BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2894c Length=298 Score E Sequences producing significant alignments: (Bits) Value gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase ... 575 2e-162 gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase ... 575 2e-162 gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Myco... 568 4e-160 gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombina... 510 8e-143 gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Myco... 506 2e-141 gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Myc... 494 8e-138 gi|342858258|ref|ZP_08714913.1| site-specific tyrosine recombina... 490 1e-136 gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase... 486 2e-135 gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase... 481 8e-134 gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase ... 481 8e-134 gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycob... 476 1e-132 gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombin... 465 3e-129 gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase... 465 3e-129 gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] 465 5e-129 gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase ... 464 7e-129 gi|333991254|ref|YP_004523868.1| site-specific tyrosine recombin... 459 2e-127 gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase... 454 1e-125 gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subun... 450 1e-124 gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombin... 450 1e-124 gi|289763070|ref|ZP_06522448.1| integrase/recombinase xerC [Myco... 446 2e-123 gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase... 438 6e-121 gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombin... 416 2e-114 gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombina... 383 2e-104 gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombina... 381 7e-104 gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhod... 381 8e-104 gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombina... 378 8e-103 gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase ... 368 6e-100 gi|333919247|ref|YP_004492828.1| site-specific tyrosine recombin... 357 9e-97 gi|343926722|ref|ZP_08766219.1| tyrosine recombinase XerC [Gordo... 355 5e-96 gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amy... 346 2e-93 gi|340525284|gb|AEK40489.1| integrase/recombinase XerC [Amycolat... 345 3e-93 gi|296139371|ref|YP_003646614.1| integrase family protein [Tsuka... 344 1e-92 gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharo... 343 2e-92 gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharop... 342 3e-92 gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhod... 338 8e-91 gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhod... 337 1e-90 gi|262202039|ref|YP_003273247.1| integrase family protein [Gordo... 335 5e-90 gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus ru... 333 2e-89 gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombina... 329 3e-88 gi|296394365|ref|YP_003659249.1| integrase family protein [Segni... 329 3e-88 gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subun... 325 6e-87 gi|289751559|ref|ZP_06510937.1| integrase xerC [Mycobacterium tu... 323 2e-86 gi|256379909|ref|YP_003103569.1| integrase family protein [Actin... 320 2e-85 gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorop... 315 5e-84 gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit ... 313 2e-83 gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Strep... 308 7e-82 gi|119717469|ref|YP_924434.1| phage integrase family protein [No... 305 7e-81 gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrob... 303 2e-80 gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subun... 302 5e-80 gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase Xe... 300 1e-79 >gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Rv] gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis AF2122/97] gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG str. Pasteur 1173P2] 74 more sequence titles Length=298 Score = 575 bits (1483), Expect = 2e-162, Method: Compositional matrix adjust. Identities = 297/298 (99%), Positives = 298/298 (100%), Gaps = 0/298 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 +QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA Sbjct 1 MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA Sbjct 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV Sbjct 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD Sbjct 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA Sbjct 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 >gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] Length=315 Score = 575 bits (1483), Expect = 2e-162, Method: Compositional matrix adjust. Identities = 298/298 (100%), Positives = 298/298 (100%), Gaps = 0/298 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA Sbjct 18 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 77 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA Sbjct 78 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 137 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV Sbjct 138 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 197 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD Sbjct 198 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 257 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA Sbjct 258 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 315 >gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] Length=298 Score = 568 bits (1464), Expect = 4e-160, Method: Compositional matrix adjust. Identities = 294/298 (99%), Positives = 295/298 (99%), Gaps = 0/298 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 +QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA Sbjct 1 MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAGAARTTLARRTSAVKAFTAWAVRR LLAGDPAARLQVPK RRTLPA LRQDQALRAMA Sbjct 61 GAGAARTTLARRTSAVKAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAMA 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV Sbjct 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD Sbjct 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA Sbjct 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 >gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii ATCC 12478] Length=302 Score = 510 bits (1314), Expect = 8e-143, Method: Compositional matrix adjust. Identities = 259/296 (88%), Positives = 279/296 (95%), Gaps = 0/296 (0%) Query 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62 AIL+EFD+YLALQCGRS HTRRAYLGDLR LFAFLADRGS+L+ L+L +LR+WLA+ +GA Sbjct 7 AILEEFDDYLALQCGRSAHTRRAYLGDLRLLFAFLADRGSALETLSLPLLRAWLASASGA 66 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 G ARTTLARRTSAVKAFTAWAVRRGLL GDPAARLQVPKA RTLPAVLRQDQAL AM AA Sbjct 67 GVARTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALAAMTAA 126 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 +SGAEQGDPLALRDRLIVELLYATGIRVSELCGLD+DD+DTGHR+VRVLGKGNKQRTVP+ Sbjct 127 KSGAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQRTVPY 186 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G+PAA+AL AWL DGR ALVTAESG ALLLGARGRRLD RQART VHQTVAAV+GAPD+G Sbjct 187 GRPAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNGAPDIG 246 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV RLRAVH++AHPRA Sbjct 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAHPRA 302 >gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length=298 Score = 506 bits (1303), Expect = 2e-141, Method: Compositional matrix adjust. Identities = 264/298 (89%), Positives = 279/298 (94%), Gaps = 0/298 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 ++AIL+EFDEYLALQCGRS HTRRAYLGDLRSL FLADRG+ LD L+L +LRSWL+A A Sbjct 1 MEAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLTFLADRGAGLDGLSLPLLRSWLSAGA 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 AGAARTTLARRTSAVKAFTAWA RRGLLA DP ARLQVPKA RTLPAVLRQDQAL AMA Sbjct 61 AAGAARTTLARRTSAVKAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAMA 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AA+SGA+QGDP+ALRDRLIVE+LYATGIRVSELCGLDVDD+DTGHRLVRVLGKGNKQRTV Sbjct 121 AAKSGAQQGDPMALRDRLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTV 180 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 PFG PAADAL AWL DGR ALVTAESG ALLLGARGRRLDVRQART VHQTV+AVDGAPD Sbjct 181 PFGMPAADALRAWLDDGRPALVTAESGPALLLGARGRRLDVRQARTVVHQTVSAVDGAPD 240 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVHE+AHPRA Sbjct 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAHPRA 298 >gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M] gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M] Length=302 Score = 494 bits (1271), Expect = 8e-138, Method: Compositional matrix adjust. Identities = 264/297 (89%), Positives = 277/297 (94%), Gaps = 0/297 (0%) Query 2 QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAG 61 +AIL+EFDEYLALQCGRS HTRRAYLGDLRSL +LA RG+ L AL+L VLRSWLA AG Sbjct 6 EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAG 65 Query 62 AGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAA 121 AGAARTTLARRTSAVKAFTAWAVRRGLLA DPAARLQVPKA RTLPAVLRQDQAL AM A Sbjct 66 AGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125 Query 122 AESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVP 181 A+SGA+QGDPLALRDRLIVELLYATGIRVSELCGLD+DD+DTGHRLVRVLGKGNKQRT P Sbjct 126 AKSGAQQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAP 185 Query 182 FGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 241 FGQPAA+AL AWL DGR AL TAESG ALLLGARGRRLDVRQART VHQTVAAVDGAPDM Sbjct 186 FGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTVAAVDGAPDM 245 Query 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVH++AHPRA Sbjct 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 302 >gi|342858258|ref|ZP_08714913.1| site-specific tyrosine recombinase XerC [Mycobacterium colombiense CECT 3035] gi|342133962|gb|EGT87142.1| site-specific tyrosine recombinase XerC [Mycobacterium colombiense CECT 3035] Length=298 Score = 490 bits (1261), Expect = 1e-136, Method: Compositional matrix adjust. Identities = 253/298 (85%), Positives = 274/298 (92%), Gaps = 0/298 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 +QAILDEFDEYL LQCGRS HTRRAYLGDLRSLFAFL DRG+ LD L+L +LRSWL+A A Sbjct 1 MQAILDEFDEYLDLQCGRSAHTRRAYLGDLRSLFAFLGDRGAGLDGLSLPLLRSWLSAAA 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 +G ARTTLARRTSAVKAFTAWAVRRGLL+ DPA RLQVPKA RTLP+VLR+DQA AMA Sbjct 61 ASGVARTTLARRTSAVKAFTAWAVRRGLLSTDPAVRLQVPKAHRTLPSVLRRDQAADAMA 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AA+SGA+QGDPLALRDRLIVE+LYATGIRVSELCGLD+DD+DT HRLVRVLGKGNKQR+ Sbjct 121 AAKSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTHHRLVRVLGKGNKQRSA 180 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 PFG+PAA+AL AWL DGR AL A+SG ALLLG RGRRLDVRQART VHQTVAAVDGAPD Sbjct 181 PFGRPAAEALDAWLADGRPALANAQSGPALLLGPRGRRLDVRQARTVVHQTVAAVDGAPD 240 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVH++AHPRA Sbjct 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 298 >gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans Agy99] gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99] Length=302 Score = 486 bits (1251), Expect = 2e-135, Method: Compositional matrix adjust. Identities = 261/297 (88%), Positives = 275/297 (93%), Gaps = 0/297 (0%) Query 2 QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAG 61 +AIL+EFDEYLALQCGRS HTRRAYLGDLRSL +LA RG+ L AL+L VLRSWLA AG Sbjct 6 EAILEEFDEYLALQCGRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAG 65 Query 62 AGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAA 121 AGAARTTLARRTSAVKAFTAWAVRRGLLA DPAARLQVPKA RTLPAVLRQDQAL AM A Sbjct 66 AGAARTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTA 125 Query 122 AESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVP 181 A+S A+QGDPLALRDRLIVELLYATGIRVSEL GLD+DD+DTGHRLVRVLGKGNKQRT P Sbjct 126 AKSSAQQGDPLALRDRLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAP 185 Query 182 FGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 241 FGQPAA+AL AWL DGR AL TAESG ALLLGARGRRLDVRQART VHQT+AAVDGAPDM Sbjct 186 FGQPAAEALQAWLADGRPALATAESGPALLLGARGRRLDVRQARTVVHQTIAAVDGAPDM 245 Query 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVH++AHPRA Sbjct 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 302 >gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104] gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104] Length=301 Score = 481 bits (1237), Expect = 8e-134, Method: Compositional matrix adjust. Identities = 250/297 (85%), Positives = 269/297 (91%), Gaps = 0/297 (0%) Query 2 QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAG 61 + IL+EFDEYLALQCGRS HTRRAYLGDLRSL AF +RG+ LD L+L +LRSWL+A A Sbjct 5 EPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAA 64 Query 62 AGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAA 121 G ARTTLARRTSAVKAFTAWAVRRGLL DPAARLQVPK RTLPAVLRQDQAL AMAA Sbjct 65 GGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAA 124 Query 122 AESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVP 181 A++GA QGDP+ALRDRLIVE+LYATGIRVSELCGLD+DD+DTG RLVRVLGKGNKQR+VP Sbjct 125 AKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVP 184 Query 182 FGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 241 FG PA +ALHAWL DGR AL AESG ALLLGARGRRLDVRQART VHQT+AAV GAPDM Sbjct 185 FGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDM 244 Query 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVH++AHPRA Sbjct 245 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301 >gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|336459054|gb|EGO38004.1| site-specific recombinase XerD [Mycobacterium avium subsp. paratuberculosis S397] Length=301 Score = 481 bits (1237), Expect = 8e-134, Method: Compositional matrix adjust. Identities = 250/297 (85%), Positives = 269/297 (91%), Gaps = 0/297 (0%) Query 2 QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAG 61 + IL+EFDEYLALQCGRS HTRRAYLGDLRSL AF +RG+ LD L+L +LRSWL+A A Sbjct 5 EPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAA 64 Query 62 AGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAA 121 G ARTTLARRTSAVKAFTAWAVRRGLL DPAARLQVPK RTLPAVLRQDQAL AMAA Sbjct 65 GGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAA 124 Query 122 AESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVP 181 A++GA QGDP+ALRDRLIVE+LYATGIRVSELCGLD+DD+DTG RLVRVLGKGNKQR+VP Sbjct 125 AKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVP 184 Query 182 FGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 241 FG PA +ALHAWL DGR AL AESG ALLLGARGRRLDVRQART VHQT+AAV GAPDM Sbjct 185 FGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDM 244 Query 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVH++AHPRA Sbjct 245 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301 >gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] Length=299 Score = 476 bits (1226), Expect = 1e-132, Method: Compositional matrix adjust. Identities = 273/304 (90%), Positives = 277/304 (92%), Gaps = 11/304 (3%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 +QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA Sbjct 1 MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA Sbjct 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQ--- 177 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDI+ HR +G G +Q Sbjct 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIE--HR--PSVGSGARQGQQ 176 Query 178 ---RTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAA 234 T QP LVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAA Sbjct 177 EAHSTCSGSQPPMRCTPG-LVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAA 235 Query 235 VDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERA 294 VDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERA Sbjct 236 VDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERA 295 Query 295 HPRA 298 HPRA Sbjct 296 HPRA 299 >gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS] gi|166918889|sp|A3PXY1.1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS] Length=300 Score = 465 bits (1197), Expect = 3e-129, Method: Compositional matrix adjust. Identities = 238/300 (80%), Positives = 266/300 (89%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADR--GSSLDALTLSVLRSWLAA 58 ++++LD FD+YLAL+ GRS HTRRAYLGDLRSLFAF+ +R G+ L +LTL VLR+WL+A Sbjct 1 MESVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFVDERTPGADLGSLTLPVLRAWLSA 60 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 A AG ARTTLARRTSAVK FTAWAVRRGL+A DPA RLQ+PKARRTLPAVLRQDQA A Sbjct 61 QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 + AA SGA+QGDPLALRDRLIVE+LYATGIRVSELCGLD+DD+DT RL+RVLGKG+KQR Sbjct 121 LDAANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQR 180 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 TVPFG+PA AL AWL GR AL TAESG ALLLGARGRRLD RQART VH+TV AV GA Sbjct 181 TVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGA 240 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLR+VQELLGHS+LATTQLYTHV VARLRAVH++AHPRA Sbjct 241 PDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS] gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS] gi|123070325|sp|Q1BAI5.1|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC gi|166918890|sp|A1UEH7.1|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS] gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS] Length=300 Score = 465 bits (1197), Expect = 3e-129, Method: Compositional matrix adjust. Identities = 238/300 (80%), Positives = 265/300 (89%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADR--GSSLDALTLSVLRSWLAA 58 ++++LD FD+YLAL+ GRS HTRRAYLGDLRSLFAF +R G+ L +LTL VLR+WL+A Sbjct 1 MESVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSA 60 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 A AG ARTTLARRTSAVK FTAWAVRRGL+A DPA RLQ+PKARRTLPAVLRQDQA A Sbjct 61 QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 + AA SGA+QGDPLALRDRLIVE+LYATGIRVSELCGLD+DD+DT RL+RVLGKG+KQR Sbjct 121 LDAANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQR 180 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 TVPFG+PA AL AWL GR AL TAESG ALLLGARGRRLD RQART VH+TV AV GA Sbjct 181 TVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGA 240 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLR+VQELLGHS+LATTQLYTHV VARLRAVH++AHPRA Sbjct 241 PDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] Length=302 Score = 465 bits (1196), Expect = 5e-129, Method: Compositional matrix adjust. Identities = 252/296 (86%), Positives = 265/296 (90%), Gaps = 0/296 (0%) Query 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62 AILDEFDE+LAL+CGRS HTRRAYLGDLRSL L RGS LD L+L VLRSWLA AGA Sbjct 7 AILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGA 66 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 GAARTTLARR SAVKAFTAWA RG LA DPAARLQVP+A RTLPAVLRQDQAL+ MAAA Sbjct 67 GAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAA 126 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 +SGAEQGDPLALRDRLIVE+LYATGIRVSELCGLD+DD+DT HRLVRVLGKGNKQRT PF Sbjct 127 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 186 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G PAADAL WL DGR ALVT ESG ALLLG+RGRRLDVRQART VHQTVA V GAPDMG Sbjct 187 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMG 246 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLR VH++AHPRA Sbjct 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHPRA 302 >gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN] gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae Br4923] gi|18202762|sp|Q9CBU0.1|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae] gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923] Length=297 Score = 464 bits (1194), Expect = 7e-129, Method: Compositional matrix adjust. Identities = 252/296 (86%), Positives = 265/296 (90%), Gaps = 0/296 (0%) Query 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGA 62 AILDEFDE+LAL+CGRS HTRRAYLGDLRSL L RGS LD L+L VLRSWLA AGA Sbjct 2 AILDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGA 61 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 GAARTTLARR SAVKAFTAWA RG LA DPAARLQVP+A RTLPAVLRQDQAL+ MAAA Sbjct 62 GAARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAA 121 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 +SGAEQGDPLALRDRLIVE+LYATGIRVSELCGLD+DD+DT HRLVRVLGKGNKQRT PF Sbjct 122 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 181 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G PAADAL WL DGR ALVT ESG ALLLG+RGRRLDVRQART VHQTVA V GAPDMG Sbjct 182 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMG 241 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLR VH++AHPRA Sbjct 242 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHPRA 297 >gi|333991254|ref|YP_004523868.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JDM601] gi|333487222|gb|AEF36614.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JDM601] Length=299 Score = 459 bits (1182), Expect = 2e-127, Method: Compositional matrix adjust. Identities = 238/299 (80%), Positives = 260/299 (87%), Gaps = 1/299 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG-SSLDALTLSVLRSWLAAT 59 + AIL+EFDE+LAL+ GRS HTRRAYLGDLRSLFAFLA+RG S +D L+L +LRSWLA Sbjct 1 MDAILEEFDEHLALERGRSEHTRRAYLGDLRSLFAFLAERGHSGIDGLSLPLLRSWLAEQ 60 Query 60 AGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM 119 A AGAAR+TLARRTS VK FTAWA RRGLLA DP ARL +PKARRTLPAVLR+DQA M Sbjct 61 ASAGAARSTLARRTSTVKTFTAWAARRGLLASDPGARLALPKARRTLPAVLREDQAHDVM 120 Query 120 AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRT 179 AA+SGAEQ DP+ALRDRLI E+LYAT +RVSELCGLDVDD+D RL+RVLGKGNKQRT Sbjct 121 LAAKSGAEQNDPIALRDRLIAEMLYATAVRVSELCGLDVDDVDVSRRLLRVLGKGNKQRT 180 Query 180 VPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAP 239 VPFG+PAA+AL WLV GR L TAESG ALLLGARG RLD RQART VHQTVAAV GAP Sbjct 181 VPFGEPAAEALQTWLVQGRPLLATAESGPALLLGARGGRLDPRQARTVVHQTVAAVGGAP 240 Query 240 DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 DMGPHGLRH+AATHLLEGGADLR+VQELLGHSSLATTQLYTHV VARLRAVH+ AHPRA Sbjct 241 DMGPHGLRHTAATHLLEGGADLRIVQELLGHSSLATTQLYTHVTVARLRAVHDLAHPRA 299 >gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii PYR-1] gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1] Length=319 Score = 454 bits (1167), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 244/300 (82%), Positives = 266/300 (89%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADR--GSSLDALTLSVLRSWLAA 58 + + L+EFDEYLAL+ GRS HTRRAYLGD+R+LF FLA+R G+ L LTL VLRSWLAA Sbjct 20 IGSCLEEFDEYLALERGRSEHTRRAYLGDVRALFDFLAERRPGTGLRGLTLPVLRSWLAA 79 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 A AGAAR+TLARRTSAVK FTAWAVRRGL+ DPAARLQVPKARRTLP+VLRQDQA A Sbjct 80 QATAGAARSTLARRTSAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREA 139 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 M AA+SGA+QGDPLALRDRLIVE+LYATGIRVSELCGLD+DD+DT RL+RVLGKGNKQR Sbjct 140 MDAAKSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQR 199 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 TVP+G PA AL AWL DGR ALVTA SG ALLLGARG RLD RQART VHQT+AAV GA Sbjct 200 TVPYGDPAHAALTAWLSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGA 259 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV VARLRAVH++AHPRA Sbjct 260 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 319 >gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] Length=300 Score = 450 bits (1157), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 236/300 (79%), Positives = 264/300 (88%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADR--GSSLDALTLSVLRSWLAA 58 + +L+EFD YL L+ GRS HTRRAYLGDLRSLFAFL +R G+ L LTL +LRSWLAA Sbjct 1 MDTVLEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAA 60 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 A A AR+TLARRTS+VK FTAWAVRRGL+ DPA+RLQVPKARRTLP+VLRQDQA A Sbjct 61 HAAADTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 + AAESGA+QGDPLA+RDRL+VE+LYATGIRVSELCGLDVDD+DT RL+RVLGKGNKQR Sbjct 121 LEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQR 180 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 TVP+G+PA AL AWL +GR AL TA+SG ALLLGARG+RLD RQART VHQTV+AV GA Sbjct 181 TVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGA 240 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV VARLRAVH++AHPRA Sbjct 241 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum PYR-GCK] gi|189030078|sp|A4TEB1.1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK] Length=300 Score = 450 bits (1157), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 237/300 (79%), Positives = 265/300 (89%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADR--GSSLDALTLSVLRSWLAA 58 + +L+EFD YL L+ GRS HTRRAYLGDLRSLFAFL +R G+ L LTL +LRSWLAA Sbjct 1 MDTVLEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAA 60 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 A AG AR+TLARRTS+VK FTAWAVRRGL+ DPA+RLQVPKARRTLP+VLRQDQA A Sbjct 61 HAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 + AAESGA+QGDPLA+RDRL+VE+LYATGIRVSELCGLDVDD+DT RL+RVLGKGNKQR Sbjct 121 LEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQR 180 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 TVP+G+PA AL AWL +GR AL TA+SG ALLLGARG+RLD RQART VHQTV+AV GA Sbjct 181 TVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGA 240 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV VARLRAVH++AHPRA Sbjct 241 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|289763070|ref|ZP_06522448.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503] gi|289710576|gb|EFD74592.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503] Length=285 Score = 446 bits (1148), Expect = 2e-123, Method: Compositional matrix adjust. Identities = 248/265 (94%), Positives = 251/265 (95%), Gaps = 1/265 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFA-FLADRGSSLDALTLSVLRSWLAAT 59 +QAILDEFDEYLALQCGRSVH G + + F DRGSSLDALTLSVLRSWLAAT Sbjct 1 MQAILDEFDEYLALQCGRSVHHPSCLPGAILDRSSRFSPDRGSSLDALTLSVLRSWLAAT 60 Query 60 AGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM 119 AGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM Sbjct 61 AGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM 120 Query 120 AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRT 179 AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRT Sbjct 121 AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRT 180 Query 180 VPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAP 239 VPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAP Sbjct 181 VPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAP 240 Query 240 DMGPHGLRHSAATHLLEGGADLRVV 264 DMGPHGLRHSAATHLLEGGADLRVV Sbjct 241 DMGPHGLRHSAATHLLEGGADLRVV 265 >gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] gi|166918888|sp|A0QVB4.1|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] Length=300 Score = 438 bits (1126), Expect = 6e-121, Method: Compositional matrix adjust. Identities = 224/300 (75%), Positives = 256/300 (86%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGS--SLDALTLSVLRSWLAA 58 ++++LD+FD YL L+ G S HTRRAY GDL +LF F+ R SL ++L +LRSWLA Sbjct 1 MESVLDQFDAYLGLERGHSDHTRRAYRGDLTALFDFVEQRTGERSLARVSLPLLRSWLAE 60 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 + +GAARTTLARRTS+VK F AWA+RRGL+ DPAARLQVPKARRTLPAVLR+DQAL A Sbjct 61 QSASGAARTTLARRTSSVKTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDA 120 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 + A SGA++GDP+ALRDRLIVELLYATGIRVSELCGLD+DDIDT R+VRVLGKGNKQR Sbjct 121 LDAVNSGAQEGDPIALRDRLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQR 180 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 TVPFG+PA AL AWL +GR L ESG ALLLGARGRRLD RQART VHQTV+AV+GA Sbjct 181 TVPFGEPAHAALTAWLTEGRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGA 240 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLR+VQELLGH+SLATTQLYTHV V RLRAVH++AHPRA Sbjct 241 PDIGPHGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAHPRA 300 >gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus ATCC 19977] gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus] Length=304 Score = 416 bits (1070), Expect = 2e-114, Method: Compositional matrix adjust. Identities = 224/298 (76%), Positives = 250/298 (84%), Gaps = 2/298 (0%) Query 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLA--DRGSSLDALTLSVLRSWLAATA 60 AILDEF E+LAL+ GRSVHT+RAY GDL LF L+ + ++L L+L VLRSWL A A Sbjct 7 AILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGAQA 66 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAAR+T+ARRTSAVK FTAWA RRGLL DPA RLQ PK+RRTLPAVLRQDQA AM Sbjct 67 RQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAAME 126 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AA SGAEQ DP+ALRDRLIVE+LYATGIRVSELCGLD+DDID +++RVLGKG+K+RTV Sbjct 127 AAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKERTV 186 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 PFG PAADAL AWL GR L SG ALLLGARGRR+D RQ RT VHQT++AV GAPD Sbjct 187 PFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGAPD 246 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 +GPHGLRHSAATHLLEGGADLRVVQELLGHS+LATTQLYTHV VARLRAVH++AHPRA Sbjct 247 IGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 304 >gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium intracellulare ATCC 13950] Length=232 Score = 383 bits (984), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 205/232 (89%), Positives = 220/232 (95%), Gaps = 0/232 (0%) Query 67 TTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGA 126 TTLARRTSAVKAFTAWAVRRGLL DPAARLQVPKA RTLPAVLRQDQAL A+AAA+SGA Sbjct 1 TTLARRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVLRQDQALDALAAAKSGA 60 Query 127 EQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPA 186 +QG+P+ALRDRLIVE+LYATGIRVSELCGLD+DD+DT HRLVRVLGKGNKQR+VPFG PA Sbjct 61 QQGEPMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAPA 120 Query 187 ADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGL 246 A+AL AWL DGR ALV A+SG ALLLGARGRR+DVRQART VHQTVAAVDGAPDMGPHGL Sbjct 121 AEALDAWLADGRPALVNADSGPALLLGARGRRIDVRQARTVVHQTVAAVDGAPDMGPHGL 180 Query 247 RHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 RHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV+RLRAVH++AHPRA Sbjct 181 RHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 232 >gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] Length=308 Score = 381 bits (979), Expect = 7e-104, Method: Compositional matrix adjust. Identities = 198/296 (67%), Positives = 231/296 (79%), Gaps = 2/296 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLA--DRGSSLDALTLSVLRSWLAATAGA 62 LD + E+L L GRS HT RAY+GD R+L + + LD L LSV+RSWLAA Sbjct 13 LDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSWLAAQNAV 72 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 G ARTT+ARR S+ + FTAW + G ++ DP RL P ARRTLP VLRQ QAL AM AA Sbjct 73 GTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQALDAMDAA 132 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 ESGA+Q +PLALRDRLIVELLY+TGIRV ELCGLDV+ +D RL+RVLGKGNK+R+VP+ Sbjct 133 ESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGNKERSVPY 192 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G PA AL+ WL GR AL + SG ALLLG RG RLD RQAR+ VH+T+AA+ GAPDMG Sbjct 193 GLPAESALNGWLEHGRPALCSDRSGRALLLGVRGGRLDQRQARSVVHETMAAIPGAPDMG 252 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGH+SLATTQLYTHV+V RLR+VH++AHPRA Sbjct 253 PHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHPRA 308 >gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] Length=310 Score = 381 bits (978), Expect = 8e-104, Method: Compositional matrix adjust. Identities = 198/296 (67%), Positives = 231/296 (79%), Gaps = 2/296 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLA--DRGSSLDALTLSVLRSWLAATAGA 62 LD + E+L L GRS HT RAY+GD R+L + + LD L LSV+RSWLAA Sbjct 15 LDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSWLAAQNAV 74 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 G ARTT+ARR S+ + FTAW + G ++ DP RL P ARRTLP VLRQ QAL AM AA Sbjct 75 GTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQALDAMDAA 134 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 ESGA+Q +PLALRDRLIVELLY+TGIRV ELCGLDV+ +D RL+RVLGKGNK+R+VP+ Sbjct 135 ESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGNKERSVPY 194 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G PA AL+ WL GR AL + SG ALLLG RG RLD RQAR+ VH+T+AA+ GAPDMG Sbjct 195 GLPAESALNGWLEHGRPALSSDRSGRALLLGVRGGRLDQRQARSVVHETMAAIPGAPDMG 254 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGH+SLATTQLYTHV+V RLR+VH++AHPRA Sbjct 255 PHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHPRA 310 >gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] Length=352 Score = 378 bits (970), Expect = 8e-103, Method: Compositional matrix adjust. Identities = 194/196 (99%), Positives = 195/196 (99%), Gaps = 0/196 (0%) Query 99 VPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDV 158 +PKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDV Sbjct 1 MPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDV 60 Query 159 DDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRR 218 DDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRR Sbjct 61 DDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRR 120 Query 219 LDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQL 278 LDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQL Sbjct 121 LDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQL 180 Query 279 YTHVAVARLRAVHERA 294 YTHVAVARLRAVHER Sbjct 181 YTHVAVARLRAVHERG 196 >gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM 10152] gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152] Length=307 Score = 368 bits (945), Expect = 6e-100, Method: Compositional matrix adjust. Identities = 202/300 (68%), Positives = 232/300 (78%), Gaps = 2/300 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG--SSLDALTLSVLRSWLAA 58 + A+L E+ +L L RS HT RAY+GD R+L L R +++ L L +LRSWLA Sbjct 8 LTALLAEYGRHLRLGQNRSAHTVRAYVGDARALLTHLYTRSPDAAIGELDLPLLRSWLAD 67 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 A AGAARTTLARR SAV+ FTAW G L DP RL PKA RTLPAVL + QA+ A Sbjct 68 LAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPKAHRTLPAVLARQQAVAA 127 Query 119 MAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQR 178 M AAESGA Q DP+ALRDRLIVE+LYATGIRVSELCGLD+DD+D RLVRVLGKGNK+R Sbjct 128 MDAAESGARQEDPMALRDRLIVEMLYATGIRVSELCGLDIDDVDRERRLVRVLGKGNKER 187 Query 179 TVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGA 238 +VPFG PA A+ WL GR A T ESG ALL+G RGRRLD RQART VH+ V+A+ GA Sbjct 188 SVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLDQRQARTVVHEVVSAIPGA 247 Query 239 PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PD+GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV++ RL+ VH++AHPRA Sbjct 248 PDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSIERLKKVHDQAHPRA 307 >gi|333919247|ref|YP_004492828.1| site-specific tyrosine recombinase XerC [Amycolicicoccus subflavus DQS3-9A1] gi|333481468|gb|AEF40028.1| site-specific tyrosine recombinase XerC [Amycolicicoccus subflavus DQS3-9A1] Length=355 Score = 357 bits (917), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 194/305 (64%), Positives = 228/305 (75%), Gaps = 7/305 (2%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFA-FLADRG-SSLDALTLSVLRSWLAA 58 + +L F+EYL L+ GRS HT RAY D+RSL A LAD G SL L L LRSW AA Sbjct 51 FERVLRTFEEYLRLRKGRSEHTIRAYRSDVRSLIAHLLADPGRCSLTDLDLRALRSWQAA 110 Query 59 TAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRA 118 + G AR+TLARR S+VK FTAWA GL+A DPAARLQ P+ R LPAVLR++QA A Sbjct 111 QSATGIARSTLARRASSVKTFTAWAQHMGLIADDPAARLQSPRPYRELPAVLRKEQAASA 170 Query 119 MAAAESGAE-----QGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGK 173 + A+ AE D + +RD+LIVELLY+ GIRV ELCGLD+ D+D G+ ++RVLGK Sbjct 171 LDQAKKRAEDRTEGSADAIEIRDQLIVELLYSCGIRVGELCGLDIADLDLGNNVLRVLGK 230 Query 174 GNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVA 233 GNK+R VP+G+PA DAL WL +GR L SG ALLLG RGRRLD RQAR AVH+ +A Sbjct 231 GNKERVVPYGRPARDALDMWLREGRPLLAVPASGDALLLGKRGRRLDQRQARRAVHRVLA 290 Query 234 AVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHER 293 A PD+GPHGLRHSAATHLLEGGADLRVVQELLGH+SLATTQLYTHV++ RLRAVHE+ Sbjct 291 AAADVPDLGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSIGRLRAVHEQ 350 Query 294 AHPRA 298 AHPRA Sbjct 351 AHPRA 355 >gi|343926722|ref|ZP_08766219.1| tyrosine recombinase XerC [Gordonia alkanivorans NBRC 16433] gi|343763321|dbj|GAA13145.1| tyrosine recombinase XerC [Gordonia alkanivorans NBRC 16433] Length=308 Score = 355 bits (911), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 187/295 (64%), Positives = 226/295 (77%), Gaps = 1/295 (0%) Query 4 ILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAG 63 +LD+F ++L L+ GRS HT RAY+G R+L +F RG + + L++LR+WLA G Sbjct 15 MLDDFADHLRLEKGRSEHTIRAYVGGARALLSFAGARGIAAADIDLALLRAWLAELTRRG 74 Query 64 AARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAE 123 AARTT+AR+ SA K F AWAVR G++A DP+ RL+ PKA RTLPAVL QA A+ A Sbjct 75 AARTTIARQVSAAKTFCAWAVREGIMAADPSQRLKAPKAHRTLPAVLAPGQADAAIGATA 134 Query 124 SGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFG 183 + DP++LRDRLI+ELLYA+GIRV ELCGLD+DDIDTG R++RV+GKG+K+R+VP+G Sbjct 135 QDRDPDDPISLRDRLILELLYASGIRVGELCGLDIDDIDTGRRILRVIGKGDKERSVPYG 194 Query 184 QPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGP 243 +PAA A+ WL GR AL T SG ALLLGARG RLD R AR+ V V A G P MGP Sbjct 195 EPAAKAIDDWLRQGRPALATDTSGAALLLGARGGRLDQRMARSVVSGAVQAA-GGPAMGP 253 Query 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQ+YTHV+V RLRAVH +AHPRA Sbjct 254 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAVHRQAHPRA 308 >gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] Length=326 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 184/302 (61%), Positives = 220/302 (73%), Gaps = 4/302 (1%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 V+A++ ++ +L L+ G S HT RAY+GD SL F+ D GS + L L+ LR+WLAA Sbjct 25 VRAVVTAYERHLGLERGLSAHTVRAYVGDAVSLLGFVVDGGSEVAELDLARLRAWLAAQQ 84 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GA+RTTLARR ++ + FTAWA R G+LA DP RL P+A RTLP VLR QA M Sbjct 85 SGGASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAPRAHRTLPGVLRAGQAGEVMQ 144 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 A+ +GA Q DP+ALRDR IVELLYATGIRVSELCGLDV + D R+V VLGKG K+R V Sbjct 145 ASAAGAAQRDPVALRDRAIVELLYATGIRVSELCGLDVGEADFSRRVVTVLGKGGKERVV 204 Query 181 PFGQPAADALHAWLVDGRRALVTAESGH----ALLLGARGRRLDVRQARTAVHQTVAAVD 236 PFG PAA+AL W+ +GR ++T G AL LG RG+R+D R R VH V AV Sbjct 205 PFGVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRGKRVDPRAVRRVVHDAVTAVP 264 Query 237 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 GA DMGPHGLRHSAATHLLEGGADLR VQELLGH++LATTQLYTHV V RL+A+H+RAHP Sbjct 265 GALDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 324 Query 297 RA 298 RA Sbjct 325 RA 326 >gi|340525284|gb|AEK40489.1| integrase/recombinase XerC [Amycolatopsis mediterranei S699] Length=302 Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 183/302 (61%), Positives = 220/302 (73%), Gaps = 4/302 (1%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 ++A++ ++ +L L+ G S HT RAY+GD SL F+ D GS + L L+ LR+WLAA Sbjct 1 MRAVVTAYERHLGLERGLSAHTVRAYVGDAVSLLGFVVDGGSEVAELDLARLRAWLAAQQ 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GA+RTTLARR ++ + FTAWA R G+LA DP RL P+A RTLP VLR QA M Sbjct 61 SGGASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAPRAHRTLPGVLRAGQAGEVMQ 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 A+ +GA Q DP+ALRDR IVELLYATGIRVSELCGLDV + D R+V VLGKG K+R V Sbjct 121 ASAAGAAQRDPVALRDRAIVELLYATGIRVSELCGLDVGEADFSRRVVTVLGKGGKERVV 180 Query 181 PFGQPAADALHAWLVDGRRALVTAESGH----ALLLGARGRRLDVRQARTAVHQTVAAVD 236 PFG PAA+AL W+ +GR ++T G AL LG RG+R+D R R VH V AV Sbjct 181 PFGVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRGKRVDPRAVRRVVHDAVTAVP 240 Query 237 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 GA DMGPHGLRHSAATHLLEGGADLR VQELLGH++LATTQLYTHV V RL+A+H+RAHP Sbjct 241 GALDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 300 Query 297 RA 298 RA Sbjct 301 RA 302 >gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162] gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162] Length=298 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 190/294 (65%), Positives = 227/294 (78%), Gaps = 0/294 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGA 64 L E++ YL L+ GRS HT RAYL DL +LF F A+RG ++D L L+ LR+WL A +GA Sbjct 5 LAEYERYLRLERGRSEHTVRAYLADLTALFEFAAERGVAVDRLDLATLRAWLGERAASGA 64 Query 65 ARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAES 124 ARTTLAR+ S+ + +TAWA RRG L GDP ARL+ P+ RRTLP VL D A A+ A S Sbjct 65 ARTTLARQASSARNYTAWAARRGHLDGDPGARLKAPRPRRTLPGVLSADDAAAALTNAAS 124 Query 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 184 GA +GDP+A+RD+ I ELLYATGIRVSELCGLDV +D R+VRV+GKGNK+RTVP+G Sbjct 125 GAAEGDPIAVRDQAITELLYATGIRVSELCGLDVGSVDRDRRVVRVIGKGNKERTVPYGA 184 Query 185 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPH 244 PAA+ L W+ + R LV +SG AL LGARG RLD RQART VHQ +V G ++ PH Sbjct 185 PAAEVLGRWVDEARPQLVAEKSGAALFLGARGGRLDPRQARTVVHQVTGSVPGGREVAPH 244 Query 245 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GLRH+AATHLL+GGADLRVVQELLGHSSLATTQLYTHV+VARLRA HE+AHPRA Sbjct 245 GLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAHPRA 298 >gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length=325 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 181/301 (61%), Positives = 219/301 (73%), Gaps = 3/301 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSL---FAFLADRGSSLDALTLSVLRSWLA 57 V A +D F+ +L + G S HT RAY+GD+ SL F + L+ L L+VLR WLA Sbjct 25 VGAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLREWLA 84 Query 58 ATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALR 117 A GA+R+TLARR ++ + FTAWA R LL DP RL P +R LP VLR +QA Sbjct 85 AQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKS 144 Query 118 AMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQ 177 AM+A+++GAEQGDP+ALRD +VELLYATG+RVSELCGLD+DD+D R+VRV+GKG+K+ Sbjct 145 AMSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKE 204 Query 178 RTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDG 237 R VPFG PA DA+ W+ GR L T SG AL LGARG RLD R R VH V AV G Sbjct 205 RAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSG 264 Query 238 APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPR 297 A D+GPHGLRHSAATHLLEGGADLR VQELLGH++LATTQLYTHV V RL+A+H+R HPR Sbjct 265 ATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 324 Query 298 A 298 + Sbjct 325 S 325 >gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length=301 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 180/299 (61%), Positives = 218/299 (73%), Gaps = 3/299 (1%) Query 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSL---FAFLADRGSSLDALTLSVLRSWLAAT 59 A +D F+ +L + G S HT RAY+GD+ SL F + L+ L L+VLR WLAA Sbjct 3 AAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLREWLAAQ 62 Query 60 AGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM 119 GA+R+TLARR ++ + FTAWA R LL DP RL P +R LP VLR +QA AM Sbjct 63 HADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSAM 122 Query 120 AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRT 179 +A+++GAEQGDP+ALRD +VELLYATG+RVSELCGLD+DD+D R+VRV+GKG+K+R Sbjct 123 SASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKERA 182 Query 180 VPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAP 239 VPFG PA DA+ W+ GR L T SG AL LGARG RLD R R VH V AV GA Sbjct 183 VPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGAT 242 Query 240 DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 D+GPHGLRHSAATHLLEGGADLR VQELLGH++LATTQLYTHV V RL+A+H+R HPR+ Sbjct 243 DVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHPRS 301 >gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S] gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S] Length=313 Score = 338 bits (866), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 207/296 (70%), Positives = 231/296 (79%), Gaps = 2/296 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLA-DRGSSLDA-LTLSVLRSWLAATAGA 62 LD++DEYL L+ GRS HT RAY D+ L FL DR ++ A L L VLR+WLAA A A Sbjct 18 LDDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAVLADLDLRVLRAWLAAQAAA 77 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 G ARTTLARRTS+ K FTAWA R G + DP RL PKA RTLP VLRQ+QA AM AA Sbjct 78 GTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMVAA 137 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 ESGA Q DP+A+RDRLIVELLY+TGIRV ELCGLD+ DID R++RVLGKG+K+R VPF Sbjct 138 ESGAAQEDPVAVRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERVVPF 197 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G+PA DA+ AWL GR LV SG ALLLG RG RLD RQAR VH V AV GAPD+ Sbjct 198 GRPAEDAIGAWLRSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQAVPGAPDLA 257 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV+VARLRAVH++AHPRA Sbjct 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHPRA 313 >gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length=313 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 207/296 (70%), Positives = 231/296 (79%), Gaps = 2/296 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLA-DRGSSLDA-LTLSVLRSWLAATAGA 62 LD++DEYL L+ GRS HT RAY D+ L FL DR ++ A L L VLR+WLAA A A Sbjct 18 LDDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAVLADLDLRVLRAWLAAQAAA 77 Query 63 GAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAA 122 G ARTTLARRTS+ K FTAWA R G + DP RL PKA RTLP VLRQ+QA AM AA Sbjct 78 GTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMVAA 137 Query 123 ESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 ESGA Q DP+A+RDRLIVELLY+TGIRV ELCGLD+ DID R++RVLGKG+K+R VPF Sbjct 138 ESGAAQEDPVAVRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERVVPF 197 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G+PA DA+ AWL GR LV SG ALLLG RG RLD RQAR VH V AV GAPD+ Sbjct 198 GRPAEDAIGAWLRSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQAVPGAPDLA 257 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV+VARLRAVH++AHPRA Sbjct 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHPRA 313 >gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247] Length=304 Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 193/298 (65%), Positives = 227/298 (77%), Gaps = 1/298 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 V +LDEF ++L L+ GRS HT RAY+GD+R L AF RG + + L++LR+WLA Sbjct 8 VVGVLDEFADHLRLEMGRSPHTVRAYVGDVRGLIAFAGARGVATADIDLTLLRAWLAEHT 67 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAARTT+AR+ S+VK F AWAVR GL++ DP+ RL+ PKA RTLPAVL Q +A Sbjct 68 RRGAARTTIARQVSSVKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQVPDVIA 127 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTV 180 AA + QGDP+ALRD +IVE+LYA GIRV ELCGLDVDD+D R++RV+GKG+K+RTV Sbjct 128 AAAAERPQGDPIALRDTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDKERTV 187 Query 181 PFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPD 240 P+G PAA AL AWL GR AL T SG ALLLGARG RLD R ART V + V G P Sbjct 188 PYGAPAAVALDAWLRHGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQA-GGPA 246 Query 241 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQ+YTHV+V RLRAVH +AHPRA Sbjct 247 MGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAVHNQAHPRA 304 >gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length=308 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 177/301 (59%), Positives = 216/301 (72%), Gaps = 6/301 (1%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSS----LDALTLSVLRSWL 56 + + +++ +L + GRS +T RAYLGDLR+ F D + L A+T++ LR WL Sbjct 9 ISEVFAQYERHLRFERGRSPNTVRAYLGDLRAYFGPARDETAPARDVLGAVTIADLRGWL 68 Query 57 AATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQAL 116 + GA+R TLARR S +K F WAVR GL A DP RL PK R+ LP VLR+DQA Sbjct 69 SEMTAEGASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPHVLRKDQAE 128 Query 117 RAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNK 176 +A+ +A + ++ L LRD+L++ELLY TG+RV ELCGLDVDD+D G RL VLGKG+K Sbjct 129 QALTSAPAPSDGA--LLLRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATVLGKGDK 186 Query 177 QRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVD 236 QR VPFG A+DA+ AWL DGR L SG ALLLGARG RLD R AR VH+ VA Sbjct 187 QRVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHERVAREP 246 Query 237 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 G PD+GPHGLRHSAATHLLEGGADLRVVQE+LGHSSLATTQ+YTHV+V R+RAVH +AHP Sbjct 247 GLPDLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAVHSQAHP 306 Query 297 R 297 R Sbjct 307 R 307 >gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] Length=297 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 182/296 (62%), Positives = 215/296 (73%), Gaps = 3/296 (1%) Query 4 ILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAG 63 +L F ++L+ + G S HT RAY GD+R L AF RG + L L +LR+WLA A G Sbjct 4 VLVAFADHLSFEKGHSKHTVRAYTGDIRGLVAFAGARGVEVGDLDLPLLRAWLAEHARRG 63 Query 64 AARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAE 123 AARTT+AR+ S+ K F AWAVR G+L DPA RLQ PK+ R LPAVL +QA A+ A Sbjct 64 AARTTIARQVSSAKTFCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGAA 123 Query 124 S-GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPF 182 A GDP+A RDR+I+ELLY+ GIRV ELCGLD+ D+D R++RV+GKG+KQR+VP+ Sbjct 124 GDSAGDGDPVAFRDRVILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVPY 183 Query 183 GQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMG 242 G PAA AL WL GR AL TA SG ALLLG +G RLD R ART VH+ A +G Sbjct 184 GGPAAAALDDWLRRGRSALATAASGDALLLGVKGGRLDQRMARTVVHR--ATETAGQSVG 241 Query 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 PH LRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHV+V RLRAVH +AHPRA Sbjct 242 PHALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAVHRQAHPRA 297 >gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985] Length=304 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 186/302 (62%), Positives = 214/302 (71%), Gaps = 10/302 (3%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLD--------ALTLSVLRSWL 56 L +++ +L + GRS +T RAYLGDLR+ F D D A+T++ LR WL Sbjct 5 LAQYERHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLRGWL 64 Query 57 AATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQAL 116 + GA+R TLARR S +K F WA+R GL DP ARL PK RRTLP VLRQDQA Sbjct 65 SEMTAEGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQDQAE 124 Query 117 RAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNK 176 +A+ A E PLALRD+LI+ELLY TG+RV ELCGLD+DDID RL VLGKG+K Sbjct 125 QALGPAPHQRE--GPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGDK 182 Query 177 QRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVD 236 QR VPFG AADAL AWL DGR ALV SG ALLLGARG+RLD R AR V + VA Sbjct 183 QRAVPFGAKAADALAAWLRDGRPALVGPRSGAALLLGARGKRLDPRTARRVVQERVAEEA 242 Query 237 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 G P +GPHGLRHSAATHLLEGGADLRVVQE+LGHSSLATTQ+YTHV+V RLR VHE+AHP Sbjct 243 GLPSLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAHP 302 Query 297 RA 298 R Sbjct 303 RG 304 >gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] Length=329 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 170/314 (55%), Positives = 215/314 (69%), Gaps = 19/314 (6%) Query 4 ILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFL-------------------ADRGSSL 44 I+ +++++L + S HT RAY+GD+ SL AFL + + Sbjct 15 IVADYEDHLRDERMLSQHTTRAYVGDVVSLLAFLHGVNEDGADGPSAHEEHPDGEHSDGV 74 Query 45 DALTLSVLRSWLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARR 104 + L + VLR+WLA AG +R T+ARR ++ + FTAWA RRGLL DP RL P+ R Sbjct 75 NGLHVGVLRAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDPGIRLASPRPHR 134 Query 105 TLPAVLRQDQALRAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTG 164 LP VLR D+A M +E+G G P+ALRD ++ELLYATG+R+SELCGLD+DD+D Sbjct 135 RLPGVLRMDEATELMRVSEAGTATGHPVALRDHALIELLYATGVRISELCGLDIDDVDFD 194 Query 165 HRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQA 224 R+VRVLGKG KQR VPFG P+ AL WL GR + TA+SG AL LGARG+R+D R Sbjct 195 RRVVRVLGKGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFLGARGKRVDPRTV 254 Query 225 RTAVHQTVAAVDGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAV 284 R VH VAAV GA D+GPHGLRHSAATH+L+GGADLR VQELLGH++LATTQLYTHV V Sbjct 255 RRVVHDAVAAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTV 314 Query 285 ARLRAVHERAHPRA 298 RL+A+H++ HPRA Sbjct 315 ERLKAIHDQTHPRA 328 >gi|289751559|ref|ZP_06510937.1| integrase xerC [Mycobacterium tuberculosis T92] gi|289692146|gb|EFD59575.1| integrase xerC [Mycobacterium tuberculosis T92] Length=292 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 166/167 (99%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 +QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA Sbjct 1 MQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATA 60 Query 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA Sbjct 61 GAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMA 120 Query 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRL 167 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRL Sbjct 121 AAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRL 167 >gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827] Length=325 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 183/302 (61%), Positives = 222/302 (74%), Gaps = 5/302 (1%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSV----LRSWL 56 V LD ++ +L+L+ G S HT RAYLGD +L LA G+ DA SV LRSWL Sbjct 25 VATALDAYERHLSLERGLSPHTVRAYLGDAVALLVHLA-AGTPGDATVESVDLLGLRSWL 83 Query 57 AATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQAL 116 AA GA+RTT+ARR ++ +A TAWA R GLLA DP RL P+ RTLP V+R DQA Sbjct 84 AAQHAEGASRTTMARRAASARALTAWAARTGLLAEDPGPRLNAPRPHRTLPVVVRPDQAG 143 Query 117 RAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNK 176 A+ AA +GA+Q DP+ALRDR +VELLYA+G+RV+ELCGLD+DD+D R++RVLGKG++ Sbjct 144 AALEAAAAGADQHDPVALRDRAVVELLYASGVRVAELCGLDLDDVDYSQRVIRVLGKGSR 203 Query 177 QRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVD 236 +RTVPFG PA A+ W GR ALVT S AL LGARG RLD R AR VH + AV Sbjct 204 ERTVPFGVPAERAVRQWADLGRSALVTERSHRALFLGARGGRLDPRTARRVVHDVMGAVP 263 Query 237 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 G+ D+GPHGLRHSAATHLLEGGADLR VQELLGH++LATTQLYTHV V RL+A+H+R HP Sbjct 264 GSADVGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 323 Query 297 RA 298 R+ Sbjct 324 RS 325 >gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6] gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6] Length=295 Score = 315 bits (807), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 168/295 (57%), Positives = 208/295 (71%), Gaps = 1/295 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSS-LDALTLSVLRSWLAATAGAG 63 ++ F YL+ + S HTRRAYLGDL SL AF A G++ L+ L L LR WL A + +G Sbjct 1 MEGFAAYLSGERALSPHTRRAYLGDLESLLAFAASEGAAELEDLELGTLRRWLGAQSQSG 60 Query 64 AARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAE 123 AAR TLARR++ ++AFTAWA+R L DPA RL+ PK ++LP VL+ Q R + E Sbjct 61 AARATLARRSATIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLLKELE 120 Query 124 SGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFG 183 GA GDP+A+R+R IVELLYATGIRV EL LDVD++D R +RV+GKGNK+RTVP+G Sbjct 121 DGAADGDPMAVRNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKERTVPYG 180 Query 184 QPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGP 243 PAA A+ WL GR + SG AL LG RG R+D RQ R+ VH A+ GP Sbjct 181 VPAALAVDDWLRRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDTSASGP 240 Query 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 H LRHSAATHLL+GGADLR VQE+LGHSSLATTQ+YTHV+V RLR +++AHPRA Sbjct 241 HALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 295 >gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] Length=308 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/292 (58%), Positives = 204/292 (70%), Gaps = 1/292 (0%) Query 8 FDEYLALQCGRSVHTRRAYLGDLRSLFAFLA-DRGSSLDALTLSVLRSWLAATAGAGAAR 66 F YL + RS HT RAYL D+ SL A D + LD + L+ LR WL A + A +R Sbjct 17 FGRYLEGERARSPHTVRAYLSDVHSLLTVAAADGATDLDGIELATLRRWLGAQSEARMSR 76 Query 67 TTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGA 126 +TLARR + ++FT+WAVR LL DPA RL+ PK R+LP VL Q Q LR + ++ A Sbjct 77 STLARRAATARSFTSWAVREELLGSDPALRLKAPKRERSLPGVLHQQQVLRVVDHLKAAA 136 Query 127 EQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPA 186 E G PLALRDR +VELLYATG+RV EL G+DVDD+D R +RV+GKGNK+RTVP+G PA Sbjct 137 EDGGPLALRDRAMVELLYATGVRVGELAGMDVDDLDPDRRTLRVVGKGNKERTVPYGLPA 196 Query 187 ADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGL 246 A A+ WL GR L SG AL LGARGRR+D RQ RT V + A+ GPH L Sbjct 197 AVAVDDWLRRGRPVLAVDGSGPALFLGARGRRVDQRQVRTVVKDVLDALGDTAATGPHAL 256 Query 247 RHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 RHSAATHLL+GGADLR VQE+LGHSSLATTQ+YTHV+V RLR +++AHPRA Sbjct 257 RHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAHPRA 308 >gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length=307 Score = 308 bits (789), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 183/302 (61%), Positives = 221/302 (74%), Gaps = 5/302 (1%) Query 2 QAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLA----DRGSS-LDALTLSVLRSWL 56 ++++ ++ +L+L+ G S HT RAY+GD+ SL AF DR + + L ++ LR+WL Sbjct 6 ESVVAGYERHLSLERGLSPHTVRAYVGDVVSLLAFQTVGAEDRPARRFEDLDVTQLRAWL 65 Query 57 AATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQAL 116 A GA RTTLARR +A + FTAWA R GLL DP RL P+ RTLP VLR +QA Sbjct 66 AGQRSDGAGRTTLARRAAAARTFTAWAHRTGLLKSDPGGRLAAPRTHRTLPGVLRAEQAD 125 Query 117 RAMAAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNK 176 M A+ GA + DP+ALRDR +VELLYATGIRVSELCGLDV +D R++ V+GKG+K Sbjct 126 ALMDASAKGAAERDPVALRDRALVELLYATGIRVSELCGLDVASVDFSRRVLSVVGKGDK 185 Query 177 QRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVD 236 +RTVPFG PAA+AL AWL DGR AL AL LG RG+RLD R AR VH+ VAAV Sbjct 186 ERTVPFGVPAAEALTAWLEDGRPALAGETPPKALFLGVRGKRLDPRAARRVVHEAVAAVP 245 Query 237 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 GA DMGPHGLRHSAATHLLEGGADLR VQELLGH++LATTQLYTHV V RL+A+H+RAHP Sbjct 246 GAADMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 305 Query 297 RA 298 RA Sbjct 306 RA 307 >gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614] gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614] Length=312 Score = 305 bits (780), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 168/295 (57%), Positives = 203/295 (69%), Gaps = 1/295 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDA-LTLSVLRSWLAATAGAG 63 L +++ +LA + S HT RAY+GD+ L + G + L L LRSWLA G Sbjct 18 LGDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRTLRSWLAKQQTMG 77 Query 64 AARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAE 123 +RTTLARR +A + FTAW R G D A L PKA RTLP VLR D+A + AA Sbjct 78 RSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTLPPVLRTDEAADLVRAAV 137 Query 124 SGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFG 183 A+ G P+ LRD ++ELLYATGIRV EL GLD+DD+D +VRVLGKG K+RTVPFG Sbjct 138 EHADDGSPVGLRDVAMLELLYATGIRVGELVGLDIDDLDRERNVVRVLGKGRKERTVPFG 197 Query 184 QPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGP 243 +PAA A+ WL GR L SG AL LGARGRR+D R RT VH+ +A V GAPD+GP Sbjct 198 RPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRIDQRAVRTVVHRRIAEVPGAPDIGP 257 Query 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 HGLRH+AATHLLEGGADLR VQELLGH+SLATTQ+YTHV+ RLR +++AHPRA Sbjct 258 HGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHPRA 312 >gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1] gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1] Length=311 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 169/299 (57%), Positives = 204/299 (69%), Gaps = 1/299 (0%) Query 1 VQAILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG-SSLDALTLSVLRSWLAAT 59 +Q +D F YL +C RS HT RAYL D+ SL F G L L L LR WL A Sbjct 13 LQKAVDGFRRYLEGECARSAHTVRAYLSDVESLLGFAVQEGVQELRQLELGSLRRWLGAQ 72 Query 60 AGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM 119 + AG AR TLARR + ++FT WA+R L+ DPA RLQ PK ++LP VL+Q Q R + Sbjct 73 SEAGMARATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVSRMV 132 Query 120 AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRT 179 + A G P+ALR+R +VELLYATG+RV EL GLD+DD+D R VRVLGKGNK+RT Sbjct 133 DDLNTAAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNKERT 192 Query 180 VPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAP 239 VPFG PAA A+ WL GR A+V A SG AL LG RG R+D RQ R V + + A+ Sbjct 193 VPFGVPAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALGDTS 252 Query 240 DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GPH LRHSAATHLL+GGADLR VQE+LGHSSLATTQ+YTHV+V RLR +++AHPRA Sbjct 253 ATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 311 >gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] Length=308 Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 163/295 (56%), Positives = 202/295 (69%), Gaps = 1/295 (0%) Query 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSS-LDALTLSVLRSWLAATAGAG 63 LD F YLA + S HT R Y+GD+R L + + G+ L+ L L R WL A + AG Sbjct 14 LDAFARYLAAERAVSPHTLRGYVGDVRGLLSHASIEGAKRLEDLELGTFRRWLGAQSQAG 73 Query 64 AARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAE 123 AARTTLARR+++V+ FTAWA+ + DPA RL+ PK +LP VL Q R +A Sbjct 74 AARTTLARRSASVRVFTAWALGEERIVADPALRLKAPKREASLPGVLHSGQLARLLAGLA 133 Query 124 SGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFG 183 AE+G PLALR+R IVELLYATG+RV EL GLD+DD+D R +RV+GKGNK+RTVP+G Sbjct 134 QAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDDLDPDRRTLRVIGKGNKERTVPYG 193 Query 184 QPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGP 243 PAA A+ WL GR + + SG AL LG RG R+D RQ RT V+ + GP Sbjct 194 VPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVDQRQVRTMVNGLFKELGDTSASGP 253 Query 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 H LRHSAATHLL+GGADLR VQE+LGHSSLATTQ+YTHV+V RLR +++AHPRA Sbjct 254 HALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 308 >gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length=320 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/297 (58%), Positives = 205/297 (70%), Gaps = 1/297 (0%) Query 3 AILDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRG-SSLDALTLSVLRSWLAATAG 61 A+L +++ +L+ + G S HT RAYLGD+RSL G + + + L LRSWLA Sbjct 24 ALLGDYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMGRTDPEGIDLRTLRSWLAKQQT 83 Query 62 AGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAA 121 G +RTTLARR +A + F W VR G D A L PKA RTLP VLR D+ +AA Sbjct 84 TGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSPKAHRTLPPVLRPDEVESLIAA 143 Query 122 AESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVP 181 A + AE G + +RD ++E+LYATG RV EL GLD+DD+D R+VRVLGKG K+R VP Sbjct 144 AIAAAEDGTAVGMRDIAVLEMLYATGSRVGELVGLDLDDVDYERRVVRVLGKGRKERMVP 203 Query 182 FGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDM 241 FG PAA AL W+V GR LVT SG AL LGARG RLD R RT VH+ +A V GAPD+ Sbjct 204 FGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLDQRAVRTLVHRRLADVPGAPDL 263 Query 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 GPHGLRHS ATHLLEGGADLR VQELLGH+SLATTQ+YTHV+ RLR + +AHPRA Sbjct 264 GPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAHPRA 320 Lambda K H 0.322 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 498909360640 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40