BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2877c Length=287 Score E Sequences producing significant alignments: (Bits) Value gi|15842419|ref|NP_337456.1| mercury resistance transport protei... 531 5e-149 gi|31794054|ref|NP_856547.1| integral membrane protein [Mycobact... 530 9e-149 gi|289751543|ref|ZP_06510921.1| LOW QUALITY PROTEIN: conserved m... 475 3e-132 gi|289758999|ref|ZP_06518377.1| integral membrane protein [Mycob... 414 1e-113 gi|240171732|ref|ZP_04750391.1| integral membrane protein [Mycob... 381 6e-104 gi|254819034|ref|ZP_05224035.1| putative integral membrane prote... 373 2e-101 gi|118617649|ref|YP_905981.1| integral membrane protein [Mycobac... 360 1e-97 gi|183981845|ref|YP_001850136.1| integral membrane protein [Myco... 353 2e-95 gi|342858276|ref|ZP_08714931.1| integral membrane protein [Mycob... 348 4e-94 gi|41409039|ref|NP_961875.1| hypothetical protein MAP2941c [Myco... 311 5e-83 gi|254776156|ref|ZP_05217672.1| 1-deoxy-D-xylulose 5-phosphate r... 309 3e-82 gi|118466671|ref|YP_882903.1| cytochrome C biogenesis protein tr... 304 9e-81 gi|118468248|ref|YP_887845.1| cytochrome C biogenesis protein tr... 301 8e-80 gi|169630325|ref|YP_001703974.1| mercuric transporter MerT [Myco... 249 4e-64 gi|5051812|emb|CAB45041.1| putative integral membrane transporte... 247 1e-63 gi|183985026|ref|YP_001853317.1| hypothetical protein MMAR_5058 ... 238 7e-61 gi|317508493|ref|ZP_07966160.1| cytochrome C biogenesis protein ... 217 1e-54 gi|333989290|ref|YP_004521904.1| hypothetical protein JDM601_065... 215 6e-54 gi|169631353|ref|YP_001705002.1| hypothetical protein MAB_4275c ... 212 5e-53 gi|240171058|ref|ZP_04749717.1| hypothetical protein MkanA1_1723... 212 5e-53 gi|119714252|ref|YP_919394.1| cytochrome c biogenesis protein, t... 210 2e-52 gi|145594085|ref|YP_001158382.1| cytochrome c biogenesis protein... 207 1e-51 gi|240169784|ref|ZP_04748443.1| hypothetical protein MkanA1_1075... 202 3e-50 gi|317506825|ref|ZP_07964599.1| cytochrome C biogenesis protein ... 201 9e-50 gi|331695157|ref|YP_004331396.1| cytochrome c biogenesis protein... 200 2e-49 gi|159037116|ref|YP_001536369.1| cytochrome c biogenesis protein... 194 1e-47 gi|296393689|ref|YP_003658573.1| cytochrome C biogenesis protein... 191 1e-46 gi|291299662|ref|YP_003510940.1| cytochrome c biogenesis protein... 184 2e-44 gi|296394288|ref|YP_003659172.1| cytochrome C biogenesis protein... 176 3e-42 gi|119716306|ref|YP_923271.1| cytochrome c biogenesis protein, t... 154 1e-35 gi|315504338|ref|YP_004083225.1| cytochrome c biogenesis protein... 146 4e-33 gi|302869185|ref|YP_003837822.1| cytochrome c biogenesis protein... 146 4e-33 gi|238060459|ref|ZP_04605168.1| cytochrome c biogenesis protein,... 119 6e-25 gi|330469509|ref|YP_004407252.1| cytochrome c biogenesis protein... 117 2e-24 gi|108804608|ref|YP_644545.1| cytochrome c biogenesis protein, t... 113 3e-23 gi|218290788|ref|ZP_03494865.1| cytochrome c biogenesis protein ... 109 4e-22 gi|227503929|ref|ZP_03933978.1| cytochrome c biogenesis protein ... 103 3e-20 gi|269839112|ref|YP_003323804.1| cytochrome C biogenesis protein... 103 3e-20 gi|269839391|ref|YP_003324083.1| cytochrome C biogenesis protein... 102 5e-20 gi|269836147|ref|YP_003318375.1| cytochrome c biogenesis protein... 98.6 1e-18 gi|219883286|ref|YP_002478447.1| cytochrome c biogenesis protein... 94.0 3e-17 gi|219883293|ref|YP_002478454.1| cytochrome c biogenesis protein... 93.2 4e-17 gi|309813297|ref|ZP_07707010.1| cytochrome C biogenesis protein ... 90.5 3e-16 gi|221633464|ref|YP_002522689.1| putative integral membrane tran... 89.7 5e-16 gi|51246951|ref|YP_066835.1| hypothetical protein DP3099 [Desulf... 87.0 3e-15 gi|27467001|ref|NP_763638.1| hypothetical protein SE0083 [Staphy... 85.5 9e-15 gi|304388038|gb|ADM29139.1| Transporter [Staphylococcus aureus] 85.5 9e-15 gi|14021020|dbj|BAB47644.1| orf4 [Staphylococcus aureus] 85.1 1e-14 gi|145223804|ref|YP_001134482.1| cytochrome c biogenesis protein... 84.0 2e-14 gi|253315940|ref|ZP_04839153.1| hypothetical protein SauraC_0728... 82.0 9e-14 >gi|15842419|ref|NP_337456.1| mercury resistance transport protein, putative [Mycobacterium tuberculosis CDC1551] gi|57117033|ref|YP_177912.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|148662721|ref|YP_001284244.1| putative mercury resistance transport protein [Mycobacterium tuberculosis H37Ra] 55 more sequence titles Length=287 Score = 531 bits (1367), Expect = 5e-149, Method: Compositional matrix adjust. Identities = 286/287 (99%), Positives = 287/287 (100%), Gaps = 0/287 (0%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 +NEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA Sbjct 1 MNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR Sbjct 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV Sbjct 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD Sbjct 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR Sbjct 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 >gi|31794054|ref|NP_856547.1| integral membrane protein [Mycobacterium bovis AF2122/97] gi|121638759|ref|YP_978983.1| putative integral membrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991251|ref|YP_002645940.1| putative integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172] 19 more sequence titles Length=287 Score = 530 bits (1365), Expect = 9e-149, Method: Compositional matrix adjust. Identities = 285/287 (99%), Positives = 287/287 (100%), Gaps = 0/287 (0%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 +NEALIGLAFAAGLVAALNPCGFAMLPAYLLLVV+GQDSAGRTGPLSAVGRAAAATVGMA Sbjct 1 MNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVHGQDSAGRTGPLSAVGRAAAATVGMA 60 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR Sbjct 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV Sbjct 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD Sbjct 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR Sbjct 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 >gi|289751543|ref|ZP_06510921.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium tuberculosis T92] gi|289692130|gb|EFD59559.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium tuberculosis T92] Length=286 Score = 475 bits (1223), Expect = 3e-132, Method: Compositional matrix adjust. Identities = 258/269 (96%), Positives = 260/269 (97%), Gaps = 0/269 (0%) Query 19 NPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISAA 78 P + LLLVV+GQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISAA Sbjct 18 EPMRVCHVAGLLLLVVHGQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISAA 77 Query 79 TAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLGSMYGYGISYA 138 TAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLGSMYGYGISYA Sbjct 78 TAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLGSMYGYGISYA 137 Query 139 VASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALADRL 198 VASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALADRL Sbjct 138 VASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALADRL 197 Query 199 RRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGALAGWVN 258 RRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGALAGWVN Sbjct 198 RRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGALAGWVN 257 Query 259 QHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 QHGAWPWAVLLVVLVVGAFAGTWFRRVRR Sbjct 258 QHGAWPWAVLLVVLVVGAFAGTWFRRVRR 286 >gi|289758999|ref|ZP_06518377.1| integral membrane protein [Mycobacterium tuberculosis T85] gi|289714563|gb|EFD78575.1| integral membrane protein [Mycobacterium tuberculosis T85] Length=288 Score = 414 bits (1063), Expect = 1e-113, Method: Compositional matrix adjust. Identities = 270/292 (93%), Positives = 273/292 (94%), Gaps = 9/292 (3%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 +NEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA Sbjct 1 MNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR Sbjct 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSV-----VGSVAIYLAYVAG 175 WAPTVRLGSMYGYGISYAV SCTIGPF G RG + GSVA +LAYVAG Sbjct 121 WAPTVRLGSMYGYGISYAVLRCSCTIGPF----SRGYRGRACGAVRSSGSVATHLAYVAG 176 Query 176 LTLVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVG 235 LTLVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVG Sbjct 177 LTLVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVG 236 Query 236 ANPQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 ANPQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR Sbjct 237 ANPQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 288 >gi|240171732|ref|ZP_04750391.1| integral membrane protein [Mycobacterium kansasii ATCC 12478] Length=288 Score = 381 bits (979), Expect = 6e-104, Method: Compositional matrix adjust. Identities = 217/287 (76%), Positives = 239/287 (84%), Gaps = 1/287 (0%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 +++ L+GLAFAAGLVAALNPCGFAMLPAYL LVV G A R G L A+ RA AATVGMA Sbjct 1 MDQGLVGLAFAAGLVAALNPCGFAMLPAYLFLVVRGLHPAERGG-LPALVRALAATVGMA 59 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGF TVFG+FGALTISAAT VQRYLPYATVLIG+ L+ALG WLL GR TALTPR G R Sbjct 60 LGFTTVFGLFGALTISAATTVQRYLPYATVLIGIFLVALGVWLLGGRESTALTPRRFGPR 119 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 WAPT RLGS YGYG+SYA ASLSCTIGPFLAVTGAG RGGS+VGS+AIYLAYVAGLTLVV Sbjct 120 WAPTARLGSTYGYGVSYATASLSCTIGPFLAVTGAGFRGGSIVGSIAIYLAYVAGLTLVV 179 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLAV A ASSALA+R+RRILP VNRISGALLV+ GLYV YYGL ELRL +G G NP+D Sbjct 180 GVLAVGVAAASSALAERIRRILPLVNRISGALLVLTGLYVSYYGLSELRLFSGAGVNPRD 239 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 VI AAGR+QG LAGWV++HGAWPW L +L +G AG W+RR RR Sbjct 240 GVITAAGRVQGVLAGWVHEHGAWPWVAALAMLTLGGLAGAWYRRARR 286 >gi|254819034|ref|ZP_05224035.1| putative integral membrane protein [Mycobacterium intracellulare ATCC 13950] Length=293 Score = 373 bits (957), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 217/287 (76%), Positives = 241/287 (84%), Gaps = 2/287 (0%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 +++ L+GLAFAAGLVAALNPCGFAMLPAYLLLVV G+ R+G ++A GRA AATVGMA Sbjct 1 MDQGLVGLAFAAGLVAALNPCGFAMLPAYLLLVVRGRRPGERSG-VAATGRALAATVGMA 59 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFG+FGALT+SAAT VQRYLPYAT L+G+ LI LG WLL GR L+AL R LG R Sbjct 60 LGFLTVFGVFGALTVSAATTVQRYLPYATALVGVVLIVLGAWLLSGRELSALASRPLGPR 119 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVT AGLRGGS+V VAIYL+Y AGLTLVV Sbjct 120 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTAAGLRGGSIVTGVAIYLSYSAGLTLVV 179 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLAVAAATAS+A+ DRLRRILPFVNRI GALLV+VGLYV YYG YE+RL G ANP+D Sbjct 180 GVLAVAAATASTAMVDRLRRILPFVNRIGGALLVLVGLYVAYYGSYEVRLF-GANANPRD 238 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 AVI A GRLQGA AGWV+QHG WPW V ++ L V G W RRV+R Sbjct 239 AVITAVGRLQGATAGWVHQHGIWPWLVAMLALAVVVIGGAWHRRVKR 285 >gi|118617649|ref|YP_905981.1| integral membrane protein [Mycobacterium ulcerans Agy99] gi|118569759|gb|ABL04510.1| conserved integral membrane protein [Mycobacterium ulcerans Agy99] Length=290 Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 216/290 (75%), Positives = 243/290 (84%), Gaps = 3/290 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQ---DSAGRTGPLSAVGRAAAATV 57 +N AL+ LAFAAG VAALNPCGFAMLPAYLLLVV GQ +S P+ AVGRA AAT+ Sbjct 1 MNSALVALAFAAGSVAALNPCGFAMLPAYLLLVVRGQHGGESGEAASPIGAVGRAIAATI 60 Query 58 GMALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSL 117 GMALGFLTVFG FGALTISAA+ VQRYLPY TV IG+ L LG WLL GR L ALTP Sbjct 61 GMALGFLTVFGAFGALTISAASTVQRYLPYLTVSIGVLLFGLGVWLLSGRELAALTPSGF 120 Query 118 GVRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLT 177 G RWAPT RLGSMYGYG+SYAVASLSCTIGPF+AVTGAGLRGGS++G+VAIYLAY+AGLT Sbjct 121 GPRWAPTARLGSMYGYGVSYAVASLSCTIGPFIAVTGAGLRGGSILGAVAIYLAYIAGLT 180 Query 178 LVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGAN 237 +VVG LA+AAATASSALADRLRR+LP VNRISG LL VVGLYVGYYG YE+RL +G+ + Sbjct 181 MVVGALAIAAATASSALADRLRRVLPLVNRISGGLLAVVGLYVGYYGYYEVRLTSGLLVD 240 Query 238 PQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 PQD VI AAGR+QG LAGWV+QHG WPW V+L +LV GAF+ +W+RR RR Sbjct 241 PQDRVIGAAGRIQGELAGWVHQHGIWPWVVVLTLLVAGAFSVSWYRRARR 290 >gi|183981845|ref|YP_001850136.1| integral membrane protein [Mycobacterium marinum M] gi|183175171|gb|ACC40281.1| conserved integral membrane protein [Mycobacterium marinum M] Length=290 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 220/290 (76%), Positives = 246/290 (85%), Gaps = 3/290 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQD--SAGRTG-PLSAVGRAAAATV 57 +N AL+ LAFAAG VAALNPCGFAMLPAYLLLVV GQ +G G P+ AVGRA AAT+ Sbjct 1 MNSALVALAFAAGSVAALNPCGFAMLPAYLLLVVRGQHGGESGEVGSPIGAVGRAIAATI 60 Query 58 GMALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSL 117 GMALGFLTVFG FGALTISAA+ VQRYLPY TVLIG+ L LG WLL GR L ALTP Sbjct 61 GMALGFLTVFGAFGALTISAASTVQRYLPYLTVLIGVLLFGLGVWLLSGRELAALTPSGF 120 Query 118 GVRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLT 177 G RWAPT RLGSMYGYG+SYAVASLSCTIGPF+AVTGAGLRGGS++G+VAIYLAY+AGLT Sbjct 121 GPRWAPTARLGSMYGYGVSYAVASLSCTIGPFIAVTGAGLRGGSILGAVAIYLAYIAGLT 180 Query 178 LVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGAN 237 +VVG LA+AAATASSALADRLRR+LP VNRISG LLVVVGLYVGYYG YE+RL +G+ + Sbjct 181 MVVGALAIAAATASSALADRLRRVLPLVNRISGGLLVVVGLYVGYYGYYEVRLTSGLLVD 240 Query 238 PQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 PQD VI AAGR+QG LAGWV+QHG WPWAV L +LV GAF+ +W+RR RR Sbjct 241 PQDRVIGAAGRIQGELAGWVHQHGIWPWAVALTLLVAGAFSVSWYRRARR 290 >gi|342858276|ref|ZP_08714931.1| integral membrane protein [Mycobacterium colombiense CECT 3035] gi|342133980|gb|EGT87160.1| integral membrane protein [Mycobacterium colombiense CECT 3035] Length=286 Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 211/286 (74%), Positives = 236/286 (83%), Gaps = 2/286 (0%) Query 2 NEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMAL 61 ++ L+GLA AAGLVAALNPCGFAMLPAYLLLVV GQ + +G ++A RA AATVGMAL Sbjct 3 DQGLVGLASAAGLVAALNPCGFAMLPAYLLLVVRGQRAGASSG-VTAASRALAATVGMAL 61 Query 62 GFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRW 121 GFLTVFG+FGALT+SAAT VQRYLPYATV++G+ LI LG WLL GR L+ALTPR L RW Sbjct 62 GFLTVFGVFGALTVSAATTVQRYLPYATVVVGVVLIGLGAWLLSGRALSALTPRPLAPRW 121 Query 122 APTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVG 181 APT RLGSMYGYGISYA+ASLSCT+GPFLAVT AGLRGGS+ VAIYLAY AGLTLVVG Sbjct 122 APTARLGSMYGYGISYAIASLSCTVGPFLAVTAAGLRGGSIATGVAIYLAYSAGLTLVVG 181 Query 182 VLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDA 241 VLAVAAATASSA+ DRLRR LPFVNRI GALLV+VGLYV YYG YE+RL G NP+DA Sbjct 182 VLAVAAATASSAMVDRLRRALPFVNRIGGALLVLVGLYVAYYGSYEVRLF-GPNGNPRDA 240 Query 242 VIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 VI+ AGRLQGA+AGWV+QHG WPW + +V L V G W RR R Sbjct 241 VISGAGRLQGAVAGWVHQHGVWPWVIAMVALAVVVIGGAWRRRAHR 286 >gi|41409039|ref|NP_961875.1| hypothetical protein MAP2941c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397398|gb|AAS05258.1| hypothetical protein MAP_2941c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459072|gb|EGO38022.1| cytochrome c biogenesis protein [Mycobacterium avium subsp. paratuberculosis S397] Length=409 Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 199/287 (70%), Positives = 229/287 (80%), Gaps = 5/287 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVG-M 59 ++ L+GLA AAG+VAALNPCGFAMLPAYLLLVV G AG P A A A M Sbjct 1 MDRGLVGLAVAAGMVAALNPCGFAMLPAYLLLVVRG---AGTRAPGVAAAGRALAATAGM 57 Query 60 ALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGV 119 ALGFLTVFG+FGALT+SAA AVQR+LPYATV++G+ L+ALGGWLL GR L+ALTPR +G Sbjct 58 ALGFLTVFGLFGALTVSAAGAVQRWLPYATVVVGVLLVALGGWLLAGRSLSALTPRPVGP 117 Query 120 RWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLV 179 RWAPT RLGSMYGYGISYA+ASLSCT+GPFLAVT AGLR GS++ A+YL YVAGLTLV Sbjct 118 RWAPTARLGSMYGYGISYAIASLSCTVGPFLAVTAAGLRSGSLLTGAAVYLGYVAGLTLV 177 Query 180 VGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQ 239 VGV AVAAATA +A ADRLRR+LPFV+RISGA+LV+VGLYV YYG YE+RL G G +P+ Sbjct 178 VGVPAVAAATAGAATADRLRRMLPFVDRISGAVLVLVGLYVAYYGGYEVRLF-GAGGDPR 236 Query 240 DAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVR 286 DAVI AAGRLQGAL GWV++HG WPWA+ L+ L F W R R Sbjct 237 DAVIGAAGRLQGALVGWVHRHGLWPWALALLALAAVPFGHAWRRGQR 283 >gi|254776156|ref|ZP_05217672.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Mycobacterium avium subsp. avium ATCC 25291] Length=818 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 195/265 (74%), Positives = 227/265 (86%), Gaps = 3/265 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 ++ L+GLA AAG+VAALNPCGFAMLPAYLLLVV G + R ++A GRA AA+ GMA Sbjct 1 MDRGLVGLAVAAGMVAALNPCGFAMLPAYLLLVVRG--AGARAPGVAAAGRALAASAGMA 58 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFG+FGALT+SAA AVQR+LPYATV++G+ L+ALGGWLL GR L+ALTPR +G Sbjct 59 LGFLTVFGLFGALTVSAAGAVQRWLPYATVVVGVLLVALGGWLLAGRSLSALTPRPVGPL 118 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 WAPT RLGSMYGYGISYA+ASLSCT+GPFLAVT AGLR GS++ A+YL YVAGLTLVV Sbjct 119 WAPTARLGSMYGYGISYAIASLSCTVGPFLAVTAAGLRSGSLLTGAAVYLGYVAGLTLVV 178 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLAVAAATA +A ADRLRR+LPFV+RISGA+LV+VGLYV YYG YE+RL G G +P+D Sbjct 179 GVLAVAAATAGAATADRLRRMLPFVDRISGAVLVLVGLYVAYYGGYEVRLF-GAGGDPRD 237 Query 241 AVIAAAGRLQGALAGWVNQHGAWPW 265 AVI AAGRLQGALAGWV++HG WPW Sbjct 238 AVIGAAGRLQGALAGWVHRHGLWPW 262 >gi|118466671|ref|YP_882903.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium avium 104] gi|118167958|gb|ABK68855.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium avium 104] Length=409 Score = 304 bits (779), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 194/265 (74%), Positives = 227/265 (86%), Gaps = 3/265 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 ++ L+GLA AAG+VAALNPCGFAMLPAYLLLVV G + R ++A GRA AA+ GMA Sbjct 1 MDRGLVGLAVAAGMVAALNPCGFAMLPAYLLLVVRG--AGARAPGVAAAGRALAASAGMA 58 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFG+FGALT+SAA AVQR+LPYATV++G+ L+ALGGWLL GR L+ALTPR +G Sbjct 59 LGFLTVFGLFGALTVSAAGAVQRWLPYATVVVGVLLVALGGWLLAGRSLSALTPRPVGPL 118 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 WAPT RLGSMYGYGISYA+ASLSCT+GPFLAVT AGLR GS++ A+YL YVAGLTLVV Sbjct 119 WAPTARLGSMYGYGISYAIASLSCTVGPFLAVTAAGLRSGSLLTGAAVYLGYVAGLTLVV 178 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLAVAAATA +A ADRLRR++PFV+RISGA+LV+VGLYV YYG YE+RL G G +P+D Sbjct 179 GVLAVAAATAGAATADRLRRMVPFVDRISGAVLVLVGLYVAYYGGYEVRLF-GAGGDPRD 237 Query 241 AVIAAAGRLQGALAGWVNQHGAWPW 265 AVI AAGRLQGALAGWV++HG WPW Sbjct 238 AVIGAAGRLQGALAGWVHRHGLWPW 262 >gi|118468248|ref|YP_887845.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium smegmatis str. MC2 155] gi|118169535|gb|ABK70431.1| cytochrome C biogenesis protein transmembrane region [Mycobacterium smegmatis str. MC2 155] Length=297 Score = 301 bits (771), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 174/268 (65%), Positives = 208/268 (78%), Gaps = 6/268 (2%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 + + L+GLAF AGLVAALNPCGFA+LP YL LVV G+++A A+GRAA ATV MA Sbjct 1 MEQDLLGLAFGAGLVAALNPCGFALLPGYLALVVRGENAATGA---RALGRAALATVAMA 57 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSL--G 118 GF+ VFG F ALT++ A+ VQRYLPY TV+IGL L+ LG WLL GR L L P SL Sbjct 58 AGFVAVFGTFTALTVATASTVQRYLPYVTVVIGLILVCLGIWLLAGRRLGVLMPNSLADN 117 Query 119 VRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTL 178 RWAPT R+GSM GYG+ YA+ASLSCTIGPFLAVTGAGLR G+ + V ++ +Y AG TL Sbjct 118 PRWAPTARMGSMLGYGVGYALASLSCTIGPFLAVTGAGLRSGTPLRGVGVFASYAAGFTL 177 Query 179 VVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANP 238 VVGVLAVA A A + + DR+RRILP+ NRISGALL++VG YVGYYGLYE+RL +G G +P Sbjct 178 VVGVLAVATALARTVVIDRMRRILPYANRISGALLILVGAYVGYYGLYEVRLFSGSG-DP 236 Query 239 QDAVIAAAGRLQGALAGWVNQHGAWPWA 266 D VIAAAG++QG LAGWV+QHGA PWA Sbjct 237 HDPVIAAAGKIQGTLAGWVHQHGALPWA 264 >gi|169630325|ref|YP_001703974.1| mercuric transporter MerT [Mycobacterium abscessus ATCC 19977] gi|169242292|emb|CAM63320.1| Mercury resistance transport protein/cytochrome c biogenesis protein [Mycobacterium abscessus] Length=254 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 134/242 (56%), Positives = 170/242 (71%), Gaps = 4/242 (1%) Query 42 RTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGG 101 G A+ RA ATV MA GF+ VF +FG LT+S A+ +QRYLP+ TV+ G+ L+ LG Sbjct 8 EIGKSQALARAVIATVVMAGGFVAVFTVFGLLTVSVASVIQRYLPFVTVVFGIGLVILGL 67 Query 102 WLLLGRGLTALTPRSLGVRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGS 161 WLL GR + AL P+ L APT RLGSM+GYG+ YAVASLSCTIGPFLAVT GS Sbjct 68 WLLAGRDIIALMPKMLDAN-APTTRLGSMFGYGVGYAVASLSCTIGPFLAVTSTTFESGS 126 Query 162 VVGSVAIYLAYVAGLTLVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVG 221 + V +YLAY +G+TLVVG LAV+ A AS+ L +RR LP++NR+SGA+L+VVG YVG Sbjct 127 LFDGVMVYLAYASGITLVVGTLAVSTALASTMLLKAMRRALPYLNRVSGAILIVVGAYVG 186 Query 222 YYGLYELRLIAGVGANPQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTW 281 YYG YE+RL G NP D +I AAG++Q ++GWV HGAWPW +L ++ VG A W Sbjct 187 YYGSYEVRLFHANG-NPDDPIINAAGKIQRTISGWVYLHGAWPWLFILGLVAVG--AAIW 243 Query 282 FR 283 +R Sbjct 244 WR 245 >gi|5051812|emb|CAB45041.1| putative integral membrane transporter [Amycolatopsis orientalis] Length=298 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/253 (55%), Positives = 178/253 (71%), Gaps = 7/253 (2%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLT 65 +G A AAG++A +NPCGFAMLPAYL LVV G+ ++AV RA A T MALGFL Sbjct 6 LGFALAAGMIATVNPCGFAMLPAYLTLVVSGESRP----TMNAVWRALAVTGLMALGFLA 61 Query 66 VFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTV 125 VFG FG + ++VQ YLP ATV+IG+ ++ LG W+L G+ +T L P+ + APT Sbjct 62 VFGAFGLVVAPLGSSVQEYLPAATVVIGVVMVGLGAWMLAGKQITLLVPKPR--KGAPTA 119 Query 126 RLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAV 185 RL SM+GYG++YAV SLSCTIGPFLAVT R GSVV +A YL Y G+ LVVGVLAV Sbjct 120 RLSSMFGYGLAYAVVSLSCTIGPFLAVTSQTFRSGSVVTGIAAYLVYALGMALVVGVLAV 179 Query 186 AAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAA 245 + A AS+A+ +RR+LP+VNRI GA+LV+ GLY+GYYG+YELRL G + D ++ Sbjct 180 SVALASTAVTTWVRRVLPYVNRIGGAILVLAGLYIGYYGVYELRLFHA-GGSADDPIVDG 238 Query 246 AGRLQGALAGWVN 258 AG++Q L+ WV+ Sbjct 239 AGKVQALLSEWVD 251 >gi|183985026|ref|YP_001853317.1| hypothetical protein MMAR_5058 [Mycobacterium marinum M] gi|183178352|gb|ACC43462.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=295 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 145/287 (51%), Positives = 180/287 (63%), Gaps = 8/287 (2%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 +N A + A AGLVAALNPCGFA LP YL LV+ G R AV RA AAT GM+ Sbjct 2 INTAALSFALGAGLVAALNPCGFAFLPGYLGLVIAGSQGTSRP---RAVLRAGAATAGMS 58 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGFLTVFG+FG L + QRYLP+ATV+IG+ L+ L WLL G+ L+ + P+S+G Sbjct 59 LGFLTVFGVFGLLISPVIASAQRYLPFATVVIGVLLVGLAIWLLAGKELSIILPKSMG-- 116 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 PT RLGSMYGYG+ YAVASLSCT+ PFLAV + GSV+ V ++AY G+TL V Sbjct 117 GTPTTRLGSMYGYGVGYAVASLSCTVAPFLAVISTTFKQGSVLSGVLAFVAYAVGMTLTV 176 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GV A+ A A S+ RRILPFV RI+G ++++ GLYV YYG YE+RL A D Sbjct 177 GVAALTVALAGSSATAAFRRILPFVGRIAGVIVLITGLYVAYYGYYEIRLYF-TSAETDD 235 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVRR 287 VI AA LQ +L V+ G PW ++ V + A A W RR Sbjct 236 PVIQAASTLQDSLIRLVD--GLSPWLLVGVAAALVAVAVGWHTLARR 280 >gi|317508493|ref|ZP_07966160.1| cytochrome C biogenesis protein [Segniliparus rugosus ATCC BAA-974] gi|316253184|gb|EFV12587.1| cytochrome C biogenesis protein [Segniliparus rugosus ATCC BAA-974] Length=289 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/285 (49%), Positives = 187/285 (66%), Gaps = 11/285 (3%) Query 3 EALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYG---QDSAGRTGPLSAVGRAAAATVGM 59 E + LA AGLVAALNPCGFA LP YL LV+ G DS R AV RA AATV M Sbjct 4 ETALSLALGAGLVAALNPCGFAFLPGYLGLVIAGSGQDDSRWR-----AVLRAGAATVAM 58 Query 60 ALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGV 119 A GFLTVFG+FG + + Q+YLP+ TV++G LIA+G WLL GR + + P++ Sbjct 59 AAGFLTVFGLFGLVISPVLASAQKYLPFGTVVVGALLIAMGVWLLSGRDVVVMLPKTASG 118 Query 120 RWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLV 179 + PT RLGSMYGYG+ YAVASLSCT+ PFLAV GA + GS++ V ++AY G+ + Sbjct 119 K--PTARLGSMYGYGLGYAVASLSCTVAPFLAVVGATFQRGSLLTGVLAFVAYAGGMAVT 176 Query 180 VGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQ 239 VG +A+A A S+++ ++R +LP +NR +GA++++ GLYV YYG YE+RL G +P+ Sbjct 177 VGAVALAVALFGSSVSAKIRGLLPHINRAAGAVVLLTGLYVAYYGYYEIRLFFYDG-DPR 235 Query 240 DAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRR 284 + ++ AAG QG L V++ G WP+A + +VV A A RR Sbjct 236 NPIVEAAGSAQGWLESRVDELGFWPFAWTIAAIVVIATAPAVLRR 280 >gi|333989290|ref|YP_004521904.1| hypothetical protein JDM601_0650 [Mycobacterium sp. JDM601] gi|333485258|gb|AEF34650.1| integral membrane protein [Mycobacterium sp. JDM601] Length=282 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 139/266 (53%), Positives = 173/266 (66%), Gaps = 8/266 (3%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 ++ A + A AGLVAALNPCGFA LP YL LV+ G R +A+ RA AATV M+ Sbjct 2 IDSATLSFALGAGLVAALNPCGFAFLPGYLGLVIAGSRDTSRP---AALARAGAATVAMS 58 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 GFLTVFGIFG + QRYLP+ATV+IG+ L+A+G WLL GR + L P + G Sbjct 59 AGFLTVFGIFGLAVSPLIASAQRYLPFATVVIGVLLLAMGAWLLSGRDIAVLLPAAGG-- 116 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 APT RL SMYGYG+ YAVASLSCTI PFLAV + GS + V ++AY AG+++ V Sbjct 117 -APTARLASMYGYGVGYAVASLSCTIAPFLAVISTTFQQGSALAGVLAFVAYAAGMSITV 175 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLI--AGVGANP 238 GV A+A A A S+ LRR+LP+V RI+G +++V GLYV YYG YE+RL G A Sbjct 176 GVAALAVALAGSSATSALRRVLPYVGRIAGVIVLVTGLYVTYYGYYEIRLYFSGGSSAEA 235 Query 239 QDAVIAAAGRLQGALAGWVNQHGAWP 264 D VI AAG +Q LA V+ G WP Sbjct 236 DDPVIHAAGAVQSWLADRVDALGVWP 261 >gi|169631353|ref|YP_001705002.1| hypothetical protein MAB_4275c [Mycobacterium abscessus ATCC 19977] gi|169243320|emb|CAM64348.1| Conserved hypothetical protein (Mercury resistance transport protein?) [Mycobacterium abscessus] Length=283 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 129/265 (49%), Positives = 172/265 (65%), Gaps = 7/265 (2%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQD-SAGRTGPLSAVGRAAAATVGM 59 ++ A + A AGLVAALNPCGFA LP YL LV+ G D +A R ++ A A G Sbjct 2 IDTAALTFALGAGLVAALNPCGFAFLPGYLGLVIAGSDGTASRMTAIARAATATVAMAG- 60 Query 60 ALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGV 119 GFLTVFG+FG + + RY+P+ATV+IG+ L+AL WLL GR LT + PR G Sbjct 61 --GFLTVFGVFGLVVSPVVASAGRYMPFATVVIGVVLVALSIWLLCGRELTLVLPRVSG- 117 Query 120 RWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLV 179 APT L SM+GYG++YAVASLSCT+GPFLAV + GS+V V ++AY AG+ + Sbjct 118 -GAPTASLLSMFGYGLTYAVASLSCTVGPFLAVISTTFKQGSIVSGVLAFIAYGAGMAVT 176 Query 180 VGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQ 239 VGV A+A A +++ +R++LP+V RI+G ++++ GLYV YYG YE+RL G G + Sbjct 177 VGVAALAVALLGNSVQATMRKVLPYVGRIAGVIVLLTGLYVAYYGYYEIRLNFGDG-SAD 235 Query 240 DAVIAAAGRLQGALAGWVNQHGAWP 264 D VI AAG +Q L G V+ G WP Sbjct 236 DPVINAAGTVQAWLVGVVDATGVWP 260 >gi|240171058|ref|ZP_04749717.1| hypothetical protein MkanA1_17234 [Mycobacterium kansasii ATCC 12478] Length=292 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 138/264 (53%), Positives = 175/264 (67%), Gaps = 5/264 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 ++ A +G A AGLVAALNPCGFA+LP YL LV+ G S + P+ A+ RA +AT+ M+ Sbjct 2 IDTAPLGFALGAGLVAALNPCGFALLPGYLGLVIAG-GSQTTSRPM-ALARAGSATLVMS 59 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 GFLTVFG+FG L +VQ+YLP ATV+IG+ LIA WLL G+ + +TP+ G Sbjct 60 AGFLTVFGVFGLLISPLIASVQKYLPVATVVIGVVLIASAIWLLAGKDIAVMTPKLAG-- 117 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 APT RL SMYGYG++YAVASLSCTIGPFLA+ R GS V V +L Y +G+ + V Sbjct 118 GAPTARLRSMYGYGVAYAVASLSCTIGPFLALISTTFRHGSTVTGVLAFLVYASGMAITV 177 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GV A+ A S+ LRRILP+V RI+GALL++ GLYV YYG YE+ L GA+ D Sbjct 178 GVAALTVAFVGSSATGGLRRILPYVGRIAGALLLLTGLYVTYYGYYEISLYFS-GASADD 236 Query 241 AVIAAAGRLQGALAGWVNQHGAWP 264 VIAAAG +Q V+ G WP Sbjct 237 PVIAAAGTVQSWAVRHVDALGVWP 260 >gi|119714252|ref|YP_919394.1| cytochrome c biogenesis protein, transmembrane region [Nocardioides sp. JS614] gi|119526161|gb|ABL79531.1| cytochrome c biogenesis protein, transmembrane region [Nocardioides sp. JS614] Length=297 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/261 (50%), Positives = 162/261 (63%), Gaps = 3/261 (1%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 + + A AAG +AA+NPCGFAMLPAYL L V R ++AVGRA AAT M Sbjct 1 MTSETLAFALAAGTLAAVNPCGFAMLPAYLSLFVAAGPGEARRSTVAAVGRALAATGSMT 60 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 LGF+ VFG+FG A+ VQR+LP ATV+IG+ L +G LL GR LT P L + Sbjct 61 LGFVAVFGVFGLALTPVASTVQRWLPVATVVIGMVLFVMGLLLLAGRNLTLHVP-FLRLS 119 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 P +M YG+SYAVASL CTIGPFL VT R G+ + VA Y Y G+ LVV Sbjct 120 KDPVASPLAMALYGVSYAVASLGCTIGPFLVVTATTFRAGNTLNGVAAYATYALGMGLVV 179 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GVLA+ AA S+ A LRR+ P++ R+SG LLVV G YVG+YG YELR+ AG + D Sbjct 180 GVLAIGAALMSNTAAGILRRLTPYLTRLSGVLLVVAGGYVGWYGWYELRVYAGDATD--D 237 Query 241 AVIAAAGRLQGALAGWVNQHG 261 V++ A +Q +A WV+Q G Sbjct 238 PVVSTASDIQSRIAAWVDQLG 258 >gi|145594085|ref|YP_001158382.1| cytochrome c biogenesis protein, transmembrane region [Salinispora tropica CNB-440] gi|145303422|gb|ABP54004.1| cytochrome c biogenesis protein, transmembrane region [Salinispora tropica CNB-440] Length=303 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/271 (50%), Positives = 170/271 (63%), Gaps = 7/271 (2%) Query 18 LNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISA 77 +NPCGFA+LPAYL ++V G A GPL+ VGRA A T M LGF+ VFG FG L A Sbjct 18 VNPCGFALLPAYLSMLVLGDGPADGRGPLAPVGRALALTAAMTLGFVAVFGGFGLLAGPA 77 Query 78 ATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVR--LGSMYGYGI 135 A A+ LP+ +V IGLAL+A GGWL+ GR L PR + P VR GSM +G Sbjct 78 ADALASRLPWVSVAIGLALVATGGWLVAGRALPTFAPR---IANGPEVRRSFGSMVLFGA 134 Query 136 SYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALA 195 +YA+ASL CTIGPFLAV AG R GS + V +++AY G+ L+VG A+A A A +L Sbjct 135 AYAIASLGCTIGPFLAVVVAGFRAGSPLAGVGLFVAYAVGMGLMVGAAALAVALARESLV 194 Query 196 DRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGALAG 255 R RR P + R++G LLV+ G YV +YG YE+RL AG A+ D VI AAGR+Q ++G Sbjct 195 RRTRRAGPLLGRVAGLLLVLTGGYVAWYGWYEIRLFAGGDAD--DPVIDAAGRVQTTVSG 252 Query 256 WVNQHGAWPWAVLLVVLVVGAFAGTWFRRVR 286 WVN G W + L+ A AGT RR R Sbjct 253 WVNSLGPWTIGAAVAALLAAAVAGTLLRRHR 283 >gi|240169784|ref|ZP_04748443.1| hypothetical protein MkanA1_10752 [Mycobacterium kansasii ATCC 12478] Length=300 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/268 (49%), Positives = 171/268 (64%), Gaps = 8/268 (2%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMA 60 ++ + A AGLVAALNPCGFA LP+YL LV+ G R +A+ RA AAT GM+ Sbjct 2 IDTTALSFALGAGLVAALNPCGFAFLPSYLGLVIAGSQGVSRP---TALVRAGAATAGMS 58 Query 61 LGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVR 120 +GFLTVFGIFG L + QRYLP+ATV+IG+ L+AL WLL G+ ++ + P+ G Sbjct 59 VGFLTVFGIFGLLVAPVIASAQRYLPFATVVIGVLLVALAVWLLAGKDVSLILPKRAG-- 116 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 PT RL SMYGYG+ YA+ASLSCT+ PFLAV R G+V+ V ++AY G+T+ V Sbjct 117 GTPTTRLTSMYGYGVGYAIASLSCTVAPFLAVISTTFRQGAVLSGVLAFVAYAGGMTITV 176 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 GV A+ A A SA RR+LP+V RI G ++++ GLYV YYG YELRL A D Sbjct 177 GVAALTVALAGSAATAAFRRVLPYVGRIVGVIVLLTGLYVTYYGYYELRLYFA-NAEADD 235 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVL 268 VI AA +Q L V+ G PW+++ Sbjct 236 PVIGAANAVQDRLIQLVD--GLSPWSLV 261 >gi|317506825|ref|ZP_07964599.1| cytochrome C biogenesis protein [Segniliparus rugosus ATCC BAA-974] gi|316254899|gb|EFV14195.1| cytochrome C biogenesis protein [Segniliparus rugosus ATCC BAA-974] Length=305 Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 127/263 (49%), Positives = 164/263 (63%), Gaps = 10/263 (3%) Query 9 AFAAGLVAALNPCGFAMLPAYLLLVVYGQDS--AGRTGPLSAVGRAAAATVGMALGFLTV 66 AF GLV ALNPCGFAMLPAYL LVV G+D+ GR LS+ RA AT MALGF+ V Sbjct 12 AFIQGLVGALNPCGFAMLPAYLSLVVLGEDTTQEGRRS-LSSALRALVATAAMALGFVLV 70 Query 67 FGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLL----GRGLTALTPRSLGVRWA 122 FG FG L+ S + +QRYLP AT+++G +I LG W L G + P+ G Sbjct 71 FGSFGLLSDSLSWRIQRYLPAATMVVGATMIVLGLWFLWRILRGNEVVVRLPKWSGG--T 128 Query 123 PTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGV 182 PT R+GSM+GYG++YA++SLSC G F+ V R G+ + LAY G+T VVG Sbjct 129 PTARIGSMFGYGVAYAISSLSCGFGSFVTVISLTFRSGANNLGLLACLAYAGGMTAVVGS 188 Query 183 LAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAV 242 LAV+AA A + ++ LR +LP+++ IS AL+V GLYVGYYG YE RL G +P + + Sbjct 189 LAVSAALAHNVISAALRWVLPYISIISAALVVATGLYVGYYGWYEYRLFQANG-DPNNPL 247 Query 243 IAAAGRLQGALAGWVNQHGAWPW 265 I+ A +Q LA VN AW W Sbjct 248 ISMALAVQSWLAAAVNAFSAWQW 270 >gi|331695157|ref|YP_004331396.1| cytochrome c biogenesis protein transmembrane region [Pseudonocardia dioxanivorans CB1190] gi|326949846|gb|AEA23543.1| cytochrome c biogenesis protein transmembrane region [Pseudonocardia dioxanivorans CB1190] Length=288 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 155/266 (59%), Positives = 189/266 (72%), Gaps = 7/266 (2%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQ-DSAGRTGPLSAVGRAAAATVGM 59 V+ + +G A AAGLVAALNPCGFAMLP+YL LVV G D R+ VGRA AAT M Sbjct 2 VDTSTLGFALAAGLVAALNPCGFAMLPSYLTLVVLGAGDRQSRS---VVVGRALAATAAM 58 Query 60 ALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGV 119 A GFL VF +FG + A+ VQRYLP T++IG AL+ LGGWLL GR +T + P+ Sbjct 59 AAGFLVVFAVFGLIVAPLASQVQRYLPIVTIVIGAALLGLGGWLLAGREITLMLPKPR-- 116 Query 120 RWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLV 179 + APT L SM+GYG++YA+ASLSCTIGPFLAVT A R GSVVG V YL+Y AG+ LV Sbjct 117 KGAPTAGLRSMFGYGLAYAIASLSCTIGPFLAVTAATFRAGSVVGGVLAYLSYAAGMALV 176 Query 180 VGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQ 239 VGVLA A A + +A R RR+LP+VNRISG LLV+VGLYVGYYG+YE RL G G + + Sbjct 177 VGVLAAGIALAGAGIATRARRLLPYVNRISGGLLVLVGLYVGYYGIYETRLYFG-GGDAR 235 Query 240 DAVIAAAGRLQGALAGWVNQHGAWPW 265 D VI AA +Q A+AGW++ G P+ Sbjct 236 DPVIDAAASVQQAVAGWIDAIGVVPF 261 >gi|159037116|ref|YP_001536369.1| cytochrome c biogenesis protein transmembrane region [Salinispora arenicola CNS-205] gi|157915951|gb|ABV97378.1| cytochrome c biogenesis protein transmembrane region [Salinispora arenicola CNS-205] Length=304 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 132/248 (54%), Positives = 163/248 (66%), Gaps = 7/248 (2%) Query 18 LNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISA 77 +NPCGFA+LPAYL ++V G A GPL+ VGRA A TV M LGF+ VFG FG L A Sbjct 18 VNPCGFALLPAYLSMLVLGDGPADGRGPLAPVGRALALTVAMTLGFVAVFGGFGLLAGPA 77 Query 78 ATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVR--LGSMYGYGI 135 A A+ LP+ +V IGLAL+A GGWL+ GR L A TP G P VR GSM+ +G Sbjct 78 ADALASRLPWVSVAIGLALVATGGWLVAGRALPAFTPLMAG---GPKVRRSFGSMFLFGA 134 Query 136 SYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALA 195 +YA+ASL CTIGPFLAV AG R GS + V +++AY G+ LVVG A+A A A +L Sbjct 135 AYAIASLGCTIGPFLAVVVAGFRAGSPLAGVGLFVAYAVGMGLVVGAAALAVALARESLV 194 Query 196 DRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGALAG 255 R RR P + R++G LLV+ G YV +YG YE+RL AG A+ D VI AAGR Q A++G Sbjct 195 RRTRRAAPLLGRLAGLLLVLTGGYVAWYGWYEIRLFAGGDAD--DPVIEAAGRAQTAISG 252 Query 256 WVNQHGAW 263 WVN G W Sbjct 253 WVNDLGPW 260 >gi|296393689|ref|YP_003658573.1| cytochrome C biogenesis protein transmembrane region [Segniliparus rotundus DSM 44985] gi|296180836|gb|ADG97742.1| cytochrome c biogenesis protein transmembrane region [Segniliparus rotundus DSM 44985] Length=305 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/289 (46%), Positives = 173/289 (60%), Gaps = 8/289 (2%) Query 2 NEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDS--AGRTGPLSAVGRAAAATVGM 59 + ++ AF GLV ALNPCGFAMLPAYL LVV G D+ AGR L + RA AAT M Sbjct 5 HTEILYYAFLQGLVGALNPCGFAMLPAYLSLVVLGDDTTQAGRQS-LFSAVRALAATAAM 63 Query 60 ALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLL--LGRGLTALTPRSL 117 +LGF+ VFG FG + S A +QR LP AT LIG A++ LG W + L RG A+ Sbjct 64 SLGFVVVFGCFGFASDSIAWEMQRSLPVATALIGAAMVLLGLWFMVRLLRGGDAMIRLPR 123 Query 118 GVRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLT 177 R PT RL SM+GYG++YAV+SLSC G F+ V + G+ + LAY G+T Sbjct 124 WSRGTPTTRLSSMFGYGLAYAVSSLSCGFGSFVTVISLTFQAGASNLGLLSCLAYAGGMT 183 Query 178 LVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGAN 237 VVG LAV+AA A + +A LR++LP ++++S L+++ GLY+ YYGLYE RL+ G + Sbjct 184 AVVGSLAVSAALAHNVIATGLRKLLPHISKVSAVLVMLTGLYIAYYGLYEYRLLREDG-D 242 Query 238 PQDAVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRRVR 286 +IA A +QG L V+ W W +L L+ AG W VR Sbjct 243 QGSQIIAGALAVQGWLTAAVDAFSPWEWVAILCFLLF--LAGVWTAFVR 289 >gi|291299662|ref|YP_003510940.1| cytochrome c biogenesis protein transmembrane region [Stackebrandtia nassauensis DSM 44728] gi|290568882|gb|ADD41847.1| cytochrome c biogenesis protein transmembrane region [Stackebrandtia nassauensis DSM 44728] Length=257 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/237 (47%), Positives = 147/237 (63%), Gaps = 8/237 (3%) Query 19 NPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISAA 78 NPCGFA+LPAY ++ G + + + RA A T M LGF+ VFG+FG A Sbjct 19 NPCGFALLPAYATFLITGDEEPTTRRWWTTIARALALTAAMTLGFVLVFGLFGVAIAPFA 78 Query 79 TAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLG--SMYGYGIS 136 + ++LP+ T++IGL L+A G WL LGR L ++ P+ G P VR SM +G + Sbjct 79 PWLTQHLPWLTIVIGLLLVAAGVWLALGRELPSIVPKLGG----PKVRRSFVSMTVFGAA 134 Query 137 YAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALAD 196 +A+ASL CTI PFLAV + R SVV V +YLAY G+ LV+GV+++A A A L Sbjct 135 FAIASLGCTIAPFLAVVVSTFRTESVVAGVGLYLAYALGMGLVIGVVSLAIALAKDGLVK 194 Query 197 RLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGAL 253 R+RR LP V+RI+GALL+V G YV YYG YELR+ A G + D V+AAA +Q L Sbjct 195 RVRRALPLVSRIAGALLLVAGAYVAYYGWYELRVAA--GGDTDDPVVAAASEIQAWL 249 >gi|296394288|ref|YP_003659172.1| cytochrome C biogenesis protein transmembrane region [Segniliparus rotundus DSM 44985] gi|296181435|gb|ADG98341.1| cytochrome c biogenesis protein transmembrane region [Segniliparus rotundus DSM 44985] Length=286 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 123/247 (50%), Positives = 162/247 (66%), Gaps = 5/247 (2%) Query 19 NPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVFGIFGALTISAA 78 NPCGFA LP L LV+ G S+ G +AV RAAAATV MA GF+TVFG+FG + Sbjct 20 NPCGFAFLPGCLGLVIAG--SSQDVGRRTAVARAAAATVAMAAGFVTVFGLFGLVISPLL 77 Query 79 TAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLGSMYGYGISYA 138 + Q+YLPYAT++IG+ LIA G WLLLG + + PR G APT +LGSMYGYG+ YA Sbjct 78 ASAQKYLPYATLVIGVLLIATGVWLLLGNDIAVMLPRPGG--GAPTAQLGSMYGYGVGYA 135 Query 139 VASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALADRL 198 ASLSCT GPFLA+ GA + GS + V +L Y G+ + VG LA+A A S++A R+ Sbjct 136 TASLSCTAGPFLALIGATFQKGSWLTGVLAFLVYAGGMAITVGALALAVALLGSSVAGRI 195 Query 199 RRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAGRLQGALAGWVN 258 R +LP + RI+GA++++ GLYV YYG YE +L G +P+D V+ A +Q L V Sbjct 196 RGLLPHITRIAGAVVLLTGLYVTYYGYYERQLFFSHG-SPRDPVVERAASVQMWLQSHVG 254 Query 259 QHGAWPW 265 + G WP+ Sbjct 255 ELGPWPF 261 >gi|119716306|ref|YP_923271.1| cytochrome c biogenesis protein, transmembrane region [Nocardioides sp. JS614] gi|119536967|gb|ABL81584.1| cytochrome c biogenesis protein, transmembrane region [Nocardioides sp. JS614] Length=297 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 111/262 (43%), Positives = 148/262 (57%), Gaps = 17/262 (6%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLT 65 +GLA AG++AA+NPCGFA+LPAYL L V R +A+ RA AT + +GF Sbjct 1 MGLALGAGMLAAVNPCGFALLPAYLSLFVLDHQQLPRR---TALLRAMRATAALTMGFTV 57 Query 66 VFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTAL------TPRSLGV 119 VFG+FG A +VQ YLP TV +GL + G W+LLGR L A+ R + Sbjct 58 VFGVFGIAVAPVAASVQSYLPGFTVALGLLVAVAGLWVLLGRRLPAIRLTRGANARPVTA 117 Query 120 RWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLV 179 W SM G+G SYAVASL CTI PFLAV R GS + +++AY AG+ V Sbjct 118 SWL------SMTGFGASYAVASLGCTIAPFLAVVVTSFRSGSPAQGLVLFVAYAAGMGFV 171 Query 180 VGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQ 239 VG A+A A A L +R+R I + R+ G +LV+ G YV +YG++ELR++ + Sbjct 172 VGAAAMATALARGGLVNRVRSIGGVLPRVGGLVLVLAGGYVAWYGIWELRVLHADAG--R 229 Query 240 DAVIAAAGRLQGALAGWVNQHG 261 DAV+ A +Q LA V G Sbjct 230 DAVVEQAASIQRWLADRVEAVG 251 >gi|315504338|ref|YP_004083225.1| cytochrome c biogenesis protein transmembrane region [Micromonospora sp. L5] gi|315410957|gb|ADU09074.1| cytochrome c biogenesis protein transmembrane region [Micromonospora sp. L5] Length=327 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 114/254 (45%), Positives = 148/254 (59%), Gaps = 7/254 (2%) Query 8 LAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVF 67 LA AG++ A+NPCGFAMLPAYL L+V G D G AVGRA AT G+ LG++ VF Sbjct 7 LALTAGMLGAVNPCGFAMLPAYLSLLVAGPD-----GGRGAVGRALTATAGLTLGYVLVF 61 Query 68 GIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRL 127 G FG AA ++ LP+ TV +G+ L G WLL GR L TPR L V T Sbjct 62 GAFGLALAPAADWLRPRLPWLTVTLGVLLALAGCWLLAGRRLP--TPRPLRVAPRLTRTW 119 Query 128 GSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAA 187 SM +G +YA+ SL+C I PFLA+ LR GS + +A++ AY G+ LVVGV A+A Sbjct 120 PSMALFGAAYALTSLTCAIAPFLAIVVTSLRAGSPLRGLALFGAYALGMALVVGVAALAV 179 Query 188 ATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAG 247 A + RLR +V R+SG +L+V G YV +YG YE+RL G D VI A Sbjct 180 ALLRGRVVARLRGAGAWVPRLSGLVLLVAGGYVAWYGWYEVRLAQGRYDAFTDPVIRTAA 239 Query 248 RLQGALAGWVNQHG 261 R+Q ++ V+ G Sbjct 240 RIQQSVVSTVDTLG 253 >gi|302869185|ref|YP_003837822.1| cytochrome c biogenesis protein transmembrane region [Micromonospora aurantiaca ATCC 27029] gi|302572044|gb|ADL48246.1| cytochrome c biogenesis protein transmembrane region [Micromonospora aurantiaca ATCC 27029] Length=328 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 114/254 (45%), Positives = 148/254 (59%), Gaps = 7/254 (2%) Query 8 LAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLTVF 67 LA AG++ A+NPCGFAMLPAYL L+V G D G AVGRA AT G+ LG++ VF Sbjct 7 LALTAGMLGAVNPCGFAMLPAYLSLLVAGPD-----GGRGAVGRALTATAGLTLGYVLVF 61 Query 68 GIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRL 127 G FG AA ++ LP+ TV +G+ L G WLL GR L TPR L V T Sbjct 62 GAFGLALAPAADWLRPRLPWLTVTLGVLLALAGCWLLAGRRLP--TPRPLRVAPRLTRTW 119 Query 128 GSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAA 187 SM +G +YA+ SL+C I PFLA+ LR GS + +A++ AY G+ LVVGV A+A Sbjct 120 PSMALFGAAYALTSLTCAIAPFLAIVVTSLRAGSPLRGLALFGAYALGMALVVGVAALAV 179 Query 188 ATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAVIAAAG 247 A + RLR +V R+SG +L+V G YV +YG YE+RL G D VI A Sbjct 180 ALLRGRVVARLRGAGAWVPRLSGLVLLVAGGYVAWYGWYEVRLAQGRYDAFTDPVIRTAA 239 Query 248 RLQGALAGWVNQHG 261 R+Q ++ V+ G Sbjct 240 RIQQSVVSTVDTLG 253 >gi|238060459|ref|ZP_04605168.1| cytochrome c biogenesis protein, transmembrane region [Micromonospora sp. ATCC 39149] gi|237882270|gb|EEP71098.1| cytochrome c biogenesis protein, transmembrane region [Micromonospora sp. ATCC 39149] Length=301 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/199 (42%), Positives = 115/199 (58%), Gaps = 7/199 (3%) Query 3 EALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALG 62 +A + LA AG++ A+NPCGFAMLPAYL ++V G A A+GRA A G+ G Sbjct 2 DAPLLLALTAGMLGAVNPCGFAMLPAYLSILVAGPGDAR-----GALGRALTAAAGLTCG 56 Query 63 FLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWA 122 ++ VFG FG A ++ LP+ TV +G+ L+ LG WLL GR L A P + R Sbjct 57 YVLVFGAFGLAFAPLAGWLRPRLPWLTVTLGVGLVLLGCWLLAGRRLPAPLPLARAPRL- 115 Query 123 PTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGV 182 T L SM +G +YA+ASL+C+I PFLA+ L+ GS +A+++AY G+ LVV Sbjct 116 -TRTLPSMVLFGAAYALASLTCSIAPFLAIVATSLQAGSTSRGLALFVAYALGMGLVVAE 174 Query 183 LAVAAATASSALADRLRRI 201 A+ A + RLR + Sbjct 175 DALGVALLRDRVVARLREV 193 >gi|330469509|ref|YP_004407252.1| cytochrome c biogenesis protein transmembrane region [Verrucosispora maris AB-18-032] gi|328812480|gb|AEB46652.1| cytochrome c biogenesis protein transmembrane region [Verrucosispora maris AB-18-032] Length=322 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 112/259 (44%), Positives = 148/259 (58%), Gaps = 7/259 (2%) Query 3 EALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALG 62 EA + LA AG++ A+NPCGFAMLPAYL L+V AG T AV RA A + +G Sbjct 2 EATLLLALTAGMLGAVNPCGFAMLPAYLSLLV-----AGATDTRGAVRRALTAAAALTVG 56 Query 63 FLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWA 122 ++ VFG FG A ++ LP+ TV +GL L+ LG WLL GR L L P + R Sbjct 57 YVVVFGAFGLALAPVAGWLRPRLPWFTVGLGLLLVLLGCWLLAGRRLPTLRPLARAPRL- 115 Query 123 PTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGV 182 T SM +G++YAVASL C I PFLA+ LR G++ +A++ AY G+ LVV V Sbjct 116 -TRSWPSMVLFGMAYAVASLGCAIAPFLAIVVTSLRAGTLPRGLALFGAYALGMGLVVAV 174 Query 183 LAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQDAV 242 A+ A + RLR +V R+SG +L++ G YV +YG YE RL AG A D V Sbjct 175 AALGVALLRGEVVARLRNAGAWVPRLSGLVLLLAGGYVAWYGWYEARLFAGHRAALTDPV 234 Query 243 IAAAGRLQGALAGWVNQHG 261 I A R+Q LA ++ G Sbjct 235 ILTAARVQRWLAATLDTAG 253 >gi|108804608|ref|YP_644545.1| cytochrome c biogenesis protein, transmembrane region [Rubrobacter xylanophilus DSM 9941] gi|108765851|gb|ABG04733.1| cytochrome c biogenesis protein, transmembrane region [Rubrobacter xylanophilus DSM 9941] Length=253 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/221 (40%), Positives = 120/221 (55%), Gaps = 3/221 (1%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVV-YGQDSAGRTGPLSAVGRAAAATVGMALGFL 64 G+AF AG+VAA+NPCGFAMLPAYL L + +D + + + RA ++LGF+ Sbjct 21 FGVAFGAGMVAAVNPCGFAMLPAYLSLYLGAEEDGFAKRSVAARLLRALLVGATVSLGFV 80 Query 65 TVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAP- 123 +F + G S A+ +P+ VLIG AL+ LG W+L GR L A R Sbjct 81 LLFSLVGVAVSSGGVALLAAMPWVGVLIGAALVVLGLWMLAGRTLHAGAFERFAARIGDP 140 Query 124 -TVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGV 182 V L + +G++Y V SLSCT+ FL V G G+ G ++ +LA+ G+ V+ Sbjct 141 GDVSLKGFFLFGLAYGVGSLSCTLPVFLMVVGTGIASGGLLSGAGQFLAFGLGMASVLVA 200 Query 183 LAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 L +A A L RLR +P+V S ALLVV G YV YY Sbjct 201 LTLALALFKQGLVKRLRGAMPYVRLASAALLVVAGAYVVYY 241 >gi|218290788|ref|ZP_03494865.1| cytochrome c biogenesis protein transmembrane region [Alicyclobacillus acidocaldarius LAA1] gi|218239223|gb|EED06423.1| cytochrome c biogenesis protein transmembrane region [Alicyclobacillus acidocaldarius LAA1] Length=231 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/232 (37%), Positives = 130/232 (57%), Gaps = 13/232 (5%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLT 65 +GL F AG+ AA NPCG AMLP+Y+ +V G ++ T + R A M LGFLT Sbjct 6 LGLVFVAGIAAAFNPCGVAMLPSYVSYLV-GHSASDDTSYWRSGVRGAVVGAWMTLGFLT 64 Query 66 VFGIFGALTISAATAVQRYL-PYATVLIGLALIALGGWLLLGRGLTALTPR---SLGVRW 121 VF + G L ISA V L P+ + IG+ L+A+G +L GR T + +LG R Sbjct 65 VF-VSGGLAISAVGEVLYQLAPWLSTGIGVLLVAMGILMLRGRTFEINTMKYTGNLGSR- 122 Query 122 APTVRLGS---MYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTL 178 +R GS M+ YGI YA+ASL C + FL + + G + ++ ++ Y G+ Sbjct 123 ---LRRGSGWSMFIYGILYAIASLGCALPVFLVLVSQSVIVGRLSEAILHFILYSLGMGF 179 Query 179 VVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRL 230 VV L+V A + + + RL++ILP+V+++SG +++ GLY+ Y + + L Sbjct 180 VVVTLSVLAMISQAYVRTRLKKILPWVSKVSGMIIIAAGLYILDYWILKHHL 231 >gi|227503929|ref|ZP_03933978.1| cytochrome c biogenesis protein transmembrane protein [Corynebacterium striatum ATCC 6940] gi|227199552|gb|EEI79600.1| cytochrome c biogenesis protein transmembrane protein [Corynebacterium striatum ATCC 6940] Length=321 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/224 (41%), Positives = 129/224 (58%), Gaps = 11/224 (4%) Query 5 LIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFL 64 ++GLAF G++A +NPCGFAMLP YL + AGR PL A A V ++ GF Sbjct 4 VLGLAFLTGMLATVNPCGFAMLPTYLAYFIGSGPGAGRKRPLLA---GLQAGVALSAGFA 60 Query 65 TVFGIFGALTISAATAVQRYLPYATVLIGLALIALG-----GWLLLGRGLTALTPRSLGV 119 TVF G L +V LP+A LIG ++ G GW L G L PR L Sbjct 61 TVFVTAGLLAAVGLRSVASALPWAAALIGAVIVVAGLGMVFGWQLPGARLN--LPRILKT 118 Query 120 RWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLV 179 + L +++GYG++YAVA+LSC++ LAV + GS+ G +A++ AY G ++V Sbjct 119 D-GTSSGLRAVFGYGVAYAVAALSCSLALLLAVVAQAVSTGSLAGLLAVFAAYALGSSVV 177 Query 180 VGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 + +L++ AA A LA +RRILPFVNR+ GA L++ G+Y+ Y Sbjct 178 LVLLSLGAAVARDVLARHVRRILPFVNRLGGAALILAGIYLLLY 221 >gi|269839112|ref|YP_003323804.1| cytochrome C biogenesis protein transmembrane region [Thermobaculum terrenum ATCC BAA-798] gi|269790842|gb|ACZ42982.1| cytochrome c biogenesis protein transmembrane region [Thermobaculum terrenum ATCC BAA-798] Length=229 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/239 (42%), Positives = 139/239 (59%), Gaps = 20/239 (8%) Query 1 VNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATV--- 57 ++ A I LAF+AGLVAA NPCGFAMLPA L ++ + A T SA GR AA + Sbjct 1 MSSAPIALAFSAGLVAAFNPCGFAMLPALLAYIL--HEVASPTERPSA-GRLAAGLLFGL 57 Query 58 GMALGFLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSL 117 M LGF+ VF +FG L + A+ Y+PY ++L+G AL+ LG +LL G L Sbjct 58 TMTLGFIGVFLVFGVLLTLGSRAIMGYMPYVSLLVGAALVLLGAYLLTGH--------QL 109 Query 118 GVRWAPTVRL------GSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLA 171 +RW P VR+ S + G+ YA+ASLSCT+ FL GA + G + + +++ Sbjct 110 HLRWVPGVRVRRGGGVASFFALGVGYALASLSCTLPIFLVAIGASVAAGGALAGLLAFVS 169 Query 172 YVAGLTLVVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRL 230 Y G+ +VV +AVA A A S L+ +LP+V R+S A++++ GLY+ YY L L L Sbjct 170 YALGMGVVVTGVAVAVAAAGSIAVAWLKGVLPYVQRVSAAIVLLAGLYLIYYQLSLLAL 228 >gi|269839391|ref|YP_003324083.1| cytochrome C biogenesis protein transmembrane region [Thermobaculum terrenum ATCC BAA-798] gi|269791121|gb|ACZ43261.1| cytochrome c biogenesis protein transmembrane region [Thermobaculum terrenum ATCC BAA-798] Length=287 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/225 (37%), Positives = 124/225 (56%), Gaps = 15/225 (6%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLT 65 +G AF AG+VAA+NPCGFA+LPAYL Y D R G + +GRA + + LGF+ Sbjct 63 LGYAFVAGMVAAVNPCGFALLPAYL--AYYLGDDTKRKG--AQLGRALGISAMVTLGFVL 118 Query 66 VFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTV 125 +FG G + + T+V P+ +++G+AL+ LGG +L G + SLG R A + Sbjct 119 LFGTMGVVLAAVTTSVAGVFPWVGLIVGIALVFLGGRMLGGH----MVYSSLGERVADRI 174 Query 126 -------RLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTL 178 LG+ + YG++Y SL CT+ FL V G L G +V + +++Y G+ Sbjct 175 GSRARGRNLGAYFLYGLAYGACSLGCTLPIFLIVVGGTLSAGDLVRGLWQFVSYALGMGA 234 Query 179 VVGVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 V+ L +AAA SS R+R + +V S LL++ G Y+ YY Sbjct 235 VLAALTLAAAVLSSTAIRRVRTLSRWVQPASAVLLLLAGGYIVYY 279 >gi|269836147|ref|YP_003318375.1| cytochrome c biogenesis protein transmembrane region [Sphaerobacter thermophilus DSM 20745] gi|269785410|gb|ACZ37553.1| cytochrome c biogenesis protein transmembrane region [Sphaerobacter thermophilus DSM 20745] Length=248 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/221 (32%), Positives = 119/221 (54%), Gaps = 3/221 (1%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQD-SAGRTGPLSAVGRAAAATVGMALGFL 64 +G AF AG++AA+NPCGFAMLPAYL L + D A + L +GRA ++ GF+ Sbjct 21 LGYAFGAGMLAAVNPCGFAMLPAYLSLYLGVDDGPAAQPNVLRRLGRAVLVGGTVSSGFV 80 Query 65 TVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSL--GVRWA 122 +F G + + A+ +P+ L+G+ +I LG LLLGR ++ T + + + Sbjct 81 LLFAAVGLIISAGGYALVNAMPWLGALMGVVMIVLGFLLLLGRTVSPATFERIAASLSTS 140 Query 123 PTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGV 182 P + + +G++Y +ASL CT+ FL G L G V + ++ Y G+ ++ Sbjct 141 PQRSIRGFFLFGLAYGIASLGCTLPVFLVAVGGALTGAGPVQGLTRFILYSLGMATIIVS 200 Query 183 LAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 L V + + L LRR +P+V+ + L+++ G ++ +Y Sbjct 201 LTVTLSLFKAGLVGLLRRAMPYVHSAAAVLVLLAGFWIVFY 241 >gi|219883286|ref|YP_002478447.1| cytochrome c biogenesis protein transmembrane region [Arthrobacter chlorophenolicus A6] gi|219862131|gb|ACL42471.1| cytochrome c biogenesis protein transmembrane region [Arthrobacter chlorophenolicus A6] Length=341 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 96/284 (34%), Positives = 152/284 (54%), Gaps = 15/284 (5%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAA---AATVGMALG 62 + AF AG+++ +NPCGFAMLPA+L + G++ +GP S + RA A ++LG Sbjct 6 LAFAFGAGMLSTVNPCGFAMLPAFLAYYI-GRNEDTGSGPGSLLRRAMNGLGAGALVSLG 64 Query 63 FLTVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGR--GLTALTPRSLGVR 120 F VF + G L ++ +P+ V+IG+ L +G +L G+ GLT + R Sbjct 65 FAGVFTLTGLLVAIGLRSIIGAVPWVAVIIGILLAGVGIAMLAGKHIGLTVNSNRINRAG 124 Query 121 WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVV 180 P G+M +G +YAVASLSCT+ LAV L S+ + ++ AY G V+ Sbjct 125 RGP----GAMVAFGAAYAVASLSCTLAVLLAVIAQALAANSIPALIGVFAAYAGGAATVL 180 Query 181 GVLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGVGANPQD 240 +LA+++A ASSALA L R ++ R++GA+LV+ G+Y+ Y + L+ G P Sbjct 181 ILLALSSALASSALAKGLHRASRYLPRVAGAVLVLSGVYLVAY--WAPALVTG---QPNQ 235 Query 241 AVIAAAGRLQGALAGWVNQHGAWPWAVLLVVLVVGAFAGTWFRR 284 + L A++G+++ H + + + VV AG W RR Sbjct 236 GIAGGMNALSSAVSGFISAHTVLIGVIAISLAVVVLAAGLWARR 279 >gi|219883293|ref|YP_002478454.1| cytochrome c biogenesis protein transmembrane region [Arthrobacter chlorophenolicus A6] gi|219862138|gb|ACL42478.1| cytochrome c biogenesis protein transmembrane region [Arthrobacter chlorophenolicus A6] Length=321 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 119/210 (57%), Gaps = 16/210 (7%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMAL--GF 63 +GLAF G++A +NPCGFAMLP YL + AGR PL A RA GMAL GF Sbjct 5 LGLAFLTGMLATVNPCGFAMLPTYLAYFIGSGPGAGRKRPLLAGLRA-----GMALSAGF 59 Query 64 LTVFGIFGALTISAATAVQRYLPYATVLIGLALI-----ALGGWLLLGRGLT-ALTPRSL 117 VF G L +V LP+A +IG ++ L GW L G GL R Sbjct 60 AAVFVTTGLLFAVGLRSVASALPWAAAVIGAVIVIAGLGMLAGWQLPGTGLNLNRFARKG 119 Query 118 GVRWAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLT 177 G + L +++GYG++YAVA+LSC++ LAV + GS+ G ++++ AY G + Sbjct 120 GGNGS---GLKAVFGYGVAYAVAALSCSLALLLAVVAQAVSTGSLAGLLSVFAAYALGSS 176 Query 178 LVVGVLAVAAATASSALADRLRRILPFVNR 207 +V+ +L++ AA A AL + +RR+LP+VNR Sbjct 177 VVLILLSLGAAVARDALVNHVRRLLPYVNR 206 >gi|309813297|ref|ZP_07707010.1| cytochrome C biogenesis protein transmembrane region [Dermacoccus sp. Ellin185] gi|308432742|gb|EFP56661.1| cytochrome C biogenesis protein transmembrane region [Dermacoccus sp. Ellin185] Length=306 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/222 (35%), Positives = 124/222 (56%), Gaps = 9/222 (4%) Query 5 LIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFL 64 L+ LAFAAG++A +NPCGFA+LPA++ + D+A + P+ + RA A + + +GF Sbjct 4 LLALAFAAGMIAPVNPCGFALLPAWITHAL--GDAASSSAPVRLL-RALRAGLALTIGFA 60 Query 65 TVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPT 124 + G + A + + P + +G+ L+ LGG +L GR ++ P G+ Sbjct 61 GTLALAGVAVSAGARGLIQAAPALGLAVGILLVLLGGAMLAGRSMSLRLP---GIPGRAI 117 Query 125 VRLGS---MYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVG 181 RL S M +G+ YA ASLSCT G LAV S VG + ++ Y AG V+ Sbjct 118 ERLPSAVRMVVFGVGYAAASLSCTFGVLLAVIAQAQATASFVGLLLVFAIYAAGSATVLL 177 Query 182 VLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 ++AV AA A S L+ R+ + FV +++ A+L++ G+Y+ +Y Sbjct 178 LVAVVAAVAGSVLSRRIAALTRFVPKVTAAVLILTGVYLAWY 219 >gi|221633464|ref|YP_002522689.1| putative integral membrane transporter [Thermomicrobium roseum DSM 5159] gi|221156419|gb|ACM05546.1| putative integral membrane transporter [Thermomicrobium roseum DSM 5159] Length=244 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFLT 65 G AF AG++AA+NPCGFAMLPAYL L + D + P + +GRA ++ GF T Sbjct 21 FGYAFGAGMLAAVNPCGFAMLPAYLALYLGLDDDRSASAP-ARLGRALLVGSAVSFGFST 79 Query 66 VFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRW---- 121 +F + G + + + +P+ + IG+ LI +G + GR + L R Sbjct 80 LFVLVGLVVSLGGSFLFPVMPWVGMSIGIVLILMGIAMFSGRVIAPTQFERLADRLMRRG 139 Query 122 APTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVG 181 +VR + Y +G++Y +ASLSCT F+ G+ L G + Y G+ V+ Sbjct 140 ERSVR--AFYLFGLAYGLASLSCTFPVFMIAAGSALLSGDLSRGTLQLATYSLGMASVIV 197 Query 182 VLAVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 L VA A L LRR +P+V + ALLV G+ + Y Sbjct 198 ALTVALAFLRLGLVRVLRRAIPYVQSAAAALLVFAGMTILLY 239 >gi|51246951|ref|YP_066835.1| hypothetical protein DP3099 [Desulfotalea psychrophila LSv54] gi|50877988|emb|CAG37828.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54] Length=252 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/233 (32%), Positives = 120/233 (52%), Gaps = 4/233 (1%) Query 6 IGLAFAAGLVAALNPCGFAMLPAYLLLVV-YGQDSAGRTGPLSAVGRAAAATVGMALGFL 64 +G AF AG+V+A+NPCGF MLP Y+ L + +D L + RA + + LGF Sbjct 20 VGYAFGAGMVSAVNPCGFVMLPVYVSLYIGATEDDYASRSFLYKILRAIGVALVLTLGFA 79 Query 65 TVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPT 124 ++FG+ G + + + P+ +++G L+ LG WLLLG+ ++ L R Sbjct 80 SLFGVVGFAIAYGGSYLLSFTPWIALIVGFLLMFLGLWLLLGKHVSLPFMLRLANRIGDP 139 Query 125 VRLGSM--YGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGV 182 ++ + Y +G++Y AS SCT+ FLAV + ++ G+ A ++ Y+ G+ V+ Sbjct 140 RKISVLGFYLFGVAYGAASTSCTLPIFLAVVMNSVATDNLAGAFAQFIIYICGVFFVLAS 199 Query 183 LAVAAATASS-ALADRLRRILPFVNRISGALLVVVGLYVGYYGLYELRLIAGV 234 L + A+ RR+ P+V IS L++ G Y+ YY L L A V Sbjct 200 LTMGMVVLKQGAMEKFFRRVFPYVQTISALFLLIAGGYIIYYWLTSGLLFANV 252 >gi|27467001|ref|NP_763638.1| hypothetical protein SE0083 [Staphylococcus epidermidis ATCC 12228] gi|257090966|ref|ZP_05585327.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|304380000|ref|ZP_07362727.1| cytochrome C biogenesis protein transmembrane protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] 7 more sequence titles Length=226 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/217 (31%), Positives = 113/217 (53%), Gaps = 15/217 (6%) Query 11 AAGLVAALNPCGFAMLPAYLLLVVYGQ--DSAGRTGPLSAVGRAAAATVGMALGFLTVFG 68 AG+VAA NPCG A+LP+Y+ ++ G+ D + R +G A T G FLT+F Sbjct 10 TAGMVAAFNPCGIALLPSYISYLIGGETKDHSFRYAIFKGLGLGGAMTTG----FLTIFV 65 Query 69 IFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLG 128 + G L +A+ P ++++G+ + LG +L G+ L P +G + V+ G Sbjct 66 LAGLLIGGLGSALTGIFPILSLVMGILIALLGLGMLFGKHL----PIKIG---SFQVKPG 118 Query 129 --SMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVA 186 S+Y YGI+YAV SL CT+ F+ V A L SV + ++ Y G+ +VV + + Sbjct 119 KWSIYFYGIAYAVTSLGCTLPAFMLVVSASLNDNSVTAVIIKFIIYSLGMGIVVTAITMV 178 Query 187 AATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 + + + L + + +I+ ++ + GLY+ YY Sbjct 179 SLISRQLVQKFLHNYMGSIQKIAAVVIFLSGLYMAYY 215 >gi|304388038|gb|ADM29139.1| Transporter [Staphylococcus aureus] Length=237 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/217 (31%), Positives = 113/217 (53%), Gaps = 15/217 (6%) Query 11 AAGLVAALNPCGFAMLPAYLLLVVYGQ--DSAGRTGPLSAVGRAAAATVGMALGFLTVFG 68 AG+VAA NPCG A+LP+Y+ ++ G+ D + R +G A T G FLT+F Sbjct 21 TAGMVAAFNPCGIALLPSYISYLIGGETKDHSFRYAIFKGLGLGGAMTTG----FLTIFV 76 Query 69 IFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLG 128 + G L +A+ P ++++G+ + LG +L G+ L P +G + V+ G Sbjct 77 LAGLLIGGLGSALTGIFPILSLVMGILIALLGLGMLFGKHL----PIKIG---SFQVKPG 129 Query 129 --SMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVA 186 S+Y YGI+YAV SL CT+ F+ V A L SV + ++ Y G+ +VV + + Sbjct 130 KWSIYFYGIAYAVTSLGCTLPAFMLVVSASLNDNSVTAVIIKFIIYSFGMGIVVTAITMV 189 Query 187 AATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 + + + L + + +I+ ++ + GLY+ YY Sbjct 190 SLISRQLVQKFLHNYMGSIQKIAAVVIFLSGLYMAYY 226 >gi|14021020|dbj|BAB47644.1| orf4 [Staphylococcus aureus] Length=226 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/217 (31%), Positives = 113/217 (53%), Gaps = 15/217 (6%) Query 11 AAGLVAALNPCGFAMLPAYLLLVVYGQ--DSAGRTGPLSAVGRAAAATVGMALGFLTVFG 68 AG+VAA NPCG A+LP+Y+ ++ G+ D + R +G A T G FLT+F Sbjct 10 TAGMVAAFNPCGIALLPSYISYLIGGETKDHSFRYAIFKGLGLGGAMTTG----FLTIFV 65 Query 69 IFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLG 128 + G L +A+ P ++++G+ + LG +L G+ L P +G + V+ G Sbjct 66 LAGLLIGGLGSALTGIFPILSLVMGILIALLGLGMLFGKHL----PIKIG---SFQVKPG 118 Query 129 --SMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVA 186 S+Y YGI+YAV SL CT+ F+ V A L SV + ++ Y G+ +VV + + Sbjct 119 KWSIYFYGIAYAVTSLGCTLPAFMLVVSASLNDNSVTAVIIKFIIYSLGMGIVVTAITMV 178 Query 187 AATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 + + + L + + +I+ ++ + GLY+ YY Sbjct 179 SLISRQLVQKFLHNYMGSIQKIAAVVIFLSGLYMTYY 215 >gi|145223804|ref|YP_001134482.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium gilvum PYR-GCK] gi|315444098|ref|YP_004076977.1| cytochrome C biogenesis protein [Mycobacterium sp. Spyr1] gi|145216290|gb|ABP45694.1| cytochrome c biogenesis protein, transmembrane region [Mycobacterium gilvum PYR-GCK] gi|315262401|gb|ADT99142.1| cytochrome c biogenesis protein [Mycobacterium sp. Spyr1] Length=282 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/222 (33%), Positives = 112/222 (51%), Gaps = 6/222 (2%) Query 5 LIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVGRAAAATVGMALGFL 64 L+ LAF AG++A +NPCGFA+LPA++ + + G L + RA + +GF Sbjct 3 LLALAFTAGMLAPVNPCGFALLPAWITGTI---ATGGTDAVLVRLARALRTGAVLTIGFT 59 Query 65 TVFGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTP-RSLGVRWAP 123 + G + A + P+ + IGL L LGG++L GR + P R+ +P Sbjct 60 GTLTLAGIAISAGARTLVTAAPWLGITIGLTLAILGGFMLTGRTIGLRMPARTRHRPDSP 119 Query 124 TVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVL 183 T G + GI YA+ASLSCT G LAV G +A++ AY AG ++ ++ Sbjct 120 TA--GGVLAAGIGYALASLSCTFGVLLAVIAQAQATSGWGGLLAVFTAYTAGAATILMLV 177 Query 184 AVAAATASSALADRLRRILPFVNRISGALLVVVGLYVGYYGL 225 +V A A +AL L + R++ +L+ G Y+ +Y L Sbjct 178 SVGTAIAGTALTRHLGILARHGTRVTAVVLIATGAYLAWYWL 219 >gi|253315940|ref|ZP_04839153.1| hypothetical protein SauraC_07287 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257428640|ref|ZP_05605037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431586|ref|ZP_05607957.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] 38 more sequence titles Length=226 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/217 (31%), Positives = 112/217 (52%), Gaps = 15/217 (6%) Query 11 AAGLVAALNPCGFAMLPAYLLLVVYGQ--DSAGRTGPLSAVGRAAAATVGMALGFLTVFG 68 AG+VAA NPCG A+LP+Y+ ++ G+ D + R +G A T G FLT+F Sbjct 10 TAGMVAAFNPCGIALLPSYISYLIGGETKDHSFRYAIFKGLGLGGAMTTG----FLTIFV 65 Query 69 IFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRGLTALTPRSLGVRWAPTVRLG 128 + G L +A+ P ++++G+ + LG +L G+ L P +G + V+ G Sbjct 66 LAGLLIGGLGSALTGIFPILSLVMGILIALLGLGMLFGKHL----PIKIG---SFQVKPG 118 Query 129 --SMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVA 186 S+Y YGI+YAV SL CT+ F+ V A L SV + ++ Y G+ +VV + + Sbjct 119 KWSIYFYGIAYAVTSLGCTLPAFMLVVSASLNDNSVTAVIIKFIIYSLGMGIVVTAITMV 178 Query 187 AATASSALADRLRRILPFVNRISGALLVVVGLYVGYY 223 + + + L + + +I+ ++ + LY+ YY Sbjct 179 SLISRQLVQKFLHNYMGSIQKIAAVVIFLSVLYMAYY 215 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 464609342096 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40