BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2871
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycoba... 165 2e-39
gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tubercu... 164 3e-39
gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_2064... 141 3e-32
gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC ... 140 7e-32
gi|296130775|ref|YP_003638025.1| putative transcriptional regula... 72.4 2e-11
gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [d... 57.4 7e-07
gi|284122510|ref|ZP_06386856.1| conserved hypothetical protein [... 55.5 3e-06
gi|297623625|ref|YP_003705059.1| CopG family transcriptional reg... 55.5 3e-06
gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25 53.9 9e-06
gi|88812000|ref|ZP_01127253.1| hypothetical protein NB231_06406 ... 53.5 1e-05
gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG... 52.8 2e-05
gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [... 52.4 2e-05
gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycoba... 52.4 2e-05
gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycoba... 52.4 3e-05
gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Sy... 50.4 9e-05
gi|289748048|ref|ZP_06507426.1| conserved hypothetical protein [... 48.9 3e-04
gi|297567543|ref|YP_003686515.1| hypothetical protein Mesil_3184... 48.5 4e-04
gi|15840161|ref|NP_335198.1| hypothetical protein MT0772.6 [Myco... 48.1 4e-04
gi|289573366|ref|ZP_06453593.1| antitoxin [Mycobacterium tubercu... 48.1 5e-04
gi|15607888|ref|NP_215262.1| hypothetical protein Rv0748 [Mycoba... 47.8 5e-04
gi|289749257|ref|ZP_06508635.1| conserved hypothetical protein [... 46.6 0.001
gi|240168913|ref|ZP_04747572.1| hypothetical protein MkanA1_0635... 46.2 0.002
gi|87123095|ref|ZP_01078946.1| hypothetical protein RS9917_04530... 42.7 0.017
gi|160898240|ref|YP_001563822.1| antitoxin [Delftia acidovorans ... 40.8 0.070
gi|258593409|emb|CBE69748.1| conserved protein of unknown functi... 40.4 0.096
gi|254172538|ref|ZP_04879213.1| Ribbon-helix-helix protein, copG... 38.9 0.23
gi|336288070|gb|AEI30345.1| CopG domain protein DNA-binding doma... 38.5 0.35
gi|333967819|gb|AEG34583.1| hypothetical protein Ththe16_2214 [T... 38.5 0.35
gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycob... 38.1 0.50
gi|254549713|ref|ZP_05140160.1| hypothetical protein Mtube_04496... 37.7 0.57
gi|332157926|ref|YP_004423205.1| hypothetical protein PNA2_0283 ... 37.7 0.64
gi|309365241|emb|CAP24062.2| hypothetical protein CBG_02458 [Cae... 37.7 0.65
gi|298529271|ref|ZP_07016674.1| CopG domain protein DNA-binding ... 37.4 0.68
gi|298524743|ref|ZP_07012152.1| conserved hypothetical protein [... 37.4 0.77
gi|268531276|ref|XP_002630764.1| Hypothetical protein CBG02458 [... 37.0 0.87
gi|254430625|ref|ZP_05044328.1| conserved hypothetical protein [... 37.0 0.93
gi|116073604|ref|ZP_01470866.1| hypothetical protein RS9916_3417... 36.6 1.1
gi|320108461|ref|YP_004184051.1| hypothetical protein AciPR4_330... 36.6 1.4
gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tubercu... 36.2 1.5
gi|148660043|ref|YP_001281566.1| hypothetical protein MRA_0286 [... 36.2 1.5
gi|322433889|ref|YP_004216101.1| hypothetical protein AciX9_0247... 36.2 1.6
gi|336288124|gb|AEI30374.1| conserved hypothetical protein [uncu... 36.2 1.6
gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461... 36.2 1.9
gi|292490752|ref|YP_003526191.1| hypothetical protein Nhal_0622 ... 35.8 2.2
gi|188534449|ref|YP_001908246.1| replication initiation regulato... 35.8 2.5
gi|296164380|ref|ZP_06846956.1| D-alanine-D-alanine ligase [Myco... 35.4 2.9
gi|289568188|ref|ZP_06448415.1| conserved hypothetical protein [... 35.4 3.0
gi|312114704|ref|YP_004012300.1| hypothetical protein Rvan_1965 ... 35.4 3.1
gi|15842141|ref|NP_337178.1| hypothetical protein MT2676 [Mycoba... 34.7 4.4
gi|340627619|ref|YP_004746071.1| hypothetical protein MCAN_26441... 34.7 4.4
>gi|15610008|ref|NP_217387.1| hypothetical protein Rv2871 [Mycobacterium tuberculosis H37Rv]
gi|31794048|ref|NP_856541.1| hypothetical protein Mb2896 [Mycobacterium bovis AF2122/97]
gi|121638753|ref|YP_978977.1| hypothetical protein BCG_2893 [Mycobacterium bovis BCG str. Pasteur
1173P2]
73 more sequence titles
Length=85
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/85 (99%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR
Sbjct 1 MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
PGVDLSSNAALAEAMNDGVSVDAVR
Sbjct 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
>gi|254551940|ref|ZP_05142387.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=85
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/85 (98%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGG+R
Sbjct 1 MRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGMR 60
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
PGVDLSSNAALAEAMNDGVSVDAVR
Sbjct 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
>gi|240171735|ref|ZP_04750394.1| hypothetical protein MkanA1_20645 [Mycobacterium kansasii ATCC
12478]
Length=86
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/85 (86%), Positives = 78/85 (92%), Gaps = 0/85 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
VRTTIRIDDELYREVKA+AARSGRTVAAVLEDAVR GLNPP AAGRYRVQP G GGLR
Sbjct 2 VRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSGGLR 61
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
PGVDLSSNAA+AEAM++GV VDA+R
Sbjct 62 PGVDLSSNAAVAEAMDEGVPVDALR 86
>gi|157382509|gb|ABV48745.1| Rv2871 [Mycobacterium kansasii ATCC 12478]
Length=85
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/85 (85%), Positives = 78/85 (92%), Gaps = 0/85 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTTIRIDDELYREVKA+AARSGRTVAAVLEDAVR GLNPP AAGRYRVQP G GGLR
Sbjct 1 MRTTIRIDDELYREVKARAARSGRTVAAVLEDAVRCGLNPPGQSAAGRYRVQPIGSGGLR 60
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
PGVDLSSNAA+AEAM++GV VDA+R
Sbjct 61 PGVDLSSNAAVAEAMDEGVPVDALR 85
>gi|296130775|ref|YP_003638025.1| putative transcriptional regulator, CopG family [Cellulomonas
flavigena DSM 20109]
gi|296022590|gb|ADG75826.1| putative transcriptional regulator, CopG family [Cellulomonas
flavigena DSM 20109]
Length=83
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (52%), Positives = 52/77 (68%), Gaps = 1/77 (1%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAA-GRYRVQPSGKGGL 59
+RTT+ + DELYREVKA AARSGRTV +V+EDA+R L + A +R+ G GGL
Sbjct 5 MRTTLHLPDELYREVKAAAARSGRTVTSVVEDALRAELERFRATAERPPFRIDAVGSGGL 64
Query 60 RPGVDLSSNAALAEAMN 76
PGVDL +AAL + +
Sbjct 65 LPGVDLDDSAALLDVLE 81
>gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
gi|93453525|gb|EAT03933.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length=94
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (37%), Positives = 47/77 (62%), Gaps = 0/77 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ IDD+L E++ A RSG+ ++ +A+R+GLN + YR++ S G +R
Sbjct 7 MRTTLTIDDQLSVELREAANRSGKPFKQIVNEALRKGLNALEHPPGRPYRIKSSSLGKVR 66
Query 61 PGVDLSSNAALAEAMND 77
PG++L LA+ + D
Sbjct 67 PGINLDKALGLADGLED 83
>gi|284122510|ref|ZP_06386856.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829354|gb|EFC33750.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
Length=79
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/77 (38%), Positives = 48/77 (63%), Gaps = 2/77 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQ-PSGKGGL 59
+RTT+ +DD LY+ K +A G TV V++DA++ L+ P Q +Y+++ P+ KG L
Sbjct 1 MRTTLNLDDRLYQAAKIRATSEGTTVTQVIQDALKEFLHRPN-QTRSKYKLRWPTQKGRL 59
Query 60 RPGVDLSSNAALAEAMN 76
PGV+ +L +AM+
Sbjct 60 LPGVNPDDRTSLYDAMD 76
>gi|297623625|ref|YP_003705059.1| CopG family transcriptional regulator [Truepera radiovictrix
DSM 17093]
gi|297164805|gb|ADI14516.1| transcriptional regulator, CopG family [Truepera radiovictrix
DSM 17093]
Length=82
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/82 (46%), Positives = 47/82 (58%), Gaps = 9/82 (10%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPK------PQAAGRYRVQPS 54
+RTTIR+DDEL RE K AA + +T+ AV+E+A+R L K P YR
Sbjct 1 MRTTIRLDDELLREAKRLAAETNQTLTAVIEEALRERLARRKGARDRPPFTPKVYR---G 57
Query 55 GKGGLRPGVDLSSNAALAEAMN 76
GL+PGVDL NAAL + M
Sbjct 58 PAKGLQPGVDLDDNAALLDLME 79
>gi|332321844|sp|P0CW33.1|VPB25_MYCTU RecName: Full=Antitoxin VapB25
Length=85
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/84 (40%), Positives = 52/84 (62%), Gaps = 2/84 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL 59
+RTT+ I DEL K +A G+++ AV+EDA+RR L + A R V G G
Sbjct 1 MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP 59
Query 60 RPGVDLSSNAALAEAMNDGVSVDA 83
RPG+DL+SN L+E +++G+ +++
Sbjct 60 RPGIDLTSNTVLSEVLDEGLELNS 83
>gi|88812000|ref|ZP_01127253.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
gi|88790884|gb|EAR21998.1| hypothetical protein NB231_06406 [Nitrococcus mobilis Nb-231]
Length=78
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (39%), Positives = 45/77 (59%), Gaps = 1/77 (1%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL 59
+RTT+ IDD+L KA+AA SG T+A ++EDA+R L+ + + KG G
Sbjct 1 MRTTLNIDDQLLLRAKAQAAVSGVTLAQLIEDALRESLSRRERVEERGRVRIITAKGTGT 60
Query 60 RPGVDLSSNAALAEAMN 76
RPG+DL + +L + M
Sbjct 61 RPGIDLDHSPSLLDIME 77
>gi|121636191|ref|YP_976414.1| antitoxin [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224988664|ref|YP_002643351.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str.
Tokyo 172]
gi|121491838|emb|CAL70300.1| Conserved hypothetical protein, antitoxin [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224771777|dbj|BAH24583.1| hypothetical protein, antitoxin [Mycobacterium bovis BCG str.
Tokyo 172]
gi|341600207|emb|CCC62876.1| conserved hypothetical protein, antitoxin [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=85
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (40%), Positives = 52/84 (62%), Gaps = 2/84 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GL 59
+RTT+ I DEL K +A G+++ AV+EDA+RR L + A R V G G
Sbjct 1 MRTTVSISDELLATAKRRARERGQSLGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGP 59
Query 60 RPGVDLSSNAALAEAMNDGVSVDA 83
RPG+DL+SN L+E +++G+ +++
Sbjct 60 RPGIDLTSNRVLSEVLDEGLELNS 83
>gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289554970|ref|ZP_06444180.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289744986|ref|ZP_06504364.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|134149655|gb|EBA41700.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289439602|gb|EFD22095.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289685514|gb|EFD53002.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|328459460|gb|AEB04883.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length=90
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 2/85 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ +DD++ R V+ R R + V+ DA+RR L PP + +YR++P + +R
Sbjct 5 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR 62
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
G+DL+ LA+ + D +DA R
Sbjct 63 SGLDLAGFNKLADELEDEALLDATR 87
>gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
gi|13880873|gb|AAK45537.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551]
Length=98
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 2/85 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ +DD++ R V+ R R + V+ DA+RR L PP + +YR++P + +R
Sbjct 13 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR 70
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
G+DL+ LA+ + D +DA R
Sbjct 71 SGLDLAGFNKLADELEDEALLDATR 95
>gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycobacterium tuberculosis H37Rv]
gi|31792434|ref|NP_854927.1| hypothetical protein Mb1273 [Mycobacterium bovis AF2122/97]
gi|121637170|ref|YP_977393.1| hypothetical protein BCG_1301 [Mycobacterium bovis BCG str. Pasteur
1173P2]
68 more sequence titles
Length=86
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 50/85 (59%), Gaps = 2/85 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ +DD++ R V+ R R + V+ DA+RR L PP + +YR++P + +R
Sbjct 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQE-QYRLEPH-ESAVR 58
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
G+DL+ LA+ + D +DA R
Sbjct 59 SGLDLAGFNKLADELEDEALLDATR 83
>gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Syntrophobacter fumaroxidans
MPOB]
gi|116697403|gb|ABK16591.1| conserved hypothetical protein [Syntrophobacter fumaroxidans
MPOB]
Length=88
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/78 (36%), Positives = 44/78 (57%), Gaps = 0/78 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ IDDE+ +K A RSG++ V+ DA+R+G + + A YR+ P+ G LR
Sbjct 1 MRTTLTIDDEIAVSLKDLAHRSGKSFRQVVNDALRKGAHALENPEARPYRLSPTSLGLLR 60
Query 61 PGVDLSSNAALAEAMNDG 78
++L LA+ D
Sbjct 61 SNINLDKALNLADEREDA 78
>gi|289748048|ref|ZP_06507426.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289688576|gb|EFD56064.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
Length=88
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (36%), Positives = 52/91 (58%), Gaps = 16/91 (17%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRR--------GLNPPKPQAAGRYRVQ 52
+RTT+ I DE+ K +A G+++ AV+EDA+RR G P P V
Sbjct 4 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVP-------VF 56
Query 53 PSGKGGLRPGVDLSSNAALAEAMNDGVSVDA 83
+G G RPG+DL+SN L+E +++G+ +++
Sbjct 57 DAGTGP-RPGIDLTSNTVLSEVLDEGLELNS 86
>gi|297567543|ref|YP_003686515.1| hypothetical protein Mesil_3184 [Meiothermus silvanus DSM 9946]
gi|296851992|gb|ADH65007.1| hypothetical protein Mesil_3184 [Meiothermus silvanus DSM 9946]
Length=83
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/45 (56%), Positives = 32/45 (72%), Gaps = 2/45 (4%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLN--PPKP 43
++TT+RIDDELYR KA+AAR G T+ LE+A+R L P KP
Sbjct 1 MQTTLRIDDELYRRAKAEAARQGITLTQFLEEALRLRLQYRPGKP 45
>gi|15840161|ref|NP_335198.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
gi|13880314|gb|AAK45012.1| hypothetical protein MT0772.6 [Mycobacterium tuberculosis CDC1551]
Length=88
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 49/85 (58%), Gaps = 4/85 (4%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ I DE+ K +A G+++ AV+EDA+RR G P GG
Sbjct 4 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTVPVFDGGTG 61
Query 61 P--GVDLSSNAALAEAMNDGVSVDA 83
P G+DL+SN AL+E +++G+ +++
Sbjct 62 PRRGIDLTSNRALSEVLDEGLELNS 86
>gi|289573366|ref|ZP_06453593.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339630816|ref|YP_004722458.1| hypothetical protein MAF_07580 [Mycobacterium africanum GM041182]
gi|289537797|gb|EFD42375.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339330172|emb|CCC25830.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=85
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 49/85 (58%), Gaps = 4/85 (4%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ I DE+ K +A G+++ AV+EDA+RR G P GG
Sbjct 1 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTGPVFDGGTG 58
Query 61 P--GVDLSSNAALAEAMNDGVSVDA 83
P G+DL+SN AL+E +++G+ +++
Sbjct 59 PRRGIDLTSNRALSEVLDEGLELNS 83
>gi|15607888|ref|NP_215262.1| hypothetical protein Rv0748 [Mycobacterium tuberculosis H37Rv]
gi|31791934|ref|NP_854427.1| hypothetical protein Mb0769 [Mycobacterium bovis AF2122/97]
gi|121636670|ref|YP_976893.1| hypothetical protein BCG_0798 [Mycobacterium bovis BCG str. Pasteur
1173P2]
59 more sequence titles
Length=85
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/85 (36%), Positives = 49/85 (58%), Gaps = 4/85 (4%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ I DE+ K +A G+++ AV+EDA+RR G P GG
Sbjct 1 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTVPVFDGGTG 58
Query 61 P--GVDLSSNAALAEAMNDGVSVDA 83
P G+DL+SN AL+E +++G+ +++
Sbjct 59 PRRGIDLTSNRALSEVLDEGLELNS 83
>gi|289749257|ref|ZP_06508635.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289689844|gb|EFD57273.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=85
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (35%), Positives = 48/85 (57%), Gaps = 4/85 (4%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ I DE+ K +A G+++ AV+EDA+RR G P GG
Sbjct 1 MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREF--AAAHVGGARPTVPVFDGGTG 58
Query 61 P--GVDLSSNAALAEAMNDGVSVDA 83
P G+DL+SN L+E +++G+ +++
Sbjct 59 PRRGIDLTSNRVLSEVLDEGLELNS 83
>gi|240168913|ref|ZP_04747572.1| hypothetical protein MkanA1_06350 [Mycobacterium kansasii ATCC
12478]
Length=93
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (31%), Positives = 46/85 (55%), Gaps = 2/85 (2%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ +DD++ R ++ R R + V+ DA+R+ L P + Y+++P + +R
Sbjct 8 MRTTLTLDDDVVRLIEEAVHRERRPMKHVINDALRKALAQPMERRTP-YQLKPH-RSAVR 65
Query 61 PGVDLSSNAALAEAMNDGVSVDAVR 85
PG D + LA+ M D +D R
Sbjct 66 PGFDFAGFNRLADEMEDQAILDQKR 90
>gi|87123095|ref|ZP_01078946.1| hypothetical protein RS9917_04530 [Synechococcus sp. RS9917]
gi|86168815|gb|EAQ70071.1| hypothetical protein RS9917_04530 [Synechococcus sp. RS9917]
Length=79
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/80 (37%), Positives = 43/80 (54%), Gaps = 6/80 (7%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGR--YRVQPSGKGG 58
+RTT+ + D L+ +KA+AAR T+ +L+ V +GL P P + R P +G
Sbjct 1 MRTTLELPDPLFARLKARAAREQLTLKQLLQHYVEQGLEAPTPSTTAQRSARQLPRLEGQ 60
Query 59 LRPGVDLS--SNAALAEAMN 76
L +D S SNAAL E +
Sbjct 61 L--AIDSSRVSNAALFELLE 78
>gi|160898240|ref|YP_001563822.1| antitoxin [Delftia acidovorans SPH-1]
gi|160363824|gb|ABX35437.1| conserved hypothetical protein, antitoxin [Delftia acidovorans
SPH-1]
Length=81
Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/76 (37%), Positives = 43/76 (57%), Gaps = 4/76 (5%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQP--SGKGG 58
++TT+ ++D L E K AA+ ++ ++E+ ++ L K QA R P GKGG
Sbjct 1 MKTTLDLNDALLTEAKTYAAQQHTSLTRLIEEGLQLRLR--KAQAPARRVRLPVYHGKGG 58
Query 59 LRPGVDLSSNAALAEA 74
L PG+D SN AL +A
Sbjct 59 LAPGLDALSNRALLDA 74
>gi|258593409|emb|CBE69748.1| conserved protein of unknown function [NC10 bacterium 'Dutch
sediment']
Length=81
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/80 (33%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRV-QPSGKG-G 58
++TTI + D L R+ + AA G T+ A++E+ +RR L + + GR+ + + + KG G
Sbjct 1 MKTTIEVTDTLLRDARQLAANEGTTLRALVEEGLRRIL--AEREQGGRFHLRKATFKGSG 58
Query 59 LRPGVDLSSNAALAEAMNDG 78
L+PG+ +S + E + +G
Sbjct 59 LQPGLTTASWDRIREMIYEG 78
>gi|254172538|ref|ZP_04879213.1| Ribbon-helix-helix protein, copG family [Thermococcus sp. AM4]
gi|214033467|gb|EEB74294.1| Ribbon-helix-helix protein, copG family [Thermococcus sp. AM4]
Length=85
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (46%), Positives = 26/35 (75%), Gaps = 0/35 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVR 35
V+T++ +D+EL+RE K A R G V+ +LE+A+R
Sbjct 4 VKTSVYVDEELWREFKELALREGSEVSKLLEEAIR 38
>gi|336288070|gb|AEI30345.1| CopG domain protein DNA-binding domain protein [uncultured microorganism]
Length=78
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/76 (33%), Positives = 40/76 (53%), Gaps = 7/76 (9%)
Query 2 RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRP 61
R TI +DD L+R +K A R GR++ +++E+++R L + QA R V + R
Sbjct 3 RLTITLDDNLHRALKETAVRQGRSITSIIEESLR--LRGIRDQAGARDLVNQA-----RE 55
Query 62 GVDLSSNAALAEAMND 77
L AL A+N+
Sbjct 56 RASLGEEEALELAVNE 71
>gi|333967819|gb|AEG34583.1| hypothetical protein Ththe16_2214 [Thermus thermophilus SG0.5JP17-16]
Length=80
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/48 (46%), Positives = 32/48 (67%), Gaps = 5/48 (10%)
Query 1 VRTTIRIDDELYREVKAKAARSGRT----VAAVLEDAVRRGLNP-PKP 43
+RTT+ + D LYR +K +AAR G+T V LE+ +RRG +P P+P
Sbjct 1 MRTTLDLPDPLYRRLKLQAAREGKTLRELVIRYLEEGLRRGGSPGPRP 48
>gi|15610457|ref|NP_217838.1| hypothetical protein Rv3321c [Mycobacterium tuberculosis H37Rv]
gi|15842913|ref|NP_337950.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|31794502|ref|NP_856995.1| hypothetical protein Mb3350c [Mycobacterium bovis AF2122/97]
77 more sequence titles
Length=80
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/61 (37%), Positives = 29/61 (48%), Gaps = 3/61 (4%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ IDD++ VK +A R RT +L D R+ L PQ A Q G
Sbjct 1 MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNPQPAAS---QEDAFHGFE 57
Query 61 P 61
P
Sbjct 58 P 58
>gi|254549713|ref|ZP_05140160.1| hypothetical protein Mtube_04496 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=82
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (32%), Positives = 50/87 (58%), Gaps = 15/87 (17%)
Query 5 IRIDDELYREVKAKAARSGRTVAAVLEDAVRR--------GLNPPKPQAAGRYRVQPSGK 56
+ I DE+ K +A G+++ AV+EDA+RR G +P +P + V+ G+
Sbjct 1 MSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGASPDRPDFSTAVPVR--GR 58
Query 57 GGLRPGVDLSSNAALAEAMNDGVSVDA 83
G+DL+SN AL+E +++G+ +++
Sbjct 59 -----GIDLTSNRALSEVLDEGLELNS 80
>gi|332157926|ref|YP_004423205.1| hypothetical protein PNA2_0283 [Pyrococcus sp. NA2]
gi|331033389|gb|AEC51201.1| hypothetical protein PNA2_0283 [Pyrococcus sp. NA2]
Length=85
Score = 37.7 bits (86), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/35 (43%), Positives = 26/35 (75%), Gaps = 0/35 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVR 35
V+T++ ID+EL++E + A R G V+ +LE+A+R
Sbjct 4 VKTSVYIDEELWKEFRQLALREGSEVSKLLEEAIR 38
>gi|309365241|emb|CAP24062.2| hypothetical protein CBG_02458 [Caenorhabditis briggsae AF16]
Length=1774
Score = 37.7 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (57%), Gaps = 4/55 (7%)
Query 23 GRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMND 77
G T ++EDA+RRG+ P PQ R PSG G +R V L+SN + ++ D
Sbjct 1225 GMTDNEIVEDAIRRGMVAPIPQELLR----PSGPGHIRENVHLASNVLGSHSLED 1275
>gi|298529271|ref|ZP_07016674.1| CopG domain protein DNA-binding domain protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510707|gb|EFI34610.1| CopG domain protein DNA-binding domain protein [Desulfonatronospira
thiodismutans ASO3-1]
Length=77
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/38 (43%), Positives = 28/38 (74%), Gaps = 1/38 (2%)
Query 2 RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVR-RGL 38
R TI +DDEL+R +K +AR GR++ ++E+++ RG+
Sbjct 3 RLTITLDDELHRALKETSARQGRSINKIIEESLHMRGI 40
>gi|298524743|ref|ZP_07012152.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
gi|298494537|gb|EFI29831.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=61
Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/57 (37%), Positives = 34/57 (60%), Gaps = 2/57 (3%)
Query 29 VLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVSVDAVR 85
V+ DA+RR L PP + +YR++P + +R G+DL+ LA+ + D +DA R
Sbjct 4 VINDALRRALAPPVKRQE-QYRLEPH-ESAVRSGLDLAGFNKLADELEDEALLDATR 58
>gi|268531276|ref|XP_002630764.1| Hypothetical protein CBG02458 [Caenorhabditis briggsae]
Length=1554
Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (57%), Gaps = 4/55 (7%)
Query 23 GRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMND 77
G T ++EDA+RRG+ P PQ R PSG G +R V L+SN + ++ D
Sbjct 1105 GMTDNEIVEDAIRRGMVAPIPQELLR----PSGPGHIRENVHLASNVLGSHSLED 1155
>gi|254430625|ref|ZP_05044328.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
gi|197625078|gb|EDY37637.1| conserved hypothetical protein [Cyanobium sp. PCC 7001]
Length=79
Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/79 (35%), Positives = 41/79 (52%), Gaps = 4/79 (5%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYR---VQPSGKG 57
+RTT+ + D L+ +KA+A G T+ A+L V +GL+ P A R R P G
Sbjct 1 MRTTLELPDPLFARLKARAVSQGVTLKALLRSYVEQGLS-AAPDGAPRARSAAALPRLDG 59
Query 58 GLRPGVDLSSNAALAEAMN 76
L G + SNA L + ++
Sbjct 60 PLAIGSEQCSNAGLFDLLD 78
>gi|116073604|ref|ZP_01470866.1| hypothetical protein RS9916_34177 [Synechococcus sp. RS9916]
gi|116068909|gb|EAU74661.1| hypothetical protein RS9916_34177 [Synechococcus sp. RS9916]
Length=84
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (33%), Positives = 40/78 (52%), Gaps = 3/78 (3%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQ---PSGKG 57
+RTT+ + D L+ +KA+AA ++ +L D V +GL+ P P A R P+ +
Sbjct 5 MRTTLDLPDPLFARLKARAAMKQVSLKQLLHDYVEQGLDAPDPAATPARRSARDLPTLQA 64
Query 58 GLRPGVDLSSNAALAEAM 75
L+ SNA L E +
Sbjct 65 PLQQQNVTFSNAGLFELL 82
>gi|320108461|ref|YP_004184051.1| hypothetical protein AciPR4_3303 [Terriglobus saanensis SP1PR4]
gi|319926982|gb|ADV84057.1| hypothetical protein AciPR4_3303 [Terriglobus saanensis SP1PR4]
Length=75
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/81 (34%), Positives = 37/81 (46%), Gaps = 7/81 (8%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
+RTT+ I D YR +K KAA GRT+ ++ D V+ L K + R P K
Sbjct 1 MRTTVDIPDAEYRLLKVKAAEEGRTIKQLIHDGVKAVLACEKEKKPFRKMKLPLIKSK-N 59
Query 61 PGVDLSSNAALAEAMNDGVSV 81
PG E +ND +S
Sbjct 60 PG------TLTTEMVNDFLSF 74
>gi|289575235|ref|ZP_06455462.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339632557|ref|YP_004724199.1| hypothetical protein MAF_25460 [Mycobacterium africanum GM041182]
gi|289539666|gb|EFD44244.1| antitoxin [Mycobacterium tuberculosis K85]
gi|339331913|emb|CCC27616.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
Length=74
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 0/40 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNP 40
+RTT++IDD++ +V++ A G++V AV+ + RR L P
Sbjct 1 MRTTLQIDDDVLEDVRSIARSEGKSVGAVISELARRSLRP 40
>gi|148660043|ref|YP_001281566.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
gi|289552531|ref|ZP_06441741.1| antitoxin [Mycobacterium tuberculosis KZN 605]
gi|148504195|gb|ABQ72004.1| hypothetical protein MRA_0286 [Mycobacterium tuberculosis H37Ra]
gi|289437163|gb|EFD19656.1| antitoxin [Mycobacterium tuberculosis KZN 605]
Length=60
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 37/59 (63%), Gaps = 2/59 (3%)
Query 26 VAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GLRPGVDLSSNAALAEAMNDGVSVDA 83
+ AV+EDA+RR L + A R V G G RPG+DL+SN L+E +++G+ +++
Sbjct 1 MGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGPRPGIDLTSNTVLSEVLDEGLELNS 58
>gi|322433889|ref|YP_004216101.1| hypothetical protein AciX9_0247 [Acidobacterium sp. MP5ACTX9]
gi|321161616|gb|ADW67321.1| hypothetical protein AciX9_0247 [Acidobacterium sp. MP5ACTX9]
Length=77
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/30 (54%), Positives = 23/30 (77%), Gaps = 0/30 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVL 30
+RTTI I D +YRE+KA+AAR G +V ++
Sbjct 1 MRTTIDIPDPIYRELKARAAREGTSVKQII 30
>gi|336288124|gb|AEI30374.1| conserved hypothetical protein [uncultured microorganism]
Length=96
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (29%), Positives = 38/71 (54%), Gaps = 0/71 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLR 60
++TT++I D L+ E + A R T+ A++E+ +RR ++ K + R R GL+
Sbjct 1 MKTTVQIPDSLFEEARKVANRERTTLKALIEEGLRRIVSQHKRRNGFRLRKATFKGKGLQ 60
Query 61 PGVDLSSNAAL 71
P ++ S +
Sbjct 61 PLSEVESQESF 71
>gi|337267946|ref|YP_004612001.1| hypothetical protein Mesop_3461 [Mesorhizobium opportunistum
WSM2075]
gi|336028256|gb|AEH87907.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075]
Length=87
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/77 (36%), Positives = 40/77 (52%), Gaps = 4/77 (5%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQP--SGKGG 58
+RTT+ IDD++ KA A + R++ V+ D R+ L +PQA G P S +
Sbjct 1 MRTTLAIDDDVLLAAKAMARQQDRSIGEVISDLARQSLR--RPQAGGERNGIPLLSARPD 58
Query 59 LRPGVDLSSNAALAEAM 75
P VDL AL +A+
Sbjct 59 DPPLVDLEMINALRDAL 75
>gi|292490752|ref|YP_003526191.1| hypothetical protein Nhal_0622 [Nitrosococcus halophilus Nc4]
gi|291579347|gb|ADE13804.1| hypothetical protein Nhal_0622 [Nitrosococcus halophilus Nc4]
Length=75
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (40%), Positives = 28/46 (61%), Gaps = 0/46 (0%)
Query 2 RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAG 47
+TT+ +D++L R K AARSGR ++E+A+RR L + G
Sbjct 5 KTTVYLDEDLLRATKVMAARSGRREYQIVEEALRRYLGLESIRTIG 50
>gi|188534449|ref|YP_001908246.1| replication initiation regulator SeqA [Erwinia tasmaniensis Et1/99]
gi|188029491|emb|CAO97368.1| Negative modulator of initiation of replication [Erwinia tasmaniensis
Et1/99]
Length=176
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (30%), Positives = 28/58 (49%), Gaps = 0/58 (0%)
Query 4 TIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRP 61
TI +D+ELYR + + G + + +L ++ P AG +PS K +RP
Sbjct 3 TIEVDEELYRYIASHTLHIGESASDILRRMLKFTAGQSAPLTAGASATEPSAKAEVRP 60
>gi|296164380|ref|ZP_06846956.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900260|gb|EFG79690.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=86
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/37 (49%), Positives = 24/37 (65%), Gaps = 0/37 (0%)
Query 2 RTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGL 38
+TT+ ID+ L R K AARSG+ V EDA++R L
Sbjct 5 KTTVYIDEALLRAAKVAAARSGKREYEVFEDALKRHL 41
>gi|289568188|ref|ZP_06448415.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289572856|ref|ZP_06453083.1| antitoxin [Mycobacterium tuberculosis K85]
gi|289748759|ref|ZP_06508137.1| antitoxin [Mycobacterium tuberculosis T92]
gi|289537287|gb|EFD41865.1| antitoxin [Mycobacterium tuberculosis K85]
gi|289541941|gb|EFD45590.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289689346|gb|EFD56775.1| antitoxin [Mycobacterium tuberculosis T92]
Length=60
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/59 (39%), Positives = 37/59 (63%), Gaps = 2/59 (3%)
Query 26 VAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKG-GLRPGVDLSSNAALAEAMNDGVSVDA 83
+ AV+EDA+RR L + A R V G G RPG+DL+SN L+E +++G+ +++
Sbjct 1 MGAVIEDALRRELAAARTGGA-RPTVPVFDAGTGPRPGIDLTSNRVLSEVLDEGLELNS 58
>gi|312114704|ref|YP_004012300.1| hypothetical protein Rvan_1965 [Rhodomicrobium vannielii ATCC
17100]
gi|311219833|gb|ADP71201.1| hypothetical protein Rvan_1965 [Rhodomicrobium vannielii ATCC
17100]
Length=112
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (49%), Positives = 23/31 (75%), Gaps = 0/31 (0%)
Query 2 RTTIRIDDELYREVKAKAARSGRTVAAVLED 32
RT+I ++D +RE+KA A GRTVAA++ +
Sbjct 49 RTSITLEDAFWRELKATAEEQGRTVAALVAE 79
>gi|15842141|ref|NP_337178.1| hypothetical protein MT2676 [Mycobacterium tuberculosis CDC1551]
gi|31793786|ref|NP_856279.1| hypothetical protein Mb2633 [Mycobacterium bovis AF2122/97]
gi|57117004|ref|YP_177673.1| hypothetical protein Rv2601A [Mycobacterium tuberculosis H37Rv]
74 more sequence titles
Length=95
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/39 (39%), Positives = 27/39 (70%), Gaps = 0/39 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLN 39
++TT+ + DEL R +K +AA+ GR + V+ + +R GL+
Sbjct 1 MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLS 39
>gi|340627619|ref|YP_004746071.1| hypothetical protein MCAN_26441 [Mycobacterium canettii CIPT
140010059]
gi|340005809|emb|CCC44975.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=95
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/39 (39%), Positives = 27/39 (70%), Gaps = 0/39 (0%)
Query 1 VRTTIRIDDELYREVKAKAARSGRTVAAVLEDAVRRGLN 39
++TT+ + DEL R +K +AA+ GR + V+ + +R GL+
Sbjct 1 MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLS 39
Lambda K H
0.314 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131466506940
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40