BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2884
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
gi|15610021|ref|NP_217400.1| transcriptional regulatory protein ... 509 2e-142
gi|340627875|ref|YP_004746327.1| putative transcriptional regula... 505 2e-141
gi|323718494|gb|EGB27665.1| transcriptional regulator [Mycobacte... 464 4e-129
gi|240171724|ref|ZP_04750383.1| putative transcriptional regulat... 283 1e-74
gi|342858269|ref|ZP_08714924.1| hypothetical protein MCOL_05326 ... 282 3e-74
gi|41409046|ref|NP_961882.1| hypothetical protein MAP2948 [Mycob... 276 3e-72
gi|336459065|gb|EGO38015.1| response regulator with CheY-like re... 275 4e-72
gi|183981838|ref|YP_001850129.1| transcriptional regulatory prot... 275 5e-72
gi|118465229|ref|YP_882909.1| GlnR family transcriptional regula... 273 1e-71
gi|254819041|ref|ZP_05224042.1| hypothetical protein MintA_03896... 261 1e-67
gi|296171519|ref|ZP_06852783.1| transcriptional regulator [Mycob... 259 2e-67
gi|118617643|ref|YP_905975.1| transcriptional regulatory protein... 255 5e-66
gi|333991750|ref|YP_004524364.1| transcriptional regulator [Myco... 214 1e-53
gi|333918420|ref|YP_004492001.1| putative transcriptional regula... 209 4e-52
gi|54022565|ref|YP_116807.1| putative transcriptional regulator ... 209 4e-52
gi|312138323|ref|YP_004005659.1| two component system response r... 208 5e-52
gi|108801488|ref|YP_641685.1| response regulator receiver protei... 207 1e-51
gi|315442681|ref|YP_004075560.1| response regulator with CheY-li... 206 2e-51
gi|296166424|ref|ZP_06848856.1| transcriptional regulator [Mycob... 203 2e-50
gi|256380805|ref|YP_003104465.1| winged helix family two compone... 202 3e-50
gi|118472805|ref|YP_890012.1| transcriptional regulatory protein... 202 5e-50
gi|342860295|ref|ZP_08716946.1| transcriptional regulator [Mycob... 201 8e-50
gi|240171892|ref|ZP_04750551.1| transcriptional regulatory prote... 201 8e-50
gi|41406747|ref|NP_959583.1| hypothetical protein MAP0649 [Mycob... 201 8e-50
gi|254821033|ref|ZP_05226034.1| transcriptional regulatory prote... 201 9e-50
gi|145222242|ref|YP_001132920.1| response regulator receiver pro... 201 1e-49
gi|333992181|ref|YP_004524795.1| transcriptional regulator [Myco... 201 1e-49
gi|120406045|ref|YP_955874.1| response regulator receiver protei... 199 3e-49
gi|226308293|ref|YP_002768253.1| transcriptional regulator [Rhod... 198 6e-49
gi|169627845|ref|YP_001701494.1| transcriptional regulatory prot... 198 7e-49
gi|226364352|ref|YP_002782134.1| transcriptional regulator [Rhod... 198 8e-49
gi|111021831|ref|YP_704803.1| transcriptional regulator [Rhodoco... 198 8e-49
gi|298524308|ref|ZP_07011717.1| transcriptional regulatory prote... 197 1e-48
gi|159036005|ref|YP_001535258.1| winged helix family two compone... 196 3e-48
gi|238061322|ref|ZP_04606031.1| two-component system response re... 196 3e-48
gi|302870164|ref|YP_003838801.1| transcriptional regulator domai... 195 4e-48
gi|330470371|ref|YP_004408114.1| winged helix family two compone... 194 1e-47
gi|145592859|ref|YP_001157156.1| winged helix family two compone... 193 2e-47
gi|183984833|ref|YP_001853124.1| transcriptional regulatory prot... 192 3e-47
gi|262203794|ref|YP_003275002.1| transcriptional regulator [Gord... 191 8e-47
gi|291452321|ref|ZP_06591711.1| transcriptional regulatory prote... 191 9e-47
gi|345001134|ref|YP_004803988.1| putative winged helix family tw... 191 1e-46
gi|118616284|ref|YP_904616.1| transcriptional regulatory protein... 190 1e-46
gi|134103524|ref|YP_001109185.1| transcriptional regulator [Sacc... 190 2e-46
gi|302543581|ref|ZP_07295923.1| transcriptional regulatory prote... 189 3e-46
gi|31792006|ref|NP_854499.1| transcriptional regulatory protein ... 189 3e-46
gi|15607958|ref|NP_215333.1| transcriptional regulatory protein ... 189 5e-46
gi|296141220|ref|YP_003648463.1| winged helix family two compone... 189 5e-46
gi|340625833|ref|YP_004744285.1| transcriptional regulatory prot... 188 6e-46
gi|295837511|ref|ZP_06824444.1| transcriptional regulatory prote... 188 6e-46
>gi|15610021|ref|NP_217400.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15842426|ref|NP_337463.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551]
gi|31794060|ref|NP_856553.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=252
Score = 509 bits (1311), Expect = 2e-142, Method: Compositional matrix adjust.
Identities = 252/252 (100%), Positives = 252/252 (100%), Gaps = 0/252 (0%)
Query 1 MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGAD 60
MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGAD
Sbjct 1 MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGAD 60
Query 61 ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA 120
ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA
Sbjct 61 ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA 120
Query 121 ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG 180
ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG
Sbjct 121 ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG 180
Query 181 RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR
Sbjct 181 RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
Query 241 WIISESILNRCK 252
WIISESILNRCK
Sbjct 241 WIISESILNRCK 252
>gi|340627875|ref|YP_004746327.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340006065|emb|CCC45236.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=252
Score = 505 bits (1300), Expect = 2e-141, Method: Compositional matrix adjust.
Identities = 250/252 (99%), Positives = 250/252 (99%), Gaps = 0/252 (0%)
Query 1 MPTGPTTGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGAD 60
MPTGPT GKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKG D
Sbjct 1 MPTGPTRGKWHPHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGVD 60
Query 61 ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA 120
ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA
Sbjct 61 ADVAIIDARADLAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGA 120
Query 121 ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG 180
ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG
Sbjct 121 ELQARLRLAITRRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAG 180
Query 181 RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR
Sbjct 181 RAFTRTRLMREVWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
Query 241 WIISESILNRCK 252
WIISESILNRCK
Sbjct 241 WIISESILNRCK 252
>gi|323718494|gb|EGB27665.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
gi|339295722|gb|AEJ47833.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5079]
gi|339299338|gb|AEJ51448.1| transcriptional regulatory protein [Mycobacterium tuberculosis
CCDC5180]
Length=233
Score = 464 bits (1195), Expect = 4e-129, Method: Compositional matrix adjust.
Identities = 232/233 (99%), Positives = 233/233 (100%), Gaps = 0/233 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+EVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC
Sbjct 1 MEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG
Sbjct 61 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 120
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG
Sbjct 121 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 180
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILNRCK 252
RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILNRCK
Sbjct 181 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILNRCK 233
>gi|240171724|ref|ZP_04750383.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=240
Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/224 (74%), Positives = 188/224 (84%), Gaps = 0/224 (0%)
Query 22 VLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRR 81
+LL+++EAD S LP LESFA+SV+RAPLDD A + ADVA+IDAR DLAAARR CRR
Sbjct 1 MLLISNEADFPSVLPRLESFARSVRRAPLDDHHAWQLDGADVAMIDARTDLAAARRACRR 60
Query 82 LTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGTL 141
LT PALAVVAVVA A+F+ VD DW FDDVLL AA AEL+ARLRLAITRRR L GTL
Sbjct 61 LTADVPALAVVAVVALADFIEVDVDWHFDDVLLEAADAAELRARLRLAITRRRHALEGTL 120
Query 142 QFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRI 201
+FGDLVLHP SYTASLG ++LGLT TEFKL+ FLVQHAGRAFTRTRLM EVWGY+C G++
Sbjct 121 EFGDLVLHPDSYTASLGGKNLGLTATEFKLLAFLVQHAGRAFTRTRLMHEVWGYDCAGQV 180
Query 202 RTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISE 245
RTVDVHVRRLRAKLGAE+ ++++TVR VGY A TPPQPRWI+ E
Sbjct 181 RTVDVHVRRLRAKLGAEYAALVETVRSVGYRAATPPQPRWIVRE 224
>gi|342858269|ref|ZP_08714924.1| hypothetical protein MCOL_05326 [Mycobacterium colombiense CECT
3035]
gi|342133973|gb|EGT87153.1| hypothetical protein MCOL_05326 [Mycobacterium colombiense CECT
3035]
Length=250
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 140/230 (61%), Positives = 176/230 (77%), Gaps = 0/230 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
++V++LTDE D ESALP+L +FAQ ++R L A AD+AIIDAR+++ A+ V
Sbjct 1 MDVVVLTDEDDFESALPDLATFAQPMRRITLAAEPDGHFATADIAIIDARSNIEVAQAVS 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RLT P AVVA+VAPA+ AVD D FDDV+L G ELQAR+RLAI RRR + G
Sbjct 61 HRLTADNPGTAVVALVAPADCAAVDVDCNFDDVMLPGTGAEELQARMRLAIGRRRGAVDG 120
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
TL+FGDL LHPAS+TA+L DLGLTLTEFKL+NFLVQHAG+AFTRTRLM+E WG++ G
Sbjct 121 TLRFGDLQLHPASFTATLDGNDLGLTLTEFKLLNFLVQHAGQAFTRTRLMQEAWGHDSTG 180
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILN 249
++RTVDVH+RRLRAKLG H+ ++DTVRGVGY A TPPQP W++++S L
Sbjct 181 KVRTVDVHIRRLRAKLGTRHQFLVDTVRGVGYRAATPPQPEWVVADSALT 230
>gi|41409046|ref|NP_961882.1| hypothetical protein MAP2948 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41397405|gb|AAS05265.1| hypothetical protein MAP_2948 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=253
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/227 (65%), Positives = 175/227 (78%), Gaps = 0/227 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
L+V++LT+E D ESALP+L FA+ +RA L G + ADVAIIDAR+++AAA+ V
Sbjct 25 LDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAAQAVS 84
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RLT PA AVVA+VAPA+ AVD D FDDV+L ELQARLRLAI RRR L G
Sbjct 85 HRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDG 144
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
TL+FGDL+LHPAS+TASL R+L LTLTEFKL+NFLVQHAG+AFTRTRLM++ WGYE +G
Sbjct 145 TLKFGDLLLHPASFTASLDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNG 204
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
R RTVDVH+RRLRAKLG H+S++ TVRGVGY A TPPQP WI+
Sbjct 205 RARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPTPPQPEWIVGHQ 251
>gi|336459065|gb|EGO38015.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=231
Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/227 (65%), Positives = 175/227 (78%), Gaps = 0/227 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
L+V++LT+E D ESALP+L FA+ +RA L G + ADVAIIDAR+++AAA+ V
Sbjct 3 LDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAAQAVS 62
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RLT PA AVVA+VAPA+ AVD D FDDV+L ELQARLRLAI RRR L G
Sbjct 63 HRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDG 122
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
TL+FGDL+LHPAS+TASL R+L LTLTEFKL+NFLVQHAG+AFTRTRLM++ WGYE +G
Sbjct 123 TLKFGDLLLHPASFTASLDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNG 182
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
R RTVDVH+RRLRAKLG H+S++ TVRGVGY A TPPQP WI+
Sbjct 183 RARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPTPPQPEWIVGHQ 229
>gi|183981838|ref|YP_001850129.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183175164|gb|ACC40274.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=266
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 158/238 (67%), Positives = 186/238 (79%), Gaps = 0/238 (0%)
Query 12 PHEVWRYLLEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARAD 71
P V R L VLLL++ AD ES LP L+SFA +Q A LD G A DVA+IDAR+D
Sbjct 9 PRGVGRCFLRVLLLSNAADFESTLPTLKSFASVIQHARLDAAGPPDWAGPDVAMIDARSD 68
Query 72 LAAARRVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAIT 131
LA AR CRRLT +AP++AVVAVVA A+FV +D DW FDDVLL AAG AEL+ARLRLA+T
Sbjct 69 LATARSTCRRLTANAPSVAVVAVVAAADFVDIDIDWHFDDVLLAAAGAAELRARLRLAVT 128
Query 132 RRRSTLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMRE 191
RRR GTL+FGDL +HP S T ++ LGLTLTEF+L +FLV+HAG+AFTRTRLM E
Sbjct 129 RRRRARKGTLEFGDLAIHPDSCTVTVAGEALGLTLTEFRLFHFLVRHAGQAFTRTRLMHE 188
Query 192 VWGYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILN 249
VWGY+C+GR RTVDVHVRRLRAKLGA+HESM+DTVRGVGYMAVTPP PRW + +L+
Sbjct 189 VWGYDCNGRARTVDVHVRRLRAKLGADHESMVDTVRGVGYMAVTPPLPRWTARQPVLS 246
>gi|118465229|ref|YP_882909.1| GlnR family transcriptional regulator [Mycobacterium avium 104]
gi|254776163|ref|ZP_05217679.1| transcriptional regulator GlnR [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118166516|gb|ABK67413.1| transcriptional regulator GlnR [Mycobacterium avium 104]
Length=231
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/227 (64%), Positives = 174/227 (77%), Gaps = 0/227 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
L+V++LT+E D ESALP+L FA+ +RA L G + ADVAIIDAR+++AAA+ V
Sbjct 3 LDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAAQAVS 62
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RLT PA AVVA+VAPA+ AVD D FDDV+L ELQARLRLAI RRR L G
Sbjct 63 HRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDG 122
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
TL+FGDL+LHPAS+TASL R+L LTLTEFKL+NFLVQHAG+AFTRTRLM++ WGYE +G
Sbjct 123 TLKFGDLLLHPASFTASLDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNG 182
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
R RTVDVH+RRLRAKLG H+S++ TVRGVGY TPPQP WI+
Sbjct 183 RARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRVPTPPQPEWIVGHQ 229
>gi|254819041|ref|ZP_05224042.1| hypothetical protein MintA_03896 [Mycobacterium intracellulare
ATCC 13950]
Length=234
Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/230 (60%), Positives = 168/230 (74%), Gaps = 1/230 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+++++LTDEAD ESALP+L +FA R L A ADVAI+DAR+++ AA+ V
Sbjct 1 MDIVVLTDEADFESALPDLTTFALPA-RVALTAHTDGHCATADVAIVDARSNMPAAQAVS 59
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RRL PA AVVA+V PA+ AVD D FDDV+L G EL+ARLRLA+ RRR T G
Sbjct 60 RRLAAQNPATAVVALVRPADCAAVDTDGNFDDVMLPGTGADELRARLRLAVGRRRGTADG 119
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
L+FGDL LHPAS+TASL DL LTLTEF+L++FLV HAG+AFTRTRLMRE GY+ +
Sbjct 120 ILKFGDLRLHPASFTASLDGHDLTLTLTEFRLLSFLVLHAGQAFTRTRLMREACGYDSNS 179
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILN 249
R RTVDVH+RRLRAKLG HE MI TVRGVGY A TPPQP W++++ L
Sbjct 180 RARTVDVHIRRLRAKLGTRHEFMIGTVRGVGYRAPTPPQPEWVLADPALT 229
>gi|296171519|ref|ZP_06852783.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894081|gb|EFG73842.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=264
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/227 (64%), Positives = 173/227 (77%), Gaps = 0/227 (0%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
L+VL+LTD D + ALP L FA+ ++RAPL D A A VAIIDAR D AAAR C
Sbjct 19 LDVLVLTDADDFDRALPLLTPFARIMRRAPLTDDLRAPADSAHVAIIDARRDPAAARAAC 78
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG 139
RRL ++APA AVVA+VAPA+ V D DW DDV+ +LQ RLR AI +RR+ + G
Sbjct 79 RRLASAAPATAVVALVAPADEVVTDSDWNIDDVVAPGTNPDDLQDRLRRAIVQRRNAING 138
Query 140 TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHG 199
+L+FG L+LHP S+ ASL DLGLTLTEFKL++FLVQHAGR FTRTRLM E WGY+C+G
Sbjct 139 SLRFGALLLHPTSFAASLEGEDLGLTLTEFKLLSFLVQHAGRPFTRTRLMHEAWGYDCNG 198
Query 200 RIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
R+R+VDVHVRRLRAKLG+ H+SM+DTVRGVGYMA TPP P WI+SES
Sbjct 199 RVRSVDVHVRRLRAKLGSRHQSMVDTVRGVGYMAATPPHPEWIVSES 245
>gi|118617643|ref|YP_905975.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118569753|gb|ABL04504.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=246
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/226 (65%), Positives = 175/226 (78%), Gaps = 0/226 (0%)
Query 24 LLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLT 83
+L++ AD ES LP L+SFA +Q A LD A DVA+IDAR+DL AR CRRLT
Sbjct 1 MLSNAADFESTLPTLKSFASVIQHARLDAADPPDWAGPDVAMIDARSDLTTARSACRRLT 60
Query 84 TSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGTLQF 143
+AP++AVVAVVA A+FV +D DW FDDVLL AAG AEL+ARLRLA+ RRR GTL+F
Sbjct 61 ANAPSVAVVAVVAAADFVDIDIDWHFDDVLLAAAGAAELRARLRLAVMRRRRARKGTLEF 120
Query 144 GDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRT 203
GDL +HP S T ++ LGLTLTEF+L +FLV+HAG+AFT TRLM EVWGY+C+GR RT
Sbjct 121 GDLAIHPDSCTVTVAGEALGLTLTEFRLFHFLVRHAGQAFTHTRLMHEVWGYDCNGRART 180
Query 204 VDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILN 249
VDVHVRRLRAKLGA+HESM+DT RGVGYMAVTPP PRW + +L+
Sbjct 181 VDVHVRRLRAKLGADHESMVDTERGVGYMAVTPPPPRWTARQPVLS 226
>gi|333991750|ref|YP_004524364.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333487718|gb|AEF37110.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=223
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/226 (59%), Positives = 160/226 (71%), Gaps = 5/226 (2%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGA-AKGADADVAIIDARADLAAARRV 78
+E+LLLTD + E L L F SV RAPL A +GA A ++D +LA AR
Sbjct 1 MEILLLTDRDEFEQTLSALRVFGHSVGRAPLAVTRADCRGAAA--VLVDGCTELATARET 58
Query 79 CRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA 138
CRRL AP+ AV+AVVA +FVAVD DW DDVL+ AG AE ARLRLA+ RRR +
Sbjct 59 CRRLCAWAPSAAVLAVVAAEDFVAVDIDWQVDDVLVTTAGPAEAHARLRLALARRRESEQ 118
Query 139 GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECH 198
+QFGDL++HP SY+ SL R+L LTLTEFKL+N+LV+HAG AFTRTRL+ EVWG E
Sbjct 119 SAVQFGDLIIHPDSYSVSLSGRELDLTLTEFKLLNYLVRHAGHAFTRTRLLHEVWGGE-- 176
Query 199 GRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIIS 244
G R VDVHV+RLRAKLGA+HES++DTVRGVGYM PQP+W I+
Sbjct 177 GSRRKVDVHVQRLRAKLGADHESIVDTVRGVGYMTPESPQPQWAIA 222
>gi|333918420|ref|YP_004492001.1| putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480641|gb|AEF39201.1| Putative transcriptional regulator [Amycolicicoccus subflavus
DQS3-9A1]
Length=248
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/221 (53%), Positives = 145/221 (66%), Gaps = 4/221 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + + ES LP L +V+ AP D A ADVA++DAR DLA+AR +C
Sbjct 1 MELLLLTADPNPESVLPSLALLPHNVRPAPADVSSLLDAAGADVAVVDARTDLASARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L + A+ VVAV+ VAV DW DD+LL G AEL ARLRL + R
Sbjct 61 RILANTGAAVPVVAVLTEGGLVAVSPDWGIDDILLPGTGPAELDARLRLLVGRTTVQTED 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
AGT+ G+L++ +YTA L + L LT EF+L+ +LVQHAGR FTR +L++EVWGY
Sbjct 121 DDAGTVTLGELLIDEGTYTARLRGKPLDLTYKEFELLKYLVQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
+ G RTVDVHVRRLRAKLGAEHE++I TVR VGY AV P
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGAEHEALIGTVRNVGYKAVRP 221
>gi|54022565|ref|YP_116807.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54014073|dbj|BAD55443.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length=252
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/221 (51%), Positives = 146/221 (67%), Gaps = 4/221 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + + ES LP L A +V+ AP + + ADVA++DAR DLAAAR +C
Sbjct 1 MELLLLTSDPNPESVLPSLALLAHTVRPAPTEVASLLEAGTADVALVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L ++ ++ VVAV+ VAV+ DW DD+LL G AEL ARLRL + R +
Sbjct 61 RLLGSTGSSVPVVAVLTEGGLVAVNADWGLDDILLPGTGPAELDARLRLLVGRNGGVASP 120
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 ENTGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
+ G RTVDVHVRRLRAKLG+E+ES+I TVR VGY AV P
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRP 221
>gi|312138323|ref|YP_004005659.1| two component system response regulator [Rhodococcus equi 103S]
gi|325674760|ref|ZP_08154447.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|311887662|emb|CBH46974.1| two component system response regulator [Rhodococcus equi 103S]
gi|325554346|gb|EGD24021.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
Length=253
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/221 (51%), Positives = 148/221 (67%), Gaps = 4/221 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + + ++ LP L + SV+ AP + + ADVA++DAR+DLAAAR +C
Sbjct 1 MELLLLTSDPNPDTVLPSLALLSHSVRPAPTEVSSLLEAGAADVALVDARSDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L ++ A+ VVAV+ VAV+ DW DD+LL + G AEL ARLRL + R +
Sbjct 61 RLLGSTGSAIPVVAVLTEGGLVAVNSDWGLDDILLPSTGPAELDARLRLLVGRNGGVASP 120
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 EATGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
+ G RTVDVHVRRLRAKLG+E+ES+I TVR VGY AV P
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRP 221
>gi|108801488|ref|YP_641685.1| response regulator receiver protein [Mycobacterium sp. MCS]
gi|119870641|ref|YP_940593.1| response regulator receiver protein [Mycobacterium sp. KMS]
gi|126437473|ref|YP_001073164.1| response regulator receiver protein [Mycobacterium sp. JLS]
gi|108771907|gb|ABG10629.1| response regulator receiver protein [Mycobacterium sp. MCS]
gi|119696730|gb|ABL93803.1| response regulator receiver protein [Mycobacterium sp. KMS]
gi|126237273|gb|ABO00674.1| response regulator receiver protein [Mycobacterium sp. JLS]
Length=257
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/234 (50%), Positives = 151/234 (65%), Gaps = 4/234 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+++LLLT + ES LP L A +V+ AP + + ADVAI+DAR DLAAAR +C
Sbjct 1 MDLLLLTVDPHPESVLPSLSLLAHNVRAAPTEVSSLLEAGTADVAIVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L T+ ++ VVAVV VAV+ +W D++LL G AE+ ARLRL + RR
Sbjct 61 RLLGTTGTSVPVVAVVTEGGLVAVNHEWGLDEILLPGTGPAEIDARLRLLVGRRGGVANQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
AG + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 ENAGKISLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILN 249
+ G RTVDVHVRRLRAKLG E+ES+I TVR VGY AV P + R E+ L+
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRPARGRPPAPEAELS 234
>gi|315442681|ref|YP_004075560.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|315260984|gb|ADT97725.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length=263
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/231 (50%), Positives = 149/231 (65%), Gaps = 4/231 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+++LLLT + ES LP L A +V+ AP + + ADVAI+DAR DLAAAR +C
Sbjct 1 MDLLLLTVDPHPESVLPSLSLLAHTVRTAPTEVSSLLEAGTADVAIVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L T+ ++ VVAVV VAV+ +W D++LL + G AE+ ARLRL + RR
Sbjct 61 RLLGTTGTSVPVVAVVNEGGLVAVNVEWGLDEILLPSTGPAEIDARLRLLVGRRGGMANQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 ENLGKISLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
+ G RTVDVHVRRLRAKLG E+ES+I TVR VGY AV P + R ES
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRPARGRPPAPES 231
>gi|296166424|ref|ZP_06848856.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898185|gb|EFG77759.1| transcriptional regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=255
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/230 (48%), Positives = 147/230 (64%), Gaps = 4/230 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT E + LP L +V+ AP + + AD ++DAR DL++AR +C
Sbjct 1 MELLLLTSELHPDPVLPSLSLLPHTVRTAPAEPSSLLEAGTADAVLVDARTDLSSARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L+T+ ++ V+AVV+ VAV DW D++LL + G AE+ ARLRL I RR
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVIGRRGGLADQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
AG + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY
Sbjct 121 ESAGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISE 245
+ G RTVDVHVRRLRAKLG E+E++I TVR VGY AV P + R I+E
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGRAPIAE 230
>gi|256380805|ref|YP_003104465.1| winged helix family two component transcriptional regulator [Actinosynnema
mirum DSM 43827]
gi|255925108|gb|ACU40619.1| putative two component transcriptional regulator, winged helix
family [Actinosynnema mirum DSM 43827]
Length=250
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/223 (50%), Positives = 145/223 (66%), Gaps = 3/223 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
++VLLLT + D E+ LP L V+ + + DV ++DAR DL AR +C
Sbjct 3 IDVLLLTTDPDPEAVLPALALLPHEVRPLRPEVSALLEAGPHDVVLVDARTDLVGARGLC 62
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR---RST 136
R L +S + VVA+V + VAV+ DW D++LL +G AE+ ARLRL +RR +S
Sbjct 63 RLLDSSGVDVPVVAIVTEGSLVAVNADWSVDEILLPTSGPAEVDARLRLVRSRRGAAQSG 122
Query 137 LAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYE 196
G+LQ G+LV+ A+YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY+
Sbjct 123 GDGSLQLGELVIDEATYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYD 182
Query 197 CHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQP 239
G RTVDVHVRRLRAKLG EHES+I TVR VGY V PP+P
Sbjct 183 FFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYKFVRPPRP 225
>gi|118472805|ref|YP_890012.1| transcriptional regulatory protein [Mycobacterium smegmatis str.
MC2 155]
gi|118174092|gb|ABK74988.1| transcriptional regulatory protein [Mycobacterium smegmatis str.
MC2 155]
Length=261
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/221 (50%), Positives = 145/221 (66%), Gaps = 4/221 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+++LLLT + ES LP L A +V+ AP + + ADVAI+DAR DLAAAR +C
Sbjct 1 MDLLLLTVDPHPESVLPSLSLLAHTVRTAPTEVSSLLETGSADVAIVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTL-- 137
R L T+ ++ VVAV+ VAV+ +W D++LL + G AE+ ARLRL + RR
Sbjct 61 RLLGTTGTSVPVVAVINEGGLVAVNHEWGLDEILLPSTGPAEIDARLRLLVGRRGGNANQ 120
Query 138 --AGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L + L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 ENVGKITLGELVIDEGTYTARLRGKPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
+ G RTVDVHVRRLRAKLG E+E++I TVR VGY AV P
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRP 221
>gi|342860295|ref|ZP_08716946.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
gi|342131950|gb|EGT85191.1| transcriptional regulator [Mycobacterium colombiense CECT 3035]
Length=257
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 109/230 (48%), Positives = 146/230 (64%), Gaps = 4/230 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT E + LP L +V+ AP + + AD I+DAR DL++AR +C
Sbjct 1 MELLLLTSELHPDPVLPSLSLLPHAVRTAPPEPSSLLEAGTADAVIVDARTDLSSARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L+T+ ++ V+AVV+ VAV DW D++LL G AE+ ARLRL + RR
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAVSSDWGLDEILLPTTGPAEVDARLRLVVGRRGGLADQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
AG + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY
Sbjct 121 ESAGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISE 245
+ G RTVDVHVRRLRAKLG E+E++I TVR VGY AV P + R ++E
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGRAPVAE 230
>gi|240171892|ref|ZP_04750551.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
12478]
Length=254
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 109/230 (48%), Positives = 146/230 (64%), Gaps = 4/230 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT E + LP L + +V+ AP + + +AD ++DAR DL+AAR +C
Sbjct 1 MELLLLTSELYPDPVLPSLSLLSHNVRTAPPEASSLLEAGNADAVLVDARNDLSAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L+T+ + V+AVV VAV DW D++LL + G AE+ ARLRL + RR
Sbjct 61 RLLSTAGRSAPVLAVVTEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGGLSDQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY
Sbjct 121 EGVGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISE 245
+ G RTVDVHVRRLRAKLG EHE++I TVR VGY AV P + R ++E
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRTAVAE 230
>gi|41406747|ref|NP_959583.1| hypothetical protein MAP0649 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118465464|ref|YP_880035.1| transcriptional regulator [Mycobacterium avium 104]
gi|254773700|ref|ZP_05215216.1| transcriptional regulatory protein [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395097|gb|AAS02966.1| hypothetical protein MAP_0649 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118166751|gb|ABK67648.1| transcriptional regulatory protein [Mycobacterium avium 104]
gi|336458335|gb|EGO37314.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding [Mycobacterium avium subsp. paratuberculosis
S397]
Length=260
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 109/225 (49%), Positives = 145/225 (65%), Gaps = 4/225 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT E + LP L A +V+ AP + + AD I+DAR DL++AR +C
Sbjct 1 MELLLLTPELHPDPVLPSLSLLAHTVRTAPPEPSSLLEAGTADAVIVDARTDLSSARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L+T+ ++ V+AVV+ VAV+ DW D++LL G AE+ ARLRL + RR
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAVNSDWGLDEILLPTTGPAEVDARLRLVVGRRGGLADQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
AG + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY
Sbjct 121 ESAGKVTLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
+ G RTVDVHVRRLRAKLG E+E++I TVR VGY AV P + R
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAVRPARGR 225
>gi|254821033|ref|ZP_05226034.1| transcriptional regulatory protein [Mycobacterium intracellulare
ATCC 13950]
Length=262
Score = 201 bits (511), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/231 (48%), Positives = 146/231 (64%), Gaps = 4/231 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT E + LP L V+ AP + + AD I+DAR DL++AR +C
Sbjct 1 MELLLLTSELHPDPVLPSLSLLPHPVRTAPPEPASLLEAGTADAVIVDARTDLSSARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L+T+ ++ V+AVV+ VA+ DW D++LL G AE+ ARLRL + RR
Sbjct 61 RLLSTAGRSVPVLAVVSEGGLVAISADWGLDEILLPTTGPAEIDARLRLVVGRRGGLADQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
AG + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY
Sbjct 121 ESAGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
+ G RTVDVHVRRLRAKLG+EHE++I TVR VGY AV P + R ++S
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEHEALIGTVRNVGYKAVRPARGRAPAADS 231
>gi|145222242|ref|YP_001132920.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
gi|145214728|gb|ABP44132.1| response regulator receiver protein [Mycobacterium gilvum PYR-GCK]
Length=278
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/219 (51%), Positives = 141/219 (65%), Gaps = 4/219 (1%)
Query 32 ESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTSAPALAV 91
ES LP L A +V+ AP + + ADVAI+DAR DLAAAR +CR L T+ ++ V
Sbjct 28 ESVLPSLSLLAHAVRTAPTEVSSLLEAGTADVAIVDARTDLAAARGLCRLLGTTGTSVPV 87
Query 92 VAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RSTLAGTLQFGDLV 147
VAVV VAV+ +W D++LL + G AE+ ARLRL + RR G + G+LV
Sbjct 88 VAVVNEGGLVAVNVEWGLDEILLPSTGPAEIDARLRLLVGRRGGMANQENLGKISLGELV 147
Query 148 LHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDVH 207
+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY+ G RTVDVH
Sbjct 148 IDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYDFFGGTRTVDVH 207
Query 208 VRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
VRRLRAKLG E+ES+I TVR VGY AV P + R ES
Sbjct 208 VRRLRAKLGPEYESLIGTVRNVGYKAVRPARGRPPAPES 246
>gi|333992181|ref|YP_004524795.1| transcriptional regulator [Mycobacterium sp. JDM601]
gi|333488149|gb|AEF37541.1| transcriptional regulatory protein [Mycobacterium sp. JDM601]
Length=260
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/221 (50%), Positives = 144/221 (66%), Gaps = 4/221 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + E LP L A +V+ AP + + A+V I+DAR DLA AR +C
Sbjct 1 MELLLLTADLHPEVVLPSLSLLAHTVRTAPPEVSALLEAGSAEVVIVDARTDLAGARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L+T+A ++ V+AVV VAV+ +W D++LL G AE+ ARLRL RR + A
Sbjct 61 RLLSTTAGSVPVIAVVTEGGLVAVNAEWGIDEILLPGTGPAEVDARLRLLTGRRAAPAAD 120
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ A+YTA L R L LT EF+L+ +L QH GR FTR +L++EVWGY
Sbjct 121 QASGQTKLGELVIDEATYTARLRGRPLDLTYKEFELLKYLTQHVGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
+ G RTVDVHVRRLRAKLG E+ES+I TVR VGY AV P
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYESLIGTVRNVGYKAVRP 221
>gi|120406045|ref|YP_955874.1| response regulator receiver protein [Mycobacterium vanbaalenii
PYR-1]
gi|119958863|gb|ABM15868.1| response regulator receiver protein [Mycobacterium vanbaalenii
PYR-1]
Length=267
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/219 (51%), Positives = 144/219 (66%), Gaps = 4/219 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+++LLLT + ES LP L A +V+ AP + + ADVAI+DAR DLAAAR +C
Sbjct 1 MDLLLLTVDPHPESVLPSLALLAHNVRTAPTEVSSLLEAGTADVAIVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----RS 135
R L T+ ++ VVAVV VAV+ +W D++LL + G AE+ ARLRL + RR
Sbjct 61 RLLGTTGTSVPVVAVVNEGGLVAVNVEWGLDEILLPSTGPAEIDARLRLLVGRRGGMANQ 120
Query 136 TLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 ENLGKISLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAV 234
+ G RTVDVHVRRLRAKLG E+E++I TVR VGY AV
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGPEYEALIGTVRNVGYKAV 219
>gi|226308293|ref|YP_002768253.1| transcriptional regulator [Rhodococcus erythropolis PR4]
gi|229488368|ref|ZP_04382234.1| transcriptional regulator [Rhodococcus erythropolis SK121]
gi|226187410|dbj|BAH35514.1| putative transcriptional regulator [Rhodococcus erythropolis
PR4]
gi|229323872|gb|EEN89627.1| transcriptional regulator [Rhodococcus erythropolis SK121]
Length=250
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/225 (50%), Positives = 148/225 (66%), Gaps = 4/225 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + + E+ LP L A SV+ AP + + + ADVA++DAR DLAAAR +C
Sbjct 1 MELLLLTSDPNPEAVLPALALLAHSVRPAPTEVSSLLEASSADVALVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L ++ A+ VVAV+ VAV+ DW DD+LL G AE+ ARLRL + R +
Sbjct 61 RLLGSTGSAVPVVAVLTEGGLVAVNADWGLDDILLPGTGPAEVDARLRLLVARSGGVASP 120
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 121 EASGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
+ G RTVDVHVRRLRAKLG E+ES+I TVR VGY AV P + +
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGTEYESLIGTVRNVGYKAVRPTRAK 225
>gi|169627845|ref|YP_001701494.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC
19977]
gi|169239812|emb|CAM60840.1| Probable transcriptional regulatory protein [Mycobacterium abscessus]
Length=268
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/219 (49%), Positives = 141/219 (65%), Gaps = 4/219 (1%)
Query 26 TDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTS 85
T + + + LP L A +V+ P + + ADVAI+DAR DLA+AR +CR L +
Sbjct 12 TADPNPDGVLPSLSLLAHTVRPVPSEVSSLLEAGAADVAIVDARTDLASARGLCRLLGAA 71
Query 86 APALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTL----AGTL 141
++ VVAVV + VAV+ DW DD+LL G AE+ ARLRL + RR + A +
Sbjct 72 GSSVPVVAVVNEGSLVAVNVDWGLDDILLPGTGPAEIDARLRLLVGRRAGAVNVENASKV 131
Query 142 QFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRI 201
G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY+ G
Sbjct 132 VLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGYDFFGGT 191
Query 202 RTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
RTVDVHVRRLRAKLG E+ES+I TVR VGY AV PP+ +
Sbjct 192 RTVDVHVRRLRAKLGGEYESLIGTVRNVGYKAVRPPRAK 230
>gi|226364352|ref|YP_002782134.1| transcriptional regulator [Rhodococcus opacus B4]
gi|226242841|dbj|BAH53189.1| putative transcriptional regulator [Rhodococcus opacus B4]
Length=256
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/225 (50%), Positives = 149/225 (67%), Gaps = 4/225 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + + E+ LP L A SV+ AP + + + AD+A++DAR DLAAAR +C
Sbjct 5 VELLLLTSDPNPEAVLPALALLAHSVRPAPTEVSSLLEASSADIALVDARTDLAAARGLC 64
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L ++ A+ VVAV+ VAV+ DW DD+LL G AE+ ARLRL + R +
Sbjct 65 RLLGSTGSAVPVVAVLTEGGLVAVNSDWGLDDILLPGTGPAEVDARLRLLVGRTGGVASP 124
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 125 EASGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 184
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
+ G RTVDVHVRRLRAKLG+E+ES+I TVR VGY AV P + +
Sbjct 185 DFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPTRSK 229
>gi|111021831|ref|YP_704803.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110821361|gb|ABG96645.1| transcriptional regulator [Rhodococcus jostii RHA1]
Length=256
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/225 (50%), Positives = 149/225 (67%), Gaps = 4/225 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT + + E+ LP L A SV+ AP + + + AD+A++DAR DLAAAR +C
Sbjct 5 VELLLLTSDPNPEAVLPALALLAHSVRPAPTEVSSLLEASSADIALVDARTDLAAARGLC 64
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L ++ A+ VVAV+ VAV+ DW DD+LL G AE+ ARLRL + R +
Sbjct 65 RLLGSTGSAVPVVAVLTEGGLVAVNSDWGLDDILLPGTGPAEVDARLRLLVGRTGGVASP 124
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 125 EASGKITLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 184
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
+ G RTVDVHVRRLRAKLG+E+ES+I TVR VGY AV P + +
Sbjct 185 DFFGGTRTVDVHVRRLRAKLGSEYESLIGTVRNVGYKAVRPTRSK 229
>gi|298524308|ref|ZP_07011717.1| transcriptional regulatory protein [Mycobacterium tuberculosis
94_M4241A]
gi|306794860|ref|ZP_07433162.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
gi|308231645|ref|ZP_07413279.2| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
26 more sequence titles
Length=254
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/226 (48%), Positives = 145/226 (65%), Gaps = 6/226 (2%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+E+LLLT E + LP L +V+ AP + + +AD ++DAR DL++ R +C
Sbjct 1 MELLLLTSELYPDPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA- 138
R L+++ ++ V+AVV+ VAV DW D++LL + G AE+ ARLRL + RR LA
Sbjct 61 RLLSSTGRSIPVLAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRR-GDLAD 119
Query 139 ----GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWG 194
G + G+LV+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWG
Sbjct 120 QESLGKVSLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWG 179
Query 195 YECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
Y+ G RTVDVHVRRLRAKLG EHE++I TVR VGY AV P + R
Sbjct 180 YDFFGGTRTVDVHVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR 225
>gi|159036005|ref|YP_001535258.1| winged helix family two component response transcriptional regulator
[Salinispora arenicola CNS-205]
gi|157914840|gb|ABV96267.1| putative two component transcriptional regulator, winged helix
family [Salinispora arenicola CNS-205]
Length=239
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/225 (49%), Positives = 145/225 (65%), Gaps = 5/225 (2%)
Query 19 LLEVLLL-TDEADLESA-LPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAAR 76
++E+LLL T A SA LP L+ S++ AP D G D +IDAR++L+ AR
Sbjct 2 IVEILLLVTARAGEPSAVLPALDLLPHSIRTAPRDVRTLVAGPSPDAVLIDARSELSEAR 61
Query 77 RVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRST 136
CR L + ++AVV A +A++ DW DDV+L +AG AE++ARLRL + RR T
Sbjct 62 ATCRMLHATGLNAPLLAVVTEAGLIALNADWGVDDVVLASAGPAEVEARLRLVVGRRNDT 121
Query 137 LA---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVW 193
+A +++ G+L + P +Y A L R L LT EF+L+ FL QH GR FTR +L+REVW
Sbjct 122 VARADSSVRAGELTIDPETYAAKLKGRPLDLTYKEFELLKFLAQHPGRVFTRDQLLREVW 181
Query 194 GYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQ 238
GY+ G RTVDVHVRRLRAKLG+E+ESMI TVR VGY V PP
Sbjct 182 GYDYFGGTRTVDVHVRRLRAKLGSEYESMIGTVRQVGYKFVVPPS 226
>gi|238061322|ref|ZP_04606031.1| two-component system response regulator [Micromonospora sp. ATCC
39149]
gi|237883133|gb|EEP71961.1| two-component system response regulator [Micromonospora sp. ATCC
39149]
Length=237
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/224 (49%), Positives = 143/224 (64%), Gaps = 5/224 (2%)
Query 20 LEVLLLTDEADLESA--LPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARR 77
+E+LLL E + LP L+ SV+ AP D G D ++DAR++L+ AR
Sbjct 1 MEILLLVTARAGEPSVVLPALDLLPHSVRTAPRDVRTLVAGPSPDAVLVDARSELSEARA 60
Query 78 VCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTL 137
CR L + + +VAVV A +A++ DW DDV+L +AG AE++ARLRLA+ R +
Sbjct 61 TCRMLHATGLGVPLVAVVTEAGLIALNADWGVDDVILASAGPAEVEARLRLAVGRLSNAT 120
Query 138 AG---TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWG 194
AG +++ G+L + P +Y A L R L LT EF+L+ FL QH GR FTR +L+REVWG
Sbjct 121 AGAGGSIRAGELSIDPDTYAAKLKGRPLDLTYKEFELLKFLAQHPGRVFTRDQLLREVWG 180
Query 195 YECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQ 238
Y+ G RTVDVHVRRLRAKLG+E+ESMI TVR VGY V PP
Sbjct 181 YDYFGGTRTVDVHVRRLRAKLGSEYESMIGTVRQVGYKFVVPPS 224
>gi|302870164|ref|YP_003838801.1| transcriptional regulator domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|315503559|ref|YP_004082446.1| winged helix family two component transcriptional regulator [Micromonospora
sp. L5]
gi|302573023|gb|ADL49225.1| transcriptional regulator domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|315410178|gb|ADU08295.1| putative two component transcriptional regulator, winged helix
family [Micromonospora sp. L5]
Length=253
Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/221 (50%), Positives = 142/221 (65%), Gaps = 4/221 (1%)
Query 22 VLLLTDEADLESA-LPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR 80
+LL+T A SA LP L+ SV+ AP D G D ++DAR++L+ AR CR
Sbjct 20 LLLVTARAGEPSAVLPALDLLPHSVRTAPRDVRTLVSGPTPDAVLVDARSELSEARATCR 79
Query 81 RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAG- 139
L + + +VAVV A +A++ DW DDV+L AG AE++ARLRLA+ R + AG
Sbjct 80 MLHATGLGVPLVAVVTEAGLIALNADWGVDDVILAGAGPAEVEARLRLAVGRLSNATAGA 139
Query 140 --TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYEC 197
+++ G+L + P +Y A L R L LT EF+L+ FL QH GR FTR +L+REVWGY+
Sbjct 140 GGSIRAGELNIDPDTYAAKLKGRPLDLTYKEFELLKFLAQHPGRVFTRDQLLREVWGYDY 199
Query 198 HGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQ 238
G RTVDVHVRRLRAKLG+E+ESMI TVR VGY V PP
Sbjct 200 FGGTRTVDVHVRRLRAKLGSEYESMIGTVRQVGYKFVVPPS 240
>gi|330470371|ref|YP_004408114.1| winged helix family two component transcriptional regulator [Verrucosispora
maris AB-18-032]
gi|328813342|gb|AEB47514.1| two component transcriptional regulator, winged helix family
protein [Verrucosispora maris AB-18-032]
Length=248
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/223 (50%), Positives = 146/223 (66%), Gaps = 5/223 (2%)
Query 19 LLEVLLL-TDEADLESA-LPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAAR 76
++E+LLL T A SA LP L+ SV+ AP D G D ++DAR++L+ AR
Sbjct 2 IVEILLLVTARAGEPSAVLPALDLLPHSVRTAPRDVRTLVAGPSPDAVLVDARSELSEAR 61
Query 77 RVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRST 136
CR L + + +VAVV A +A++ DW DDV+L +AG AE++ARLRLA+ R +
Sbjct 62 ATCRMLHATGLGVPLVAVVTEAGLIALNADWGVDDVILASAGPAEVEARLRLAVGRLSNA 121
Query 137 LAG---TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVW 193
AG +++ G+L++ P +Y A L R L LT EF+L+ FL QH GR FTR +L+REVW
Sbjct 122 TAGVGGSIRAGELMIDPDTYAAKLKGRPLDLTYKEFELLKFLAQHPGRVFTRDQLLREVW 181
Query 194 GYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
GY+ G RTVDVHVRRLRAKLG+E+ESMI TVR VGY V P
Sbjct 182 GYDYFGGTRTVDVHVRRLRAKLGSEYESMIGTVRQVGYKFVVP 224
>gi|145592859|ref|YP_001157156.1| winged helix family two component response transcriptional regulator
[Salinispora tropica CNB-440]
gi|145302196|gb|ABP52778.1| putative two component transcriptional regulator, winged helix
family [Salinispora tropica CNB-440]
Length=239
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/224 (50%), Positives = 143/224 (64%), Gaps = 5/224 (2%)
Query 19 LLEVLLL-TDEADLESA-LPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAAR 76
++E+LLL T A SA LP L+ SV+ AP D G DV +IDAR++L+ AR
Sbjct 2 IVEILLLVTAHAGEPSAVLPALDLLPHSVRTAPRDVRTLVAGPSPDVVVIDARSELSEAR 61
Query 77 RVCRRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRST 136
CR L + ++AVV A +A++ DW DDV+L +AG AE++ARLRL I R T
Sbjct 62 DTCRMLHATGLNAPLIAVVTEAGLIALNADWGVDDVILASAGPAEVEARLRLVIGRLADT 121
Query 137 LAG---TLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVW 193
G +++ G+L + +Y A L R L LT EF+L+ FL QH GR FTR +L+REVW
Sbjct 122 TMGADSSIRAGELTIDTDTYAAKLKGRPLDLTYKEFELLKFLAQHPGRVFTRDQLLREVW 181
Query 194 GYECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPP 237
GY+ G RTVDVHVRRLRAKLG+E+ESMI TVR VGY V PP
Sbjct 182 GYDYFGGTRTVDVHVRRLRAKLGSEYESMIGTVRQVGYKLVVPP 225
>gi|183984833|ref|YP_001853124.1| transcriptional regulatory protein [Mycobacterium marinum M]
gi|183178159|gb|ACC43269.1| transcriptional regulatory protein [Mycobacterium marinum M]
Length=264
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/219 (48%), Positives = 138/219 (64%), Gaps = 4/219 (1%)
Query 32 ESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTSAPALAV 91
+ LP L +V+ AP + + +AD ++DAR DL+AAR +CR L+T+ ++ V
Sbjct 23 DPVLPSLSLLPHNVRTAPAEASSLLEAGNADAVLVDARNDLSAARGLCRLLSTAGRSVPV 82
Query 92 VAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTL----AGTLQFGDLV 147
+AVV VAV DW D++LL + G AE+ ARLRL + RR G + G+LV
Sbjct 83 LAVVNEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGGQADQESVGKVSLGELV 142
Query 148 LHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDVH 207
+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY+ G RTVDVH
Sbjct 143 IDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDVH 202
Query 208 VRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISES 246
VRRLRAKLG EHE++I TVR VGY AV P + R + E+
Sbjct 203 VRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRSVAVEA 241
>gi|262203794|ref|YP_003275002.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
gi|262087141|gb|ACY23109.1| transcriptional regulator domain protein [Gordonia bronchialis
DSM 43247]
Length=270
Score = 191 bits (486), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/234 (49%), Positives = 151/234 (65%), Gaps = 4/234 (1%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
+++LLLT + + ES LP L A +V+ AP + + ++DVAI+DAR DLAAAR +C
Sbjct 1 MDLLLLTADPNPESVLPSLSLLAHTVRVAPTEVSSLMEAGNSDVAIVDARTDLAAARGLC 60
Query 80 RRLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRST--- 136
R L ++ A V AV+ VAV+ DW D+ LL G AEL ARLRL + R R
Sbjct 61 RLLGSTGSAAPVAAVLTEGGLVAVNADWGIDEFLLPGTGPAELDARLRLLLARTRGVSTE 120
Query 137 -LAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
+G + G+LV+ +YTA L R L LT EF+L+ +L Q+AGR FTR +L++EVWGY
Sbjct 121 EASGKVPLGELVIDEGTYTARLRGRPLDLTYKEFELLKYLAQNAGRVFTRAQLLQEVWGY 180
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWIISESILN 249
+ G RTVDVHVRRLRAKLG+EHES+I TVR VGY AV P + R S++ L
Sbjct 181 DFFGGTRTVDVHVRRLRAKLGSEHESLIGTVRNVGYKAVRPSRGRSAGSDAALG 234
>gi|291452321|ref|ZP_06591711.1| transcriptional regulatory protein [Streptomyces albus J1074]
gi|291355270|gb|EFE82172.1| transcriptional regulatory protein [Streptomyces albus J1074]
Length=263
Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/222 (48%), Positives = 138/222 (63%), Gaps = 4/222 (1%)
Query 22 VLLLTDEADLES-ALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR 80
+LLLT+ + LP L V+ AP + P ADV +ID R DL R +C+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHQVRVAPAEGPALVDTPGADVILIDGRRDLPQVRSLCQ 63
Query 81 RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGT 140
L ++ P +V VV AV DW DDVLL+ AG AE++ARLRLA+ R++ T +
Sbjct 64 LLRSTGPGCPLVLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQQITTDDS 123
Query 141 ---LQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYEC 197
++ GDL + A+Y+A L R L LT EF+L+ +L QH GR FTR +L++EVWGY+
Sbjct 124 PMEIRNGDLSVDEATYSAKLKGRILDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDY 183
Query 198 HGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQP 239
G RTVDVHVRRLRAKLG EHES+I TVR VGY VTP +P
Sbjct 184 FGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKP 225
>gi|345001134|ref|YP_004803988.1| putative winged helix family two component transcriptional regulator
[Streptomyces sp. SirexAA-E]
gi|344316760|gb|AEN11448.1| putative two component transcriptional regulator, winged helix
family [Streptomyces sp. SirexAA-E]
Length=267
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/222 (48%), Positives = 138/222 (63%), Gaps = 4/222 (1%)
Query 22 VLLLTDEADLES-ALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR 80
+LLLT+ + LP L SV+ AP + P ADV +ID R DL R +C+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHSVRVAPAEGPALVDTPGADVILIDGRRDLPQVRSLCQ 63
Query 81 RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGT 140
L ++ P ++ VV AV DW DDVLL+ AG AE++ARLRLA R++ T +
Sbjct 64 LLRSTGPGCPLILVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLATGRQQITTDDS 123
Query 141 ---LQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYEC 197
++ GDL + A+Y+A L R L LT EF+L+ +L QH GR FTR +L++EVWGY+
Sbjct 124 PMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDY 183
Query 198 HGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQP 239
G RTVDVHVRRLRAKLG EHES+I TVR VGY VTP +P
Sbjct 184 FGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKP 225
>gi|118616284|ref|YP_904616.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
gi|118568394|gb|ABL03145.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
Length=255
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/215 (48%), Positives = 135/215 (63%), Gaps = 4/215 (1%)
Query 32 ESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTSAPALAV 91
+ LP L +V+ AP + + +AD + DAR DL+AAR +CR L+T+ ++ V
Sbjct 14 DPVLPSLSLLPHNVRTAPAEASSLLEAGNADAVLADARNDLSAARGLCRLLSTAGRSVPV 73
Query 92 VAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTL----AGTLQFGDLV 147
+AVV VAV DW D++LL + G AE+ ARLRL + RR G + G+LV
Sbjct 74 LAVVNEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRRGGQADQESVGKVSLGELV 133
Query 148 LHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDVH 207
+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY+ G RTVDVH
Sbjct 134 IDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDVH 193
Query 208 VRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPRWI 242
VRRLRAKLG EHE++I TVR VGY AV P + R +
Sbjct 194 VRRLRAKLGPEHEALIGTVRNVGYKAVRPARGRSV 228
>gi|134103524|ref|YP_001109185.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
gi|291008373|ref|ZP_06566346.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
gi|133916147|emb|CAM06260.1| transcriptional regulator [Saccharopolyspora erythraea NRRL 2338]
Length=256
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/221 (52%), Positives = 139/221 (63%), Gaps = 9/221 (4%)
Query 21 EVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADA-DVAIIDARADLAAARRVC 79
E+LLLT + D E+ LP L V+ P +PGA A DV ++DAR DLA AR +C
Sbjct 4 ELLLLTSDRDCEAVLPALGLLPHRVRVLP-PEPGAILSAGTHDVVLVDARTDLAGARDLC 62
Query 80 RRLTTS-APALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA 138
R L AP V+AVV V V +W DD+LL AG AE+ ARLRL TRR +
Sbjct 63 RVLAVGDAP---VLAVVNEGGLVTVSAEWGVDDILLPTAGPAEIDARLRLLTTRRGADAG 119
Query 139 ---GTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGY 195
G L GDLV+ ++YTA L R L LT EF+L+ +L QHAGR FTR +L++EVWGY
Sbjct 120 EGDGMLTVGDLVIEESTYTARLKGRALELTYKEFELLKYLAQHAGRVFTRAQLLQEVWGY 179
Query 196 ECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTP 236
+ G RTVDVHVRRLRAKLG E++SMI TVR VGY V P
Sbjct 180 DFFGGTRTVDVHVRRLRAKLGPEYDSMIGTVRNVGYKFVRP 220
>gi|302543581|ref|ZP_07295923.1| transcriptional regulatory protein GlnR [Streptomyces hygroscopicus
ATCC 53653]
gi|302461199|gb|EFL24292.1| transcriptional regulatory protein GlnR [Streptomyces himastatinicus
ATCC 53653]
Length=275
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/221 (48%), Positives = 138/221 (63%), Gaps = 4/221 (1%)
Query 22 VLLLTDEADLES-ALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR 80
+LLLT+ + LP L SV+ AP + P ADV +ID R DL R +C+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHSVRVAPAEGPALVDTPGADVILIDGRRDLPQVRSLCQ 63
Query 81 RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGT 140
L ++ P +V VV AV DW DDVLL+ AG AE++ARLRLA+ R++ T +
Sbjct 64 LLRSTGPGCPLVLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQQITTDDS 123
Query 141 ---LQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYEC 197
++ GDL + A+Y+A L R L LT EF+L+ +L QH GR FTR +L++EVWGY+
Sbjct 124 PMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDY 183
Query 198 HGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQ 238
G RTVDVHVRRLRAKLG EHES+I TVR VGY VTP +
Sbjct 184 FGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEK 224
>gi|31792006|ref|NP_854499.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
gi|121636742|ref|YP_976965.1| transcriptional regulatory protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224989213|ref|YP_002643900.1| transcriptional regulatory protein [Mycobacterium bovis BCG str.
Tokyo 172]
18 more sequence titles
Length=255
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/214 (48%), Positives = 137/214 (65%), Gaps = 6/214 (2%)
Query 32 ESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTSAPALAV 91
+ LP L +V+ AP + + +AD ++DAR DL++ R +CR L+++ ++ V
Sbjct 14 DPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSSTGRSIPV 73
Query 92 VAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA-----GTLQFGDL 146
+AVV+ VAV DW D++LL + G AE+ ARLRL + RR LA G + G+L
Sbjct 74 LAVVSEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRR-GDLADQESLGKVSLGEL 132
Query 147 VLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDV 206
V+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY+ G RTVDV
Sbjct 133 VIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDV 192
Query 207 HVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
HVRRLRAKLG EHE++I TVR VGY AV P + R
Sbjct 193 HVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR 226
>gi|15607958|ref|NP_215333.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|148660596|ref|YP_001282119.1| transcriptional regulator [Mycobacterium tuberculosis H37Ra]
gi|148822024|ref|YP_001286778.1| transcriptional regulatory protein [Mycobacterium tuberculosis
F11]
23 more sequence titles
Length=255
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/214 (48%), Positives = 137/214 (65%), Gaps = 6/214 (2%)
Query 32 ESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTSAPALAV 91
+ LP L +V+ AP + + +AD ++DAR DL++ R +CR L+++ ++ V
Sbjct 14 DPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSSTGRSIPV 73
Query 92 VAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA-----GTLQFGDL 146
+AVV+ VAV DW D++LL + G AE+ ARLRL + RR LA G + G+L
Sbjct 74 LAVVSEGGLVAVSADWGLDEILLLSTGPAEIDARLRLVVGRR-GDLADQESLGKVSLGEL 132
Query 147 VLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDV 206
V+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY+ G RTVDV
Sbjct 133 VIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDV 192
Query 207 HVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
HVRRLRAKLG EHE++I TVR VGY AV P + R
Sbjct 193 HVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR 226
>gi|296141220|ref|YP_003648463.1| winged helix family two component transcriptional regulator [Tsukamurella
paurometabola DSM 20162]
gi|296029354|gb|ADG80124.1| putative two component transcriptional regulator, winged helix
family [Tsukamurella paurometabola DSM 20162]
Length=243
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/226 (48%), Positives = 140/226 (62%), Gaps = 5/226 (2%)
Query 20 LEVLLLTDEADLESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVC 79
++++LLT + + + LP L A +V+ D + ADVA++DAR DL AAR +C
Sbjct 1 MDLILLTSDPNPDGVLPALSLLAHTVRPLAADVSSLLEVGPADVALVDARTDLVAARGLC 60
Query 80 RRL-TTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRR----R 134
R L TT + VVAV+ VA + DW DD LL A G AE+ ARLRL RR
Sbjct 61 RLLGTTGGGQIPVVAVLTEGGLVAANADWGLDDFLLPATGPAEIDARLRLVAGRRIGGAE 120
Query 135 STLAGTLQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWG 194
+A + G+L++ +YTA L + L LT EF+L+ FL Q+ GR FTR +L++EVWG
Sbjct 121 DEVADKITLGELLIDEGTYTARLRGKPLDLTYKEFELLKFLAQNVGRVFTRAQLLQEVWG 180
Query 195 YECHGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
Y+ G RTVDVHVRRLRAKLGAEHE MI TVR VGY AV P + +
Sbjct 181 YDFFGGTRTVDVHVRRLRAKLGAEHEGMIGTVRNVGYKAVRPARGK 226
>gi|340625833|ref|YP_004744285.1| transcriptional regulatory protein [Mycobacterium canettii CIPT
140010059]
gi|340004023|emb|CCC43159.1| transcriptional regulatory protein [Mycobacterium canettii CIPT
140010059]
Length=255
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/214 (48%), Positives = 137/214 (65%), Gaps = 6/214 (2%)
Query 32 ESALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCRRLTTSAPALAV 91
+ LP L +V+ AP + + +AD ++DAR DL++ R +CR L+++ ++ V
Sbjct 14 DPVLPALSLLPHTVRTAPAEASSLLEAGNADAVLVDARNDLSSGRGLCRLLSSTGRSIPV 73
Query 92 VAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLA-----GTLQFGDL 146
+AVV+ VAV DW D++LL + G AE+ ARLRL + RR LA G + G+L
Sbjct 74 LAVVSEGGLVAVSADWGLDEILLPSTGPAEIDARLRLVVGRR-GDLADQESLGKVSLGEL 132
Query 147 VLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYECHGRIRTVDV 206
V+ +YTA L R L LT EF+L+ +L QHAGR FTR +L+ EVWGY+ G RTVDV
Sbjct 133 VIDEGTYTARLRGRPLDLTYKEFELLKYLAQHAGRVFTRAQLLHEVWGYDFFGGTRTVDV 192
Query 207 HVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQPR 240
HVRRLRAKLG EHE++I TVR VGY AV P + R
Sbjct 193 HVRRLRAKLGPEHEALIGTVRNVGYKAVRPARGR 226
>gi|295837511|ref|ZP_06824444.1| transcriptional regulatory protein GlnR [Streptomyces sp. SPB74]
gi|197697937|gb|EDY44870.1| transcriptional regulatory protein GlnR [Streptomyces sp. SPB74]
Length=266
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/222 (47%), Positives = 138/222 (63%), Gaps = 4/222 (1%)
Query 22 VLLLTDEADLES-ALPELESFAQSVQRAPLDDPGAAKGADADVAIIDARADLAAARRVCR 80
+LLLT+ + LP L +V+ AP + P ADV ++D R DL R +C+
Sbjct 4 LLLLTNALQPSTEVLPALGLLLHNVRVAPAEGPALVDTPGADVILVDGRRDLPQVRSLCQ 63
Query 81 RLTTSAPALAVVAVVAPANFVAVDGDWIFDDVLLNAAGGAELQARLRLAITRRRSTLAGT 140
L ++ P ++ VV AV DW DDVLL+ AG AE++ARLRLA RR++ +
Sbjct 64 LLRSTGPGCPLLLVVTEGGLAAVTADWGVDDVLLDTAGPAEVEARLRLATGRRQNAADDS 123
Query 141 ---LQFGDLVLHPASYTASLGDRDLGLTLTEFKLMNFLVQHAGRAFTRTRLMREVWGYEC 197
++ GDL + A+Y+A L R L LT EF+L+ +L QH GR FTR +L++EVWGY+
Sbjct 124 PMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDY 183
Query 198 HGRIRTVDVHVRRLRAKLGAEHESMIDTVRGVGYMAVTPPQP 239
G RTVDVHVRRLRAKLG EHES+I TVR VGY VTP +P
Sbjct 184 FGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKP 225
Lambda K H
0.323 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 365242488240
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40