RR        G  P  P       V 
Sbjct  4   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVP-------VF  56

Query  53  PSGKGGLRPGVDLSSNAALAEAMNDGVSVDA  83
            +G G  RPG+DL+SN  L+E +++G+ +++
Sbjct  57  DAGTGP-RPGIDLTSNTVLSEVLDEGLELNS  86


>gi|297567543|ref|YP_003686515.1| hypothetical protein Mesil_3184 [Meiothermus silvanus DSM 9946]
 gi|296851992|gb|ADH65007.1| hypothetical protein Mesil_3184 [Meiothermus silvanus DSM 9946]
Length=83

 Score = 48.5 bits (114),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 25/45 (56%), Positives = 32/45 (72%), Gaps = 2/45 (4%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLN--PPKP  43
           ++TT+RIDDELYR  KA+AAR G T+   LE+A+R  L   P KP
Sbjct  1   MQTTLRIDDELYRRAKAEAARQGITLTQFLEEALRLRLQYRPGKP  45


>gi|15840161|ref|NP_335198.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
 gi|13880314|gb|AAK45012.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
Length=88

 Score = 48.1 bits (113),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 49/85 (58%), Gaps = 4/85 (4%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ I DE+    K +A   G+++ AV+EDA+RR          G     P   GG  
Sbjct  4   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTVPVFDGGTG  61

Query  61  P--GVDLSSNAALAEAMNDGVSVDA  83
           P  G+DL+SN AL+E +++G+ +++
Sbjct  62  PRRGIDLTSNRALSEVLDEGLELNS  86


>gi|289573366|ref|ZP_06453593.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339630816|ref|YP_004722458.1| hypothetical protein MAF_07580 [Mycobacterium africanum GM041182]
 gi|289537797|gb|EFD42375.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339330172|emb|CCC25830.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=85

 Score = 48.1 bits (113),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 49/85 (58%), Gaps = 4/85 (4%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ I DE+    K +A   G+++ AV+EDA+RR          G     P   GG  
Sbjct  1   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTGPVFDGGTG  58

Query  61  P--GVDLSSNAALAEAMNDGVSVDA  83
           P  G+DL+SN AL+E +++G+ +++
Sbjct  59  PRRGIDLTSNRALSEVLDEGLELNS  83


>gi|15607888|ref|NP_215262.1| hypothetical protein Rv0748 [Mycobacterium tuberculosis H37Rv]
 gi|31791934|ref|NP_854427.1| hypothetical protein Mb0769 [Mycobacterium bovis AF2122/97]
 gi|121636670|ref|YP_976893.1| hypothetical protein BCG_0798 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 59 more sequence titles
 Length=85

 Score = 47.8 bits (112),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 30/85 (36%), Positives = 49/85 (58%), Gaps = 4/85 (4%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ I DE+    K +A   G+++ AV+EDA+RR          G     P   GG  
Sbjct  1   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTVPVFDGGTG  58

Query  61  P--GVDLSSNAALAEAMNDGVSVDA  83
           P  G+DL+SN AL+E +++G+ +++
Sbjct  59  PRRGIDLTSNRALSEVLDEGLELNS  83


>gi|289749257|ref|ZP_06508635.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289689844|gb|EFD57273.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=85

 Score = 46.6 bits (109),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 29/85 (35%), Positives = 48/85 (57%), Gaps = 4/85 (4%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ I DE+    K +A   G+++ AV+EDA+RR          G     P   GG  
Sbjct  1   MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTVPVFDGGTG  58

Query  61  P--GVDLSSNAALAEAMNDGVSVDA  83
           P  G+DL+SN  L+E +++G+ +++
Sbjct  59  PRRGIDLTSNRVLSEVLDEGLELNS  83


>gi|240168913|ref|ZP_04747572.1| hypothetical protein MkanA1_06350 [Mycobacterium kansasii ATCC 
12478]
Length=93

 Score = 46.2 bits (108),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 26/85 (31%), Positives = 46/85 (55%), Gaps = 2/85 (2%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ +DD++ R ++    R  R +  V+ DA+R+ L  P  +    Y+++P  +  +R
Sbjct  8   MRTTLTLDDDVVRLIEEAVHRERRPMKHVINDALRKALAQPMERRTP-YQLKPH-RSAVR  65

Query  61  PGVDLSSNAALAEAMNDGVSVDAVR  85
           PG D +    LA+ M D   +D  R
Sbjct  66  PGFDFAGFNRLADEMEDQAILDQKR  90


>gi|87123095|ref|ZP_01078946.1| hypothetical protein RS9917_04530 [Synechococcus sp. RS9917]
 gi|86168815|gb|EAQ70071.1| hypothetical protein RS9917_04530 [Synechococcus sp. RS9917]
Length=79

 Score = 42.7 bits (99),  Expect = 0.017, Method: Compositional matrix adjust.
 Identities = 29/80 (37%), Positives = 43/80 (54%), Gaps = 6/80 (7%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGR--YRVQPSGKGG  58
           +RTT+ + D L+  +KA+AAR   T+  +L+  V +GL  P P    +   R  P  +G 
Sbjct  1   MRTTLELPDPLFARLKARAAREQLTLKQLLQHYVEQGLEAPTPSTTAQRSARQLPRLEGQ  60

Query  59  LRPGVDLS--SNAALAEAMN  76
           L   +D S  SNAAL E + 
Sbjct  61  L--AIDSSRVSNAALFELLE  78


>gi|160898240|ref|YP_001563822.1| antitoxin [Delftia acidovorans SPH-1]
 gi|160363824|gb|ABX35437.1| conserved hypothetical protein, antitoxin [Delftia acidovorans 
SPH-1]
Length=81

 Score = 40.8 bits (94),  Expect = 0.070, Method: Compositional matrix adjust.
 Identities = 28/76 (37%), Positives = 43/76 (57%), Gaps = 4/76 (5%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQP--SGKGG  58
           ++TT+ ++D L  E K  AA+   ++  ++E+ ++  L   K QA  R    P   GKGG
Sbjct  1   MKTTLDLNDALLTEAKTYAAQQHTSLTRLIEEGLQLRLR--KAQAPARRVRLPVYHGKGG  58

Query  59  LRPGVDLSSNAALAEA  74
           L PG+D  SN AL +A
Sbjct  59  LAPGLDALSNRALLDA  74


>gi|258593409|emb|CBE69748.1| conserved protein of unknown function [NC10 bacterium 'Dutch 
sediment']
Length=81

 Score = 40.4 bits (93),  Expect = 0.096, Method: Compositional matrix adjust.
 Identities = 26/80 (33%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRV-QPSGKG-G  58
           ++TTI + D L R+ +  AA  G T+ A++E+ +RR L   + +  GR+ + + + KG G
Sbjct  1   MKTTIEVTDTLLRDARQLAANEGTTLRALVEEGLRRIL--AEREQGGRFHLRKATFKGSG  58

Query  59  LRPGVDLSSNAALAEAMNDG  78
           L+PG+  +S   + E + +G
Sbjct  59  LQPGLTTASWDRIREMIYEG  78


>gi|254172538|ref|ZP_04879213.1| Ribbon-helix-helix protein, copG family [Thermococcus sp. AM4]
 gi|214033467|gb|EEB74294.1| Ribbon-helix-helix protein, copG family [Thermococcus sp. AM4]
Length=85

 Score = 38.9 bits (89),  Expect = 0.23, Method: Compositional matrix adjust.
 Identities = 16/35 (46%), Positives = 26/35 (75%), Gaps = 0/35 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVR  35
           V+T++ +D+EL+RE K  A R G  V+ +LE+A+R
Sbjct  4   VKTSVYVDEELWREFKELALREGSEVSKLLEEAIR  38


>gi|336288070|gb|AEI30345.1| CopG domain protein DNA-binding domain protein [uncultured microorganism]
Length=78

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 25/76 (33%), Positives = 40/76 (53%), Gaps = 7/76 (9%)

Query  2   RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRP  61
           R TI +DD L+R +K  A R GR++ +++E+++R  L   + QA  R  V  +     R 
Sbjct  3   RLTITLDDNLHRALKETAVRQGRSITSIIEESLR--LRGIRDQAGARDLVNQA-----RE  55

Query  62  GVDLSSNAALAEAMND  77
              L    AL  A+N+
Sbjct  56  RASLGEEEALELAVNE  71


>gi|333967819|gb|AEG34583.1| hypothetical protein Ththe16_2214 [Thermus thermophilus SG0.5JP17-16]
Length=80

 Score = 38.5 bits (88),  Expect = 0.35, Method: Compositional matrix adjust.
 Identities = 22/48 (46%), Positives = 32/48 (67%), Gaps = 5/48 (10%)

Query  1   VRTTIRIDDELYREVKAKAARSGRT----VAAVLEDAVRRGLNP-PKP  43
           +RTT+ + D LYR +K +AAR G+T    V   LE+ +RRG +P P+P
Sbjct  1   MRTTLDLPDPLYRRLKLQAAREGKTLRELVIRYLEEGLRRGGSPGPRP  48


>gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycobacterium tuberculosis H37Rv]
 gi|15842913|ref|NP_337950.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
 gi|31794502|ref|NP_856995.1| hypothetical protein Mb3350c [Mycobacterium bovis AF2122/97]
 77 more sequence titles
 Length=80

 Score = 38.1 bits (87),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 22/61 (37%), Positives = 29/61 (48%), Gaps = 3/61 (4%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ IDD++   VK +A R  RT   +L D  R+ L    PQ A     Q     G  
Sbjct  1   MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNPQPAAS---QEDAFHGFE  57

Query  61  P  61
           P
Sbjct  58  P  58


>gi|254549713|ref|ZP_05140160.1| hypothetical protein Mtube_04496 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
Length=82

 Score = 37.7 bits (86),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 27/87 (32%), Positives = 50/87 (58%), Gaps = 15/87 (17%)

Query  5   IRIDDELYREVKAKAARSGRTVAAVLEDAVRR--------GLNPPKPQAAGRYRVQPSGK  56
           + I DE+    K +A   G+++ AV+EDA+RR        G +P +P  +    V+  G+
Sbjct  1   MSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGASPDRPDFSTAVPVR--GR  58

Query  57  GGLRPGVDLSSNAALAEAMNDGVSVDA  83
                G+DL+SN AL+E +++G+ +++
Sbjct  59  -----GIDLTSNRALSEVLDEGLELNS  80


>gi|332157926|ref|YP_004423205.1| hypothetical protein PNA2_0283 [Pyrococcus sp. NA2]
 gi|331033389|gb|AEC51201.1| hypothetical protein PNA2_0283 [Pyrococcus sp. NA2]
Length=85

 Score = 37.7 bits (86),  Expect = 0.64, Method: Compositional matrix adjust.
 Identities = 15/35 (43%), Positives = 26/35 (75%), Gaps = 0/35 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVR  35
           V+T++ ID+EL++E +  A R G  V+ +LE+A+R
Sbjct  4   VKTSVYIDEELWKEFRQLALREGSEVSKLLEEAIR  38


>gi|309365241|emb|CAP24062.2| hypothetical protein CBG_02458 [Caenorhabditis briggsae AF16]
Length=1774

 Score = 37.7 bits (86),  Expect = 0.65, Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (57%), Gaps = 4/55 (7%)

Query  23    GRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMND  77
             G T   ++EDA+RRG+  P PQ   R    PSG G +R  V L+SN   + ++ D
Sbjct  1225  GMTDNEIVEDAIRRGMVAPIPQELLR----PSGPGHIRENVHLASNVLGSHSLED  1275


>gi|298529271|ref|ZP_07016674.1| CopG domain protein DNA-binding domain protein [Desulfonatronospira 
thiodismutans ASO3-1]
 gi|298510707|gb|EFI34610.1| CopG domain protein DNA-binding domain protein [Desulfonatronospira 
thiodismutans ASO3-1]
Length=77

 Score = 37.4 bits (85),  Expect = 0.68, Method: Compositional matrix adjust.
 Identities = 16/38 (43%), Positives = 28/38 (74%), Gaps = 1/38 (2%)

Query  2   RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVR-RGL  38
           R TI +DDEL+R +K  +AR GR++  ++E+++  RG+
Sbjct  3   RLTITLDDELHRALKETSARQGRSINKIIEESLHMRGI  40


>gi|298524743|ref|ZP_07012152.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298494537|gb|EFI29831.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=61

 Score = 37.4 bits (85),  Expect = 0.77, Method: Compositional matrix adjust.
 Identities = 21/57 (37%), Positives = 34/57 (60%), Gaps = 2/57 (3%)

Query  29  VLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVSVDAVR  85
           V+ DA+RR L PP  +   +YR++P  +  +R G+DL+    LA+ + D   +DA R
Sbjct  4   VINDALRRALAPPVKRQE-QYRLEPH-ESAVRSGLDLAGFNKLADELEDEALLDATR  58


>gi|268531276|ref|XP_002630764.1| Hypothetical protein CBG02458 [Caenorhabditis briggsae]
Length=1554

 Score = 37.0 bits (84),  Expect = 0.87, Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (57%), Gaps = 4/55 (7%)

Query  23    GRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMND  77
             G T   ++EDA+RRG+  P PQ   R    PSG G +R  V L+SN   + ++ D
Sbjct  1105  GMTDNEIVEDAIRRGMVAPIPQELLR----PSGPGHIRENVHLASNVLGSHSLED  1155


>gi|254430625|ref|ZP_05044328.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
 gi|197625078|gb|EDY37637.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
Length=79

 Score = 37.0 bits (84),  Expect = 0.93, Method: Compositional matrix adjust.
 Identities = 27/79 (35%), Positives = 41/79 (52%), Gaps = 4/79 (5%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYR---VQPSGKG  57
           +RTT+ + D L+  +KA+A   G T+ A+L   V +GL+   P  A R R     P   G
Sbjct  1   MRTTLELPDPLFARLKARAVSQGVTLKALLRSYVEQGLS-AAPDGAPRARSAAALPRLDG  59

Query  58  GLRPGVDLSSNAALAEAMN  76
            L  G +  SNA L + ++
Sbjct  60  PLAIGSEQCSNAGLFDLLD  78


>gi|116073604|ref|ZP_01470866.1| hypothetical protein RS9916_34177 [Synechococcus sp. RS9916]
 gi|116068909|gb|EAU74661.1| hypothetical protein RS9916_34177 [Synechococcus sp. RS9916]
Length=84

 Score = 36.6 bits (83),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 25/78 (33%), Positives = 40/78 (52%), Gaps = 3/78 (3%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQ---PSGKG  57
           +RTT+ + D L+  +KA+AA    ++  +L D V +GL+ P P A    R     P+ + 
Sbjct  5   MRTTLDLPDPLFARLKARAAMKQVSLKQLLHDYVEQGLDAPDPAATPARRSARDLPTLQA  64

Query  58  GLRPGVDLSSNAALAEAM  75
            L+      SNA L E +
Sbjct  65  PLQQQNVTFSNAGLFELL  82


>gi|320108461|ref|YP_004184051.1| hypothetical protein AciPR4_3303 [Terriglobus saanensis SP1PR4]
 gi|319926982|gb|ADV84057.1| hypothetical protein AciPR4_3303 [Terriglobus saanensis SP1PR4]
Length=75

 Score = 36.6 bits (83),  Expect = 1.4, Method: Compositional matrix adjust.
 Identities = 27/81 (34%), Positives = 37/81 (46%), Gaps = 7/81 (8%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           +RTT+ I D  YR +K KAA  GRT+  ++ D V+  L   K +   R    P  K    
Sbjct  1   MRTTVDIPDAEYRLLKVKAAEEGRTIKQLIHDGVKAVLACEKEKKPFRKMKLPLIKSK-N  59

Query  61  PGVDLSSNAALAEAMNDGVSV  81
           PG          E +ND +S 
Sbjct  60  PG------TLTTEMVNDFLSF  74


>gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339632557|ref|YP_004724199.1| hypothetical protein MAF_25460 [Mycobacterium africanum GM041182]
 gi|289539666|gb|EFD44244.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|339331913|emb|CCC27616.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=74

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 0/40 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNP  40
           +RTT++IDD++  +V++ A   G++V AV+ +  RR L P
Sbjct  1   MRTTLQIDDDVLEDVRSIARSEGKSVGAVISELARRSLRP  40


>gi|148660043|ref|YP_001281566.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
 gi|289552531|ref|ZP_06441741.1| antitoxin [Mycobacterium tuberculosis KZN 605]
 gi|148504195|gb|ABQ72004.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
 gi|289437163|gb|EFD19656.1| antitoxin [Mycobacterium tuberculosis KZN 605]
Length=60

 Score = 36.2 bits (82),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 37/59 (63%), Gaps = 2/59 (3%)

Query  26  VAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GLRPGVDLSSNAALAEAMNDGVSVDA  83
           + AV+EDA+RR L   +   A R  V     G G RPG+DL+SN  L+E +++G+ +++
Sbjct  1   MGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNS  58


>gi|322433889|ref|YP_004216101.1| hypothetical protein AciX9_0247 [Acidobacterium sp. MP5ACTX9]
 gi|321161616|gb|ADW67321.1| hypothetical protein AciX9_0247 [Acidobacterium sp. MP5ACTX9]
Length=77

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 16/30 (54%), Positives = 23/30 (77%), Gaps = 0/30 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVL  30
           +RTTI I D +YRE+KA+AAR G +V  ++
Sbjct  1   MRTTIDIPDPIYRELKARAAREGTSVKQII  30


>gi|336288124|gb|AEI30374.1| conserved hypothetical protein [uncultured microorganism]
Length=96

 Score = 36.2 bits (82),  Expect = 1.6, Method: Compositional matrix adjust.
 Identities = 20/71 (29%), Positives = 38/71 (54%), Gaps = 0/71 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR  60
           ++TT++I D L+ E +  A R   T+ A++E+ +RR ++  K +   R R       GL+
Sbjct  1   MKTTVQIPDSLFEEARKVANRERTTLKALIEEGLRRIVSQHKRRNGFRLRKATFKGKGLQ  60

Query  61  PGVDLSSNAAL  71
           P  ++ S  + 
Sbjct  61  PLSEVESQESF  71


>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum 
WSM2075]
 gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87

 Score = 36.2 bits (82),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 27/77 (36%), Positives = 40/77 (52%), Gaps = 4/77 (5%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQP--SGKGG  58
           +RTT+ IDD++    KA A +  R++  V+ D  R+ L   +PQA G     P  S +  
Sbjct  1   MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLR--RPQAGGERNGIPLLSARPD  58

Query  59  LRPGVDLSSNAALAEAM  75
             P VDL    AL +A+
Sbjct  59  DPPLVDLEMINALRDAL  75


>gi|292490752|ref|YP_003526191.1| hypothetical protein Nhal_0622 [Nitrosococcus halophilus Nc4]
 gi|291579347|gb|ADE13804.1| hypothetical protein Nhal_0622 [Nitrosococcus halophilus Nc4]
Length=75

 Score = 35.8 bits (81),  Expect = 2.2, Method: Compositional matrix adjust.
 Identities = 18/46 (40%), Positives = 28/46 (61%), Gaps = 0/46 (0%)

Query  2   RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAG  47
           +TT+ +D++L R  K  AARSGR    ++E+A+RR L     +  G
Sbjct  5   KTTVYLDEDLLRATKVMAARSGRREYQIVEEALRRYLGLESIRTIG  50


>gi|188534449|ref|YP_001908246.1| replication initiation regulator SeqA [Erwinia tasmaniensis Et1/99]
 gi|188029491|emb|CAO97368.1| Negative modulator of initiation of replication [Erwinia tasmaniensis 
Et1/99]
Length=176

 Score = 35.8 bits (81),  Expect = 2.5, Method: Compositional matrix adjust.
 Identities = 17/58 (30%), Positives = 28/58 (49%), Gaps = 0/58 (0%)

Query  4   TIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRP  61
           TI +D+ELYR + +     G + + +L   ++       P  AG    +PS K  +RP
Sbjct  3   TIEVDEELYRYIASHTLHIGESASDILRRMLKFTAGQSAPLTAGASATEPSAKAEVRP  60


>gi|296164380|ref|ZP_06846956.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295900260|gb|EFG79690.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=86

 Score = 35.4 bits (80),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 18/37 (49%), Positives = 24/37 (65%), Gaps = 0/37 (0%)

Query  2   RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGL  38
           +TT+ ID+ L R  K  AARSG+    V EDA++R L
Sbjct  5   KTTVYIDEALLRAAKVAAARSGKREYEVFEDALKRHL  41


>gi|289568188|ref|ZP_06448415.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572856|ref|ZP_06453083.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289748759|ref|ZP_06508137.1| antitoxin [Mycobacterium tuberculosis T92]
 gi|289537287|gb|EFD41865.1| antitoxin [Mycobacterium tuberculosis K85]
 gi|289541941|gb|EFD45590.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289689346|gb|EFD56775.1| antitoxin [Mycobacterium tuberculosis T92]
Length=60

 Score = 35.4 bits (80),  Expect = 3.0, Method: Compositional matrix adjust.
 Identities = 23/59 (39%), Positives = 37/59 (63%), Gaps = 2/59 (3%)

Query  26  VAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GLRPGVDLSSNAALAEAMNDGVSVDA  83
           + AV+EDA+RR L   +   A R  V     G G RPG+DL+SN  L+E +++G+ +++
Sbjct  1   MGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNS  58


>gi|312114704|ref|YP_004012300.1| hypothetical protein Rvan_1965 [Rhodomicrobium vannielii ATCC 
17100]
 gi|311219833|gb|ADP71201.1| hypothetical protein Rvan_1965 [Rhodomicrobium vannielii ATCC 
17100]
Length=112

 Score = 35.4 bits (80),  Expect = 3.1, Method: Compositional matrix adjust.
 Identities = 15/31 (49%), Positives = 23/31 (75%), Gaps = 0/31 (0%)

Query  2   RTTIRIDDELYREVKAKAARSGRTVAAVLED  32
           RT+I ++D  +RE+KA A   GRTVAA++ +
Sbjct  49  RTSITLEDAFWRELKATAEEQGRTVAALVAE  79


>gi|15842141|ref|NP_337178.1| hypothetical protein MT2676 [Mycobacterium tuberculosis CDC1551]
 gi|31793786|ref|NP_856279.1| hypothetical protein Mb2633 [Mycobacterium bovis AF2122/97]
 gi|57117004|ref|YP_177673.1| hypothetical protein Rv2601A [Mycobacterium tuberculosis H37Rv]
 74 more sequence titles
 Length=95

 Score = 34.7 bits (78),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 15/39 (39%), Positives = 27/39 (70%), Gaps = 0/39 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLN  39
           ++TT+ + DEL R +K +AA+ GR +  V+ + +R GL+
Sbjct  1   MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLS  39


>gi|340627619|ref|YP_004746071.1| hypothetical protein MCAN_26441 [Mycobacterium canettii CIPT 
140010059]
 gi|340005809|emb|CCC44975.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=95

 Score = 34.7 bits (78),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 15/39 (39%), Positives = 27/39 (70%), Gaps = 0/39 (0%)

Query  1   VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLN  39
           ++TT+ + DEL R +K +AA+ GR +  V+ + +R GL+
Sbjct  1   MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLS  39



Lambda     K      H
   0.314    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 131466506940


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40