BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2876
Length=104
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610013|ref|NP_217392.1| transmembrane protein [Mycobacteriu... 209 1e-52
gi|289448543|ref|ZP_06438287.1| conserved membrane protein [Myco... 208 3e-52
gi|31794053|ref|NP_856546.1| transmembrane protein [Mycobacteriu... 205 1e-51
gi|121638758|ref|YP_978982.1| putative transmembrane protein [My... 203 8e-51
gi|254819033|ref|ZP_05224034.1| transmembrane protein [Mycobacte... 150 8e-35
gi|296171526|ref|ZP_06852790.1| transmembrane protein [Mycobacte... 140 9e-32
gi|342858277|ref|ZP_08714932.1| hypothetical protein MCOL_05366 ... 135 2e-30
gi|240171733|ref|ZP_04750392.1| transmembrane protein [Mycobacte... 128 3e-28
gi|15827832|ref|NP_302095.1| hypothetical protein ML1584 [Mycoba... 125 2e-27
gi|333991236|ref|YP_004523850.1| transmembrane protein [Mycobact... 122 2e-26
gi|118467927|ref|YP_886912.1| hypothetical protein MSMEG_2575 [M... 95.1 3e-18
gi|157382511|gb|ABV48747.1| Rv2876 [Mycobacterium kansasii ATCC ... 86.7 1e-15
gi|169630256|ref|YP_001703905.1| hypothetical protein MAB_3174 [... 82.8 2e-14
gi|108799004|ref|YP_639201.1| hypothetical protein Mmcs_2037 [My... 79.0 2e-13
gi|312139246|ref|YP_004006582.1| integral membrane protein [Rhod... 72.4 2e-11
gi|120403246|ref|YP_953075.1| putative transmembrane protein [My... 70.5 8e-11
gi|289763054|ref|ZP_06522432.1| LOW QUALITY PROTEIN: conserved h... 69.7 1e-10
gi|226366030|ref|YP_002783813.1| hypothetical protein ROP_66210 ... 68.9 2e-10
gi|111023546|ref|YP_706518.1| hypothetical protein RHA1_ro06587 ... 67.4 6e-10
gi|145224668|ref|YP_001135346.1| hypothetical protein Mflv_4088 ... 67.4 6e-10
gi|343926734|ref|ZP_08766231.1| hypothetical protein GOALK_068_0... 63.9 7e-09
gi|54026092|ref|YP_120334.1| hypothetical protein nfa41210 [Noca... 63.2 1e-08
gi|229491424|ref|ZP_04385248.1| conserved hypothetical protein [... 62.0 3e-08
gi|226306038|ref|YP_002765998.1| hypothetical protein RER_25510 ... 62.0 3e-08
gi|262202049|ref|YP_003273257.1| hypothetical protein Gbro_2115 ... 60.5 7e-08
gi|317506003|ref|ZP_07963833.1| hypothetical protein HMPREF9336_... 57.4 7e-07
gi|172040510|ref|YP_001800224.1| hypothetical protein cur_0830 [... 57.4 7e-07
gi|68536245|ref|YP_250950.1| hypothetical protein jk1168 [Coryne... 56.6 1e-06
gi|296139394|ref|YP_003646637.1| hypothetical protein Tpau_1679 ... 55.1 4e-06
gi|334564571|ref|ZP_08517562.1| hypothetical protein CbovD2_0834... 53.1 1e-05
gi|337291021|ref|YP_004630042.1| hypothetical protein CULC22_014... 52.4 2e-05
gi|326382906|ref|ZP_08204596.1| hypothetical protein SCNU_08203 ... 52.4 2e-05
gi|336325811|ref|YP_004605777.1| hypothetical protein CRES_1258 ... 52.4 2e-05
gi|237785745|ref|YP_002906450.1| hypothetical protein ckrop_1162... 52.0 3e-05
gi|300858723|ref|YP_003783706.1| hypothetical protein cpfrc_0130... 51.2 4e-05
gi|38234080|ref|NP_939847.1| hypothetical protein DIP1501 [Coryn... 50.8 6e-05
gi|340794658|ref|YP_004760121.1| hypothetical protein CVAR_1696 ... 50.4 8e-05
gi|305680862|ref|ZP_07403669.1| conserved hypothetical protein [... 48.9 2e-04
gi|300780940|ref|ZP_07090794.1| conserved hypothetical protein [... 48.5 3e-04
gi|213964512|ref|ZP_03392712.1| conserved hypothetical protein [... 48.5 3e-04
gi|227488625|ref|ZP_03918941.1| conserved hypothetical protein [... 47.8 5e-04
gi|255325231|ref|ZP_05366337.1| conserved hypothetical protein [... 47.8 6e-04
gi|311739705|ref|ZP_07713540.1| conserved hypothetical protein [... 47.8 6e-04
gi|259507522|ref|ZP_05750422.1| membrane protein [Corynebacteriu... 46.2 0.001
gi|227504806|ref|ZP_03934855.1| conserved hypothetical protein [... 46.2 0.001
gi|25028462|ref|NP_738516.1| hypothetical protein CE1906 [Coryne... 46.2 0.002
gi|296394686|ref|YP_003659570.1| hypothetical protein Srot_2289 ... 46.2 0.002
gi|227833377|ref|YP_002835084.1| putative secreted protein [Cory... 45.8 0.002
gi|302525238|ref|ZP_07277580.1| predicted protein [Streptomyces ... 45.8 0.002
gi|319948051|ref|ZP_08022225.1| hypothetical protein ES5_01929 [... 45.8 0.002
>gi|15610013|ref|NP_217392.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|148662720|ref|YP_001284243.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
gi|148824066|ref|YP_001288820.1| transmembrane protein [Mycobacterium tuberculosis F11]
65 more sequence titles
Length=104
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF 60
MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF
Sbjct 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF 60
Query 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR
Sbjct 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
>gi|289448543|ref|ZP_06438287.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
gi|289421501|gb|EFD18702.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
Length=104
Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)
Query 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF 60
MFGQWEFDVSPTGGIAVA+TEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF
Sbjct 1 MFGQWEFDVSPTGGIAVANTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF 60
Query 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR
Sbjct 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
>gi|31794053|ref|NP_856546.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|289575582|ref|ZP_06455809.1| transmembrane protein [Mycobacterium tuberculosis K85]
gi|339632885|ref|YP_004724527.1| hypothetical protein MAF_28810 [Mycobacterium africanum GM041182]
gi|31619648|emb|CAD96588.1| POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|289540013|gb|EFD44591.1| transmembrane protein [Mycobacterium tuberculosis K85]
gi|339332241|emb|CCC27951.1| putative conserved transmembrane protein [Mycobacterium africanum
GM041182]
Length=104
Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/104 (99%), Positives = 103/104 (99%), Gaps = 0/104 (0%)
Query 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF 60
MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWG SRIDHRTWHIVGLCIF
Sbjct 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGRSRIDHRTWHIVGLCIF 60
Query 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR
Sbjct 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
>gi|121638758|ref|YP_978982.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224991250|ref|YP_002645939.1| possible conserved transmembrane protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|121494406|emb|CAL72887.1| Possible conserved transmembrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774365|dbj|BAH27171.1| possible conserved transmembrane protein [Mycobacterium bovis
BCG str. Tokyo 172]
gi|341602796|emb|CCC65474.1| possible conserved transmembrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
Length=104
Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 102/104 (99%), Positives = 102/104 (99%), Gaps = 0/104 (0%)
Query 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIF 60
MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWG SRIDHRTWHIVGLCIF
Sbjct 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGRSRIDHRTWHIVGLCIF 60
Query 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRR WIR
Sbjct 61 GFLLAMLRGNHVGHVEDWFLITFAAVVLFVLARDLWGRRRDWIR 104
>gi|254819033|ref|ZP_05224034.1| transmembrane protein [Mycobacterium intracellulare ATCC 13950]
Length=119
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/91 (84%), Positives = 80/91 (88%), Gaps = 4/91 (4%)
Query 14 GIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVG 73
G AVASTEVEHF G VD+ EVPSAAWGWSRI+HRTWHIVGLCIFG LLAMLRGNHVG
Sbjct 33 GFAVASTEVEHFTG----VDSVEVPSAAWGWSRINHRTWHIVGLCIFGLLLAMLRGNHVG 88
Query 74 HVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
H+EDWFLI FAA+VL VL RDLWGRRRGWIR
Sbjct 89 HIEDWFLIGFAALVLVVLIRDLWGRRRGWIR 119
>gi|296171526|ref|ZP_06852790.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894088|gb|EFG73849.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=84
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/88 (80%), Positives = 76/88 (87%), Gaps = 4/88 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTEVEHF G VD EVPSAAWGWSRI+HRTWHI GL IFGFLLAMLRGNHVG++E
Sbjct 1 MASTEVEHFTG----VDPVEVPSAAWGWSRINHRTWHITGLVIFGFLLAMLRGNHVGNIE 56
Query 77 DWFLITFAAVVLFVLARDLWGRRRGWIR 104
+W+LI FAAV LFVL RDLWGRRRGWIR
Sbjct 57 NWYLIGFAAVALFVLIRDLWGRRRGWIR 84
>gi|342858277|ref|ZP_08714932.1| hypothetical protein MCOL_05366 [Mycobacterium colombiense CECT
3035]
gi|342133981|gb|EGT87161.1| hypothetical protein MCOL_05366 [Mycobacterium colombiense CECT
3035]
Length=84
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/88 (78%), Positives = 74/88 (85%), Gaps = 4/88 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTEVEHF G VD EVPSAAWGWSRI+HRTWHI GL FGFLLAMLRGNHVGH+E
Sbjct 1 MASTEVEHFNG----VDAVEVPSAAWGWSRINHRTWHIAGLIGFGFLLAMLRGNHVGHIE 56
Query 77 DWFLITFAAVVLFVLARDLWGRRRGWIR 104
+WFLI FAA++L L RDLWGRRRGWIR
Sbjct 57 NWFLIGFAALILVALIRDLWGRRRGWIR 84
>gi|240171733|ref|ZP_04750392.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=84
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/88 (80%), Positives = 75/88 (86%), Gaps = 4/88 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTEVE + G VD AEVPSA WGWSRI+HRTWHIVGL IF FLLAMLRGNHVGHVE
Sbjct 1 MASTEVEQYTG----VDPAEVPSAKWGWSRINHRTWHIVGLGIFVFLLAMLRGNHVGHVE 56
Query 77 DWFLITFAAVVLFVLARDLWGRRRGWIR 104
DWFLI FAA+VL VL RDLWGRRRGW+R
Sbjct 57 DWFLIGFAALVLVVLVRDLWGRRRGWLR 84
>gi|15827832|ref|NP_302095.1| hypothetical protein ML1584 [Mycobacterium leprae TN]
gi|221230309|ref|YP_002503725.1| hypothetical protein MLBr_01584 [Mycobacterium leprae Br4923]
gi|18202763|sp|Q9CBU2.1|Y1584_MYCLE RecName: Full=Uncharacterized protein ML1584
gi|13093384|emb|CAC30535.1| possible conserved membrane protein [Mycobacterium leprae]
gi|219933416|emb|CAR71679.1| possible conserved membrane protein [Mycobacterium leprae Br4923]
Length=84
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/88 (74%), Positives = 71/88 (81%), Gaps = 4/88 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTE EH AG VD AEVPS AWGWSRI+H TWHIVGL G LLAMLRGNH+GHVE
Sbjct 1 MASTEGEHNAG----VDPAEVPSVAWGWSRINHHTWHIVGLFAIGLLLAMLRGNHIGHVE 56
Query 77 DWFLITFAAVVLFVLARDLWGRRRGWIR 104
+W+LI FAA+V FVL RDL GRRRGWIR
Sbjct 57 NWYLIGFAALVFFVLIRDLLGRRRGWIR 84
>gi|333991236|ref|YP_004523850.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333487204|gb|AEF36596.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=83
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/88 (69%), Positives = 72/88 (82%), Gaps = 5/88 (5%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTEVE + VDTAEVPSAAWGWS I++RTWHI GL I GFLL MLRGNH+GHVE
Sbjct 1 MASTEVE-----RRSVDTAEVPSAAWGWSAINYRTWHIFGLVIVGFLLLMLRGNHIGHVE 55
Query 77 DWFLITFAAVVLFVLARDLWGRRRGWIR 104
D+FL+ FAA+ LFV+ RD+ GR+RGW+R
Sbjct 56 DYFLLGFAALSLFVILRDMIGRKRGWLR 83
>gi|118467927|ref|YP_886912.1| hypothetical protein MSMEG_2575 [Mycobacterium smegmatis str.
MC2 155]
gi|118169214|gb|ABK70110.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=84
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/88 (58%), Positives = 61/88 (70%), Gaps = 4/88 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+A+TEVE G VD +VPSA WGWS + HI GL FLL M+RGNHVGHVE
Sbjct 1 MANTEVERHTG----VDVEDVPSAEWGWSHMPIGVMHIGGLLSAAFLLVMMRGNHVGHVE 56
Query 77 DWFLITFAAVVLFVLARDLWGRRRGWIR 104
DWFLI FAAV++ ++ R+ W RRRGWIR
Sbjct 57 DWFLIGFAAVIVALVGRNWWLRRRGWIR 84
>gi|157382511|gb|ABV48747.1| Rv2876 [Mycobacterium kansasii ATCC 12478]
Length=72
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/57 (78%), Positives = 47/57 (83%), Gaps = 4/57 (7%)
Query 12 TGGIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLR 68
TGG+AVASTEVE + G VD AEVPSA WGWSRI+HRTWHIVGL IF FLLAMLR
Sbjct 18 TGGVAVASTEVEQYTG----VDPAEVPSAKWGWSRINHRTWHIVGLGIFVFLLAMLR 70
>gi|169630256|ref|YP_001703905.1| hypothetical protein MAB_3174 [Mycobacterium abscessus ATCC 19977]
gi|169242223|emb|CAM63251.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=112
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 61/94 (65%), Gaps = 6/94 (6%)
Query 13 GGIAVASTEVEHFAGSQHEVDTAEVPSAAWG--WSRIDHRTWHIVGLCIFGFLLAMLRGN 70
GG+AVA+TEV + G VD +VPS A+G S + R +H++G+ + LL ML GN
Sbjct 23 GGLAVATTEVVKYDG----VDVEDVPSVAFGRGLSGQNPRVFHVLGVVMAAILLLMLIGN 78
Query 71 HVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
HVG VED FL+ FAA+VL A D +GRR G IR
Sbjct 79 HVGKVEDIFLVGFAAIVLAFTANDYFGRRSGRIR 112
>gi|108799004|ref|YP_639201.1| hypothetical protein Mmcs_2037 [Mycobacterium sp. MCS]
gi|119868119|ref|YP_938071.1| hypothetical protein Mkms_2083 [Mycobacterium sp. KMS]
gi|126434607|ref|YP_001070298.1| hypothetical protein Mjls_2020 [Mycobacterium sp. JLS]
gi|108769423|gb|ABG08145.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
gi|119694208|gb|ABL91281.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
gi|126234407|gb|ABN97807.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=96
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/89 (59%), Positives = 60/89 (68%), Gaps = 4/89 (4%)
Query 16 AVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHV 75
+VA+TEVE G VD +VPSA WGWS+ + R HI L FLL MLRGNHVG V
Sbjct 12 SVANTEVERHTG----VDVEDVPSAQWGWSKENPRVIHISLLLGAAFLLLMLRGNHVGRV 67
Query 76 EDWFLITFAAVVLFVLARDLWGRRRGWIR 104
ED FLI FAAV++ +ARD W RRRGW R
Sbjct 68 EDAFLIGFAAVLVGWVARDWWMRRRGWTR 96
>gi|312139246|ref|YP_004006582.1| integral membrane protein [Rhodococcus equi 103S]
gi|325673449|ref|ZP_08153140.1| transmembrane protein [Rhodococcus equi ATCC 33707]
gi|311888585|emb|CBH47897.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325555470|gb|EGD25141.1| transmembrane protein [Rhodococcus equi ATCC 33707]
Length=89
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/69 (57%), Positives = 45/69 (66%), Gaps = 0/69 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
VDTAEVPSAAWGWS R + G FLL M+ GNH G VED FLI FA ++FVL
Sbjct 19 VDTAEVPSAAWGWSGEAPRLFRFAGWFFAAFLLLMMIGNHHGKVEDLFLIGFAGAIVFVL 78
Query 92 ARDLWGRRR 100
RD+ RR+
Sbjct 79 VRDIILRRK 87
>gi|120403246|ref|YP_953075.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
gi|119956064|gb|ABM13069.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=84
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/83 (54%), Positives = 54/83 (66%), Gaps = 4/83 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTEVE G VD +VPSA WGWS ++R + I GL GFLL M GNH GHVE
Sbjct 1 MASTEVERHTG----VDVEDVPSAEWGWSTENYRFYQIGGLLAAGFLLLMTHGNHTGHVE 56
Query 77 DWFLITFAAVVLFVLARDLWGRR 99
DWF+I FAAV++ + R + RR
Sbjct 57 DWFMIGFAAVLVGFVVRSFYVRR 79
>gi|289763054|ref|ZP_06522432.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis GM 1503]
gi|289710560|gb|EFD74576.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis GM 1503]
Length=33
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/33 (100%), Positives = 33/33 (100%), Gaps = 0/33 (0%)
Query 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVD 33
MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVD
Sbjct 1 MFGQWEFDVSPTGGIAVASTEVEHFAGSQHEVD 33
>gi|226366030|ref|YP_002783813.1| hypothetical protein ROP_66210 [Rhodococcus opacus B4]
gi|226244520|dbj|BAH54868.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=102
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/91 (46%), Positives = 55/91 (61%), Gaps = 3/91 (3%)
Query 13 GGIAVASTEVEHFAGSQ---HEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRG 69
GG VA T++E + +DTAEVPSAAWGWS +T+ G FLL M+ G
Sbjct 10 GGSIVAGTQLEPSSSDPIVAAHIDTAEVPSAAWGWSGEAPKTFRFFGWFFAVFLLLMIIG 69
Query 70 NHVGHVEDWFLITFAAVVLFVLARDLWGRRR 100
NH G VED +LI AA+++ +L RD+ RR+
Sbjct 70 NHTGLVEDLWLIGCAALMVLILVRDIVLRRK 100
>gi|111023546|ref|YP_706518.1| hypothetical protein RHA1_ro06587 [Rhodococcus jostii RHA1]
gi|110823076|gb|ABG98360.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=122
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/91 (47%), Positives = 55/91 (61%), Gaps = 3/91 (3%)
Query 13 GGIAVASTEVEHFAGSQ---HEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRG 69
GG VA T++E + VDTAEVPSAAWGWS +T+ G FLL M+ G
Sbjct 30 GGSIVAGTQLEPSSSDPIVAAHVDTAEVPSAAWGWSGEAPKTFRFFGWFFAVFLLLMIIG 89
Query 70 NHVGHVEDWFLITFAAVVLFVLARDLWGRRR 100
NH G VED +LI AA+++ +L RD+ RR+
Sbjct 90 NHTGLVEDLWLIGCAALMVAILVRDIVLRRK 120
>gi|145224668|ref|YP_001135346.1| hypothetical protein Mflv_4088 [Mycobacterium gilvum PYR-GCK]
gi|315444998|ref|YP_004077877.1| hypothetical protein Mspyr1_34310 [Mycobacterium sp. Spyr1]
gi|145217154|gb|ABP46558.1| putative conserved transmembrane protein [Mycobacterium gilvum
PYR-GCK]
gi|315263301|gb|ADU00043.1| hypothetical protein Mspyr1_34310 [Mycobacterium sp. Spyr1]
Length=84
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/84 (46%), Positives = 48/84 (58%), Gaps = 4/84 (4%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+ASTEVE G VD EVPSA WGWS R + I G + F L + GNH GHVE
Sbjct 1 MASTEVERHTG----VDVEEVPSAQWGWSSGSVRGYQIGGTIVGIFFLLLTIGNHQGHVE 56
Query 77 DWFLITFAAVVLFVLARDLWGRRR 100
D F+I FA + ++AR ++ R
Sbjct 57 DLFMIGFALLTFGLVARSVYTTRN 80
>gi|343926734|ref|ZP_08766231.1| hypothetical protein GOALK_068_00150 [Gordonia alkanivorans NBRC
16433]
gi|343763333|dbj|GAA13157.1| hypothetical protein GOALK_068_00150 [Gordonia alkanivorans NBRC
16433]
Length=93
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/92 (42%), Positives = 51/92 (56%), Gaps = 6/92 (6%)
Query 17 VASTEVEHFAGSQHEVDT------AEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGN 70
+AST+VEH G +DT A+ PSA +GW +T++ + FLL M+ GN
Sbjct 1 MASTDVEHTGGHADVIDTGWRREPADAPSARFGWFGSATKTFYGAAIFFAAFLLLMMIGN 60
Query 71 HVGHVEDWFLITFAAVVLFVLARDLWGRRRGW 102
H GHVED +LI FA VL+ + R W R W
Sbjct 61 HTGHVEDLWLIAFAVGVLYFVVRGWWMNRGKW 92
>gi|54026092|ref|YP_120334.1| hypothetical protein nfa41210 [Nocardia farcinica IFM 10152]
gi|54017600|dbj|BAD58970.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=89
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (47%), Positives = 44/69 (64%), Gaps = 0/69 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
VDTAEVPSA WGWS RT+ G+ + LLAM+ GNH G++E+ FL+ FA + ++
Sbjct 19 VDTAEVPSAEWGWSGEAPRTFKAAGIIVALILLAMIIGNHHGNIENIFLVGFALAIFAII 78
Query 92 ARDLWGRRR 100
D RR+
Sbjct 79 GYDWIYRRK 87
>gi|229491424|ref|ZP_04385248.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229321709|gb|EEN87506.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=89
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/69 (51%), Positives = 45/69 (66%), Gaps = 0/69 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
VD AEVPSAAWGWS + + +G FLL M+ GNH G VED +LI A +++F+L
Sbjct 19 VDEAEVPSAAWGWSGEGLKFFRFLGWFFAIFLLLMMIGNHHGKVEDLWLIGTAGLMIFIL 78
Query 92 ARDLWGRRR 100
RD+ RRR
Sbjct 79 VRDIVIRRR 87
>gi|226306038|ref|YP_002765998.1| hypothetical protein RER_25510 [Rhodococcus erythropolis PR4]
gi|226185155|dbj|BAH33259.1| hypothetical protein RER_25510 [Rhodococcus erythropolis PR4]
Length=75
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/69 (53%), Positives = 45/69 (66%), Gaps = 0/69 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
VD AEVPSAAWGWS + + +G FLL M+ GNH G VED +LI A +++FVL
Sbjct 5 VDEAEVPSAAWGWSGEGLKFFRFLGWFFAIFLLLMMIGNHHGKVEDLWLIGTAGLMIFVL 64
Query 92 ARDLWGRRR 100
RD+ RRR
Sbjct 65 VRDIVIRRR 73
>gi|262202049|ref|YP_003273257.1| hypothetical protein Gbro_2115 [Gordonia bronchialis DSM 43247]
gi|262085396|gb|ACY21364.1| hypothetical protein Gbro_2115 [Gordonia bronchialis DSM 43247]
Length=89
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/92 (41%), Positives = 53/92 (58%), Gaps = 10/92 (10%)
Query 17 VASTEVEHFAGSQHEVDT------AEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGN 70
+ASTEVEH VDT A+ PSA +GW + +T +I + L+AM+ GN
Sbjct 1 MASTEVEH----HDTVDTGWVREPADAPSARFGWHGVGMKTSYIAAVFCALALVAMIIGN 56
Query 71 HVGHVEDWFLITFAAVVLFVLARDLWGRRRGW 102
H GH+ED +LI FAAV+++ + R + R W
Sbjct 57 HHGHIEDIYLIGFAAVLIYFVVRGVVMNRNKW 88
>gi|317506003|ref|ZP_07963833.1| hypothetical protein HMPREF9336_00202 [Segniliparus rugosus ATCC
BAA-974]
gi|316255661|gb|EFV14901.1| hypothetical protein HMPREF9336_00202 [Segniliparus rugosus ATCC
BAA-974]
Length=103
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/74 (44%), Positives = 39/74 (53%), Gaps = 0/74 (0%)
Query 31 EVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFV 90
+VD AE PS WGW + + L LL ML GNH GHVED +LI FAA+
Sbjct 30 KVDLAEEPSGQWGWHGEYPNAYRWIALATIASLLVMLIGNHKGHVEDVWLIAFAAITALW 89
Query 91 LARDLWGRRRGWIR 104
L D+ +R W R
Sbjct 90 LVVDIVSKRGRWKR 103
>gi|172040510|ref|YP_001800224.1| hypothetical protein cur_0830 [Corynebacterium urealyticum DSM
7109]
gi|171851814|emb|CAQ04790.1| hypothetical protein cu0830 [Corynebacterium urealyticum DSM
7109]
Length=128
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/68 (48%), Positives = 42/68 (62%), Gaps = 4/68 (5%)
Query 21 EVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFL 80
+VE F G + T +VPSA WGWS + R + GL GFL+ ML GNH G+VE+ +L
Sbjct 7 KVEVFNG----ISTEDVPSAGWGWSALSKRAVVLSGLISVGFLVFMLVGNHEGNVENIWL 62
Query 81 ITFAAVVL 88
I AA +L
Sbjct 63 IALAAFIL 70
>gi|68536245|ref|YP_250950.1| hypothetical protein jk1168 [Corynebacterium jeikeium K411]
gi|260578945|ref|ZP_05846848.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|68263844|emb|CAI37332.1| hypothetical protein jk1168 [Corynebacterium jeikeium K411]
gi|258602919|gb|EEW16193.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=133
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/71 (48%), Positives = 41/71 (58%), Gaps = 4/71 (5%)
Query 19 STEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDW 78
S E E + G V TA+VPSAAWGWS + R G+ FLL ML GNH G+VE+
Sbjct 5 SKEAEVYNG----VSTADVPSAAWGWSELPRRGIITAGVIGGLFLLGMLFGNHKGNVENI 60
Query 79 FLITFAAVVLF 89
+LI A VV
Sbjct 61 WLIVLAVVVFL 71
>gi|296139394|ref|YP_003646637.1| hypothetical protein Tpau_1679 [Tsukamurella paurometabola DSM
20162]
gi|296027528|gb|ADG78298.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
20162]
Length=86
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/86 (38%), Positives = 44/86 (52%), Gaps = 2/86 (2%)
Query 17 VASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
+A+T++E S VD A+VPS WGWS I G+ LL M GNH G E
Sbjct 1 MATTDLER--QSTSTVDEADVPSKDWGWSGTAPNAARIAGVLFALLLLGMTIGNHTGKTE 58
Query 77 DWFLITFAAVVLFVLARDLWGRRRGW 102
D +L+ FA +L +A + + R W
Sbjct 59 DIWLVGFAVAILGAIAVNWYTSRGKW 84
>gi|334564571|ref|ZP_08517562.1| hypothetical protein CbovD2_08347 [Corynebacterium bovis DSM
20582]
Length=143
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/72 (46%), Positives = 40/72 (56%), Gaps = 5/72 (6%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVV---- 87
V TA+ PSAAWGW + R G+ FLL ML GNH GHVED +L+ A +V
Sbjct 5 VSTADEPSAAWGWHGLGRRGIATAGVISGLFLLGMLIGNHKGHVEDIWLVALAVLVFLGT 64
Query 88 -LFVLARDLWGR 98
LFV+ L R
Sbjct 65 FLFVVRPKLTQR 76
>gi|337291021|ref|YP_004630042.1| hypothetical protein CULC22_01413 [Corynebacterium ulcerans BR-AD22]
gi|334697134|gb|AEG81931.1| hypothetical protein CULC809_01399 [Corynebacterium ulcerans
809]
gi|334699327|gb|AEG84123.1| hypothetical protein CULC22_01413 [Corynebacterium ulcerans BR-AD22]
Length=141
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/58 (52%), Positives = 32/58 (56%), Gaps = 0/58 (0%)
Query 30 HEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVV 87
H V T + PSAAWGW I R I G FLL GNH GHVE FL TFA V+
Sbjct 13 HGVSTLDEPSAAWGWHSIGMRAIQISGWISVIFLLGYNFGNHQGHVETIFLFTFAIVI 70
>gi|326382906|ref|ZP_08204596.1| hypothetical protein SCNU_08203 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198496|gb|EGD55680.1| hypothetical protein SCNU_08203 [Gordonia neofelifaecis NRRL
B-59395]
Length=87
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query 17 VASTEVEHFAGSQHEVDT------AEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGN 70
+ASTEVE +DT A+ PSA +GW + ++ +L ML+GN
Sbjct 1 MASTEVE-------TIDTGWVREPADAPSARFGWHGVARKSIAAAAFVTAIIMLGMLKGN 53
Query 71 HVGHVEDWFLITFAAVVLFVLARDLWGRRRGWIR 104
HVGH+ED FLI A ++ ++ R+ W R
Sbjct 54 HVGHIEDVFLIIIAVALIGYTVYEMIPRKGTWKR 87
>gi|336325811|ref|YP_004605777.1| hypothetical protein CRES_1258 [Corynebacterium resistens DSM
45100]
gi|336101793|gb|AEI09613.1| putative membrane protein [Corynebacterium resistens DSM 45100]
Length=167
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/46 (57%), Positives = 31/46 (68%), Gaps = 0/46 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVED 77
V T +VPSAAWGWS + R+ + G+ FLL ML GNH GHVED
Sbjct 45 VSTKDVPSAAWGWSELSKRSVVLSGVIGGLFLLGMLFGNHKGHVED 90
>gi|237785745|ref|YP_002906450.1| hypothetical protein ckrop_1162 [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758657|gb|ACR17907.1| hypothetical protein ckrop_1162 [Corynebacterium kroppenstedtii
DSM 44385]
Length=138
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/55 (53%), Positives = 33/55 (60%), Gaps = 0/55 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAV 86
V T + PSA WGW + R I G+ FLL ML GNH GHVED FLI AA+
Sbjct 12 VSTKDEPSAYWGWHDLGRRPVIISGIVGGLFLLFMLIGNHKGHVEDIFLIATAAL 66
>gi|300858723|ref|YP_003783706.1| hypothetical protein cpfrc_01306 [Corynebacterium pseudotuberculosis
FRC41]
gi|300686177|gb|ADK29099.1| hypothetical protein cpfrc_01306 [Corynebacterium pseudotuberculosis
FRC41]
gi|302206432|gb|ADL10774.1| Hypothetical protein CpC231_1301 [Corynebacterium pseudotuberculosis
C231]
gi|302330988|gb|ADL21182.1| Hypothetical protein Cp1002_1302 [Corynebacterium pseudotuberculosis
1002]
gi|308276674|gb|ADO26573.1| Putative conserved membrane protein [Corynebacterium pseudotuberculosis
I19]
gi|341825116|gb|AEK92637.1| Hypothetical protein CpPAT10_1300 [Corynebacterium pseudotuberculosis
PAT10]
Length=141
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 32/58 (56%), Gaps = 0/58 (0%)
Query 30 HEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVV 87
H V T + PSAAWGW I R I G FLL GNH GHVE FL TFA ++
Sbjct 13 HGVSTLDEPSAAWGWHSIGMRAVQISGWISVLFLLGYNFGNHKGHVETIFLFTFAILI 70
>gi|38234080|ref|NP_939847.1| hypothetical protein DIP1501 [Corynebacterium diphtheriae NCTC
13129]
gi|38200342|emb|CAE50028.1| Putative membrane protein [Corynebacterium diphtheriae]
Length=172
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/73 (43%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
V T + PSAAWGW I R + G FLLA GNH GHVE FL FAAV+ L
Sbjct 46 VSTLDEPSAAWGWHSIGTRAIQLSGWGSVVFLLAYNFGNHKGHVETIFLFVFAAVIALGL 105
Query 92 ARDLWGRRRGWIR 104
+ + +R
Sbjct 106 ILQIVKPQGKQVR 118
>gi|340794658|ref|YP_004760121.1| hypothetical protein CVAR_1696 [Corynebacterium variabile DSM
44702]
gi|340534568|gb|AEK37048.1| hypothetical protein CVAR_1696 [Corynebacterium variabile DSM
44702]
Length=153
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/74 (41%), Positives = 41/74 (56%), Gaps = 12/74 (16%)
Query 20 TEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIV----GLCIFGFLLAMLRGNHVGHV 75
T+VE + G V T + PSAAWGW + +T IV G+C+FGFL GNH G V
Sbjct 6 TKVEVYKG----VSTVDEPSAAWGWHQFPRKTTIIVGYVAGICMFGFLF----GNHHGKV 57
Query 76 EDWFLITFAAVVLF 89
ED +++ +L
Sbjct 58 EDIYIVVIGLAILL 71
>gi|305680862|ref|ZP_07403669.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
gi|305659067|gb|EFM48567.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
14266]
Length=141
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/83 (40%), Positives = 38/83 (46%), Gaps = 8/83 (9%)
Query 25 FAGSQHE--------VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVE 76
AGS HE V T + PSAAWGW I I G LL GNH GHVE
Sbjct 1 MAGSHHEIAPEVHNGVSTLDEPSAAWGWHHIGQNAVQIAGWISVFVLLGYNFGNHKGHVE 60
Query 77 DWFLITFAAVVLFVLARDLWGRR 99
FL FAA++ L L+ +
Sbjct 61 TIFLFVFAALIAVGLLIQLFEPK 83
>gi|300780940|ref|ZP_07090794.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300532647|gb|EFK53708.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length=214
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (40%), Positives = 39/73 (54%), Gaps = 5/73 (6%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFA-----AV 86
V A+VPSA +GWS + T I G FL+A GNH GHVE +LI+ A +
Sbjct 52 VSEADVPSAKFGWSELKPATIQIAGWISVAFLIAYNFGNHQGHVETIWLISLAVLIALGL 111
Query 87 VLFVLARDLWGRR 99
+LF + +L R
Sbjct 112 ILFAIRPELSTAR 124
>gi|213964512|ref|ZP_03392712.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213952705|gb|EEB64087.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length=133
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
V T + PSA WGW + G FLL M GNH G+VE+++L+ AA++ L
Sbjct 14 VSTLDEPSAKWGWHGMSKSAMQKAGWISVIFLLGMTIGNHKGNVENYWLVAIAALIAIGL 73
Query 92 ARDLWGRRRGWIR 104
L+ R +R
Sbjct 74 LLQLFAPRGSQVR 86
>gi|227488625|ref|ZP_03918941.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227543229|ref|ZP_03973278.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091519|gb|EEI26831.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227181038|gb|EEI62010.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=181
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/74 (41%), Positives = 39/74 (53%), Gaps = 5/74 (6%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAV----- 86
V+T + PSA WGW RI + I G LLA GNH GHVE +L+T A V
Sbjct 41 VNTLDEPSAKWGWHRIGNGVIQICGWIGVVLLLAFNFGNHRGHVETIWLVTLAVVIALGL 100
Query 87 VLFVLARDLWGRRR 100
++F + DL R+
Sbjct 101 IVFAIKPDLNQVRK 114
>gi|255325231|ref|ZP_05366337.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255297796|gb|EET77107.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length=153
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/56 (49%), Positives = 32/56 (58%), Gaps = 0/56 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVV 87
V T +VPSA +GWSRI I G FLLA GNH GHVE +LI A ++
Sbjct 14 VSTEDVPSAGFGWSRISRSGVQIAGWISVLFLLAYNFGNHKGHVETIWLIALAILI 69
>gi|311739705|ref|ZP_07713540.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305521|gb|EFQ81589.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length=168
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/56 (49%), Positives = 32/56 (58%), Gaps = 0/56 (0%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVV 87
V T +VPSA +GWSRI I G FLLA GNH GHVE +LI A ++
Sbjct 29 VSTEDVPSAGFGWSRISRSGVQIAGWISVLFLLAYNFGNHKGHVETIWLIALAILI 84
>gi|259507522|ref|ZP_05750422.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259164907|gb|EEW49461.1| membrane protein [Corynebacterium efficiens YS-314]
Length=148
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 42/87 (49%), Gaps = 8/87 (9%)
Query 26 AGSQHEVD--------TAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVED 77
AGS H+++ T + PSAAWGW I I G FLL GNH GHVE
Sbjct 7 AGSSHKIEPEIYNGVSTLDEPSAAWGWHDIGRNAIQISGWISVLFLLGFNFGNHKGHVET 66
Query 78 WFLITFAAVVLFVLARDLWGRRRGWIR 104
+L+ AA++ L L+ + +R
Sbjct 67 IWLLVLAALIAIGLLIHLFEPKLSQVR 93
>gi|227504806|ref|ZP_03934855.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
gi|227198656|gb|EEI78704.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
Length=164
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/69 (45%), Positives = 36/69 (53%), Gaps = 5/69 (7%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAV----- 86
V T +VPSA +GWSRI I G FL+A GNH GHVE +L A V
Sbjct 32 VSTEDVPSAGFGWSRISRSGVQIAGWISVIFLVAYNFGNHKGHVETVWLAVLAIVIALGL 91
Query 87 VLFVLARDL 95
VLF L +L
Sbjct 92 VLFALRPNL 100
>gi|25028462|ref|NP_738516.1| hypothetical protein CE1906 [Corynebacterium efficiens YS-314]
gi|23493747|dbj|BAC18716.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=150
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/87 (36%), Positives = 42/87 (49%), Gaps = 8/87 (9%)
Query 26 AGSQHEVD--------TAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVED 77
AGS H+++ T + PSAAWGW I I G FLL GNH GHVE
Sbjct 9 AGSSHKIEPEIYNGVSTLDEPSAAWGWHDIGRNAIQISGWISVLFLLGFNFGNHKGHVET 68
Query 78 WFLITFAAVVLFVLARDLWGRRRGWIR 104
+L+ AA++ L L+ + +R
Sbjct 69 IWLLVLAALIAIGLLIHLFEPKLSQVR 95
>gi|296394686|ref|YP_003659570.1| hypothetical protein Srot_2289 [Segniliparus rotundus DSM 44985]
gi|296181833|gb|ADG98739.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
Length=103
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/74 (41%), Positives = 37/74 (50%), Gaps = 0/74 (0%)
Query 31 EVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFV 90
+VD A PS WGW T+ V L LL M GNH GHVED +L AA++
Sbjct 30 KVDLAVEPSGRWGWHGEYPTTYRWVALAAIFSLLIMNVGNHQGHVEDVWLDVVAAIIAIW 89
Query 91 LARDLWGRRRGWIR 104
L D+ +R W R
Sbjct 90 LVIDVVSKRGRWKR 103
>gi|227833377|ref|YP_002835084.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
gi|262184363|ref|ZP_06043784.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
gi|227454393|gb|ACP33146.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975]
Length=149
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/60 (49%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVGHVEDWFLITFAAVVLFVL 91
V T +VPSA +GWSRI I G FLLA GNH GHVE +L FA +L L
Sbjct 14 VSTDDVPSAGFGWSRISRSGVQIAGWTSVVFLLAYNFGNHKGHVETIWL--FALAILIAL 71
>gi|302525238|ref|ZP_07277580.1| predicted protein [Streptomyces sp. AA4]
gi|302434133|gb|EFL05949.1| predicted protein [Streptomyces sp. AA4]
Length=97
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (51%), Gaps = 4/75 (5%)
Query 14 GIAVASTEVEHFAGSQHEVDTAEVPSAAWGWSRIDHRTWHIVGLCIFGFLLAMLRGNHVG 73
G+ VA VE + EVD + PSA WGW + I G LL ML+GNH
Sbjct 11 GVVVAGKAVE----KRPEVDPRDEPSAEWGWHGSFPKATRIAGWVSAAILLVMLKGNHEN 66
Query 74 HVEDWFLITFAAVVL 88
+ E+ +L+ AA ++
Sbjct 67 NTENVWLVGLAAFIV 81
>gi|319948051|ref|ZP_08022225.1| hypothetical protein ES5_01929 [Dietzia cinnamea P4]
gi|319438290|gb|EFV93236.1| hypothetical protein ES5_01929 [Dietzia cinnamea P4]
Length=124
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (44%), Positives = 37/58 (64%), Gaps = 8/58 (13%)
Query 32 VDTAEVPSAAWGWSRIDHRTWHIVGLCIFGF----LLAMLRGNHVGHVEDWFLITFAA 85
+ + + PS AWGW H+ +VG+ + GF LLAML GNH+G VE+ +L++ AA
Sbjct 17 ISSVDEPSVAWGW----HKHSRMVGVAVGGFFVLFLLAMLFGNHIGRVENIWLVSIAA 70
Lambda K H
0.329 0.141 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127350764394
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40